RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11733
(971 letters)
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes) is
one of the lid subunits of the 26S proteasome and has
been shown in Saccharomyces cerevisiae to be required
for structural integrity. The 26S proteasome is is
involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 231 bits (592), Expect = 9e-71
Identities = 80/179 (44%), Positives = 110/179 (61%), Gaps = 5/179 (2%)
Query: 146 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYS 205
D +E KK +LE+LD +LK+ K N KE IRR DL +HY GDL NALK YS
Sbjct: 1 DEAWVEELRKKNEEELEELDAELKDAKENLGKEEIRRALLDLAEHYAKIGDLENALKAYS 60
Query: 206 RARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265
RAR+YCT+ H +DMCLN+IRV ++ +W HV Y+ KA++ + + +LK
Sbjct: 61 RAREYCTSLGHKIDMCLNLIRVGIFFNDWDHVSKYIEKAKSLIEKGGDWERR----NRLK 116
Query: 266 VAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 324
V GLA LA R +K AA+ FL + + EL+S ++A YG LCALA+ DR +L+K+
Sbjct: 117 VYEGLALLAIRDFKEAAKLFLDSLSTFTS-TELISYEDVAIYGVLCALASLDRVDLKKK 174
Score = 157 bits (399), Expect = 3e-44
Identities = 51/107 (47%), Positives = 68/107 (63%)
Query: 716 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYS 775
D +E KK +LE+LD +LK+ K N KE IRR DL +HY GDL NALK YS
Sbjct: 1 DEAWVEELRKKNEEELEELDAELKDAKENLGKEEIRRALLDLAEHYAKIGDLENALKAYS 60
Query: 776 RARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
RAR+YCT+ H +DMCLN+IRV ++ +W HV Y+ KA++ +
Sbjct: 61 RAREYCTSLGHKIDMCLNLIRVGIFFNDWDHVSKYIEKAKSLIEKGG 107
Score = 81.8 bits (203), Expect = 6e-18
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 535 RTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRS 594
R N KV GLA LA R +K AA+ FL + + EL+S ++A YG LCALA+ DR
Sbjct: 111 RRNRLKVYEGLALLAIRDFKEAAKLFLDSLSTFTS-TELISYEDVAIYGVLCALASLDRV 169
Query: 595 ELEKQ 599
+L+K+
Sbjct: 170 DLKKK 174
>gnl|CDD|227514 COG5187, RPN7, 26S proteasome regulatory complex component,
contains PCI domain [Posttranslational modification,
protein turnover, chaperones].
Length = 412
Score = 82.7 bits (204), Expect = 2e-16
Identities = 63/326 (19%), Positives = 131/326 (40%), Gaps = 13/326 (3%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
D + T KK K+E+LD ++ + ++ + ++ ++Y D+ N +
Sbjct: 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM 138
Query: 205 SRA--RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262
R T K +D+ L IR+ + + V + A+ +G D +
Sbjct: 139 RRLMRDAMSTGLK--IDVFLCKIRLGLIYGDRKVVEESLEVAD--DIIEKGGDWERR--N 192
Query: 263 KLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELE 322
+ KV G+ ++ R +K AA + EL+S + Y C L +R +++
Sbjct: 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFES-SELISYSRAVRYAIFCGLLRLERRDIK 251
Query: 323 KQVIFSSGFKLFLELEPQLRDI---LVQFYNSKYATCLNLLAQIMDNLLL-DMYIAPHVN 378
+++ S + +L + Y Y L + N L D+++ HV+
Sbjct: 252 TKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVD 311
Query: 379 TLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKI 438
++R R Q Y L M+ F +++ ++ +L I +G++ ID N +
Sbjct: 312 LFVREMRRRVYAQLLESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGV 371
Query: 439 LYAKQQDQRSTTFEKSLNVGKEYARK 464
+ + D+++ + + G + RK
Sbjct: 372 VETNRPDEKNQQYSSVVKQGDDLLRK 397
Score = 40.7 bits (95), Expect = 0.003
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 535 RTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRS 594
R N +KV G+ ++ R +K AA + EL+S + Y C L +R
Sbjct: 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES-SELISYSRAVRYAIFCGLLRLERR 248
Query: 595 ELEKQDLES 603
+++ + L+S
Sbjct: 249 DIKTKILDS 257
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 74.9 bits (185), Expect = 3e-16
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 341 LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSAD 400
RD+L FY+ + +LA D LL D +A + L +IR L + PY S
Sbjct: 1 YRDLLRAFYSGDLSDFEEILADNEDELL-DDGLAELLEDLRRKIRELNLRRLAKPYSSIS 59
Query: 401 LNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILY 440
L+ ++ ++ +E L LI DG+I+ +ID N I+
Sbjct: 60 LSDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVV 99
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 486 LLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN 527
LLD +A + L +IR L + PY S L+ ++
Sbjct: 27 LLDDGLAELLEDLRRKIRELNLRRLAKPYSSISLSDLAKLLG 68
Score = 35.7 bits (83), Expect = 0.016
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 864 LENELMTLILDGQIQARIDSHNKILY 889
+E L LI DG+I+ +ID N I+
Sbjct: 74 VEKILSKLIRDGRIRGKIDQVNGIVV 99
Score = 30.6 bits (70), Expect = 0.96
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 MTLILDGQIQARIDSHNKILY 21
LI DG+I+ +ID N I+
Sbjct: 79 SKLIRDGRIRGKIDQVNGIVV 99
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 62.3 bits (152), Expect = 5e-12
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434
V L +IR L+Q PY S L+ ++ ++ +E + I DG+I A+ID
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQ 60
Query: 435 HNKILY 440
N I+
Sbjct: 61 VNGIVE 66
Score = 35.3 bits (82), Expect = 0.019
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 864 LENELMTLILDGQIQARIDSHNKILY 889
+E + I DG+I A+ID N I+
Sbjct: 41 VEKLVSKAIRDGEISAKIDQVNGIVE 66
Score = 32.6 bits (75), Expect = 0.13
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 493 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT 529
V L +IR L+Q PY S L+ ++ +
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS 37
Score = 30.3 bits (69), Expect = 0.85
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 MTLILDGQIQARIDSHNKILY 21
I DG+I A+ID N I+
Sbjct: 46 SKAIRDGEISAKIDQVNGIVE 66
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 62.3 bits (152), Expect = 5e-12
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434
V L +IR L+Q PY S L+ ++ ++ +E + I DG+I A+ID
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQ 60
Query: 435 HNKILY 440
N I+
Sbjct: 61 VNGIVE 66
Score = 35.3 bits (82), Expect = 0.019
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 864 LENELMTLILDGQIQARIDSHNKILY 889
+E + I DG+I A+ID N I+
Sbjct: 41 VEKLVSKAIRDGEISAKIDQVNGIVE 66
Score = 32.6 bits (75), Expect = 0.13
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 493 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT 529
V L +IR L+Q PY S L+ ++ +
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS 37
Score = 30.3 bits (69), Expect = 0.85
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 MTLILDGQIQARIDSHNKILY 21
I DG+I A+ID N I+
Sbjct: 46 SKAIRDGEISAKIDQVNGIVE 66
>gnl|CDD|227488 COG5159, RPN6, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 421
Score = 38.0 bits (88), Expect = 0.024
Identities = 23/117 (19%), Positives = 49/117 (41%)
Query: 341 LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSAD 400
+ + F N + LAQ D L D +I H+ LY + + L++ P+ +
Sbjct: 286 MLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVE 345
Query: 401 LNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNV 457
++ ++ +E +L +ILD +D + L + + T++++L
Sbjct: 346 ISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNTYDEALEQ 402
>gnl|CDD|218124 pfam04518, Effector_1, Effector from type III secretion system.
This is a family of effector proteins which are secreted
by the type III secretion system. The precise function
of this family is unknown.
Length = 380
Score = 29.6 bits (67), Expect = 7.8
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 33/151 (21%)
Query: 427 QIQARIDSHNKILYAKQQDQRSTTFEK---SLNVGKEYARKS--NMLILRSAMIKHNICV 481
++Q +I Q + +S SL+ G + A+ S N L+SA
Sbjct: 86 KLQQKIA---------QLELKSAELNPQKASLDPGMKPAKDSFVNSSPLQSAFA------ 130
Query: 482 KDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT----------IQ 531
+LLLD Y+ L + Y + DL + +F T Q
Sbjct: 131 --SLLLDKYLPKQEEFLNALGSELNFSNLAANYGN-DLLDIISSFQTASVYYNLASYLGQ 187
Query: 532 THTRTNDFKVAAGLAELATRKYKTAARFFLQ 562
TN F + A K K R ++
Sbjct: 188 GKMGTNAFPGSYDEALAKLEKEKEQIRRDIK 218
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 30.1 bits (68), Expect = 8.5
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 187 LGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246
LG YL GD + A K +A + +V L + K +
Sbjct: 62 LGKIYLALGDYAAAEKELRKALS----------LGYPKNQVLPLL---ARAYLLQGKFQQ 108
Query: 247 TPDFAEGKD-NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288
D GK + +L GLA L + + A + + QA
Sbjct: 109 VLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQA 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,177,159
Number of extensions: 4776270
Number of successful extensions: 3784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3774
Number of HSP's successfully gapped: 26
Length of query: 971
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 865
Effective length of database: 6,236,078
Effective search space: 5394207470
Effective search space used: 5394207470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.4 bits)