RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11733
(971 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 158 bits (401), Expect = 2e-42
Identities = 48/318 (15%), Positives = 106/318 (33%), Gaps = 9/318 (2%)
Query: 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN---GKHV 217
+ K K +++S+ L Y D + AL ++ +
Sbjct: 82 CKDCIEWAKQEKRTFLRQSLEA---RLIALYFDTALYTEALALGAQLLRELKKLDDKNLL 138
Query: 218 VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRK 277
V++ L + L N + + A T + Q + L R
Sbjct: 139 VEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL--DLQSGILHAADERD 196
Query: 278 YKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLEL 337
+KTA +F +A + + + Y LC + ++ + V
Sbjct: 197 FKTAFSYFYEAFEGFDSV-DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRD 255
Query: 338 EPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYL 397
++ + + A L + L D+ + H+ TLY + + L + PY
Sbjct: 256 IDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYS 315
Query: 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNV 457
+ ++ + + +E +L +ILD + +D +L ++ T+E+ L
Sbjct: 316 RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLET 375
Query: 458 GKEYARKSNMLILRSAMI 475
+ + + L ++ +
Sbjct: 376 IQSMGKVVDTLYQKAKKL 393
Score = 47.9 bits (113), Expect = 1e-05
Identities = 24/176 (13%), Positives = 46/176 (26%), Gaps = 19/176 (10%)
Query: 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVA--------FNTTIQALENELMTLILDG 426
P T R A Y P + L+ S F T
Sbjct: 156 PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD 215
Query: 427 QIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNIC------ 480
++A +L Q + ++ ++S +
Sbjct: 216 SVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQ 275
Query: 481 -----VKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQ 531
K L D+ + H+ TLY + + L + PY + ++ + +
Sbjct: 276 AALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMP 331
Score = 47.2 bits (111), Expect = 2e-05
Identities = 20/200 (10%), Positives = 50/200 (25%), Gaps = 52/200 (26%)
Query: 772 KCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSGFKL 831
+ + A Y D +V ++ +L + ++ V
Sbjct: 195 RDFKTAFSYFYEAFEGFDSVDSVKALTSLKY---MLLCKIMLGQSDDVNQLVSGKLAITY 251
Query: 832 FLELEPQLRDILVQFYNSKYATCLNLLAQI------------------------------ 861
++ + + A L +
Sbjct: 252 SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRII 311
Query: 862 ----------MA---------LENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEK 902
+A +E +L +ILD + +D +L ++ T+E+
Sbjct: 312 EPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYER 371
Query: 903 SLNVGKEYARKSNMLILRSA 922
L + + + L ++
Sbjct: 372 VLETIQSMGKVVDTLYQKAK 391
Score = 42.5 bits (99), Expect = 5e-04
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 1 MTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMI 56
+ILD + +D +L ++ T+E+ L + + + L ++ +
Sbjct: 338 SQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKL 393
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.8 bits (188), Expect = 2e-14
Identities = 105/694 (15%), Positives = 201/694 (28%), Gaps = 194/694 (27%)
Query: 277 KYKTAARFFLQA---HFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSG--- 330
+YK F A +FD D ++ + E++ I S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKS-------------ILSKEEIDH--IIMSKDAV 61
Query: 331 ---FKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNT-LYTQIRN 386
+LF L + +++ +F L + + P + T +Y + R+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM----SPIKTEQRQPSMMTRMYIEQRD 117
Query: 387 RAL--IQYFSPY----------LSADLNKMSVAFNTTI--------QALENELMTLILDG 426
R Q F+ Y L L ++ A N I + ++ L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV---CLSY 174
Query: 427 QIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVKDNLL 486
++Q ++D KI + LN+ + ++ + +L+ + + I
Sbjct: 175 KVQCKMD--FKIFW--------------LNLKNCNSPETVLEMLQK--LLYQIDPNWTSR 216
Query: 487 LDMYIAPHVNTLYTQIRNRALIQYFSPYLSA-----DLNKMSV--AFNTTIQTHTRTNDF 539
D + Q R L++ PY + ++ AFN + + T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 540 KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 599
+V L+ T H L+P+ + L + Q
Sbjct: 276 QVTDFLSAATTT------------HISLDHHSMTLTPDEVK---SLLLKYL----DCRPQ 316
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DL T R +I + L + + N + +L + SL
Sbjct: 317 DLPREVL--TTNPRRLSII------AESIRDGLATWDNW--KHVNCD---KLTTIIESSL 363
Query: 660 SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIP--TLDP 717
+ L+ + L FP P IP L
Sbjct: 364 NVLEPAEYRKMFDRLSVFP--------------------PSA---------HIPTILLSL 394
Query: 718 LLIETKNKKAAMKLEKLDNDL---KNYKSNSIKESIRRGHDDLGDHYLDCGDL-SNALKC 773
+ + + + KL K K ++I SI + +L + L + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDH 452
Query: 774 YSRARDYCTNG--KHVVDMCLNVIRVSVYLQNWSHV---LSYVNKAEATPDFAEVIFSSG 828
Y+ + + ++ +D Y +SH+ L + E F V
Sbjct: 453 YNIPKTFDSDDLIPPYLDQ---------YF--YSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 829 FKLFLELEPQLRDILVQFYNSKYATC-----LNLLAQIM--------------ALENELM 869
F LE ++R + A LN L Q+ L N ++
Sbjct: 502 F-----LEQKIR-------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 870 TLILDGQIQARIDSHNKILYAKQQDQRSTTFEKS 903
+ + + +L + FE++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 71.0 bits (173), Expect = 1e-12
Identities = 87/625 (13%), Positives = 179/625 (28%), Gaps = 161/625 (25%)
Query: 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLIL-DGQIQARIDSHNKILYA 441
Q + + ++ F + + V + L E + I+ + L +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 442 KQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVKDNLLLDMYIAPHVNTLYTQ 501
KQ++ E+ L Y L S + + +++ MYI + LY
Sbjct: 74 KQEEMVQKFVEEVLR--INYK------FLMSPI--KTEQRQPSMMTRMYIEQR-DRLYND 122
Query: 502 IRNRALIQYFSPY----------LSADLNKMSVAFNTTIQTHTRTNDFKVAAG------- 544
Q F+ Y L L ++ A N I G
Sbjct: 123 ------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID------------GVLGSGKT 164
Query: 545 -LAELATRKYKTAARFFLQAH---FDYCDFPELLSPNNIATYGGLCALATFDRSELEKQD 600
+A YK + + C+ PE + + L + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHS 220
Query: 601 LESYANSYTGLARLFRLIYVADHCPAL---RHEALRMAIQY--VMQTYNVN---LYIQLH 652
++ A L RL+ + L + +Q +N++ L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCKILLTTRF 274
Query: 653 RKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLN-STGALPDVASSGNMGPQD 711
+++++ LS+ + + + + P + L YL+ LP + N
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKS--L-LLKYLDCRPQDLPREVLTTN----- 326
Query: 712 IPTLDPLLIETKNKKAAMKLEKLDNDL---KNYK-------SNSIKESIRR-GHDDLGDH 760
P + ++ E + + L N+K + I+ S+ +
Sbjct: 327 -----PRRL-------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 761 YLDCG----DL---SNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 813
+ + L ++ VV+ + S+ + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKL---HKYSLVEKQPKESTISI-- 428
Query: 814 AEATPDFAEVIFSSGFKLFLEL------EPQLRDILVQFYNSKYATCLNLLAQIMALENE 867
P ++LEL E L +V YN ++
Sbjct: 429 ----PS-----------IYLELKVKLENEYALHRSIVDHYNIPKTFDS----------DD 463
Query: 868 LMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKS-LNVG--KEYARKSNMLILRSAMQ 924
L+ LD + I H L + +R T F L+ ++ R + S
Sbjct: 464 LIPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 925 VDV---------HMEDNDNNEQEMI 940
++ ++ DND + ++
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLV 545
Score = 55.2 bits (132), Expect = 1e-07
Identities = 86/582 (14%), Positives = 183/582 (31%), Gaps = 173/582 (29%)
Query: 19 ILYAKQQDQRSTTFEKSLNVGKEYARKSNMLI--LRSAMIKHNICVKISIQYVMQTYNVN 76
L +KQ++ E+ L Y L+ +++ + ++ ++ I+ + YN N
Sbjct: 70 TLLSKQEEMVQKFVEEVLR--INY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 77 -LY-------IQLHRKLSESLSSLKELFLVMFY-----------LELYYFPHPIMENQLN 117
++ +Q + KL ++L L+ V+ L++ + + + +++
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKV-QCKMD 181
Query: 118 FS-FYLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYK--SN 174
F F+L N+ + P +++ + + N K +
Sbjct: 182 FKIFWL-------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 175 SIKESIRR--GHDDLGDHYLDCGDLSNA-------LKCYSR----ARDYCTNGKHVVDMC 221
SI+ +RR + L ++ NA L C + R K V D
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRF-----KQVTDFL 281
Query: 222 LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTA 281
+ L + S L TPD E K + K
Sbjct: 282 SAATTTHISLDHHSMTL--------TPD--EVKS----LLLK------------------ 309
Query: 282 ARFFLQAHFDYCDFPE---LLSPNNIATYGGLC--ALATFDRSELEKQVIFSSGFKLFLE 336
+L D P +P ++ LAT+D + ++ + L
Sbjct: 310 ---YLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 337 -LEP-QLRDILVQF------------------YNSKYATCLNLLAQIMDNLLLDMYIAPH 376
LEP + R + + ++ + + ++ ++ L++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 377 VNTLY-------TQIRN-----RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLIL 424
++ ++ N R+++ +++ + D + + L
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI---------------PPYL 469
Query: 425 DGQIQARIDSHNKILYAKQQDQRSTTFEKS-LNVGKEYARKSNMLILRSAMIKHNICVK- 482
D + I H L + +R T F L+ + +K +R N
Sbjct: 470 DQYFYSHIGHH---LKNIEHPERMTLFRMVFLDF-RFLEQK-----IRHDSTAWNASGSI 520
Query: 483 DNLLLDM-----YIAPHVNTLYTQIRNRALIQYFSPYLSADL 519
N L + YI + Y ++ N I F P + +L
Sbjct: 521 LNTLQQLKFYKPYICDNDPK-YERLVN--AILDFLPKIEENL 559
Score = 52.2 bits (124), Expect = 9e-07
Identities = 69/491 (14%), Positives = 140/491 (28%), Gaps = 133/491 (27%)
Query: 501 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQTHTRTNDFKVAAGLAELATR--------K 552
Q + + ++ F + + V D + + A T K
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 553 YKTAARFFLQAHFDYCDFPELLSPNNIATYGGLC-ALATFDRS-ELEKQDLESYANSYTG 610
+ + F++ E+L N Y L + T R + + +
Sbjct: 75 QEEMVQKFVE---------EVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 611 LARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKL--------SESLSSL 662
++F V+ R + + ++ + + + L + S
Sbjct: 122 DNQVFAKYNVS------RLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 663 KELFLVMFYLELYYF-------PHPIMENQLNFSFYLNSTG-ALPDVASSGNMGPQDIPT 714
K ++++ P ++E + ++ + D +S+ + I
Sbjct: 175 K--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 715 -LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKC 773
L LL + L L +++N ++ + L C
Sbjct: 233 ELRRLLKSKPYENC---LLVLL-NVQN------AKAWN---------AFN-------LSC 266
Query: 774 YSR----ARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSGF 829
+ R K V D + L + S L TPD + +
Sbjct: 267 --KILLTTRF-----KQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLLK-- 309
Query: 830 KLFLELEPQLRDILVQFYNSKYATCLN--LLAQIMALENELMTLILDGQIQARIDSHNKI 887
+L+ PQ D+ + N L+ I I DG A D+ +
Sbjct: 310 --YLDCRPQ--DLPRE------VLTTNPRRLSIIAES-------IRDGL--ATWDNWKHV 350
Query: 888 LYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMQVDVHM---------EDNDNNEQE 938
D+ +T E SLNV + + L S H+ D ++
Sbjct: 351 NC----DKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 939 MIIVE--NASL 947
+++ + SL
Sbjct: 406 VVVNKLHKYSL 416
Score = 48.7 bits (115), Expect = 9e-06
Identities = 59/367 (16%), Positives = 104/367 (28%), Gaps = 100/367 (27%)
Query: 2 TLILDGQIQARI--DSHNKILYAKQQDQRSTTFEKSLNVGK----EYARKSNMLILR--S 53
T L I D H+ L D+ + K L+ +N L +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 54 AMIKHNICVKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIME 113
I+ + + + N + +L + SL+ L+ + L FP
Sbjct: 335 ESIRDGLA---TWDNW-KHVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFP----- 382
Query: 114 NQLNFSFYLNSTGALPDVASSGNMGPQDIP--TLDPLLIETKNKKAAMKLEKLDNDL--- 168
P IP L + + + + KL
Sbjct: 383 ---------------PSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 169 KNYKSNSIKESIRRGHDDLGDHYLDCGDL-SNALKCYSRARDYCTNG--KHVVDMCLNVI 225
K K ++I SI + +L + L + + Y+ + + ++ +D
Sbjct: 419 KQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----- 471
Query: 226 RVSVYLQNWSHV---LSYVNKAEATP---------DFAEGK--DNNQAVFTKLKVAAGLA 271
Y +SH+ L + E F E K ++ A + L
Sbjct: 472 ----YF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 272 ELATRKYKTAARFFLQAH-------FDYCDFPELLSPNNIAT-YGGLCALATFDRS---- 319
+L + YK + DF + N I + Y L +A
Sbjct: 526 QL--KFYK---PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 320 -ELEKQV 325
E KQV
Sbjct: 581 EEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-08
Identities = 121/722 (16%), Positives = 214/722 (29%), Gaps = 246/722 (34%)
Query: 83 RKLSESLSSLKELFLVMFYLELYYFPHP--IMENQLNFSFYLNSTGALPDVASSGNMGPQ 140
R L+ S SL+ + LV P + +QL F LP +
Sbjct: 7 RPLTLSHGSLEHVLLV---------PTASFFIASQLQEQF----NKILP--EPTEGFAAD 51
Query: 141 DIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNA 200
D PT L L + + ++ K + + + + YL+ D+
Sbjct: 52 DEPTTPAEL-------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--- 101
Query: 201 LKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260
H + L + ++ + +Y+ A K +N A+
Sbjct: 102 ---------------HALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSAL 145
Query: 261 FTKLKVAAGLAELATRKYKTAARFFLQAHF-------DYCDFPELLSPNNI-ATYGGLCA 312
F V G A+ F DY F EL + TY L
Sbjct: 146 FRA--VGEG-----------NAQLVAI--FGGQGNTDDY--FEELRD---LYQTYHVLVG 185
Query: 313 ---------LATFDRSELEKQVIFSSGFKL--FLELEPQLR---DILVQFYNSKYATC-L 357
L+ R+ L+ + +F+ G + +LE P D L+ S +C L
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLL----SIPISCPL 240
Query: 358 NLLAQIMDNLLLDMYIAPHVNTLYT--QIRN--RALIQYFSPYLSADLNKMSVA------ 407
+ Q L Y+ +T ++R+ + + ++A ++
Sbjct: 241 IGVIQ------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDSWESF 292
Query: 408 FNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNM 467
F + +A+ ++ I G R + + E SL + S M
Sbjct: 293 FVSVRKAI--TVLFFI--G---VR--CY---EAYPNTSLPPSILEDSLENNEGVP--SPM 338
Query: 468 L----ILRSAMIKHNICVKDNLLLDMYIAPHVNTLYTQIRN--RALIQYFSPYLS---AD 518
L + + + + K N L P + + N + L+ +S
Sbjct: 339 LSISNLTQEQVQDY--VNKTNSHL-----PAGKQVEISLVNGAKNLV------VSGPPQS 385
Query: 519 LNKMSVAFNTTIQTHTRTNDFKVAAGL----AELATRKYKTAARF------FLQAHFDYC 568
L N T++ K +GL + RK K + RF F H
Sbjct: 386 L----YGLNLTLR------KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHL- 431
Query: 569 DFPELLSPNNIATYGGLCALATFDRSELEKQDLESYANSYTGLARLFRLIYVADHCPALR 628
L P A+ +L +DL S+
Sbjct: 432 -----LVP---AS-------------DLINKDLVKNNVSFNA------------------ 452
Query: 629 HEALRMAIQYVMQTYN-VNLYIQLHRKLSESL-SSLKELFLVMFYLELYYFPHPI-MENQ 685
+ +++ V T++ +L R LS S+ + + + + P+ E
Sbjct: 453 -KDIQIP---VYDTFDGSDL-----RVLSGSISERIVDCIIRL----------PVKWETT 493
Query: 686 LNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKK-----AAMKLEKLDNDLKN 740
F +T L D GP L L K+ A L+ +D
Sbjct: 494 TQFK----ATHIL-D------FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Query: 741 YK 742
+K
Sbjct: 543 FK 544
Score = 47.4 bits (112), Expect = 2e-05
Identities = 71/468 (15%), Positives = 132/468 (28%), Gaps = 153/468 (32%)
Query: 468 LILRSAMIKHNICVKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN 527
L L ++H + V + +Q++ + FN
Sbjct: 9 LTLSHGSLEHVLLVPTAS----FFI------ASQLQEQ--------------------FN 38
Query: 528 TTIQTHTRT--NDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGL 585
+ T D + AEL + FL Y L+ P+ + + +
Sbjct: 39 KILPEPTEGFAADDEPTT-PAELVGK--------FLG----YVS--SLVEPSKVGQFDQV 83
Query: 586 --CALATFDRSELEKQDLESYANSY-----TGLARLFRLI---YVADHC---PALRHE-- 630
L F+ LE D+ + A T L + LI A P +
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 631 ALRMAIQ------YVM---QTYNVNLYIQ-LHRKLSESLSSLKELFLVMFYLELYYFPHP 680
AL A+ + Q N + Y + L R L ++ L + L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQG-NTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 681 IMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLD---------PLLIETKNKKAAMKL 731
++ + F+ LN L + P + P D PL+
Sbjct: 202 TLDAEKVFTQGLNILEWLEN--------PSNTPDKDYLLSIPISCPLIGVI--------- 244
Query: 732 EKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 791
L +Y + G+L + LK + + + +V
Sbjct: 245 -----QLAHY------VVTAKLLG------FTPGELRSYLKGAT------GHSQGLVTAV 281
Query: 792 LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSGFKLFLELEPQLRDILVQFYNSKY 851
I + +W S+ + V+F G + + Y
Sbjct: 282 --AIAET---DSWE---SFF---VSVRKAITVLFFIG------VRCY------EAY-PNT 317
Query: 852 ATCLNLLAQIMALENELMTLIL------DGQIQARIDSHNKILYAKQQ 893
+ ++L + + + +L Q+Q ++ N L A +Q
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 44.2 bits (103), Expect = 4e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 597 EKQDLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQ 637
EKQ L+ S +L Y D PAL A++ ++
Sbjct: 18 EKQALKKLQAS-------LKL-YADDSAPAL---AIKATME 47
Score = 38.4 bits (88), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 155 KKAAMKLEKLDNDLKNYKSNS-----IKESI 180
+K A+K KL LK Y +S IK ++
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKATM 46
Score = 38.4 bits (88), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 725 KKAAMKLEKLDNDLKNYKSNS-----IKESI 750
+K A+K KL LK Y +S IK ++
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKATM 46
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 34.8 bits (80), Expect = 0.15
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 754 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 813
L D L GD + R + H + + RV Q + + +
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLAL--HPGH-PEAVARLGRVRWTQQRHAEAAVLLQQ 82
Query: 814 A-EATPDFAEVIFSSG---------------FKLFLELEPQLRDILVQFYNSKYATC 854
A +A P+ + G + +L P+ I Q N + C
Sbjct: 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Score = 32.5 bits (74), Expect = 0.85
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 243
L D L GD + R + H + + RV Q + + +
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLAL--HPGH-PEAVARLGRVRWTQQRHAEAAVLLQQ 82
Query: 244 A-EATPDFAE 252
A +A P+
Sbjct: 83 ASDAAPEHPG 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 32.7 bits (75), Expect = 0.72
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 148 LLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
L ++ A L ++ +++ LGD L + A++ ++ A
Sbjct: 661 LALKVGQLTLARDLLTDESAEMKWRA-------------LGDASLQRFNFKLAIEAFTNA 707
Query: 208 RDY 210
D
Sbjct: 708 HDL 710
Score = 32.7 bits (75), Expect = 0.72
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 718 LLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
L ++ A L ++ +++ LGD L + A++ ++ A
Sbjct: 661 LALKVGQLTLARDLLTDESAEMKWRA-------------LGDASLQRFNFKLAIEAFTNA 707
Query: 778 RDY 780
D
Sbjct: 708 HDL 710
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 31.8 bits (72), Expect = 1.2
Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 40/179 (22%)
Query: 139 PQDIPTLDPLL--IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGD 196
IP L + K+ + A + +++++ K +S +KE G Y G
Sbjct: 111 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER--------GTVYFKEGK 162
Query: 197 LSNALKCYSRARDYCTNGKHVVD---MCLNVIRVSVY---------LQNWSHVLSYVNKA 244
AL Y + + + +R++ + LQ +S + NKA
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222
Query: 245 EATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN 303
+N + + + G A LA ++ A F + L PNN
Sbjct: 223 -----LELDSNNEKGLSRR-----GEAHLAVNDFELARADFQKVL--------QLYPNN 263
Score = 29.5 bits (66), Expect = 5.0
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 38/164 (23%)
Query: 709 PQDIPTLDPLL--IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGD 766
IP L + K+ + A + +++++ K +S +KE G Y G
Sbjct: 111 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER--------GTVYFKEGK 162
Query: 767 LSNALKCYSRARDYCTNGKHVVD---MCLNVIRVSVY---------LQNWSHVLSYVNKA 814
AL Y + + + +R++ + LQ +S + NKA
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222
Query: 815 -EATPDFAEVIFSSG---------------FKLFLELEPQLRDI 842
E + + + G F+ L+L P +
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: e.25.1.1
Length = 671
Score = 31.6 bits (70), Expect = 1.6
Identities = 45/344 (13%), Positives = 101/344 (29%), Gaps = 20/344 (5%)
Query: 466 NMLILRSAMIKHNICVKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVA 525
+ ++ + ++K I V + D P V +Y + I L +D
Sbjct: 72 SSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYI 131
Query: 526 FNTTIQTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGL 585
T+ D + + + + + Q PEL S Y L
Sbjct: 132 NFTSSLPRNLLEDLAQQVSITGKSDKI----KQVYDQYLDFIVTEPELFSLEISNAYLTL 187
Query: 586 CALATFDRSELEKQDLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNV 645
T + E + A+ I + E + + ++ + +
Sbjct: 188 NDPKTTE--EEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVI 245
Query: 646 NLYIQLHRKLSESLSSLKELFLVM--------------FYLELYYFPHPIMENQLNFSFY 691
N L + S + + +++ Y + + + N +
Sbjct: 246 NTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLE 305
Query: 692 LNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIR 751
G A DI D +E + E ++ L YK + + + +
Sbjct: 306 SKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRK 365
Query: 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVI 795
G ++ D + + + ++ + T K+ +D +N+
Sbjct: 366 TGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIF 409
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 30.7 bits (70), Expect = 1.9
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 154 NKKAAMKLEKLDNDLKNY-KSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
+ + + +N K++ ++ R + LG YL G+ A +A
Sbjct: 9 HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA 63
Score = 30.7 bits (70), Expect = 1.9
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 724 NKKAAMKLEKLDNDLKNY-KSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
+ + + +N K++ ++ R + LG YL G+ A +A
Sbjct: 9 HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA 63
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 29.4 bits (66), Expect = 2.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN--KILY 440
++RN L Q A L+ +++ +A+EN L+ + GQ+ ++ +IL
Sbjct: 37 EMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 96
Query: 441 AKQQDQRSTT 450
Q TT
Sbjct: 97 KVSQQTEKTT 106
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI,
protein structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Length = 80
Score = 28.1 bits (63), Expect = 3.2
Identities = 10/69 (14%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN--KILYAK 442
+ + ++Q +P + L + + ++ +E +L+ L G+++++I ++L
Sbjct: 9 KKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV 68
Query: 443 QQDQRSTTF 451
+R
Sbjct: 69 AGKKREIKI 77
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 30.6 bits (69), Expect = 3.5
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 792 LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSGFKLFLELE--PQLRDILVQFYNS 849
L + +S+ + Y E F++ + S F E+ P+ L Y S
Sbjct: 56 LKINEISINNKKLVEGEEYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKS 115
Query: 850 KYATC 854
K
Sbjct: 116 KNIIV 120
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 30.2 bits (68), Expect = 3.6
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC--TNGKHVV 218
L L+ L+ I ++ + Y GD A++ + +A +
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261
Query: 219 DMCLNVIRVSVYLQNWSHVLSYVNKA 244
+ + ++ +
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEG 287
Score = 30.2 bits (68), Expect = 3.6
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 731 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC--TNGKHVV 788
L L+ L+ I ++ + Y GD A++ + +A +
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261
Query: 789 DMCLNVIRVSVYLQNWSHVLSYVNKA 814
+ + ++ +
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEG 287
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.9 bits (67), Expect = 4.2
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 153 KNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDY 210
K +AA L+K YK + + L D A KC +
Sbjct: 170 KFDEAAASLQKE---KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Score = 29.9 bits (67), Expect = 4.2
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 723 KNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDY 780
K +AA L+K YK + + L D A KC +
Sbjct: 170 KFDEAAASLQKE---KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 29.9 bits (68), Expect = 4.5
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 14/172 (8%)
Query: 726 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK 785
K +K + + K +S +K + D D + A+ + + C
Sbjct: 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD- 153
Query: 786 HVVDMCLNVIRVSVYLQNWSHVLSYVNKA-EATPDFAEVIFSSGFKLFLELEPQLRDILV 844
++ + +S + A + D E + L+ +L L
Sbjct: 154 --AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS-TLYYQLG-DHELSLS 209
Query: 845 QF-----YNSKYATCLNLLAQIMALE---NELMTLILDGQIQARIDSHNKIL 888
+ + + C Q+ L LI DG+ + ++
Sbjct: 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 261
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 29.3 bits (65), Expect = 4.8
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 148 LLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
L +E N AA+ K ND ++ L L G+ S A Y
Sbjct: 14 LALEYGNLDAALDEAKKLNDSITWER-------------LIQEALAQGNASLAEMIYQTQ 60
Query: 208 RDYC 211
+
Sbjct: 61 HSFD 64
Score = 29.3 bits (65), Expect = 4.8
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 718 LLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
L +E N AA+ K ND ++ L L G+ S A Y
Sbjct: 14 LALEYGNLDAALDEAKKLNDSITWER-------------LIQEALAQGNASLAEMIYQTQ 60
Query: 778 RDYC 781
+
Sbjct: 61 HSFD 64
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 29.1 bits (65), Expect = 5.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 409 NTTIQALENELMTLILDGQIQARIDSHNKIL-YAKQQ 444
+ I ++ L LI G ++ I ++ L +KQ
Sbjct: 158 DVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Length = 86
Score = 27.3 bits (60), Expect = 6.5
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 150 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
+ + K ++E+ +++ +I D ++L+ GDL A +C A
Sbjct: 7 LRRETLKWLERIEERVKEIE--GDEGFMRNIEAYISD-SRYFLEKGDLVRAFECVVWA 61
Score = 27.3 bits (60), Expect = 6.5
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
+ + K ++E+ +++ +I D ++L+ GDL A +C A
Sbjct: 7 LRRETLKWLERIEERVKEIE--GDEGFMRNIEAYISD-SRYFLEKGDLVRAFECVVWA 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 29.2 bits (65), Expect = 6.6
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 7/141 (4%)
Query: 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYL-DCGDLSNALKCYSRARDYCTNGKH--- 216
++ L+N ++ + +LG+ D D + A+ CY A ++ +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 217 VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATR 276
+ + + +K + + + + GL +LA
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF---LKKGLCQLAAT 213
Query: 277 KYKTAARFFLQAHFDYCDFPE 297
AAR + + +F +
Sbjct: 214 DAVAAARTLQEGQSEDPNFAD 234
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function;
NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Length = 116
Score = 27.5 bits (61), Expect = 8.6
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN--KILYAK 442
A+ + P L+++++ QA+E L LI + +I IL
Sbjct: 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGI 101
Query: 443 QQDQRSTTFEK 453
+ Q S K
Sbjct: 102 AKQQNSQNNSK 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,124,946
Number of extensions: 849579
Number of successful extensions: 2005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1948
Number of HSP's successfully gapped: 103
Length of query: 971
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 868
Effective length of database: 3,825,930
Effective search space: 3320907240
Effective search space used: 3320907240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)