RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11733
         (971 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 9/78 (11%), Positives = 27/78 (34%)

Query: 374 APHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433
           +   + L   +    L+     Y +    ++           E     +I +G++   ID
Sbjct: 6   SGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFID 65

Query: 434 SHNKILYAKQQDQRSTTF 451
             + I++ + ++    + 
Sbjct: 66  QIDGIVHFETREASGPSS 83



 Score = 34.4 bits (79), Expect = 0.007
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 852 ATCLNLLAQIMALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTF 900
              L + A     E     +I +G++   ID  + I++ + ++    + 
Sbjct: 37  GALLEIPAA--KAEKIASQMITEGRMNGFIDQIDGIVHFETREASGPSS 83



 Score = 28.2 bits (63), Expect = 1.0
 Identities = 5/32 (15%), Positives = 16/32 (50%)

Query: 1  MTLILDGQIQARIDSHNKILYAKQQDQRSTTF 32
            +I +G++   ID  + I++ + ++    + 
Sbjct: 52 SQMITEGRMNGFIDQIDGIVHFETREASGPSS 83


>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 30.6 bits (68), Expect = 0.38
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 243
             +LG+      D   ALK Y +A++        +    N   V     +++       K
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 244 A-EATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288
           A E   +  E        + ++    G +     KYK A  F+ ++
Sbjct: 64  AIEVGRENREDYRQIAKAYARI----GNSYFKEEKYKDAIHFYNKS 105


>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 27.8 bits (62), Expect = 1.1
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 155 KKAAMKLEKLDNDLKNYKS-NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
           ++    LE+++  +K  +       +I     D   ++L+ GDL  A +C   A
Sbjct: 7   RETLKWLERIEERVKEIEGDEGFMRNIEAYISD-SRYFLEKGDLVRAFECVVWA 59



 Score = 27.8 bits (62), Expect = 1.1
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 725 KKAAMKLEKLDNDLKNYKS-NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
           ++    LE+++  +K  +       +I     D   ++L+ GDL  A +C   A
Sbjct: 7   RETLKWLERIEERVKEIEGDEGFMRNIEAYISD-SRYFLEKGDLVRAFECVVWA 59


>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 75

 Score = 26.2 bits (58), Expect = 4.9
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 207
           L ++ +   +    ++ E      DD   +YL+ GD   +  C + A
Sbjct: 16  LMEMKSIKLSDDEEAVVERALNYRDD-SVYYLEKGDHITSFGCITYA 61



 Score = 26.2 bits (58), Expect = 4.9
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 731 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA 777
           L ++ +   +    ++ E      DD   +YL+ GD   +  C + A
Sbjct: 16  LMEMKSIKLSDDEEAVVERALNYRDD-SVYYLEKGDHITSFGCITYA 61


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 27.6 bits (61), Expect = 6.4
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 167 DLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIR 226
           DL+    +S++           +         N       A+ + T G  +VD  L+V+R
Sbjct: 67  DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNW-----AKGHYTEGAELVDSVLDVVR 121



 Score = 27.6 bits (61), Expect = 6.4
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 737 DLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIR 796
           DL+    +S++           +         N       A+ + T G  +VD  L+V+R
Sbjct: 67  DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNW-----AKGHYTEGAELVDSVLDVVR 121


>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), N-terminal domain {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 122

 Score = 26.4 bits (58), Expect = 8.7
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 154 NKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNAL 201
           + +    LE+++ D+    + +++E       DLG       D++  L
Sbjct: 1   DDRRDALLERINLDIPAAVAQALRE-------DLGGEVDAGNDITAQL 41



 Score = 26.4 bits (58), Expect = 8.7
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 724 NKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNAL 771
           + +    LE+++ D+    + +++E       DLG       D++  L
Sbjct: 1   DDRRDALLERINLDIPAAVAQALRE-------DLGGEVDAGNDITAQL 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,379,824
Number of extensions: 157847
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 25
Length of query: 971
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 877
Effective length of database: 1,116,976
Effective search space: 979587952
Effective search space used: 979587952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)