Query psy11734
Match_columns 817
No_of_seqs 327 out of 4424
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 17:34:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.9E-25 6.6E-30 251.5 26.8 400 200-793 25-435 (451)
2 3o7q_A L-fucose-proton symport 99.9 1.5E-23 5E-28 235.2 30.0 395 204-786 27-427 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.9 2.3E-23 7.8E-28 237.6 25.5 441 203-795 13-475 (491)
4 4gc0_A D-xylose-proton symport 99.9 3.5E-23 1.2E-27 236.0 23.4 312 446-797 7-468 (491)
5 1pw4_A Glycerol-3-phosphate tr 99.9 1E-24 3.4E-29 245.6 8.3 305 1-436 125-436 (451)
6 2cfq_A Lactose permease; trans 99.9 4.4E-24 1.5E-28 238.2 13.1 389 198-793 2-401 (417)
7 2gfp_A EMRD, multidrug resista 99.9 2E-22 6.8E-27 221.2 8.1 354 207-777 4-362 (375)
8 3o7q_A L-fucose-proton symport 99.9 6.4E-22 2.2E-26 221.8 12.1 260 1-366 123-409 (438)
9 2gfp_A EMRD, multidrug resista 99.8 4.4E-21 1.5E-25 210.5 4.7 254 2-364 95-352 (375)
10 2xut_A Proton/peptide symporte 99.8 6.5E-19 2.2E-23 202.4 17.8 177 202-433 11-198 (524)
11 4aps_A DI-OR tripeptide H+ sym 99.8 1.5E-19 5E-24 206.0 11.4 318 1-364 114-448 (491)
12 2cfq_A Lactose permease; trans 99.7 1.8E-18 6.2E-23 192.6 6.7 288 3-436 108-402 (417)
13 4gc0_A D-xylose-proton symport 99.7 7.7E-18 2.6E-22 191.6 6.0 319 1-438 132-467 (491)
14 2xut_A Proton/peptide symporte 99.6 2E-15 7E-20 173.2 8.7 80 2-82 116-198 (524)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.9e-25 Score=251.48 Aligned_cols=400 Identities=13% Similarity=0.118 Sum_probs=291.5
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHH
Q psy11734 200 LYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRK 279 (817)
Q Consensus 200 ~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~ 279 (817)
.+.+.++...+..++.....+.+...+|.+.++ + .+..+.|++.....++..+++++.|+++||+|||+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-------- 94 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------- 94 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH--------
Confidence 344556677777777777777777788887776 5 999999999999999999999999999999999986
Q ss_pred HHHHHHhHHHHHHHHhhhc----cCCChhHHHHHHHHHHHHhhhccccccccccccCC-CchhHHHHHHHhhhhhccccc
Q psy11734 280 VFATLGAVLPGVGALAASY----VGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVA 354 (817)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lg~~~~ 354 (817)
+..+..+..++.+...+ .. +.+...+...+.+.+.+...+.......|..| ++|++++++.+....+|..++
T Consensus 95 --l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 171 (451)
T 1pw4_A 95 --LPAGLILAAAVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171 (451)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred --HHHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766 44 55556666666666777777777778788666 899999999999999999999
Q ss_pred ccccceecccccccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhheeec
Q psy11734 355 PLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFG 434 (817)
Q Consensus 355 ~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 434 (817)
|.+.+.+.+..+ +|+..|++.+++.++..++..++.
T Consensus 172 ~~~~~~l~~~~g--------------------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 172 PLLFLLGMAWFN--------------------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHHHHTC--------------------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--------------------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988776531 288899988888776665554443
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeecccccccc
Q psy11734 435 SGEVQYWNESILPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTTLDA 514 (817)
Q Consensus 435 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (817)
+++++...++..+ + . + + ..++
T Consensus 208 ~~~~~~~~~~~~~-------------------------------~-------~--~--------~----~~~~------- 228 (451)
T 1pw4_A 208 RDTPQSCGLPPIE-------------------------------E-------Y--K--------N----DYPD------- 228 (451)
T ss_dssp CCSSTTTCCCSCT-------------------------------T-------T--C--------C----C----------
T ss_pred cCCHhhcCCCChh-------------------------------h-------h--c--------c----cccc-------
Confidence 4332211111000 0 0 0 0 0000
Q ss_pred cccCChhhHHHHHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhhhcccCc
Q psy11734 515 KFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVGEDLET 594 (817)
Q Consensus 515 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~~a~~~s~~~l~~~R~l~Gig~~~~~ 594 (817)
+..-+. .++...| +.
T Consensus 229 ~~~~~~------------------------~~~~~~~-----------------------------------------~~ 243 (451)
T 1pw4_A 229 DYNEKA------------------------EQELTAK-----------------------------------------QI 243 (451)
T ss_dssp ----------------------------------CCT-----------------------------------------HH
T ss_pred cchhhh------------------------hcccccc-----------------------------------------cc
Confidence 000000 0000000 01
Q ss_pred hhHHhhcCHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccccc
Q psy11734 595 PWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYL--IVRDIL 672 (817)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--g~~~~~ 672 (817)
..++.+|+|.++...+..++.....+.+..+.|.|+++.+|+++.+++...+...++.+++.++.|+++||+ ++|+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 136778899999999999999999999999999999998899999999999999999999999999999999 776532
Q ss_pred ccchhhHHHHHHHHHHHH-HHHHHHHhhcC-chHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CchHHHHHHHHHHHHH
Q psy11734 673 SRTNVRKVFATLGAVLPG-VGALAASYVGC-NTSMVAICFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCV 749 (817)
Q Consensus 673 ~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 749 (817)
..+..+.. ++++++...+. +.+.......+.+++.+...+.......|..| ++|+++.|+.+...++
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 ----------GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp ----------HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 23333333 45555444432 44555555555666666666666777888887 6799999999999999
Q ss_pred -HHhHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11734 750 -SGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLFGS 793 (817)
Q Consensus 750 -g~~i~p~~~g~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 793 (817)
++.++|.+.|.+.|..+ |+..|++.+++.+++.+..++..+
T Consensus 394 ~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHSSC---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876 788899888888888777766543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=1.5e-23 Score=235.24 Aligned_cols=395 Identities=13% Similarity=0.101 Sum_probs=275.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHH
Q psy11734 204 PVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFAT 283 (817)
Q Consensus 204 ~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~ 283 (817)
.+.......++............|.+. +.+|.|..+.|++.....++..+++++.|+++||+|||+. +.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~----------l~ 95 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG----------II 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH----------HH
Confidence 344555566666666666777777755 4589999999999999999999999999999999999986 77
Q ss_pred HHhHHHHHHHHhh---hccCCChhHHHHHHHHHHHHhhhccccccccccccCC-CchhHHHHHHHhhhhhcccccccccc
Q psy11734 284 LGAVLPGVGALAA---SYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVG 359 (817)
Q Consensus 284 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lg~~~~~~i~g 359 (817)
.+..+..++.+.. ...+ +.+...+...+.+.+.+...+....+..|..| |+|+.++++.+....+|..++|.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666 4433 56666666666677777777777777777665 79999999999999999999999999
Q ss_pred eec-ccccccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhheeeccccc
Q psy11734 360 FLT-QNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSGEV 438 (817)
Q Consensus 360 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 438 (817)
.+. +..+..+.... ....+.....+ +.....+|++.|++.+++.++..++..+...++.
T Consensus 175 ~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 175 SLILSNVPHQSQDVL-------------------DKMSPEQLSAY-KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_dssp HHHHTSSCCCCHHHH-------------------HHSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred HHHhccccccccccc-------------------ccCCcchhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 888 44321000000 00000000000 0001124899998777766655554443322111
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeecccccccccccC
Q psy11734 439 QYWNESILPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTTLDAKFDW 518 (817)
Q Consensus 439 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (817)
++++++ + +-
T Consensus 235 ~~~~~~--~-------------------------------------------------------------------~~-- 243 (438)
T 3o7q_A 235 QSDNHS--D-------------------------------------------------------------------AK-- 243 (438)
T ss_dssp TTTCCC--C-------------------------------------------------------------------SS--
T ss_pred cccccc--c-------------------------------------------------------------------cc--
Confidence 110000 0 00
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhhhcccCchhHH
Q psy11734 519 DERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVGEDLETPWAA 598 (817)
Q Consensus 519 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~~a~~~s~~~l~~~R~l~Gig~~~~~~~~~ 598 (817)
+ . + .+.++++
T Consensus 244 ----------------------------~------------------------~--~----------------~~~~~~~ 253 (438)
T 3o7q_A 244 ----------------------------Q------------------------G--S----------------FSASLSR 253 (438)
T ss_dssp ----------------------------T------------------------T--S----------------HHHHHHH
T ss_pred ----------------------------c------------------------c--c----------------hhhhHHH
Confidence 0 0 0 0124567
Q ss_pred hhcCHhHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchh
Q psy11734 599 ILSSLPVWSLIISEVGHDYGFYLISSDLPKY-MSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNV 677 (817)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~ 677 (817)
++|+|+++...+..++.....+.+..+.|.| +++.+|.+..+++...+...+++.+++++.|+++||+++|+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----- 328 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL----- 328 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-----
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 8899999999999999999999999999999 8888899999999999999999999999999999999987643
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhhhhhhhccccCCCchHHHHHHHHHHHHHHHhHHHHH
Q psy11734 678 RKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLT 757 (817)
Q Consensus 678 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~p~~ 757 (817)
..+.++..++++++.+.+ +.+ ......+.+++.+...+.......|..|++++++.++.. ...+++.++|.+
T Consensus 329 -----~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 329 -----AAYALIAMALCLISAFAG-GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp -----HHHHHHHHHHHHHHHHCC-HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcC-CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHH
Confidence 355566666666555543 333 333445555666667777778877888866999999877 778999999999
Q ss_pred HHHhhcCCccccHHHHHHHHHHHHHHHHH
Q psy11734 758 VGFLTQNKTLLEWRVVFWIMFLTLFISNV 786 (817)
Q Consensus 758 ~g~~~~~~g~~~~~~~~~~~~~~~~i~~~ 786 (817)
.|.+.|..|. ++..|++.+++.++..+
T Consensus 401 ~g~l~~~~g~--~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 401 MGFVSDAAGN--IPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTS--SGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHHHH
Confidence 9999998752 55666665555444433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=2.3e-23 Score=237.55 Aligned_cols=441 Identities=14% Similarity=0.039 Sum_probs=285.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhhHHHHh-----hCCcccccchhhhhhHHHHHHHHhhhHHHHHH-HhhcCcccchh
Q psy11734 203 LPVWSLIISEVGHDYGLYLISTDLPKYMSEV-----IGLSVAENGVLSALPFLIMWLVSMSSSALADF-FIARDILSRTN 276 (817)
Q Consensus 203 ~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk-~g~r~~~~~~~ 276 (817)
+.++...+..++....+++...++|.|+++. +|.|..+.+++.....++..++++++|+++|| +|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~----- 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA----- 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 4577888888888999999999999999998 89999999999999999999999999999999 899986
Q ss_pred hHHHHHHHHhHHHHHHHHhhhccCCChhHHHHHHHHHHHHhhhccccccccccccCC-Cc--hhHHHHHHHhhhhhcccc
Q psy11734 277 VRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSP-NF--SGTIMALSNGLGCVSGMV 353 (817)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~--~g~a~g~~~~~~~lg~~~ 353 (817)
+..+.++..++.+.....+ +.....+...+.+.+.+...+.......|..| ++ |+++.++.+....+|..+
T Consensus 88 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 88 -----VFWGGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp -----HHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 7777777777777776654 55555555666666676777777777777655 66 888999999999999999
Q ss_pred cccccceecccccccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhheee
Q psy11734 354 APLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLF 433 (817)
Q Consensus 354 ~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~ 433 (817)
+|.+.+.+.+.. +|+..|++.++..+++.+...+.
T Consensus 162 ~~~~~~~l~~~~---------------------------------------------g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 162 APLIVGAAQEAA---------------------------------------------GYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHS---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh---------------------------------------------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999887754 69999999988888777766554
Q ss_pred cccccccccCC--C--CchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeeccc
Q psy11734 434 GSGEVQYWNES--I--LPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTY 509 (817)
Q Consensus 434 ~~~~~~~~~~~--~--~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (817)
.++..++..++ . .+.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 218 (491)
T 4aps_A 197 GKKTLDPHYLRPTDPLAPEEVK---------------------------------------------------------- 218 (491)
T ss_dssp HHTTCCSCCSCCSCCCSHHHHH----------------------------------------------------------
T ss_pred CcccccccccCCCCccccchhH----------------------------------------------------------
Confidence 33322111000 0 000000
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhhh
Q psy11734 510 TTLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVG 589 (817)
Q Consensus 510 ~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~~a~~~s~~~l~~~R~l~Gig 589 (817)
...+..+......+... .. -...++....+............. ...+.. ..
T Consensus 219 -~~~~~~g~~l~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~------------- 269 (491)
T 4aps_A 219 -PLLVKVSLAVAGFIAII--VV----------MNLVGWNSLPAYINLLTIVAIAIP-VFYFAW--MI------------- 269 (491)
T ss_dssp -HHHHHCCCCCHHHHHHH--HH----------HHHHSSCCTTHHHHHHHHHHHHHH-HHHHHH--HC-------------
T ss_pred -HHHHHHHHHHHHHHHHH--HH----------HHhccCcccccchhhhhHHHHHHH-HHHHHH--Hh-------------
Confidence 00000000000000000 00 001122222221111110000000 000000 00
Q ss_pred cccCchhHHhhcCHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11734 590 EDLETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVR 669 (817)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~g~~ 669 (817)
.....+..+..+....+......++....+.....++|.|+++..+.+..+.+.......+...++.++.+++.||++||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r 349 (491)
T 4aps_A 270 SSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN 349 (491)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence 00000001111222345555566666666777778899999998888877788888889999999999999999999998
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhh--------cCchHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CchHHHH
Q psy11734 670 DILSRTNVRKVFATLGAVLPGVGALAASYV--------GCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIM 740 (817)
Q Consensus 670 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 740 (817)
+.. +...+..+..+.+++++++... +.+.+.......+.+++.+...+.......|..| +.||+++
T Consensus 350 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 350 QPS-----SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred CCC-----chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 642 2333345555555555554442 1234555555666666666667777788888888 6799999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy11734 741 ALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLFGSGE 795 (817)
Q Consensus 741 g~~~~~~~~g~~i~p~~~g~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 795 (817)
|+.+...++|+.++|.+.+.+.+.. +...|..++++.+++.+..+...++.
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAKS----EVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGSS----TTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 45677777777777777666654433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=3.5e-23 Score=235.99 Aligned_cols=312 Identities=13% Similarity=0.138 Sum_probs=217.1
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeecccccccccccCChhhHHH
Q psy11734 446 LPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTTLDAKFDWDERTQGV 525 (817)
Q Consensus 446 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~ 525 (817)
++|.|.+..+.+++.++..+|...++.++|.+.+.- ..+...+.+.++++.|+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~ 59 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVF---------------------------VAPQNLSESAANSLLGF 59 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHH---------------------------TGGGCCCHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCCCCCCcccHHHHHHH
Confidence 456677777788899999999999998888776600 00000122345678899
Q ss_pred HHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHH------------------HhhhcchHHHHHHHHHHh
Q psy11734 526 ILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTP------------------LIAHSGPVSMTVLRFLEG 587 (817)
Q Consensus 526 ~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~------------------~a~~~s~~~l~~~R~l~G 587 (817)
+.+++.+|+.++++++|+++||+|||+++.++.+++.+++++++ +++ |+++++++|+++|
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G 137 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGG 137 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 477 9999999999999
Q ss_pred hhcc----------------------------------------------------------------------------
Q psy11734 588 VGED---------------------------------------------------------------------------- 591 (817)
Q Consensus 588 ig~~---------------------------------------------------------------------------- 591 (817)
+|.|
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 9988
Q ss_pred ---cCch--------------------------------------------hHHhhcCHhHHHH-HHHHHHHHHHHHHHH
Q psy11734 592 ---LETP--------------------------------------------WAAILSSLPVWSL-IISEVGHDYGFYLIS 623 (817)
Q Consensus 592 ---~~~~--------------------------------------------~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 623 (817)
++.| .....+.++.... ....+......+.+.
T Consensus 218 ~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4gc0_A 218 YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVL 297 (491)
T ss_dssp GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHH
Confidence 0000 0001112223332 233333344455556
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh---c
Q psy11734 624 SDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYV---G 700 (817)
Q Consensus 624 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~ 700 (817)
.+.|.+.++ .+.+............+...++.++.+++.||+|||+.+ ..+.....++++.+... .
T Consensus 298 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~----------~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 298 YYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ----------IIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH----------HHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh----------ccchHHHHHHHHHHHHHHhcc
Confidence 666665555 688888888888888899999999999999999998643 34444444444443321 2
Q ss_pred CchHHHHHHHHHHHHHHh-hhhhhhhhhccccCC-CchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCc---cccHHHHHH
Q psy11734 701 CNTSMVAICFTIGMAFMG-FCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKT---LLEWRVVFW 775 (817)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~i~p~~~g~~~~~~g---~~~~~~~~~ 775 (817)
.+.+..+....+...+.+ ...+..+.+.+|++| +.|+++.|+.+..+++++.++|.+.+.+.+... ..++...|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~ 446 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 222333333333222222 334566688999999 789999999999999999999998887765421 011345678
Q ss_pred HHHHHHHHHHHHHHHhccCccc
Q psy11734 776 IMFLTLFISNVFFVLFGSGEVQ 797 (817)
Q Consensus 776 ~~~~~~~i~~~~~~~~~~~~~~ 797 (817)
+.+++++++.++.+++.++.|.
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHheecCCCC
Confidence 8888888888777666554443
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=1e-24 Score=245.65 Aligned_cols=305 Identities=15% Similarity=0.156 Sum_probs=229.9
Q ss_pred CcccccCCcccccchhhhhhhhccCCCCcchhHHHhHhhhhhhHHHHhhhhhhhcccccC-cchhHHHHhhhHHHHHhhh
Q psy11734 1 MVEMSNFPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTAS-WANVFYIFGAIAVLWFAFW 79 (817)
Q Consensus 1 ~R~l~G~g~g~~~~~~~~~i~~~~p~~~rg~~~gi~~~~~~~G~~ig~~~~~~l~~~~~g-Wr~~f~i~~~~~~i~~~~~ 79 (817)
.|+++|++.+...|...+++.|++|+|+|++++++...+..+|..++|.+++++.+ ..| ||++|++.+++.++..++.
T Consensus 125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-WFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH-HTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999888 888 9999999998888888777
Q ss_pred hheeccCCCCCCCCCHHHHhHhhhhccccccccccccccCccccchhhhhhhhchhhccccccccccccCCccchhHHHH
Q psy11734 80 CILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFL 159 (817)
Q Consensus 80 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
++++||+|++.+..++++.+...+ .+.+..++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------------------------------------- 237 (451)
T 1pw4_A 204 FAMMRDTPQSCGLPPIEEYKNDYP--DDYNEKAEQE-------------------------------------------- 237 (451)
T ss_dssp HHHCCCSSTTTCCCSCTTTCCC----------------------------------------------------------
T ss_pred HhhccCCHhhcCCCChhhhccccc--ccchhhhhcc--------------------------------------------
Confidence 777887765443221111100000 0000000000
Q ss_pred HHHHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCCccc
Q psy11734 160 STALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVA 239 (817)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 239 (817)
....+...++++|+|.++...+..++.....++...+.|.|+++.+|++..
T Consensus 238 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 288 (451)
T 1pw4_A 238 -----------------------------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 288 (451)
T ss_dssp ------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred -----------------------------cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 000111246788999999999999999999999999999999998899999
Q ss_pred ccchhhhhhHHHHHHHHhhhHHHHHHH--hhcCcccchhhHHHHHHHHhHHHH-HHHHhhhccCC-ChhHHHHHHHHHHH
Q psy11734 240 ENGVLSALPFLIMWLVSMSSSALADFF--IARDILSRTNVRKVFATLGAVLPG-VGALAASYVGC-NTSMVAIFFTIGMA 315 (817)
Q Consensus 240 ~ag~~~~~~~i~~~ig~~~~G~l~dk~--g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~~ 315 (817)
+++++..+..++.++++++.|++.||+ ++|+. ...+..+.. +++..+...++ +.+.......+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA----------TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH----------HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh----------HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 77764 444444433 55555554432 34444444444444
Q ss_pred HhhhccccccccccccCC-CchhHHHHHHHhhhhh-cccccccccceecccccccCCCCCCCCCccchhhcccCcccccc
Q psy11734 316 FMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCV-SGMVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSG 393 (817)
Q Consensus 316 ~~g~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~l-g~~~~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
+.+...+.......+..| ++||+++|+.+.+.++ |++++|.+.|.+.|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---------------------------- 410 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---------------------------- 410 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------------------
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 444555555566666555 6899999999999999 9999999999998875
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHHHHhhhhheeeccc
Q psy11734 394 MVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSG 436 (817)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 436 (817)
+|+..|++.+++.+++.++.++..++
T Consensus 411 -----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 411 -----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp -----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58889999988888888776665543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=4.4e-24 Score=238.15 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=248.2
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhh
Q psy11734 198 AILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNV 277 (817)
Q Consensus 198 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~ 277 (817)
+++|||+++......++....+.....++|.|+++.+|.|+.+.|++.....++..++++++|+++||+|||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~------ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------ 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCH------
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------
Confidence 35899999999888888888888888999999998889999999999999999999999999999999999986
Q ss_pred HHHHHHHHhHHHHHH---HHhhhccCCChhHHHHHHHHHHHHhhhccccccccccccC---CCchhHHHHHHHhhhhhcc
Q psy11734 278 RKVFATLGAVLPGVG---ALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLS---PNFSGTIMALSNGLGCVSG 351 (817)
Q Consensus 278 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---p~~~g~a~g~~~~~~~lg~ 351 (817)
+..+..+..+. +....+.............+.+.+.+...+.......+.. +++++.++|..+....+|.
T Consensus 76 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 151 (417)
T 2cfq_A 76 ----LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW 151 (417)
T ss_dssp ----HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 44444333221 1111111000000001111111111111111112222222 2356777888888888999
Q ss_pred cccccccceecccccccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhhe
Q psy11734 352 MVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFV 431 (817)
Q Consensus 352 ~~~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~ 431 (817)
+++|.+.+.+.+. +|+..|++.++..++..+...
T Consensus 152 ~~~~~l~~~l~~~----------------------------------------------~~~~~f~~~~~~~~~~~~~~~ 185 (417)
T 2cfq_A 152 ALGASIVGIMFTI----------------------------------------------NNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HHHHHHHHHHHHH----------------------------------------------CSHHHHTTTTTTTTTHHHHSC
T ss_pred HHHHHHHHHHHHh----------------------------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 9999888876542 477788766655443333333
Q ss_pred eecccccccccCCCCchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeeccccc
Q psy11734 432 LFGSGEVQYWNESILPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTT 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (817)
+..+++++. .++ + + .+ ++++
T Consensus 186 ~~~~~~~~~-~~~--~-------------------------------~------------------~~----~~~~---- 205 (417)
T 2cfq_A 186 FAKTDAPSS-ATV--A-------------------------------N------------------AV----GANH---- 205 (417)
T ss_dssp SSCCCCSCS-SCS--S-------------------------------S------------------SS----SSCC----
T ss_pred HcCcccccc-ccc--c-------------------------------c------------------cc----cccc----
Confidence 322221100 000 0 0 00 0000
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhhhcc
Q psy11734 512 LDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVGED 591 (817)
Q Consensus 512 ~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~~a~~~s~~~l~~~R~l~Gig~~ 591 (817)
++. +
T Consensus 206 --~~~----------------------------------------------------------~---------------- 209 (417)
T 2cfq_A 206 --SAF----------------------------------------------------------S---------------- 209 (417)
T ss_dssp --CCC----------------------------------------------------------C----------------
T ss_pred --ccc----------------------------------------------------------c----------------
Confidence 000 0
Q ss_pred cCchhHHhhcCHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11734 592 LETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGL---SVAENGVLSALPFLIMWLVSMSSSALADYLIV 668 (817)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~g~ 668 (817)
..++++++|+|+++...+..++....++.+..+.|.|+++.++. +....+...+...+...++.++.|+++||+||
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 288 (417)
T 2cfq_A 210 -LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 01234567788888777666666666667777899999875542 23445677777888889999999999999998
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CchHHHHHHH-HHH
Q psy11734 669 RDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALS-NGL 746 (817)
Q Consensus 669 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~ 746 (817)
|+.+ ..+..+.++.++.+...+ +.+.......+.+++.....+..+....|..| +.||++.+.. +..
T Consensus 289 ~~~l----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 357 (417)
T 2cfq_A 289 KNAL----------LLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF 357 (417)
T ss_dssp HHHH----------HHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHH----------HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 7643 355555555555554433 44444444333444444444555678888888 7799999994 888
Q ss_pred HHHHHhHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11734 747 GCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLFGS 793 (817)
Q Consensus 747 ~~~g~~i~p~~~g~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 793 (817)
+.+|+.++|.+.|.+.|..+ ++..|.+.+++.+++.+..+...+
T Consensus 358 ~~lg~~~gp~l~G~l~~~~g---~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 358 KQLAMIFMSVLAGNMYESIG---FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHTHHHHTHHHHSH---HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HhHHHHHhhhhHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88999999999999998764 778888888888888776655433
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=2e-22 Score=221.23 Aligned_cols=354 Identities=14% Similarity=0.106 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHh
Q psy11734 207 SLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGA 286 (817)
Q Consensus 207 ~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~ 286 (817)
...+..++...........+|.+.++ +|.|..+.+++.....++..+++++.|+++||+|||+. ...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~----------~~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV----------ILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC----------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh----------HHHHH
Confidence 34555566666666667777776655 79999999999999999999999999999999999997 66777
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHhhhccccccccccccCC-CchhHHHHHHHhhhhhcccccccccceecccc
Q psy11734 287 VLPGVGALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQNI 365 (817)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lg~~~~~~i~g~l~~~~ 365 (817)
.+..++.......+ +.+.......+.+.+.+...+.......|..| |+|++++++.+....+|..++|.+.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 73 SIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 77676666665554 45555555555666666666666777777654 89999999999999999999999999877653
Q ss_pred cccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhheeecccccccccCCC
Q psy11734 366 ISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSGEVQYWNESI 445 (817)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (817)
+|+..|++.+++.++..+...+..|+++++ +++
T Consensus 152 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 184 (375)
T 2gfp_A 152 ---------------------------------------------NWRACYLFLLVLCAGVTFSMARWMPETRPV-DAP- 184 (375)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT-TCC-
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCC-Ccc-
Confidence 699999998888877766444433332211 000
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhccEEEEeeecccccccccCCCCCCCCCCCCCCceeeecccccccccccCChhhHHH
Q psy11734 446 LPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTTLDAKFDWDERTQGV 525 (817)
Q Consensus 446 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~ 525 (817)
+ + +
T Consensus 185 -~-------------------------------~-----------------------------------~---------- 187 (375)
T 2gfp_A 185 -R-------------------------------T-----------------------------------R---------- 187 (375)
T ss_dssp -C-------------------------------C-----------------------------------C----------
T ss_pred -c-------------------------------c-----------------------------------c----------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHhhhhchhhccccCchHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhhhcccCchhHHhhcCHhH
Q psy11734 526 ILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVGEDLETPWAAILSSLPV 605 (817)
Q Consensus 526 ~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~l~~~~i~~~l~~~a~~~s~~~l~~~R~l~Gig~~~~~~~~~~l~~~~~ 605 (817)
.+.++++.+|+|++
T Consensus 188 ------------------------------------------------------------------~~~~~~~~~~~~~~ 201 (375)
T 2gfp_A 188 ------------------------------------------------------------------LLTSYKTLFGNSGF 201 (375)
T ss_dssp ------------------------------------------------------------------TTTCSTHHHHHHHH
T ss_pred ------------------------------------------------------------------HHHHHHHHhcCcch
Confidence 01223566778899
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHH
Q psy11734 606 WSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLG 685 (817)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~ 685 (817)
+...+..++.....+.+..+.|.|+++.+|.|+.+++.......++.+++.++.+++.||++++. ..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------------~~~ 269 (375)
T 2gfp_A 202 NCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------------WQS 269 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 99999999999999999999999999988999999999999999999999999999999998632 122
Q ss_pred HHH-HHHHHH--HHHhh-cCchHHHHHHHHHHHHHHhhhhhhhhhhccccCCCchHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy11734 686 AVL-PGVGAL--AASYV-GCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFL 761 (817)
Q Consensus 686 ~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~p~~~g~~ 761 (817)
... ...+.. ..... +.+.+.......+.+++.+...+.......|..|++||++.|+.+..+++|+.++|.+.|.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 111111 12221 11334444555566666667777777888888888899999999999999999999999998
Q ss_pred hcCCccccHHHHHHHH
Q psy11734 762 TQNKTLLEWRVVFWIM 777 (817)
Q Consensus 762 ~~~~g~~~~~~~~~~~ 777 (817)
.+..+ +...+...
T Consensus 350 ~~~~~---~~~~~~~~ 362 (375)
T 2gfp_A 350 PQTGQ---GSLGLLMT 362 (375)
T ss_dssp HHHHH---HHHHHHHH
T ss_pred hcCCc---ccHHHHHH
Confidence 77643 66655553
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.86 E-value=6.4e-22 Score=221.84 Aligned_cols=260 Identities=13% Similarity=0.104 Sum_probs=202.0
Q ss_pred CcccccCCcccccchhhhhhhhccCCCCcchhHHHhHhhhhhhHHHHhhhhhhhc-ccccC-------------------
Q psy11734 1 MVEMSNFPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIM-SFTAS------------------- 60 (817)
Q Consensus 1 ~R~l~G~g~g~~~~~~~~~i~~~~p~~~rg~~~gi~~~~~~~G~~ig~~~~~~l~-~~~~g------------------- 60 (817)
.|+++|+|.|...|...+++.|++|+|+|++++++.+....+|..+++.+++++. + ..+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS-NVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT-SSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccccccCCcchhhhhh
Confidence 3889999999999999999999999999999999999999999999999999998 5 444
Q ss_pred ------cchhHHHHhhhHHHHHhhhhheeccCCCCCCCCCHHHHhHhhhhccccccccccccccCccccchhhhhhhhch
Q psy11734 61 ------WANVFYIFGAIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGY 134 (817)
Q Consensus 61 ------Wr~~f~i~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (817)
||+.|++.+.+.++..++.++. +.||++++.++++ +
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~----------------~-------------------- 243 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNHSDA----------------K-------------------- 243 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTCCCCS----------------S--------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH--cCCcccccccccc----------------c--------------------
Confidence 9999998877666665554442 2233221110000 0
Q ss_pred hhccccccccccccCCccchhHHHHHHHHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHHHHHHHHH
Q psy11734 135 TLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVG 214 (817)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 214 (817)
+++.+.++++++|+|.++...+..++
T Consensus 244 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (438)
T 3o7q_A 244 ------------------------------------------------------QGSFSASLSRLARIRHWRWAVLAQFC 269 (438)
T ss_dssp ------------------------------------------------------TTSHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred ------------------------------------------------------ccchhhhHHHHHhChHHHHHHHHHHH
Confidence 00113457789999999999999999
Q ss_pred HHHHHHHHhhchhhH-HHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHhHHHHHHH
Q psy11734 215 HDYGLYLISTDLPKY-MSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGA 293 (817)
Q Consensus 215 ~~~~~~~~~~~~p~~-l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 293 (817)
.....+....|.|.| +++.+|++..+++.......+++.+++++.|+++||+++|+. ...+..+..+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----------~~~~~~~~~~~~ 339 (438)
T 3o7q_A 270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV----------LAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH----------HHHHHHHHHHHH
Confidence 999999999999999 888889999999999999999999999999999999999875 566666666666
Q ss_pred HhhhccCCChhHHHHHHHHHHHHhhhccccccccccccCCCchhHHHHHHHhhhhhcccccccccceeccccc
Q psy11734 294 LAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNII 366 (817)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lg~~~~~~i~g~l~~~~~ 366 (817)
+.+.+.+ +.... ..+.+.+++.+...+.......+..|++++++.++.+ ...+|++++|.+.|.+.|..|
T Consensus 340 ~~~~~~~-~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 340 LISAFAG-GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHCC-HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC-CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 6655554 33333 3334444555556666666666666666889998887 778999999999999998863
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.81 E-value=4.4e-21 Score=210.46 Aligned_cols=254 Identities=15% Similarity=0.121 Sum_probs=201.1
Q ss_pred cccccCCcccccchhhhhhhhccCCCCcchhHHHhHhhhhhhHHHHhhhhhhhcccccCcchhHHHHhhhHHHHHhhhhh
Q psy11734 2 VEMSNFPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFGAIAVLWFAFWCI 81 (817)
Q Consensus 2 R~l~G~g~g~~~~~~~~~i~~~~p~~~rg~~~gi~~~~~~~G~~ig~~~~~~l~~~~~gWr~~f~i~~~~~~i~~~~~~~ 81 (817)
|+++|++.+...|...+++.|++|+|||++++++.+....+|..++|.+++++.+ ..|||+.|++.+++.++..+..++
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999 889999999998888877776666
Q ss_pred eeccCCCCCCCCCHHHHhHhhhhccccccccccccccCccccchhhhhhhhchhhccccccccccccCCccchhHHHHHH
Q psy11734 82 LCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLST 161 (817)
Q Consensus 82 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
.+||+|++++.. +
T Consensus 174 ~~~~~~~~~~~~------------------~------------------------------------------------- 186 (375)
T 2gfp_A 174 WMPETRPVDAPR------------------T------------------------------------------------- 186 (375)
T ss_dssp SSCCCSTTTCCC------------------C-------------------------------------------------
T ss_pred HCcccCCCCccc------------------c-------------------------------------------------
Confidence 666543221100 0
Q ss_pred HHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCCccccc
Q psy11734 162 ALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAEN 241 (817)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a 241 (817)
+.+.++++++|+|+++...+..++.....+....+.|.|+++.+|+++.++
T Consensus 187 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (375)
T 2gfp_A 187 -----------------------------RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV 237 (375)
T ss_dssp -----------------------------CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 012235678899999999999999999999999999999999889999999
Q ss_pred chhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHhHH-HHHHHHh--hhcc-CCChhHHHHHHHHHHHHh
Q psy11734 242 GVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVL-PGVGALA--ASYV-GCNTSMVAIFFTIGMAFM 317 (817)
Q Consensus 242 g~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~ 317 (817)
+.......++..+++++.+++.||.+++ ...+... ...+... .... .++.+.......+.+.+.
T Consensus 238 g~~~~~~~~~~~~~~~~~~~l~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 305 (375)
T 2gfp_A 238 SILFILPIPAAFFGAWFAGRPNKRFSTL------------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA 305 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTTTHHHHH------------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999873 2222222 2222221 1111 113333444445555666
Q ss_pred hhccccccccccccCCCchhHHHHHHHhhhhhcccccccccceeccc
Q psy11734 318 GFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQN 364 (817)
Q Consensus 318 g~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lg~~~~~~i~g~l~~~ 364 (817)
+...+.......|..|++||++.|+.+..+++|+.++|.+.|.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 306 GMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66777777777887779999999999999999999999999987664
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=6.5e-19 Score=202.43 Aligned_cols=177 Identities=14% Similarity=0.014 Sum_probs=140.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhC------CcccccchhhhhhHHHHHHHHhhhHHHHHHH-hhcCcccc
Q psy11734 202 SLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIG------LSVAENGVLSALPFLIMWLVSMSSSALADFF-IARDILSR 274 (817)
Q Consensus 202 ~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g------~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~-g~r~~~~~ 274 (817)
+|.++...+..++....+++...++|.|+++.+| .|..+.+++.....++..++.+++|+++||+ |||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 4567888888999999999999999999998889 9999999999999999999999999999999 99885
Q ss_pred hhhHHHHHHHHhHHHHHHHHhhhccCCChhHHHHHHHHHHHHhhhccccccccccccCC-CchhHHHHH---HHhhhhhc
Q psy11734 275 TNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMAL---SNGLGCVS 350 (817)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~a~g~---~~~~~~lg 350 (817)
+..+.++..++.+.......+.+...+...+.+.+.+...+.......|..| ++|+++.+. .+....+|
T Consensus 88 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 88 -------ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 6667777777766666554245555555556666666677777777777665 678766655 89999999
Q ss_pred ccccccccceecccccccCCCCCCCCCccchhhcccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhh
Q psy11734 351 GMVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFF 430 (817)
Q Consensus 351 ~~~~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 430 (817)
.+++|.+.+.+.+.. +|+..|++.+++.+++.+..
T Consensus 161 ~~~g~~~~~~l~~~~---------------------------------------------g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 161 SFFASLSMPLLLKNF---------------------------------------------GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTSTHHHHTS---------------------------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---------------------------------------------cHHHHHHHHHHHHHHHHHHH
Confidence 999999988877653 69999999988877776665
Q ss_pred eee
Q psy11734 431 VLF 433 (817)
Q Consensus 431 ~~~ 433 (817)
.+.
T Consensus 196 ~~~ 198 (524)
T 2xut_A 196 WLG 198 (524)
T ss_dssp HSS
T ss_pred HHh
Confidence 543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.79 E-value=1.5e-19 Score=206.00 Aligned_cols=318 Identities=14% Similarity=0.055 Sum_probs=191.3
Q ss_pred CcccccCCcccccchhhhhhhhccCCCC--cchhHHHhHhhhhhhHHHHhhhhhhhcccccCcchhHHHHhhhHHHHHhh
Q psy11734 1 MVEMSNFPKGTTFPALCTLLAQWSPPNE--RSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFGAIAVLWFAF 78 (817)
Q Consensus 1 ~R~l~G~g~g~~~~~~~~~i~~~~p~~~--rg~~~gi~~~~~~~G~~ig~~~~~~l~~~~~gWr~~f~i~~~~~~i~~~~ 78 (817)
.|+++|+|.|...|...++++|++|+++ |+++.++++.+..+|..++|.+++++.+ ..|||++|++.++..++..+.
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE-AAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999 7778888999999999999999999999 899999999987766666555
Q ss_pred hhheeccCCCCCC-CC----CHHHHhHhhhhccccccccccccccCccccchhhhhhhhchhhccccccccccccCCccc
Q psy11734 79 WCILCFNDPKSHP-YI----SEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHT 153 (817)
Q Consensus 79 ~~~~~~~~p~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
.++..|+.+++++ .. ++++.++..+.... .-....+.++. ....++......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~l~~~~~~~~~----------~~~~~~~~~~~~ 249 (491)
T 4aps_A 193 YYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSL-------------AVAGFIAIIVV----------MNLVGWNSLPAY 249 (491)
T ss_dssp HHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCC-------------CCHHHHHHHHH----------HHHHSSCCTTHH
T ss_pred HHHhCcccccccccCCCCccccchhHHHHHHHHH-------------HHHHHHHHHHH----------HHhccCcccccc
Confidence 5444333221111 00 11111100000000 00000000000 000000000000
Q ss_pred hhHHH-HHHHHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy11734 154 LGLGF-LSTALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSE 232 (817)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~ 232 (817)
..... ........ ......++.+.+..+..+....+...+..++....+.....++|.|+++
T Consensus 250 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 250 INLLTIVAIAIPVF-----------------YFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp HHHHHHHHHHHHHH-----------------HHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHH-----------------HHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 00000 00000000 0000011111111122233345555656666666777778889999999
Q ss_pred hhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHhHHHHHHHHhhhcc--------CCChh
Q psy11734 233 VIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYV--------GCNTS 304 (817)
Q Consensus 233 ~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 304 (817)
..+.+..+.+....+..++..++.++.|++.||++||+.. +...+..+..+..+++..+... ..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-----SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL 387 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH
Confidence 8888888899999999999999999999999999998641 1222335555555555554432 12344
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCC-CchhHHHHHHHhhhhhcccccccccceeccc
Q psy11734 305 MVAIFFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQN 364 (817)
Q Consensus 305 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lg~~~~~~i~g~l~~~ 364 (817)
.......+.+.+.+...+.......|..| ++||+++|+.+...++|++++|.+.+.+.|.
T Consensus 388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 388 WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555555666666666777777666 7899999999999999999999998876543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=1.8e-18 Score=192.65 Aligned_cols=288 Identities=13% Similarity=0.119 Sum_probs=189.2
Q ss_pred ccccCCcccccchhhhhhhhccCC--CCcchhHHHhHhhhhhhHHHHhhhhhhhcccccCcchhHHHHhhhHHHHHhhhh
Q psy11734 3 EMSNFPKGTTFPALCTLLAQWSPP--NERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFGAIAVLWFAFWC 80 (817)
Q Consensus 3 ~l~G~g~g~~~~~~~~~i~~~~p~--~~rg~~~gi~~~~~~~G~~ig~~~~~~l~~~~~gWr~~f~i~~~~~~i~~~~~~ 80 (817)
.+.|++.|..++.....+.++.++ ++|+.+.|.......+|..++|.+++++.+ .+||+.|++.+...++..+..+
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~ 185 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555566543 466888889988999999999999999987 5899999988776555444433
Q ss_pred heeccCCCCCCCCCHHHHhHhhhhccccccccccccccCccccchhhhhhhhchhhccccccccccccCCccchhHHHHH
Q psy11734 81 ILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLS 160 (817)
Q Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+ .+++|+++ .++++++ +. +++
T Consensus 186 ~-~~~~~~~~--~~~~~~~------~~----~~~---------------------------------------------- 206 (417)
T 2cfq_A 186 F-AKTDAPSS--ATVANAV------GA----NHS---------------------------------------------- 206 (417)
T ss_dssp S-SCCCCSCS--SCSSSSS------SS----CCC----------------------------------------------
T ss_pred H-cCcccccc--ccccccc------cc----ccc----------------------------------------------
Confidence 3 33222111 0000000 00 000
Q ss_pred HHHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHHHHHHHHHHHHHHHHHhhchhhHHHHhhCC---c
Q psy11734 161 TALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGL---S 237 (817)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~l~~~~g~---s 237 (817)
+....++++++|+|+++...+..++....++....++|.|+++.++. +
T Consensus 207 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (417)
T 2cfq_A 207 -----------------------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp -----------------------------CCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred -----------------------------cccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 00112356788999998777766666666666667799998775442 3
Q ss_pred ccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHhHHHHHHHHhhhccCCChhHHHHHHHHHHHHh
Q psy11734 238 VAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFM 317 (817)
Q Consensus 238 ~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (817)
....+.......++..++.++.|+++||+++|+. +..+..+.++.+..+...+ +.........+.....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 326 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA----------LLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEV 326 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----------HHHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH----------HHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 4445677777788889999999999999999875 5556666666555554443 3333333322233333
Q ss_pred hhccccccccccccCC-CchhHHHHH-HHhhhhhcccccccccceecccccccCCCCCCCCCccchhhcccCcccccccc
Q psy11734 318 GFCYASIRVNPIDLSP-NFSGTIMAL-SNGLGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMV 395 (817)
Q Consensus 318 g~~~~~~~~~~~~~~p-~~~g~a~g~-~~~~~~lg~~~~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
+...+....+..|..| +.||++.++ .+..+.+|+.++|.+.|.+.|+.
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~------------------------------ 376 (417)
T 2cfq_A 327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------------------------------ 376 (417)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS------------------------------
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc------------------------------
Confidence 3333334556677666 789999999 48889999999999999888764
Q ss_pred ccccccccccCCccchhHHHHHHHHHHHHHhhhhheeeccc
Q psy11734 396 APLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSG 436 (817)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 436 (817)
+++..|.+.+++.+++.++..++.|+
T Consensus 377 ---------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 377 ---------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 58888999988888888776655544
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.69 E-value=7.7e-18 Score=191.64 Aligned_cols=319 Identities=13% Similarity=0.109 Sum_probs=197.9
Q ss_pred CcccccCCcccccchhhhhhhhccCCCCcchhHHHhHhhhhhhHHHHhhhhhhhcc-------cccCcchhHHHHhhhHH
Q psy11734 1 MVEMSNFPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMS-------FTASWANVFYIFGAIAV 73 (817)
Q Consensus 1 ~R~l~G~g~g~~~~~~~~~i~~~~p~~~rg~~~gi~~~~~~~G~~ig~~~~~~l~~-------~~~gWr~~f~i~~~~~~ 73 (817)
.|+++|+|.|+..+.+..+++|+.|+++|++..+..+.+..+|..+++.++..+.. ...+||+.+.+..+..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 39999999999999999999999999999999999999999999999999887664 12457777777766665
Q ss_pred HHHhhhhheeccCCCCCCCCCH----HHHhHhhhhccccccccccccccCccccchhhhhhhhchhhccccccccccccC
Q psy11734 74 LWFAFWCILCFNDPKSHPYISE----KERKYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFG 149 (817)
Q Consensus 74 i~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (817)
+..+..+ ++ ||++++... ++..+..++....+..+++..+.++
T Consensus 212 ~~~~~~~-~~---peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~----------------------------- 258 (491)
T 4gc0_A 212 LFLMLLY-TV---PESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH----------------------------- 258 (491)
T ss_dssp HHHHHGG-GS---CCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred hhhhhhh-cC---CCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHH-----------------------------
Confidence 5544443 34 444433221 1111111111100000000000000
Q ss_pred CccchhHHHHHHHHHHhhhhcccCcCCchhhhHHhhhccCcccCchHHHHhhchhHHH-HHHHHHHHHHHHHHHhhchhh
Q psy11734 150 GKHTLGLGFLSTALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTPWAAILYSLPVWS-LIISEVGHDYGLYLISTDLPK 228 (817)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~~~~~~~p~ 228 (817)
+..++++.......++.+.... .....+....+.+.+..|.|.
T Consensus 259 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4gc0_A 259 ------------------------------------SLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE 302 (491)
T ss_dssp ------------------------------------HHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------------------------------------HHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH
Confidence 0000011112233444444433 333444445556667777777
Q ss_pred HHHHhhCCcccccchhhhhhHHHHHHHHhhhHHHHHHHhhcCcccchhhHHHHHHHHhHHHHHHHHhhhc---cCCChhH
Q psy11734 229 YMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASY---VGCNTSM 305 (817)
Q Consensus 229 ~l~~~~g~s~~~ag~~~~~~~i~~~ig~~~~G~l~dk~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 305 (817)
+.++ .+.+..+.........+...++.++++++.||+|||+. ...+.....+++..+.. ...+...
T Consensus 303 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 303 VFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL----------QIIGALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH----------HHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch----------hccchHHHHHHHHHHHHHHhcccchHH
Confidence 7665 57887777788888899999999999999999999985 44555444444443322 2222233
Q ss_pred HHHHHHHHHHHhhh-ccccccccccccCC-CchhHHHHHHHhhhhhcccccccccceecccccccCCCCCCCCCccchhh
Q psy11734 306 VAIFFTIGMAFMGF-CYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSGTIMA 383 (817)
Q Consensus 306 ~~~~~~l~~~~~g~-~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lg~~~~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~ 383 (817)
....+.+...+... ..+....+..|+.| +.|+++.|+.+.++++++.+++.+.+.+.+....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~---------------- 435 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL---------------- 435 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 33333333322222 33445678888888 7899999999999999999999988776654210
Q ss_pred cccCccccccccccccccccccCCccchhHHHHHHHHHHHHHhhhhheeeccccc
Q psy11734 384 LSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSGEV 438 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 438 (817)
....++...|++.+++.+++.++..++.+|++
T Consensus 436 -----------------------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 436 -----------------------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp -----------------------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred -----------------------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 00113556788888888888876665555543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.57 E-value=2e-15 Score=173.17 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=70.9
Q ss_pred cccccCCcccccchhhhhhhhccCCCCcchhHHH---hHhhhhhhHHHHhhhhhhhcccccCcchhHHHHhhhHHHHHhh
Q psy11734 2 VEMSNFPKGTTFPALCTLLAQWSPPNERSFMTAL---VFAGVQLGSVLATFCSGLIMSFTASWANVFYIFGAIAVLWFAF 78 (817)
Q Consensus 2 R~l~G~g~g~~~~~~~~~i~~~~p~~~rg~~~gi---~~~~~~~G~~ig~~~~~~l~~~~~gWr~~f~i~~~~~~i~~~~ 78 (817)
|+++|++.+...|...+++.|++|+++|+++.+. ......+|..++|.+++++.+ ..|||++|++.+++.++..+.
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-NFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999887777 999999999999999999998 899999999988776665555
Q ss_pred hhhe
Q psy11734 79 WCIL 82 (817)
Q Consensus 79 ~~~~ 82 (817)
.++.
T Consensus 195 ~~~~ 198 (524)
T 2xut_A 195 FWLG 198 (524)
T ss_dssp HHSS
T ss_pred HHHh
Confidence 4443
Done!