RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11734
(817 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 153 bits (389), Expect = 5e-40
Identities = 69/209 (33%), Positives = 113/209 (54%)
Query: 594 TPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMW 653
P AI SLPVW++ + GH + + ++ + LP ++S V+ +S ENG+LS+LP+L W
Sbjct: 252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311
Query: 654 LVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIG 713
L S+ + LAD+L LS T RK+F +G + PG+ A A Y+ + I T+
Sbjct: 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLA 371
Query: 714 MAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVV 773
A A + +N +DL+P F G I ++ G + G++A G + + W +V
Sbjct: 372 NAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIV 431
Query: 774 FWIMFLTLFISNVFFVLFGSGEVQYWNEK 802
F IM + +F+++FGS E Q W ++
Sbjct: 432 FLIMAFVNILCVIFYLIFGSAERQDWAKE 460
Score = 152 bits (386), Expect = 2e-39
Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 42/256 (16%)
Query: 186 EGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLS 245
+ P AI SLPVW++ + GH + ++ T LP ++S V+ +S ENG+LS
Sbjct: 244 QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLS 303
Query: 246 ALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSM 305
+LP+L WL S+ + LADF + LS T RK+F +G + PG+ A A Y+ +
Sbjct: 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYL 363
Query: 306 VAIFFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNI 365
I T+ A A + +N +DL+P F G I ++ + G + L L NI
Sbjct: 364 TIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITG----LPGFIGGLIASTLAGNI 419
Query: 366 ISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVI 425
+S + + W +VF IM ++
Sbjct: 420 LSQDS--------------------------------------KNVWLIVFLIMAFVNIL 441
Query: 426 SNVFFVLFGSGEVQYW 441
+F+++FGS E Q W
Sbjct: 442 CVIFYLIFGSAERQDW 457
Score = 79.4 bits (196), Expect = 2e-15
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 7 FPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFY 66
+G+ PA ++ +W+PP ERS + + +G QLG+ + SG + W +FY
Sbjct: 143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY 202
Query: 67 IFGAIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSI 105
+FG + W W + +DP HP IS+ E+KY+ S+
Sbjct: 203 VFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSL 241
Score = 63.6 bits (155), Expect = 2e-10
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 449 RYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKT 508
R L + + + + R CL+ + MV K D + N +
Sbjct: 17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVN--KENSTDLACLSAENELDNIKNPN---- 70
Query: 509 YTTLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLT 568
F W QG+ILS+ +YG I+ IP G L+ K+ K ++G+G +++ +++
Sbjct: 71 -------FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVI 123
Query: 569 PLIAHSGPVSMTVLRFLEGVGEDLETP 595
P A G + R ++G+ + +P
Sbjct: 124 PWAAGGGIALVVFCRVIQGLAQGSVSP 150
Score = 58.6 bits (142), Expect = 7e-09
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 40 VQLGSVLATFCS-GLIMSFTASWANVFYIFGAIAVLWFAFWCILCFNDPKSHPYISEKER 98
V + L FCS L +SF NV I I L ++ + +S +
Sbjct: 4 VFASTKLPYFCSFRLFLSFLLHICNVIIIAQRIC-LSLTMVAMVNKENSTDLACLSAENE 62
Query: 99 KYLLDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGF 158
LD+I K+ F W QG+ILSS +YG + IP G L+ K+ K ++G+G
Sbjct: 63 ---LDNI------KNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGM 113
Query: 159 LSTALLTLLTPLVAHSGPVSMTVLRFLEGVGEDLKTP 195
+++++++ P A G + R ++G+ + +P
Sbjct: 114 FLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSP 150
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 52.0 bits (125), Expect = 8e-07
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 13 FPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFGAIA 72
FP + ++A W P +ER+ ++ + LG ++ G I+ SW F I G +
Sbjct: 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-HFSWQWAFIIEGVLG 158
Query: 73 VLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAER--RKDAKFDWDERTQGVI---L 127
++W W DP +E KY++ AE+ + + + + + +
Sbjct: 159 IIWGVLWLKF-IPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRV 217
Query: 128 SSFYYGYTLTHIPGGILSQKFGG--KHTLGLGFLSTALLTLLTPLVA 172
G L +I G F GL L + L +V
Sbjct: 218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVG 264
Score = 47.3 bits (113), Expect = 2e-05
Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 9/187 (4%)
Query: 598 AILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSM 657
+L VW L + + + G + P Y+ Q GLS+ E G +++LP ++ ++
Sbjct: 210 ELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFI--- 266
Query: 658 SSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTI---GM 714
+ + D+L R VFA A++ G+ + ++ + G
Sbjct: 267 ---GMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF 323
Query: 715 AFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVF 774
+G + + N +G L N LG + G+V P+ +G + ++
Sbjct: 324 FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383
Query: 775 WIMFLTL 781
+
Sbjct: 384 VAALALI 390
Score = 46.2 bits (110), Expect = 5e-05
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 524 GVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLR 583
G + SAF +GY++ PGG L +FG + TL + + +FT L VS+ +LR
Sbjct: 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILR 89
Query: 584 FLEGVGE 590
L G E
Sbjct: 90 VLLGAAE 96
Score = 45.0 bits (107), Expect = 1e-04
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 104 SIGAAERRKDAKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTAL 163
S A ++D G + S+F +GY + PGG L +FG + TL + + +
Sbjct: 14 SFAAPMLQEDLGLSAA--QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGV 71
Query: 164 LTLLTPLVAHSGPVSMTVLRFLEGVGE 190
T L VS+ +LR L G E
Sbjct: 72 FTGLQAFAG--AYVSLYILRVLLGAAE 96
Score = 36.2 bits (84), Expect = 0.066
Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 45/246 (18%)
Query: 187 GVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSA 246
G K +L VW L + + + GL T P Y+ + GLS+ E G +++
Sbjct: 199 GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMAS 258
Query: 247 LPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMV 306
LP ++ ++ + D+L R VFA A++ G+ L+ N +
Sbjct: 259 LPGIVGFI------GMILGGRLSDLLLRRGKSLVFARKTAIIAGLV-LSLLMFATNYVNI 311
Query: 307 AIFFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNII 366
+A F +G I
Sbjct: 312 PYAALALVALGFFG-------------LGAGAIG-------------------------W 333
Query: 367 SINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVIS 426
++ + N +G L N LG + G+V P+ +G + ++ +
Sbjct: 334 ALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL 393
Query: 427 NVFFVL 432
+ ++
Sbjct: 394 SYLLLV 399
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 49.3 bits (118), Expect = 4e-06
Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 4/163 (2%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G FPA L+A W PP ER L+ AG LG+ L GL+ S W F I
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILA 158
Query: 70 AIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSS 129
+A+L +L P E +D ++L
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWL---LLALLLFG 215
Query: 130 FYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVA 172
F + LT++P L L+ L + L+
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Score = 45.1 bits (107), Expect = 1e-04
Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 11/236 (4%)
Query: 521 RTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMT 580
R G++ + F G L + GG+L+ FG + + + + +L L+ P
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESK 180
Query: 581 VLRFLEGVGEDLETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAE 640
+ E L W +L PV L+++ + + F+ + + LP Y +V+GLS
Sbjct: 181 RPKPAEEAPAPLVPAWKLLLRD-PVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSALL 238
Query: 641 NGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVG 700
G+L L L+ + + L+D L R + A L +L +G S
Sbjct: 239 AGLLLGLAGLLGAIGRLLLGRLSDRL-------GRRRRLLLALLLLILAALGLALLSLTE 291
Query: 701 CNTSMVAICFTIGMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMVAP 755
+ ++ +G G + ++ DL+P GT L N G + G + P
Sbjct: 292 SSLWLLVALLLLGFGA-GLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 43.6 bits (103), Expect = 3e-04
Identities = 63/284 (22%), Positives = 104/284 (36%), Gaps = 15/284 (5%)
Query: 516 FDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSG 575
G++L+AF GY L G LS +FG + L +G L A+ LL L+ S
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLL--LLFASS 84
Query: 576 PVSMTVLRFLEGVGEDLETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIG 635
+ VLR L+G+G + A + + W E G G L + ++G
Sbjct: 85 LWLLLVLRVLQGLGGGAL--FPAAAALIADWFP-PEERGRALGLLSAGFGLGAALGPLLG 141
Query: 636 LSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALA 695
+A A FLI+ ++++ ++ LA L+ R + ++P L
Sbjct: 142 GLLASLFGWRA-AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLL 200
Query: 696 ASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAP 755
V ++ G AF + S + L GL + G +
Sbjct: 201 RDPV---LWLLLALLLFGFAFFAL---LTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGR 254
Query: 756 LTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLFGSGEVQYW 799
L +G L+ L R + L L ++ + L E W
Sbjct: 255 LLLGRLSDR---LGRRRRLLLALLLLILAALGLALLSLTESSLW 295
Score = 43.2 bits (102), Expect = 4e-04
Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 15/185 (8%)
Query: 608 LIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLI 667
L ++ G L+ LP Y+++ +G+S E G+L L L + L+D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD--- 57
Query: 668 VRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGFCYASIRVN 727
R R+V +G +L +G L + + ++ + + G + +
Sbjct: 58 ------RFGRRRVLL-IGLLLFALGLLLLLFAS-SLWLLLVLRVLQGLGGGALFPAAAAL 109
Query: 728 PIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNV 786
D P G + L + + + PL G L +L WR F I+ + ++ V
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAV 166
Query: 787 FFVLF 791
L
Sbjct: 167 LAALL 171
Score = 40.5 bits (95), Expect = 0.002
Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 8/239 (3%)
Query: 116 FDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSG 175
G++L++F GY L G LS +FG + L +G L AL LL L+ S
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLL--LLFASS 84
Query: 176 PVSMTVLRFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIG 235
+ VLR L+G+G + A + W E G GL L + ++G
Sbjct: 85 LWLLLVLRVLQGLGGGA--LFPAAAALIADWFP-PEERGRALGLLSAGFGLGAALGPLLG 141
Query: 236 LSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALA 295
+A A FLI+ ++++ ++ LA + R + ++P L
Sbjct: 142 GLLASLFGWRA-AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLL 200
Query: 296 ASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVA 354
V + +F A + Y + + LS +G ++ L+ LG + ++
Sbjct: 201 RDPVLWLLLALLLFGFAFFALLT--YLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257
Score = 33.6 bits (77), Expect = 0.43
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 208 LIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFI 267
L ++ G L+ LP Y++E +G+S E G+L L L + L+D F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 268 ARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVN 327
R +L + L L + L AS + ++ + + G + +
Sbjct: 61 RRRVL-------LIGLLLFALGLLLLLFAS----SLWLLLVLRVLQGLGGGALFPAAAAL 109
Query: 328 PIDLSP-NFSGTIMALSNGLGCVSGMVAPLTVGFLTQNI 365
D P G + L + + + PL G L
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 49.2 bits (118), Expect = 5e-06
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 12/188 (6%)
Query: 604 PVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALA 663
+ L ++ +G+Y + + LP Y+ +V+GLS AE G+L +L L L ++ L+
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 664 DYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGFCYAS 723
D R R++ +G +L +G L + ++ +G A
Sbjct: 236 D---------RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 724 IRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFI 783
+ + P GT L N G + G + PL G L + VF I+ +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG---YGGVFLILAALALL 343
Query: 784 SNVFFVLF 791
+ + +L
Sbjct: 344 AALLLLLL 351
Score = 40.4 bits (95), Expect = 0.003
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G +PA L+A+W PP ER L AG LG++L GL+ W +F I
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILA 160
Query: 70 AIAVLWFAFWCIL 82
+ +L L
Sbjct: 161 ILGLLLALLLLFL 173
Score = 39.2 bits (92), Expect = 0.007
Identities = 67/341 (19%), Positives = 119/341 (34%), Gaps = 41/341 (12%)
Query: 116 FDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSG 175
G+I+S+F GY L + G LS +FG + L LG L AL +LL S
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SS 86
Query: 176 PVSMTVLRFLEGVGEDL-------------KTPWAAILYSLPVWSLIISE-VGHDYGLYL 221
+ V RFL G+G L + +G G L
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 222 ISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVF 281
+ +++ ++ + +L ++ L++++ L+ + +
Sbjct: 147 AESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYG-----------LL 195
Query: 282 ATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMA 341
L L V L+A+ G S+ + +G G + + L + A
Sbjct: 196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL--IGLLLAA 253
Query: 342 LSNGLGCVSGMVAPLTV---------GFLTQNIISINPIDLSPNFSGTIMALSNGLGCVS 392
L L ++ +A L V GF ++++ P GT L N G +
Sbjct: 254 LGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313
Query: 393 GMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLF 433
G + PL G L + VF I+ +++ + +L
Sbjct: 314 GALGPLLAGLLLDTGG---YGGVFLILAALALLAALLLLLL 351
Score = 37.3 bits (87), Expect = 0.024
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 508 TYTTLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLL 567
L G+I+SAF GY L + G LS +FG + L LG L A+ +LL
Sbjct: 21 ALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80
Query: 568 TPLIAHSGPVSMTVLRFLEGVGE 590
S + V RFL G+G
Sbjct: 81 LAFA--SSLWLLLVGRFLLGLGG 101
Score = 32.7 bits (75), Expect = 0.70
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G FPAL TL ++ +PP R + L LG L +GL++ T + VF I
Sbjct: 280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILA 338
Query: 70 AIAVLWFAFWCIL 82
A+A+L +L
Sbjct: 339 ALALLAALLLLLL 351
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 38.9 bits (91), Expect = 0.010
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G +P + +W +ER + +G L ++ SW VF + G
Sbjct: 98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157
Query: 70 AIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSS 129
IA++ +L + P+S + E + G AE++++ Q V+L+
Sbjct: 158 IIAIIVSLICFLLLRDSPQS-CGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNK 216
Query: 130 FYYGYTLTHI 139
+ +L ++
Sbjct: 217 VLWYISLGYV 226
Score = 35.8 bits (83), Expect = 0.076
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 124 GVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSGPVSMTVLR 183
G++LSSF Y ++ G +S + + L +G + A++ L + M L
Sbjct: 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFSTSLWVMAALW 90
Query: 184 FLEGVGEDLKTPWAAILY 201
L G+ + + P
Sbjct: 91 ALNGIFQGMGWPPCGRTV 108
Score = 32.7 bits (75), Expect = 0.81
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 524 GVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLR 583
G++LS+F Y ++ G +S + + L +G + AI L + M L
Sbjct: 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFSTSLWVMAALW 90
Query: 584 FLEG 587
L G
Sbjct: 91 ALNG 94
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 38.5 bits (90), Expect = 0.012
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G P L L+++++P R L+F G +G+ + F +G ++ W ++FY+ G
Sbjct: 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-VFGWRSLFYVGG 178
Query: 70 AIAVL 74
+L
Sbjct: 179 IAPLL 183
Score = 32.3 bits (74), Expect = 0.98
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 511 TLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPL 570
+ A++ D G + SA G + G L+ + G + L L ++FTLL L
Sbjct: 42 AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL 101
Query: 571 IAHSGPVSMTVLRFLEGVG 589
+ + +LRFL G+G
Sbjct: 102 A--TNVTQLLILRFLAGLG 118
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 37.2 bits (87), Expect = 0.033
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 5 SNFPKGTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLAT-FCSGLIMSFTASWAN 63
+ + +G +P + W ER ++ +G LA +F W
Sbjct: 127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRA 186
Query: 64 VFYIFGAIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQ 123
FY G IA++ A + + ++ + L I E R D ++E +
Sbjct: 187 AFYFPGIIAII-VALILLF---------LLRDRPQSEGLPPIE--EYRGDPLEIYEEEKE 234
Query: 124 GVILSSF 130
L+++
Sbjct: 235 NEGLTAW 241
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 34.9 bits (80), Expect = 0.18
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 516 FDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFL 559
F G+I SAFY+GY + IP GIL +K K + G
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99
Score = 33.3 bits (76), Expect = 0.50
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 116 FDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFL 159
F G+I S+FY+GY + IP GIL +K K + G
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99
>gnl|CDD|216606 pfam01616, Orbi_NS3, Orbivirus NS3. The function of this Orbivirus
non structural protein is uncertain. However it may play
a role on release of the virus from infected cells.
Length = 194
Score = 33.5 bits (77), Expect = 0.29
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 413 RVVFWIMFLALVISNVFFVLFG----SGEVQYWNESILPARYVLGIMGCMGVTLALMMRS 468
R++ I +A V++ V + S E+++W L + +G T L+ S
Sbjct: 90 RLLRTIELIAAVVALVTSFVMAASEVSPELKHWLREKGWVSITLH-VVNLGATTLLLFAS 148
Query: 469 CLATAITEMVRNVK 482
+A ++ E ++ K
Sbjct: 149 KIAGSLREEIKRTK 162
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 32.6 bits (75), Expect = 0.75
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G P L L ++ P R +L++ GV G LA+ G++ + A+W ++FY+ G
Sbjct: 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI-GVLAAGDAAWRHIFYVGG 176
Query: 70 AIAVL 74
+L
Sbjct: 177 VGPLL 181
>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter. The Folate-Biopterin
Transporter (FBT) Family (TC 2.A.71)The only
functionally characterized members of the family are
from protozoa and include FT1, the major folate
transporter in Leishmania, and BT1, the Leishmania
biopterin/folate transporter. A related protein in
Trypanosoma brucei, ESAGIO, shows weak folate/biopterin
transport activity [Cell envelope, Other].
Length = 468
Score = 32.8 bits (75), Expect = 0.87
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 11/114 (9%)
Query: 687 VLPGVGALAASYVGC-----NTSMVAICFTIGMAFMGFC---YASIRVNPIDLSPNFSGT 738
VL G+ A Y + + A + S+ I SP+ +
Sbjct: 99 VLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPS 158
Query: 739 IMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLFG 792
+++ G G+++ L G L R++F I L + L
Sbjct: 159 LVSWMWGASATGGLISSLLGGPLLDKT---LTRILFLITAALLLLQLFVSNLSK 209
>gnl|CDD|236534 PRK09476, napG, quinol dehydrogenase periplasmic component;
Provisional.
Length = 254
Score = 31.9 bits (73), Expect = 1.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 22/59 (37%)
Query: 458 MGVTLALMMRSCLA-----------------TAIT-EMVRNVKTTKHDF----VNTESC 494
MG+ + + +CL AIT E+ RN +T KH F V++++C
Sbjct: 128 MGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDAC 186
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 31.9 bits (73), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 524 GVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLL 567
+I AF+ GY + +P G+L +K G K + LG L A+ L
Sbjct: 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAAL 94
>gnl|CDD|183041 PRK11212, PRK11212, hypothetical protein; Provisional.
Length = 210
Score = 31.1 bits (71), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 413 RVVFWIMFLALVISNVFFVLFGSGEVQYWN 442
R++F +M AL+IS V VLF G Q +
Sbjct: 70 RIIFAVMLPALLISYVISVLFYQGSWQGFA 99
>gnl|CDD|216827 pfam01983, CofC, Guanylyl transferase CofC like. Coenzyme F420 is
a hydride carrier cofactor that functions during
methanogenesis. This family of proteins represents CofC,
a nucleotidyl transferase that is involved in coenzyme
F420 biosynthesis. CofC has been shown to catalyze the
formation of lactyl-2-diphospho-5'-guanosine from
2-phospho-L-lactate and GTP.
Length = 217
Score = 30.6 bits (69), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 84 FNDPKSH--PYISEKERK-----YLLDSIGAAERRKDAKFDWDE 120
N PK+ +SE+ERK LLD I A + F DE
Sbjct: 10 NNHPKTRLSSILSEEERKELLRLMLLDVIDALKPVDVLVFSEDE 53
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 31.1 bits (71), Expect = 2.7
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 524 GVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLR 583
GV+L +F +GY+ S +FG K L L L TA+ +LT + + V V R
Sbjct: 139 GVLLGSFVFGYL---------SDRFGRKKVLLLSTLVTAVSGVLT-AFSPNYTV-FLVFR 187
Query: 584 FLEGVG 589
L G+G
Sbjct: 188 LLVGMG 193
>gnl|CDD|188300 TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate
dehydratase converts D-galactarate to
5-dehydro-4-deoxyglucarate which is subsequently acted
on by GarL, tartronate semialdehyde reductase and
glycerate kinase (, GenProp0714).
Length = 507
Score = 30.5 bits (69), Expect = 4.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 333 PNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGC 390
PN + AL++ GC + AP + I ++ I L+PNF G M + GLGC
Sbjct: 152 PNVDDVV-ALTHSYGCGVAINAPDAI----VPIRTLRNIALNPNFGGEAMVV--GLGC 202
>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 408
Score = 29.8 bits (67), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 524 GVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAI 563
++ SAFY GY + IP I +K K + LG A+
Sbjct: 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL 80
>gnl|CDD|217448 pfam03241, HpaB, 4-hydroxyphenylacetate 3-hydroxylase C terminal.
HpaB encodes part of the 4-hydroxyphenylacetate
3-hydroxylase from Escherichia coli. HpaB is part of a
heterodimeric enzyme that also requires HpaC. The enzyme
is NADH-dependent and uses FAD as the redox chromophore.
This family also includes PvcC, which may play a role in
one of the proposed hydroxylation steps of pyoverdine
chromophore biosynthesis.
Length = 205
Score = 29.1 bits (66), Expect = 7.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 84 FNDPKSHPYISEKERKYL--LDSIGAAERRKDAKFDWDERTQGVILSSFYYGYTL 136
F +P+ PY+ KYL + + A ER K + WD + S F + L
Sbjct: 125 FANPEIRPYL----EKYLRGSNGVSAEERVKLFRLAWD-----LTGSEFGGRHLL 170
>gnl|CDD|217640 pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID
component.
Length = 264
Score = 29.0 bits (66), Expect = 9.0
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 24/99 (24%)
Query: 234 IGLSVAENG-VLSALPFLIMWLV--------------SMSSSALADFFIARDILSRTNVR 278
IG S+A G +L + FL+++ + + + + ++ +L + +
Sbjct: 122 IGASLALQGNILGPILFLLLFNIIHLALRYYGLFLGYKLGTKLIEK--LSGGLLKK--LT 177
Query: 279 KVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFM 317
+ + LG + VGAL AS+V T + F+ G +
Sbjct: 178 EGASILGLFV--VGALIASWVKVTTPLK---FSAGDVTV 211
>gnl|CDD|238868 cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the
putative arylesterase/acylhydrolase from the rumen
anaerobe Prevotella bryantii XynE. The P. bryantii XynE
gene is located in a xylanase gene cluster. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 204
Score = 28.7 bits (65), Expect = 9.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 256 SMSSSALADFFIARDILSRTNVRKVFATLGA 286
+ SALA F RD+LS+ VR V G
Sbjct: 56 GLGPSALARF--DRDVLSQPGVRTVIILEGV 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,043,512
Number of extensions: 4286837
Number of successful extensions: 7267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7132
Number of HSP's successfully gapped: 308
Length of query: 817
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 712
Effective length of database: 6,280,432
Effective search space: 4471667584
Effective search space used: 4471667584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.0 bits)