RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11734
(817 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 68.5 bits (168), Expect = 3e-12
Identities = 33/207 (15%), Positives = 73/207 (35%), Gaps = 11/207 (5%)
Query: 593 ETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIM 652
+ +L + +W + I+ V Y I P Y+ +V ++ ++ L
Sbjct: 242 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301
Query: 653 WLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTI 712
++ ++D + + T V + A + A + + IC +
Sbjct: 302 IPGTLLCGWMSDKVFRGNR-GATGVFFMTLVTIATIVYWMNPAGNPT-----VDMICMIV 355
Query: 713 GMAFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMV-APLTVGFLTQNKTLLEW 770
+ I ++ ++L+P +GT + G + G V A VG+ W
Sbjct: 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGW 412
Query: 771 RVVFWIMFLTLFISNVFFVLFGSGEVQ 797
F +M ++ + ++ GE +
Sbjct: 413 DGGFMVMIGGSILAVILLIVVMIGEKR 439
Score = 67.4 bits (165), Expect = 7e-12
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 8/135 (5%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYIFG 69
G +P + W ER + ++ +G + L M++ W Y+
Sbjct: 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193
Query: 70 AIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQ------ 123
A+L F + + P+S +E K + ++
Sbjct: 194 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 253
Query: 124 --GVILSSFYYGYTL 136
+ +++ +
Sbjct: 254 LWYIAIANVFVYLLR 268
Score = 63.9 bits (156), Expect = 1e-10
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 8/172 (4%)
Query: 195 PWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWL 254
+L + +W + I+ V Y I P Y+ EV ++ ++ L
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303
Query: 255 VSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGM 314
++ ++D + T V + A + + G T + IG
Sbjct: 304 GTLLCGWMSDKVFRGNR-GATGVFFMTLVTIATI----VYWMNPAGNPTVDMICMIVIGF 358
Query: 315 AFMGFCYASIRVNPIDLSP-NFSGTIMALSNGLGCVSGMV-APLTVGFLTQN 364
G I ++ ++L+P +GT + G + G V A VG+
Sbjct: 359 LIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409
Score = 57.4 bits (139), Expect = 1e-08
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 514 AKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLI-- 571
+ + G LS Y + G +S + + L G + A L +
Sbjct: 55 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114
Query: 572 AHSGPVSMTVLRFLEGVGE 590
A S M VL FL G +
Sbjct: 115 ATSSIAVMFVLLFLCGWFQ 133
Score = 55.8 bits (135), Expect = 3e-08
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 114 AKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLV-- 171
+ + G LS Y + G +S + + L G + A + L V
Sbjct: 55 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114
Query: 172 AHSGPVSMTVLRFLEGVGE 190
A S M VL FL G +
Sbjct: 115 ATSSIAVMFVLLFLCGWFQ 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 4e-12
Identities = 69/423 (16%), Positives = 130/423 (30%), Gaps = 136/423 (32%)
Query: 446 LPARYVLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVV 505
L ++ L + + + + + + +F E+C+ N H +
Sbjct: 60 LVGKF-----------LGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALA 105
Query: 506 SKTYTTLDAKFDWDERTQGVILSAFYYGYILTHIPGG-----ILSQK-----------FG 549
+ L + D ++ + I+ P L + FG
Sbjct: 106 A----KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 550 GK-----------------HTLGLGFLSTAIFTLLTPLIAHSG------PVSMTVLRFLE 586
G+ H L +G L L+ LI + + +L +LE
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 587 GVGEDLETPWAAILSSLPV-WSLI-ISEVGHDYGFYLISSDL----PKYMSQVI-GLSVA 639
TP L S+P+ LI + ++ H Y++++ L P + + G +
Sbjct: 221 NPS---NTPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 640 ENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATL---GA----VLPGVG 692
G+++A+ ++ + S + +VRK L G P
Sbjct: 274 SQGLVTAV------AIAETDSW-ESFF--------VSVRKAITVLFFIGVRCYEAYPNT- 317
Query: 693 ALAASYV--------GCNTSMVAICFTIGMAFMGFCYASI-----RVNPIDLSPNFSGTI 739
+L S + G + M++I + + N L I
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSIS--------NLTQEQVQDYVNKTNS-HLPAGKQVEI 368
Query: 740 MALSNGLGC--VSGMVAPLTVGF------------LTQNKTLLEWR-VVFWIMFLTLFIS 784
+L NG VSG L G L Q++ R + F FL ++
Sbjct: 369 -SLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VA 424
Query: 785 NVF 787
+ F
Sbjct: 425 SPF 427
Score = 62.4 bits (151), Expect = 6e-10
Identities = 111/675 (16%), Positives = 175/675 (25%), Gaps = 307/675 (45%)
Query: 18 TLLAQWSPPNE----------RSFMTALVFAGVQLGSVLATFCSGLIMSFTASWANVFYI 67
L A+ N+ ++++TA + A S L + A + I
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAI 159
Query: 68 FGAIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVI- 126
FG G QG
Sbjct: 160 FG------------------------------------G----------------QGNTD 167
Query: 127 -----LSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSG------ 175
L Y Y H L + + L+ L+ +
Sbjct: 168 DYFEELRDLYQTY-----------------HVLVGDLIKFS-AETLSELIRTTLDAEKVF 209
Query: 176 PVSMTVLRFLEGVGEDLKTPWAAILYSLPV-WSLI-ISEVGHDYGLYLISTDL-PKYMSE 232
+ +L +LE TP L S+P+ LI + ++ H Y + P +
Sbjct: 210 TQGLNILEWLENPS---NTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLLGFTPGELRS 265
Query: 233 VI-GLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGV 291
+ G + G+++A+ ++ + S FF +VRK
Sbjct: 266 YLKGATGHSQGLVTAV------AIAETDSW-ESFF--------VSVRK------------ 298
Query: 292 GALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVNP-IDLSPNFSGTIM--ALSNGLGC 348
+ + F IG P L P +I+ +L N G
Sbjct: 299 -------------AITVLFFIG-------VRCYEAYPNTSLPP----SILEDSLENNEGV 334
Query: 349 VSGM--VAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGC--VSGMVAPLTVGF-- 402
S M ++ LT + + N L I +L NG VSG L G
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEI-SLVNGAKNLVVSGPPQSL-YGLNL 391
Query: 403 ----------LTQNKT-LSEWRVVFWIMFLALVISNVFFVLFGSGEVQYWNESILPARYV 451
L Q++ SE ++ F F L +++ F S L
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFH-------------SHL----- 431
Query: 452 LGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYTT 511
L A ++++ D V F + V Y T
Sbjct: 432 ------------------LVPA-SDLI------NKDLVKNNVSFNAKDIQIPV----YDT 462
Query: 512 LDAK---------------------FDWDERTQGVILSAFYYGYILTHI----PGGILSQ 546
D W+ TQ A THI PGG
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ---FKA-------THILDFGPGG---- 508
Query: 547 KFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTVLRFLEGVGEDLETPWAAILSSLPVW 606
GLG L R +G G + I++
Sbjct: 509 ------ASGLGVL---------------------THRNKDGTGVRV------IVAG---- 531
Query: 607 SLIISEVGH--DYGF 619
+L ++ DYGF
Sbjct: 532 TL---DINPDDDYGF 543
Score = 60.4 bits (146), Expect = 2e-09
Identities = 106/655 (16%), Positives = 191/655 (29%), Gaps = 239/655 (36%)
Query: 135 TLTHIPGGILSQKFGGKHTL----GLGFLSTAL-----LTLLTP---LVAHSGPVSMTVL 182
TL+H G + +H L F+++ L L P A P + L
Sbjct: 10 TLSH--GSL-------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 183 --RFLEGVGEDLKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAE 240
+FL V L P + V +L ++E + Y L D+
Sbjct: 61 VGKFLGYV-SSLVEPSKVGQFD-QVLNLCLTEFENCY---LEGNDI-------------- 101
Query: 241 NGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVG 300
+ + + L + + + ++ AR + R +K + L A G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL---------FRAVGEG 152
Query: 301 CNTSMVAIF----------------FTIGMAFMG-FCYASIRV------NPIDLSPNFSG 337
N +VAIF + +G S +D F+
Sbjct: 153 -NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 338 T--IMA-LSNG---------LGC-VSGMVAPLTVGFLTQ--------NIISINPIDLSPN 376
I+ L N L +S PL + Q ++ P +L
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISC---PLI--GVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 377 FSGTIMALSNGLGCVSGMVAPLTVG-------FLTQ-NKTLSEWRVVFWIMFLALVISNV 428
G G G+V + + F K + V+F+I
Sbjct: 267 LKGA-------TGHSQGLVTAVAIAETDSWESFFVSVRKAI---TVLFFI---------- 306
Query: 429 FFVLFGSGEVQYWNESILPARYVL-------GIMGCMGVTLAL--MMRSCLATAITEMVR 479
G + + + LP + G+ M L++ + + + + +
Sbjct: 307 -----GVRCYEAYPNTSLPPSILEDSLENNEGVPSPM---LSISNLTQEQVQDYVNKTNS 358
Query: 480 NVKTTKHDFVNTESCFPNANG-NHTVVSKTYTTLDAKFDWDERTQGVILSAFYYGYILT- 537
++ K ++ NG + VVS +L YG LT
Sbjct: 359 HLPAGKQVEIS------LVNGAKNLVVSGPPQSL-------------------YGLNLTL 393
Query: 538 ---HIPGGI------LSQKFGGKHTLGLGFLS-TAIFTLLTPLIAHS---GPVSMTVLRF 584
P G+ S++ K FL + F HS P S
Sbjct: 394 RKAKAPSGLDQSRIPFSER---KLKFSNRFLPVASPF--------HSHLLVPAS------ 436
Query: 585 LEGVGEDLETPWAAILSS---LPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAEN 641
+ + +DL + + +PV+ + G D +V+ S++E
Sbjct: 437 -DLINKDLVKNNVSFNAKDIQIPVYD---TFDGSDL--------------RVLSGSISER 478
Query: 642 GV--LSALPFLIMW--LVSMSSSALADY---------LIVRDILSRTNVRKVFAT 683
V + LP + W ++ + D+ ++ T VR + A
Sbjct: 479 IVDCIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 47.7 bits (113), Expect = 2e-05
Identities = 49/292 (16%), Positives = 85/292 (29%), Gaps = 97/292 (33%)
Query: 466 MRSCLATAITEMVRN--VKTTKHDFVNTESCFPNANGNHTVVSKTYTTL--DAKFDWDER 521
+ +I ++V N V T H F G + + Y+ + + D +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIH--------FGGEKGKR--IRENYSAMIFETIVDGKLK 1702
Query: 522 TQGVILSAFYY--GYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSM 579
T+ + + Y G+LS T F A+ +
Sbjct: 1703 TEKIFKEINEHSTSYTFRS-EKGLLSA------T---QFTQPALTL-----------MEK 1741
Query: 580 TVLRFL--EGVGEDLETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLS 637
L +G+ P A + GH G Y + L
Sbjct: 1742 AAFEDLKSKGL-----IPADATFA------------GHSLGEY---AAL----------- 1770
Query: 638 VAENGVLS---ALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGAL 694
+ V+S + +V + + RD L R+N + A+ P G +
Sbjct: 1771 ASLADVMSIESLVE-----VVFYRGMTMQV-AVPRDELGRSNYG-----MIAINP--GRV 1817
Query: 695 AASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNF----SGTIMAL 742
AAS ++ + +G I VN N +G + AL
Sbjct: 1818 AAS--FSQEALQYVVERVGKRTGWLV--EI-VN--YNVENQQYVAAGDLRAL 1862
Score = 40.8 bits (95), Expect = 0.002
Identities = 40/295 (13%), Positives = 74/295 (25%), Gaps = 94/295 (31%)
Query: 255 VSMSSSALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFT--- 311
M A+D+ +R + T G + + V N + I F
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRAD-NHFKDTYGFSILDI-------VINNPVNLTIHFGGEK 1680
Query: 312 ---IGMAFMGFCY-----ASIRVNPI--DLSPNFSGTIMALSNGLGCVSGMVAPLTVGFL 361
I + + ++ I +++ + + GL L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---------L---SA 1728
Query: 362 TQNIISINPIDLSPNFSGT---IMALSNGLGCVSGMVAPLTV----GFLTQNKT-----L 409
TQ T + + A G + + T L
Sbjct: 1729 TQF---------------TQPALTLME---------KAAFEDLKSKGLIPADATFAGHSL 1764
Query: 410 SEWRVVFWIMFLALV-ISNVFF------VLFGSGEVQYWNESILPARYVLGIMGCMGVTL 462
E + AL +++V V+F G ++ G + +
Sbjct: 1765 GE--------YAALASLADVMSIESLVEVVFYRG--MTMQVAVPRDELGRSNYGMIAINP 1814
Query: 463 ALMMRSCLATAITEMVRNVKTTKHDF---VNTESCFPNANGNHTVVSKTYTTLDA 514
+ S A+ +V V VN + N V + LD
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVN----Y-NVENQQYVAAGDLRALDT 1864
Score = 31.9 bits (72), Expect = 1.1
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 55/190 (28%)
Query: 228 KYMSEVIGLS----VAENGVLSALPF-------LIMWLVSMSSSALADFFIARDILSRTN 276
+ + G S V N V + F + +M + D +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD--------GKLK 1702
Query: 277 VRKVFATLGAVLPGV------GALAASYVGCNTSMVAIFFTIGMAFMGFCYASIRVN-PI 329
K+F + G L+A+ T A+ + A + ++ I
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQ---FTQ-PAL-TLMEKA----AFEDLKSKGLI 1753
Query: 330 DLSPNFSGTIMALSNG----LGCVSGMVAPL--TV------GFLTQNIISINPIDLSPNF 377
F+G S G L ++ V + V G Q + P D
Sbjct: 1754 PADATFAG----HSLGEYAALASLAD-VMSIESLVEVVFYRGMTMQVAV---PRDELGRS 1805
Query: 378 SGTIMALSNG 387
+ ++A++ G
Sbjct: 1806 NYGMIAINPG 1815
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-04
Identities = 90/601 (14%), Positives = 152/601 (25%), Gaps = 181/601 (30%)
Query: 125 VILSSFYYGYTLTHI---PGGILSQK-FGGKHTLGLGFLSTALLTLLTPLVAHSGPVSMT 180
V +F + + P ILS++ H + + L L L++
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQ---EEM 78
Query: 181 VLRFLEGVGED----LKTPWAAILYSLPVWSLIISEVGHDYGLYLISTDLPKY------- 229
V +F+E V L +P P + D LY + KY
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQP 136
Query: 230 ---------------------M-----SEVIGLSVAENGVLSALPFLIMWL--------- 254
+ + V V + F I WL
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 255 ------------VSMSSSALADFFI--------ARDILSRTNVRKVFAT--LGAVLPGVG 292
+ + ++ +D + L R K + L VL V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNV- 253
Query: 293 ALAASYVGCNTSMVAIFFTIGMAFMGFC-------YASIRVNPIDLSPNFSGTIMALSNG 345
N AF C + + D + T ++L +
Sbjct: 254 --------QNAKAWN-------AFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHH 294
Query: 346 LGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSGTI-MALSNGLGCVSGMVAPLTVGFLT 404
+ L + P DL T LS ++A L
Sbjct: 295 S---MTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLS--------IIAESIRDGLA 342
Query: 405 QNKTLSEWRVVFWIMFLALVISNVFFVLFGSGEVQ--YWNESILPA-----RYVLGIM-- 455
T W+ V L +I + VL E + + S+ P +L ++
Sbjct: 343 ---TWDNWKHVN-CDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 456 -----GCMGVTLALMMRSCLATAITEMVRNVKTTK---HD--FVNTESCFPNANGNHTVV 505
M V L S + + K + N H +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVE-------KQPKESTISIPSIYLELKVKL-ENEYALHRSI 449
Query: 506 SKTYTTLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGG--KHTLGLGFLSTAI 563
Y FD D+ L ++Y +I H+ ++ L FL I
Sbjct: 450 VDHYNIPK-TFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 564 FTLLTPLIAHSGPVSM-----------------------TVLRFLEGVGEDL-ETPWAAI 599
T A ++ +L FL + E+L + + +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 600 L 600
L
Sbjct: 568 L 568
Score = 40.6 bits (94), Expect = 0.003
Identities = 32/228 (14%), Positives = 59/228 (25%), Gaps = 66/228 (28%)
Query: 3 EMSNFPKGTTFPA--LCTLLAQWSPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFTAS 60
+S FP P L + W + M V+ S
Sbjct: 377 RLSVFPPSAHIPTILLSLI---WFDVIKSDVM-----------VVVNKLHK---YSLVEK 419
Query: 61 WANVFYIFGAIAVLWFAFWCILCFNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDE 120
I I ++ + N+ H + ++D FD D+
Sbjct: 420 QPKESTIS--IPSIYLEL-KVKLENEYALH--------RSIVDH-----YNIPKTFDSDD 463
Query: 121 RTQGVILSSFY-Y-GYTLTHIPGGILSQKFGG--KHTLGLGFLSTALLTLLTPLVAHSGP 176
+ FY + G+ H+ ++ L FL + T A
Sbjct: 464 LIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 177 VSM-----------------------TVLRFLEGVGEDL-KTPWAAIL 200
++ +L FL + E+L + + +L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 33.8 bits (77), Expect = 0.25
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 516 FDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLL 567
F G+I SAFY+GY + IP GIL +K K + G A+ L
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107
Score = 31.8 bits (72), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 116 FDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLL 167
F G+I S+FY+GY + IP GIL +K K + G AL L
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 31.1 bits (70), Expect = 1.7
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 18/171 (10%)
Query: 626 LPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLG 685
P ++ + +S ++ G++ A L L L+D + +RK +
Sbjct: 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD---------KLGLRKYLLWII 80
Query: 686 AVLPGVGALAASYVGCNT--SMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTI---M 740
+ + A ++ + + +G ++GFC+ + S
Sbjct: 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEF 140
Query: 741 ALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLF 791
+ GCV + VG + + + VFW+ I V
Sbjct: 141 GRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFA 187
Score = 30.3 bits (68), Expect = 3.2
Identities = 31/273 (11%), Positives = 71/273 (26%), Gaps = 24/273 (8%)
Query: 522 TQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSGPVSMTV 581
G L A G + T + G L + + +A++ + +
Sbjct: 148 CVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA 207
Query: 582 LRFLEGVGEDLETP--WAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVA 639
E P W L + V F+ + ++V G
Sbjct: 208 FSLKL-ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266
Query: 640 ENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYV 699
G L + I++R + L + V + +S+
Sbjct: 267 M-GELLNASIM---------------FFAPLIINRIGGKNAL-LLAGTIMSVRIIGSSFA 309
Query: 700 GCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLG-CVSGMVAPLTV 758
+V + + FS TI + ++ + +
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Query: 759 GFLTQNKTLLEWRVVFWIMFLTLFISNVFFVLF 791
G + ++ + ++ + ++ L + V
Sbjct: 370 GNMYES---IGFQGAYLVLGLVALGFTLISVFT 399
Score = 29.9 bits (67), Expect = 3.3
Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 21/213 (9%)
Query: 226 LPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSSSALADFFIARDILSRTNVRKVFATLG 285
P ++ ++ +S ++ G++ A L L L+D + +RK +
Sbjct: 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD---------KLGLRKYLLWII 80
Query: 286 AVLPGVGALAASYVGCNTSMVAIFF--TIGMAFMGFCYASIRVNPIDLSPNFSGTI---M 340
+ + A ++ I +G ++GFC+ + S
Sbjct: 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEF 140
Query: 341 ALSNGLGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSGTIMALSNGLGCVSGMVAPLTV 400
+ GCV + VG + +IN + SG + L +
Sbjct: 141 GRARMFGCVGWALGASIVGIM----FTINNQFVFWLGSGCALIL---AVLLFFAKTDAPS 193
Query: 401 GFLTQNKTLSEWRVVFWIMFLALVISNVFFVLF 433
N + + L L + L
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLS 226
>3m1c_A GH, envelope glycoprotein H; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 762
Score = 29.9 bits (66), Expect = 4.2
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 265 FFIARDILSRTNVRKVFAT-LGAVLP-GVGALAASYVGCNTSMVAIFFTIGMAFMGFCYA 322
++A L RT R V+ + + P GV GC+ ++V G FMG +
Sbjct: 173 TWLAARGLLRTPGRYVYLSPSASTWPVGVWTTGGLAFGCDAALVRA--RYGKGFMGLVIS 230
Query: 323 SIRVNPIDL 331
P ++
Sbjct: 231 MRDSPPAEI 239
Score = 29.2 bits (64), Expect = 7.6
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 672 LSRTNVRKVFAT-LGAVLP-GVGALAASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPI 729
L RT R V+ + + P GV GC+ ++V G FMG + P
Sbjct: 180 LLRTPGRYVYLSPSASTWPVGVWTTGGLAFGCDAALVRA--RYGKGFMGLVISMRDSPPA 237
Query: 730 DL 731
++
Sbjct: 238 EI 239
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 28.9 bits (65), Expect = 6.8
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 416 FWIMFLALVISNVFFVLFGSGEVQYWNESILPARYVLGIMGCMGVTLA 463
FW +A ++ + F+ G ++ I + + + V+LA
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLA 57
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex,
envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Length = 572
Score = 29.1 bits (64), Expect = 7.9
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 258 SSSALADFFIARDILSRTNVRKVFATLGAVLP-GVGALAASYVGCNTSMVAIFFTIGMAF 316
S + L F + T AV P V LA + C ++ + T+G AF
Sbjct: 16 SGAELVAFDAPG--------VRRTYTTAAVWPAEVAVLADAEARCPAAVFNV--TLGEAF 65
Query: 317 MGFCYASIRVNPIDL 331
+G A P+++
Sbjct: 66 LGLRVALRSFLPLEV 80
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 426 SNVFFVLFGSGEVQYWNESILPARYVLGIMGCMGVTLA 463
+++ L G G+ + + L L + L+
Sbjct: 155 AHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLS 192
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 28.8 bits (65), Expect = 9.2
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 24 SPPNERSFMTALVFAGVQLGSVLATFCSGLIMSFT--ASWANVFYIFGAIAVLWFAFWCI 81
+P + + + V +G++ + + S T A + +FA + I
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493
Query: 82 LCF 84
L
Sbjct: 494 LAA 496
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 28.8 bits (65), Expect = 9.8
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 25/87 (28%)
Query: 84 FNDPKSHPYISEKERKYLLDSIGAAERRKDAKFDWDERTQGVILSSF------YYG---- 133
+ + P +++++ YLLD I + D I +S+ G
Sbjct: 317 YQGDFTDPKVTQEDVDYLLDVINHRYPEANITLA-D------IEASWAGLRPLLIGNSGS 369
Query: 134 -------YTLTHIPGGILSQKFGGKHT 153
+L P G+L+ GGK T
Sbjct: 370 PSTISRGSSLEREPDGLLTL-SGGKIT 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,431,314
Number of extensions: 763471
Number of successful extensions: 1796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 72
Length of query: 817
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 716
Effective length of database: 3,881,772
Effective search space: 2779348752
Effective search space used: 2779348752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.4 bits)