RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11734
(817 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/283 (12%), Positives = 72/283 (25%), Gaps = 13/283 (4%)
Query: 514 AKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLI-- 571
+ + G LS Y + G +S + + L G + A L +
Sbjct: 52 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 111
Query: 572 AHSGPVSMTVLRFLEGVGEDL-ETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLP--- 627
A S M VL FL G + + P + V + + +P
Sbjct: 112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 171
Query: 628 -------KYMSQVIGLSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKV 680
A +L AL M + S L ++ K
Sbjct: 172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 231
Query: 681 FATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIM 740
L A + + + + ++ + + + + + + S
Sbjct: 232 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291
Query: 741 ALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFLTLFI 783
L G ++ + + ++ + +
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 334
Score = 37.4 bits (85), Expect = 0.007
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 114 AKFDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLV-- 171
+ + G LS Y + G +S + + L G + A + L V
Sbjct: 52 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 111
Query: 172 AHSGPVSMTVLRFLEGVGEDLKTPWAAILYS 202
A S M VL FL G + + P
Sbjct: 112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 33.6 bits (75), Expect = 0.099
Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 7/192 (3%)
Query: 600 LSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIGLSVAENGVLSALPFLIMWLVSMSS 659
L + W + + + P ++ + +S ++ G++ A L L
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63
Query: 660 SALADYLIVRDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAICFTIGMAFMGF 719
L+D L +R L ++ G ++ + + + +G ++GF
Sbjct: 64 GLLSDKLGLRKYL-------LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116
Query: 720 CYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNKTLLEWRVVFWIMFL 779
C+ + S + L + T+ V +
Sbjct: 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176
Query: 780 TLFISNVFFVLF 791
L ++ + F
Sbjct: 177 ALILAVLLFFAK 188
Score = 32.1 bits (71), Expect = 0.29
Identities = 30/270 (11%), Positives = 67/270 (24%)
Query: 200 LYSLPVWSLIISEVGHDYGLYLISTDLPKYMSEVIGLSVAENGVLSALPFLIMWLVSMSS 259
L + W + + + + P ++ ++ +S ++ G++ A L L
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63
Query: 260 SALADFFIARDILSRTNVRKVFATLGAVLPGVGALAASYVGCNTSMVAIFFTIGMAFMGF 319
L+D R L + + G L + + + I+
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 320 CYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAPLTVGFLTQNIISINPIDLSPNFSG 379
+ S G + + + Q + +
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183
Query: 380 TIMALSNGLGCVSGMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLFGSGEVQ 439
A ++ + A K E + FL+L + V +
Sbjct: 184 LFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243
Query: 440 YWNESILPARYVLGIMGCMGVTLALMMRSC 469
+ A G VT + +
Sbjct: 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNA 273
Score = 30.1 bits (66), Expect = 1.3
Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 10 GTTFPALCTLLAQWSPPNERSFMTALVFA-GVQLGSVLATFCSGLIMSFTASWANVFYIF 68
+ + + + F QL + + +G + + + +
Sbjct: 327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVL 385
Query: 69 GAIAVLWFAFWCIL 82
G +A+ +
Sbjct: 386 GLVALGFTLISVFT 399
Score = 29.4 bits (64), Expect = 1.8
Identities = 28/273 (10%), Positives = 68/273 (24%), Gaps = 4/273 (1%)
Query: 516 FDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLTPLIAHSG 575
+ G+I +A +L G+LS K G + L + +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 576 PVSMTVLRFLEGVGEDLETPWAAILSSLPVWSLIISEVGHDYGFYLISSDLPKYMSQVIG 635
+ +L G L + A ++ + +S +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF----GCVGWAL 153
Query: 636 LSVAENGVLSALPFLIMWLVSMSSSALADYLIVRDILSRTNVRKVFATLGAVLPGVGALA 695
+ + + + WL S + LA L + ++ A LA
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA 213
Query: 696 ASYVGCNTSMVAICFTIGMAFMGFCYASIRVNPIDLSPNFSGTIMALSNGLGCVSGMVAP 755
+ IG++ + N + + + ++
Sbjct: 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA 273
Query: 756 LTVGFLTQNKTLLEWRVVFWIMFLTLFISNVFF 788
+ F + + + + + +
Sbjct: 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306
Score = 27.4 bits (59), Expect = 7.3
Identities = 13/91 (14%), Positives = 28/91 (30%)
Query: 116 FDWDERTQGVILSSFYYGYTLTHIPGGILSQKFGGKHTLGLGFLSTALLTLLTPLVAHSG 175
+ G+I ++ L G+LS K G + L ++ +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 176 PVSMTVLRFLEGVGEDLKTPWAAILYSLPVW 206
+ +L G L + A ++ +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 28.2 bits (63), Expect = 0.61
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 84 FNDPKSHPYISEKERKYLLDSIGAAERR 111
F +PY+ K + L+ + + +
Sbjct: 17 FAKNIENPYLDTKGLENLMKNTSLSRIQ 44
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 28.2 bits (63), Expect = 0.62
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 83 CFNDPKSHPYISEKERKYLLDSIGAAERR 111
HPY +E E+K + +
Sbjct: 20 WLFQHIGHPYPTEDEKKQIAAQTNLTLLQ 48
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120
[TaxId: 103690]}
Length = 226
Score = 26.9 bits (59), Expect = 7.9
Identities = 19/178 (10%), Positives = 45/178 (25%), Gaps = 18/178 (10%)
Query: 393 GMVAPLTVGFLTQNKTLSEWRVVFWIMFLALVISNVFFVLF--GSGEVQYWNESILPARY 450
GM + + + + + S + ++ G+V+ + ARY
Sbjct: 14 GMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARY 73
Query: 451 VLGIMGCMGVTLALMMRSCLATAITEMVRNVKTTKHDFVNTESCFPNANGNHTVVSKTYT 510
+ ++ + L+L + + VV +
Sbjct: 74 IDWMVTTPLLLLSLSWTAMQFIKK----------------DWTLIGFLMSTQIVVITSGL 117
Query: 511 TLDAKFDWDERTQGVILSAFYYGYILTHIPGGILSQKFGGKHTLGLGFLSTAIFTLLT 568
D R I + IL I + ++ L + + +
Sbjct: 118 IADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVL 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,974,827
Number of extensions: 136320
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 36
Length of query: 817
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 724
Effective length of database: 1,130,706
Effective search space: 818631144
Effective search space used: 818631144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.0 bits)