BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11737
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQZ5|NDUA6_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus
musculus GN=Ndufa6 PE=1 SV=1
Length = 131
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 75/116 (64%), Gaps = 8/116 (6%)
Query: 12 GTKVRPLLSTTKADARVRVLGLYKAWIRQAT----LIPIDYDVPKSEEQIKEKIRSEFLK 67
T V+P+ S +A+ RV LY+AW R+ L+ +D V +Q ++K+R F+K
Sbjct: 17 STSVKPIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLDITV----KQGRDKVREMFMK 72
Query: 68 HKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFISKFMSG 123
+ HVTD R++D+LVIKG+MEL+ET ++K + +M ++ ET P+P DF+SKF G
Sbjct: 73 NAHVTDPRVVDLLVIKGKMELQETIKVWKQRTHVMRFFHETETPRPKDFLSKFYMG 128
>sp|Q02366|NDUA6_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos
taurus GN=NDUFA6 PE=1 SV=2
Length = 128
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 1 MASQVVKSTIVG--TKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIK 58
MA+ ++ V T V+P+ S +A+ RV LY+AW R+ + + S +Q +
Sbjct: 1 MAASGLRQAAVAASTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGR 60
Query: 59 EKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFIS 118
+K+R F K+ H+TD R++D+LVIKG+MEL ET ++K + +M ++ ET P+P DF+S
Sbjct: 61 DKVREMFKKNAHITDPRVVDLLVIKGKMELEETIKVWKQRTHVMRFFHETEAPRPKDFLS 120
Query: 119 KFMSG 123
KF G
Sbjct: 121 KFYVG 125
>sp|Q0MQA3|NDUA6_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
OS=Pongo pygmaeus GN=NDUFA6 PE=2 SV=3
Length = 128
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 74/116 (63%)
Query: 8 STIVGTKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLK 67
++ T V+P+ S +A+ RV LY+AW R+ + + + + ++K+R F+K
Sbjct: 10 ASTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMK 69
Query: 68 HKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFISKFMSG 123
+ HVTD R++D+LVIKG++EL ET +++K + +M ++ ET P+P DF+SKF G
Sbjct: 70 NAHVTDPRVVDLLVIKGKIELEETINVWKQQTHVMRFFHETEAPRPKDFLSKFYVG 125
>sp|Q0MQA5|NDUA6_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pan
troglodytes GN=NDUFA6 PE=2 SV=3
Length = 128
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 1 MASQVVK--STIVGTKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIK 58
MA V+ ++ T V+P+ S +A+ RV LY+AW R+ + + + + +
Sbjct: 1 MAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLDITVKMGR 60
Query: 59 EKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFIS 118
+K+R F+K+ HVTD R++D+LVIKG++EL ET ++K + +M ++ ET P+P DF+S
Sbjct: 61 DKVREMFMKNAHVTDPRVVDLLVIKGKIELEETIKVWKQRTHVMRFFHETEAPRPKDFLS 120
Query: 119 KFMSG 123
KF G
Sbjct: 121 KFYVG 125
>sp|Q0MQA4|NDUA6_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
OS=Gorilla gorilla gorilla GN=NDUFA6 PE=2 SV=3
Length = 128
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 1 MASQVVK--STIVGTKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIK 58
MA V+ ++ T V+P+ S +A+ RV LY+AW R+ + + + + +
Sbjct: 1 MAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLDITVKMGR 60
Query: 59 EKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFIS 118
+K+R F+K+ HVTD R++D+LVIKG++EL ET ++K + +M ++ ET P+P DF+S
Sbjct: 61 DKVREMFMKNAHVTDPRVVDLLVIKGKIELEETIKVWKQRTHVMRFFHETEAPRPKDFLS 120
Query: 119 KFMSG 123
KF G
Sbjct: 121 KFYVG 125
>sp|P56556|NDUA6_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
OS=Homo sapiens GN=NDUFA6 PE=1 SV=3
Length = 154
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 1 MASQVVK--STIVGTKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIK 58
MA V+ ++ T V+P+ S +A+ RV LY+AW R+ + + + + +
Sbjct: 27 MAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLDITVKMGR 86
Query: 59 EKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFIS 118
+K+R F+K+ HVTD R++D+LVIKG++EL ET ++K + +M ++ ET P+P DF+S
Sbjct: 87 DKVREMFMKNAHVTDPRVVDLLVIKGKIELEETIKVWKQRTHVMRFFHETEAPRPKDFLS 146
Query: 119 KFMSG 123
KF G
Sbjct: 147 KFYVG 151
>sp|P42114|NDUA6_NEUCR NADH-ubiquinone oxidoreductase 14.8 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nuo-14.8 PE=1 SV=3
Length = 124
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 20 STTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDM 79
S +DA+ RV LY+ W+R + Y +P I+ +IR EF +++ V + ++D+
Sbjct: 15 SANWSDAKRRVFALYRRWLRSTPEMQSMYSLPLPISVIRTRIRQEFERNRFVNKLPVVDV 74
Query: 80 LVIKGQMELRETASLFKHKGQIMSYWKET----LEPKPTDFISKFMSG 123
L+ KG + +ET + ++ +MSY+ E + P+ FI F+ G
Sbjct: 75 LLTKGHADYQETMNFWRQTTHMMSYFNEESFRGAKRLPSSFIDGFLQG 122
>sp|Q54F42|NDUA6_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
OS=Dictyostelium discoideum GN=ndufa6 PE=3 SV=1
Length = 124
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 14 KVRP-LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVT 72
++RP L+S T+ AR R LY+ IR + Y++ + +++ + RS F++ + VT
Sbjct: 10 QMRPALVSLTQQQARRRCFKLYRNCIRSIPHLIQHYNLSYNMSEMRNRFRSNFVEFEEVT 69
Query: 73 DIRIIDMLVIKGQMELRETASLFKHKGQIMSYW 105
+ +D L G+ EL + SL K + +++Y+
Sbjct: 70 EKNQLDRLAFIGETELFDAMSLLKTRSHVVNYF 102
>sp|Q9LHI0|NDUA6_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1
Length = 133
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 17 PLLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPK--SEEQIKEKIRSEFLKHKHVTDI 74
P S +AR RV ++A R I Y++ + Q++ I ++ + H+TD
Sbjct: 13 PPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDP 72
Query: 75 RIIDMLVIKGQMELRETASLFKHKGQIMSYW--KETL-------EPKPTDFISKFMSGS 124
++ID+L+ KG EL + K + I+ + E L + TDF+ F + +
Sbjct: 73 KVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVGEGLVQNTGNKDQGKTDFLKNFYTSN 131
>sp|Q91V16|LYRM5_MOUSE LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=2 SV=1
Length = 86
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R VL LYK L+ + D PK + K ++++ FLK+K V D I L+ +G+
Sbjct: 6 RGEVLTLYK------NLLYLGRDYPKGADYFKRRLKNVFLKNKDVEDPEKIKELIARGEF 59
Query: 87 ELRETASLF---KHKGQIMSYWKET 108
++E +L+ K++ Y+ +T
Sbjct: 60 VMKELEALYFLRKYRAMKQRYYSDT 84
>sp|B5XCZ6|LYRM5_SALSA LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1
Length = 92
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 35 KAWIRQ--ATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETA 92
++ +RQ L+ + + PK + E+++ F+K+K VTD + I LV +G+ ++E
Sbjct: 6 RSEVRQLYKNLLFLGREYPKGADYFGERLKRAFMKNKDVTDPKEIKKLVDRGEFVIKELE 65
Query: 93 SLF---KHKGQIMSYWKETL 109
+L+ K++ Y++E L
Sbjct: 66 ALYYLRKYRAMKKRYYEEEL 85
>sp|B3DLF3|LYRM2_XENTR LYR motif-containing protein 2 OS=Xenopus tropicalis GN=lyrm2
PE=3 SV=1
Length = 87
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 11 VGTKVRPLLSTTKAD-ARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHK 69
+G+++ P T K R +VLGLY+ +R IP D + ++E R EF ++K
Sbjct: 1 MGSRLPPAALTLKQFLVRQQVLGLYRKILRSVRQIPDAAD----QRYMQEWAREEFRRNK 56
Query: 70 HVTDIRIIDMLVIKGQMELRE 90
T+ I M++ GQ +L+E
Sbjct: 57 GATEEIAIRMMITHGQRQLQE 77
>sp|B2GV91|LYRM2_RAT LYR motif-containing protein 2 OS=Rattus norvegicus GN=Lyrm2 PE=3
SV=1
Length = 88
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R +VL LY+ +R IP D D + +++ R EF ++K T+ I M++ +G M
Sbjct: 19 RQQVLLLYRKILRAIKQIPSDSD----RKYLQDWAREEFKRNKSATEEDTIRMMITQGNM 74
Query: 87 ELRE 90
+L+E
Sbjct: 75 QLKE 78
>sp|Q0VCR0|LYRM5_BOVIN LYR motif-containing protein 5 OS=Bos taurus GN=LYRM5 PE=3 SV=1
Length = 88
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 49 DVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLF---KHKGQIMSYW 105
D PK + K ++++ FLK+K V D I L+ +G+ ++E +L+ K++ Y+
Sbjct: 22 DYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIERGKFVMKELEALYFLRKYRAMKQRYY 81
Query: 106 KETLEPK 112
+T + K
Sbjct: 82 SDTNKTK 88
>sp|Q8R033|LYRM2_MOUSE LYR motif-containing protein 2 OS=Mus musculus GN=Lyrm2 PE=2 SV=1
Length = 88
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R +VL LY+ +R +P D D + +++ R EF ++K T+ I M++ +G M
Sbjct: 19 RQQVLLLYRKILRAIRQVPSDSD----RKYLQDWAREEFKRNKSATEEDTIRMMITQGNM 74
Query: 87 ELRE 90
+L+E
Sbjct: 75 QLKE 78
>sp|B5FXA0|LYRM5_TAEGU LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5
PE=3 SV=1
Length = 86
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R V+ LYK L+ + + PK + + ++++ FLK+K TD I L+ +G+
Sbjct: 6 RSEVIKLYK------NLLYLGREYPKGADYFRRRLKAAFLKNKDETDPEKIKQLIARGEF 59
Query: 87 ELRETASLF 95
++E +L+
Sbjct: 60 VIKELEALY 68
>sp|Q503U1|LYM5A_DANRE LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3
SV=1
Length = 85
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R V+ LYK L+ + + PK +E++++ F+K+K VTD I L+ +G
Sbjct: 6 RGEVIRLYK------NLLYLGREYPKGTAYFRERLKTAFMKNKDVTDPEKIQKLIDRGDF 59
Query: 87 ELRETASLF 95
++E +L+
Sbjct: 60 VIKELEALY 68
>sp|Q9NU23|LYRM2_HUMAN LYR motif-containing protein 2 OS=Homo sapiens GN=LYRM2 PE=1 SV=1
Length = 88
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R +VL LY+ ++ +P D D + +K+ R EF ++K T+ I M++ +G M
Sbjct: 19 RQQVLLLYRRILQTIRQVPNDSD----RKYLKDWAREEFRRNKSATEEDTIRMMITQGNM 74
Query: 87 ELRE 90
+L+E
Sbjct: 75 QLKE 78
>sp|Q6IPR1|LYRM5_HUMAN LYR motif-containing protein 5 OS=Homo sapiens GN=LYRM5 PE=2 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 49 DVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLF---KHKGQIMSYW 105
D PK + K+++++ FLK+K V + I L+ +G+ ++E +L+ K++ Y+
Sbjct: 22 DYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQRYY 81
Query: 106 KET 108
+T
Sbjct: 82 SDT 84
>sp|Q5RES3|LYRM2_PONAB LYR motif-containing protein 2 OS=Pongo abelii GN=LYRM2 PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R +VL LY+ ++ +P D D + +K+ R EF ++K T+ I M++ +G M
Sbjct: 19 RQQVLLLYRRILQTIRQVPNDSD----RKYLKDWAREEFKRNKSATEEDTIRMMITQGNM 74
Query: 87 ELRE 90
+L+E
Sbjct: 75 QLKE 78
>sp|Q32LM5|LYRM2_BOVIN LYR motif-containing protein 2 OS=Bos taurus GN=LYRM2 PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R +VL LY+ ++ +P D D + +K+ R EF ++K T+ I M++ +G M
Sbjct: 19 RQQVLLLYRRILQAIRQVPNDSD----RKYLKDWAREEFKRNKSATEEDTIRMMITQGNM 74
Query: 87 ELRE 90
+L+E
Sbjct: 75 QLKE 78
>sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3
SV=1
Length = 84
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86
R V LYKA L+ + + PK + +E++R+ F K+K + D I L+ +G+
Sbjct: 6 RAEVKQLYKA------LLFLGREYPKGADYFRERLRAAFAKNKDMRDPDKIKQLISRGEF 59
Query: 87 ELRETASLF 95
++E +L+
Sbjct: 60 VVKELEALY 68
>sp|Q9H061|T126A_HUMAN Transmembrane protein 126A OS=Homo sapiens GN=TMEM126A PE=1 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 82 IKGQMELRETASLFKHKGQIMSYWKETLEP 111
+ G + R ++L HKG I+SYW T +P
Sbjct: 125 VNGGLAARYQSALLPHKGNILSYWIRTSKP 154
>sp|Q5RAY9|T126A_PONAB Transmembrane protein 126A OS=Pongo abelii GN=TMEM126A PE=2 SV=1
Length = 196
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 82 IKGQMELRETASLFKHKGQIMSYWKETLEP 111
+ G + R ++L HKG I+SYW T +P
Sbjct: 126 VNGGLAARYQSALLPHKGNILSYWIRTSKP 155
>sp|Q5PQ90|LYRM2_XENLA LYR motif-containing protein 2 OS=Xenopus laevis GN=lyrm2 PE=3
SV=1
Length = 87
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 11 VGTKVRPLLSTTKAD-ARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHK 69
+G+++ P T K R +VLGLY+ +R IP D + +++ R EF ++K
Sbjct: 1 MGSRLPPAALTLKQFLVRQQVLGLYRRIVRAVRQIPGAAD----RQYLQDWARDEFRRNK 56
Query: 70 HVTDIRIIDMLVIKGQMELRE 90
++ I M++ GQ +L+E
Sbjct: 57 GASEEIAIRMMISHGQRQLQE 77
>sp|B7NFT5|THIC_ECOLU Phosphomethylpyrimidine synthase OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=thiC PE=3 SV=1
Length = 631
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q8Z326|THIC_SALTI Phosphomethylpyrimidine synthase OS=Salmonella typhi GN=thiC PE=3
SV=1
Length = 631
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGKRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B5FQK9|THIC_SALDC Phosphomethylpyrimidine synthase OS=Salmonella dublin (strain
CT_02021853) GN=thiC PE=3 SV=1
Length = 631
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGKRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|A9N0K6|THIC_SALPB Phosphomethylpyrimidine synthase OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=thiC PE=3 SV=1
Length = 631
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGKRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B5BJR3|THIC_SALPK Phosphomethylpyrimidine synthase OS=Salmonella paratyphi A (strain
AKU_12601) GN=thiC PE=3 SV=1
Length = 631
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGHRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q5PKA6|THIC_SALPA Phosphomethylpyrimidine synthase OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=thiC PE=3 SV=1
Length = 631
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGHRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B5F1H7|THIC_SALA4 Phosphomethylpyrimidine synthase OS=Salmonella agona (strain SL483)
GN=thiC PE=3 SV=1
Length = 631
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
LL+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 LLTPKRAKAGHRVTQLHYA--RQGIVTPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q9CLQ1|MNME_PASMU tRNA modification GTPase MnmE OS=Pasteurella multocida (strain
Pm70) GN=mnmE PE=3 SV=1
Length = 452
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 23 KADARVRVLGLYKAW--IRQATLIPIDYDVPKSEEQIKEKIRSEFL 66
+A V +G+ +AW I QA I + D +++ Q EK+RSEFL
Sbjct: 274 EATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQDLEKVRSEFL 319
>sp|Q32AG7|THIC_SHIDS Phosphomethylpyrimidine synthase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q31U03|THIC_SHIBS Phosphomethylpyrimidine synthase OS=Shigella boydii serotype 4
(strain Sb227) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B2TWI1|THIC_SHIB3 Phosphomethylpyrimidine synthase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B6I5K5|THIC_ECOSE Phosphomethylpyrimidine synthase OS=Escherichia coli (strain SE11)
GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|P30136|THIC_ECOLI Phosphomethylpyrimidine synthase OS=Escherichia coli (strain K12)
GN=thiC PE=1 SV=2
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B1IUQ3|THIC_ECOLC Phosphomethylpyrimidine synthase OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q8FB77|THIC_ECOL6 Phosphomethylpyrimidine synthase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=thiC PE=3 SV=2
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|A8A794|THIC_ECOHS Phosphomethylpyrimidine synthase OS=Escherichia coli O9:H4 (strain
HS) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B1XBZ7|THIC_ECODH Phosphomethylpyrimidine synthase OS=Escherichia coli (strain K12 /
DH10B) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|C5A0T5|THIC_ECOBW Phosphomethylpyrimidine synthase OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B7M7Q3|THIC_ECO8A Phosphomethylpyrimidine synthase OS=Escherichia coli O8 (strain
IAI1) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B5Z090|THIC_ECO5E Phosphomethylpyrimidine synthase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|Q8X6X9|THIC_ECO57 Phosphomethylpyrimidine synthase OS=Escherichia coli O157:H7
GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|B7LA88|THIC_ECO55 Phosphomethylpyrimidine synthase OS=Escherichia coli (strain 55989
/ EAEC) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|A7ZUK9|THIC_ECO24 Phosphomethylpyrimidine synthase OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=thiC PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKH 70
+L+ +A A RV L+ A RQ + P + E +E+IRSE L+H+H
Sbjct: 135 VLTPKRAKAGRRVTQLHYA--RQGIITPEMEFIAIRENMGRERIRSEVLRHQH 185
>sp|P0CA06|PP62_ASFM2 Polyprotein pp62 OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-102 PE=3 SV=1
Length = 530
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 44 IPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQI-- 101
+PI Y P++ +R+E L H V + + LV++ EL +T ++ +H G I
Sbjct: 299 VPICYSDPETVHSYANHVRTEILHHNMVNKVTTPN-LVVQAYNELEQTNTI-RHYGPIFP 356
Query: 102 ------MSYWKE 107
+ +WK+
Sbjct: 357 ESTINALRFWKK 368
>sp|P0CA08|PP62_ASFWA Polyprotein pp62 OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-104 PE=3 SV=1
Length = 530
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 44 IPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQI-- 101
+PI Y P++ +R+E L H V + + LV++ EL +T ++ +H G I
Sbjct: 299 VPICYSDPETVHSYTNHVRTEILHHNAVNKVTTPN-LVVQAYNELEQTNTI-RHYGPIFP 356
Query: 102 ------MSYWKE 107
+ +WK+
Sbjct: 357 ESTINALRFWKK 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,136,018
Number of Sequences: 539616
Number of extensions: 1484862
Number of successful extensions: 4346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 4322
Number of HSP's gapped (non-prelim): 67
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)