Query psy11737
Match_columns 125
No_of_seqs 108 out of 327
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:38:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3426|consensus 100.0 5.5E-44 1.2E-48 252.0 10.8 117 8-124 4-122 (124)
2 PF05347 Complex1_LYR: Complex 99.6 1.1E-14 2.3E-19 91.2 6.5 58 28-89 1-58 (59)
3 PF13232 Complex1_LYR_1: Compl 99.5 1.8E-13 3.9E-18 86.6 7.1 59 28-90 1-59 (61)
4 KOG3801|consensus 99.5 1.6E-13 3.5E-18 93.8 6.5 74 26-107 5-78 (94)
5 KOG4620|consensus 99.1 6.2E-10 1.3E-14 73.6 6.8 62 23-89 4-67 (80)
6 KOG3466|consensus 98.7 3.1E-08 6.7E-13 72.9 6.5 71 23-101 9-79 (157)
7 PF13233 Complex1_LYR_2: Compl 97.5 0.00034 7.4E-09 48.0 6.0 68 30-101 1-75 (104)
8 KOG4100|consensus 95.8 0.081 1.8E-06 38.0 7.7 54 28-87 10-63 (125)
9 PF10436 BCDHK_Adom3: Mitochon 77.0 2.1 4.6E-05 31.9 2.3 79 27-124 55-133 (164)
10 PF04716 ETC_C1_NDUFA5: ETC co 75.3 11 0.00023 23.6 4.9 53 26-81 3-55 (57)
11 PF14420 Clr5: Clr5 domain 55.0 16 0.00036 22.1 2.8 43 20-62 2-48 (54)
12 PRK05629 hypothetical protein; 47.8 75 0.0016 25.4 6.3 45 52-96 126-170 (318)
13 TIGR01128 holA DNA polymerase 42.1 75 0.0016 24.6 5.4 73 52-124 111-194 (302)
14 PF08437 Glyco_transf_8C: Glyc 40.3 46 0.001 20.6 3.2 44 31-74 4-47 (57)
15 PRK05574 holA DNA polymerase I 39.4 1.8E+02 0.004 22.9 7.4 73 52-124 146-229 (340)
16 PF01527 HTH_Tnp_1: Transposas 32.7 63 0.0014 19.9 3.0 40 24-65 9-48 (76)
17 KOG0493|consensus 30.0 48 0.001 27.4 2.5 27 55-81 255-281 (342)
18 smart00311 PWI PWI, domain in 29.6 1.1E+02 0.0023 19.6 3.7 33 54-86 6-38 (74)
19 PF09388 SpoOE-like: Spo0E lik 29.5 1.2E+02 0.0026 17.5 3.7 35 55-95 7-41 (45)
20 PRK10292 hypothetical protein; 26.2 1.4E+02 0.0031 19.4 3.8 49 32-80 9-60 (69)
21 PRK05907 hypothetical protein; 23.9 2.3E+02 0.005 23.1 5.5 42 52-93 134-176 (311)
22 PRK13717 conjugal transfer pro 23.5 1.9E+02 0.0042 21.1 4.4 57 41-104 44-100 (128)
23 PF00601 Flu_NS2: Influenza no 23.4 49 0.0011 22.8 1.3 58 26-92 6-64 (94)
24 cd04468 S1_eIF5A S1_eIF5A: Euk 23.0 85 0.0019 20.3 2.3 23 49-71 28-50 (69)
25 PF06144 DNA_pol3_delta: DNA p 22.4 94 0.002 21.9 2.7 42 53-94 125-166 (172)
26 PF12277 DUF3618: Protein of u 21.8 1.9E+02 0.004 17.1 3.6 32 72-103 3-34 (49)
27 PF03732 Retrotrans_gag: Retro 21.6 2.1E+02 0.0046 17.6 4.4 84 28-123 9-93 (96)
28 PRK07914 hypothetical protein; 20.9 3.7E+02 0.0081 21.5 6.2 64 32-96 109-172 (320)
29 PF09447 Cnl2_NKP2: Cnl2/NKP2 20.9 1.4E+02 0.0031 19.2 3.0 30 29-67 38-67 (67)
30 PRK08487 DNA polymerase III su 20.9 3.3E+02 0.0072 21.9 5.9 41 53-93 136-176 (328)
No 1
>KOG3426|consensus
Probab=100.00 E-value=5.5e-44 Score=251.96 Aligned_cols=117 Identities=44% Similarity=0.733 Sum_probs=113.8
Q ss_pred hhhhhccccCCCCCCHHHHHHHHHHHHHHHHHHhcCcccccCC-CccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy11737 8 STIVGTKVRPLLSTTKADARVRVLGLYKAWIRQATLIPIDYDV-PKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86 (125)
Q Consensus 8 ~~~~~~~~~p~~S~~~~~ar~rVl~LYR~~lR~~p~i~~~y~l-~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~ 86 (125)
..++++.|+|+.|+|..|||++|+.|||.|||++|.|++.|+| +++++++|.+||++|.+|.|||||++||+|+.||++
T Consensus 4 ~~~av~~v~Pi~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~ 83 (124)
T KOG3426|consen 4 PFAAVKIVVPINSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGME 83 (124)
T ss_pred hhhhHhhcCCCccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHH
Confidence 3578899999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchhhh-ccccCCCCCcchHHhhhcCC
Q psy11737 87 ELRETASLFKHKGQIMSY-WKETLEPKPTDFISKFMSGS 124 (125)
Q Consensus 87 eL~e~~~~~kq~~hi~~~-f~~~~~~~~~~Fl~kFl~g~ 124 (125)
||+|++.+|||++|||+| |.|+.+++|+|||+|||.|+
T Consensus 84 elkeiv~~~kqr~Him~y~f~en~d~kptDFLskF~~g~ 122 (124)
T KOG3426|consen 84 ELKEIVDHWKQRHHIMRYYFTENKDPKPTDFLSKFYTGN 122 (124)
T ss_pred HHHHHHHHHhCchHHHHHhhcccCCCCchhHHHHHhccC
Confidence 999999999999999999 78889999999999999997
No 2
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.56 E-value=1.1e-14 Score=91.15 Aligned_cols=58 Identities=41% Similarity=0.601 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELR 89 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~ 89 (125)
++||+|||++||++..|+.. .....++..||++|++|++++||..|+.++.+|+++|+
T Consensus 1 q~vl~LYR~lLR~~~~~~~~----~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~ 58 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDD----SEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELE 58 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 47999999999999888763 24689999999999999999999999999999999986
No 3
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.47 E-value=1.8e-13 Score=86.64 Aligned_cols=59 Identities=34% Similarity=0.572 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRE 90 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e 90 (125)
++||+|||++||++..|+. |+. ..+++..||++|++|++++||..|+.++.+|+.+|..
T Consensus 1 ~~vL~LYR~lLR~~~~~~~-~~~---r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~ 59 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPD-YNF---RSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELEL 59 (61)
T ss_pred ChHHHHHHHHHHHhhhcCC-cch---HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3799999999999999965 333 3789999999999999999999999999999999974
No 4
>KOG3801|consensus
Probab=99.46 E-value=1.6e-13 Score=93.84 Aligned_cols=74 Identities=26% Similarity=0.453 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhhhc
Q psy11737 26 ARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYW 105 (125)
Q Consensus 26 ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f 105 (125)
.+++|++|||.+||++..|+ .||++ .+..++||+.|++|++++||..|+.|+.+|+..|+ ..+++.+|...|
T Consensus 5 sr~qvlsLyr~~lr~s~qfp-~YNyR---eY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Le----vikRQ~ii~~lY 76 (94)
T KOG3801|consen 5 SRRQVLSLYRNLLRESKQFP-QYNYR---EYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLE----VIKRQSIIGQLY 76 (94)
T ss_pred cHHHHHHHHHHHHHHHhhCC-cccHH---HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH----HHHHHHHHHhhc
Confidence 48999999999999999995 58887 78999999999999999999999999999999998 889999999999
Q ss_pred cc
Q psy11737 106 KE 107 (125)
Q Consensus 106 ~~ 107 (125)
.-
T Consensus 77 ~~ 78 (94)
T KOG3801|consen 77 PK 78 (94)
T ss_pred cC
Confidence 73
No 5
>KOG4620|consensus
Probab=99.06 E-value=6.2e-10 Score=73.57 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHH
Q psy11737 23 KADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVT--DIRIIDMLVIKGQMELR 89 (125)
Q Consensus 23 ~~~ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~--D~~~Id~Ll~kG~~eL~ 89 (125)
+..++++||+|||+++|.+..-+.-|+. ...+.|++||++|+++. |.-.|++|+.-|+..++
T Consensus 4 lSgLQrqVlhlYR~~lraa~~Kp~~~~~-----~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~ 67 (80)
T KOG4620|consen 4 LSGLQRQVLHLYRDLLRAARGKPGAEAR-----RWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQ 67 (80)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCchHHH-----HHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHH
Confidence 4578999999999999999988864333 35688999999999998 99999999999999998
No 6
>KOG3466|consensus
Probab=98.73 E-value=3.1e-08 Score=72.88 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy11737 23 KADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQI 101 (125)
Q Consensus 23 ~~~ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi 101 (125)
....+++|++||+.+||.+..|....|+. .+..-.||..|+.|++ .|...++.||..|++||- .|.|+.+.
T Consensus 9 ~lshkqkV~rLYKRaLR~lenWy~~rn~y---Ry~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w----~~rHpqP~ 79 (157)
T KOG3466|consen 9 RLSHKQKVRRLYKRALRDLENWYVHRNIY---RYQACIIRARFDENDE-KDVDKAIRLLAEGERELW----EWRHPQPY 79 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH---HHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH----hhcCCCcc
Confidence 34568999999999999999999988884 6778899999999999 999999999999999995 77777763
No 7
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.51 E-value=0.00034 Score=48.02 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCcccccCC---CccHHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy11737 30 VLGLYKAWIRQATLIPIDYDV---PKSEEQIKEKI----RSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQI 101 (125)
Q Consensus 30 Vl~LYR~~lR~~p~i~~~y~l---~~~~~~~r~~I----R~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi 101 (125)
|++|||.+||+.+.++..+.. ....+....+| +++|+.+.+++|+..+. ....+++++...++.+.+.
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~----~~~~~~~~y~~~L~~qr~y 75 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQ----EFLQEWENYATFLKNQREY 75 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 789999999999998765433 11115788899 99999999999666444 4445555555565555543
No 8
>KOG4100|consensus
Probab=95.79 E-value=0.081 Score=38.02 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQME 87 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~e 87 (125)
.+|.-|||.+||.-.-.+. .-+.-=-..+|+||++|+.| +|..+.-.+...+.=
T Consensus 10 ~rvrlLYkriLrlHr~lp~-----~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Y 63 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPA-----ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERY 63 (125)
T ss_pred chHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence 4666799999998766653 00111225899999999999 888887777655443
No 9
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=76.98 E-value=2.1 Score=31.90 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhhhcc
Q psy11737 27 RVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWK 106 (125)
Q Consensus 27 r~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f~ 106 (125)
=.+|.++|-+.+.....++...+... ...+...+++-.++|.++ .. .+.+|-.|+++.. -.
T Consensus 55 i~~V~~~Y~~sF~~L~~~~~~~~~~~-~~~F~~~l~~i~~~H~~v--v~----~lA~G~~E~~~~~------------~~ 115 (164)
T PF10436_consen 55 IQQVYEWYLQSFEELRSFPPPKTLED-NEKFTELLERILDRHSDV--VP----TLAQGVLELKKYL------------QS 115 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSCCH-HHHHHHHHHHHHHHTTTH--HH----HHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHhccc--HH----HHHHHHHHHHHHh------------cc
Confidence 46889999999999988877666643 357889999999999854 22 5678888887443 00
Q ss_pred ccCCCCCcchHHhhhcCC
Q psy11737 107 ETLEPKPTDFISKFMSGS 124 (125)
Q Consensus 107 ~~~~~~~~~Fl~kFl~g~ 124 (125)
...+..-..|||.||.++
T Consensus 116 ~~~~~~i~~fLd~f~~sR 133 (164)
T PF10436_consen 116 SESEEQIQSFLDRFYRSR 133 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 000123467888887653
No 10
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=75.25 E-value=11 Score=23.61 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy11737 26 ARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLV 81 (125)
Q Consensus 26 ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll 81 (125)
.|.....||.+.|+.+-.||....++ ...-+-+++.+.--....|...|+..|
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR---~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYR---QYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 46778899999999999999876665 344455556565555678888887654
No 11
>PF14420 Clr5: Clr5 domain
Probab=54.96 E-value=16 Score=22.15 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHhcCcc-cccCCCccHHHHHHHHH
Q psy11737 20 STTKADARVRVLGLYK---AWIRQATLIP-IDYDVPKSEEQIKEKIR 62 (125)
Q Consensus 20 S~~~~~ar~rVl~LYR---~~lR~~p~i~-~~y~l~~~~~~~r~~IR 62 (125)
+.++...+..+..||- ..|.++-.++ ..|++..+..+.+.+++
T Consensus 2 ~~~We~~K~~I~~LY~~e~~tl~~v~~~M~~~~~F~at~rqy~~r~~ 48 (54)
T PF14420_consen 2 DEDWEPHKEEIERLYIDENKTLEEVMEIMKEEHGFKATKRQYKRRFK 48 (54)
T ss_pred cchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4567888899999994 5566665555 55777777666666655
No 12
>PRK05629 hypothetical protein; Validated
Probab=47.75 E-value=75 Score=25.45 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11737 52 KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFK 96 (125)
Q Consensus 52 ~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~k 96 (125)
.+..++..||++.+.++.--=|+++++.|+..-..++..+.+...
T Consensus 126 ~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~Ele 170 (318)
T PRK05629 126 LKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAIS 170 (318)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHH
Confidence 446889999999999988777999999999988777776666543
No 13
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=42.10 E-value=75 Score=24.62 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcc-----------ccchhhhccccCCCCCcchHHhh
Q psy11737 52 KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKH-----------KGQIMSYWKETLEPKPTDFISKF 120 (125)
Q Consensus 52 ~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq-----------~~hi~~~f~~~~~~~~~~Fl~kF 120 (125)
.+..++..+|++.|.+..--=++.+++.|+....-++..+.+.... ..+|.+......+....+|++.+
T Consensus 111 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal 190 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDAL 190 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHH
Confidence 4567899999999998755559999999988776555544333221 11233333323355677888888
Q ss_pred hcCC
Q psy11737 121 MSGS 124 (125)
Q Consensus 121 l~g~ 124 (125)
+.|+
T Consensus 191 ~~~~ 194 (302)
T TIGR01128 191 LEGK 194 (302)
T ss_pred HCCC
Confidence 8775
No 14
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=40.31 E-value=46 Score=20.57 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCH
Q psy11737 31 LGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDI 74 (125)
Q Consensus 31 l~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~ 74 (125)
...|+++...+|+--.......+..++|..-+..|.+++.++..
T Consensus 4 ~~~F~~a~~~SPWk~~pl~~a~~~~e~r~~~Kh~~~q~ky~~~i 47 (57)
T PF08437_consen 4 AQYFRKAYKNSPWKDIPLLKAKNSKELRYKAKHLFKQGKYISGI 47 (57)
T ss_pred hHHHHHHHHcCCCCCCCCcCCCChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999987655555688899999999999999876543
No 15
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=39.41 E-value=1.8e+02 Score=22.86 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH-------hhcc----ccchhhhccccCCCCCcchHHhh
Q psy11737 52 KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETAS-------LFKH----KGQIMSYWKETLEPKPTDFISKF 120 (125)
Q Consensus 52 ~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~-------~~kq----~~hi~~~f~~~~~~~~~~Fl~kF 120 (125)
.+..++..+|++.|++..--=++.+++.|+..-..++..+.+ .... .+.|........+...-+|++.|
T Consensus 146 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai 225 (340)
T PRK05574 146 PKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAI 225 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHH
Confidence 346889999999999877666999999999886555543333 2211 11111121222346677888888
Q ss_pred hcCC
Q psy11737 121 MSGS 124 (125)
Q Consensus 121 l~g~ 124 (125)
+.|+
T Consensus 226 ~~~~ 229 (340)
T PRK05574 226 LAGK 229 (340)
T ss_pred HCCC
Confidence 8875
No 16
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=32.71 E-value=63 Score=19.87 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHH
Q psy11737 24 ADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEF 65 (125)
Q Consensus 24 ~~ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF 65 (125)
.+.+.+++.+|..-=..+..++..|++ +++.+..|+++..
T Consensus 9 ~e~K~~~v~~~~~~g~sv~~va~~~gi--~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 9 PEFKLQAVREYLESGESVSEVAREYGI--SPSTLYNWRKQYR 48 (76)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceEeeeccccc--ccccccHHHHHHh
Confidence 578899999997777888888888877 4578999999886
No 17
>KOG0493|consensus
Probab=29.95 E-value=48 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy11737 55 EQIKEKIRSEFLKHKHVTDIRIIDMLV 81 (125)
Q Consensus 55 ~~~r~~IR~eF~~nr~v~D~~~Id~Ll 81 (125)
.+.-.+++.||..|+++|..+.-..--
T Consensus 255 aeQL~RLK~EF~enRYlTEqRRQ~La~ 281 (342)
T KOG0493|consen 255 AEQLQRLKAEFQENRYLTEQRRQELAQ 281 (342)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 345589999999999999877554433
No 18
>smart00311 PWI PWI, domain in splicing factors.
Probab=29.61 E-value=1.1e+02 Score=19.56 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy11737 54 EEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86 (125)
Q Consensus 54 ~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~ 86 (125)
...++.||.+.....=++.|+.+||+.+...+.
T Consensus 6 ~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~ 38 (74)
T smart00311 6 LDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQ 38 (74)
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 467899999999999999999999999877654
No 19
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=29.49 E-value=1.2e+02 Score=17.49 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11737 55 EQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLF 95 (125)
Q Consensus 55 ~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~ 95 (125)
..+|..+-+..+++ +.+||++|+. -.+|+++++.+
T Consensus 7 e~~R~~L~~~~~~~-~l~~~~vl~~-----Sq~LD~lI~~y 41 (45)
T PF09388_consen 7 EELRQELNELAEKK-GLTDPEVLEL-----SQELDKLINEY 41 (45)
T ss_dssp HHHHHHHHHHHHHC-CTTCHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHH-----HHHHHHHHHHH
Confidence 45777777778777 9999998753 45666666654
No 20
>PRK10292 hypothetical protein; Provisional
Probab=26.18 E-value=1.4e+02 Score=19.39 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCcc-cccCC--CccHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy11737 32 GLYKAWIRQATLIP-IDYDV--PKSEEQIKEKIRSEFLKHKHVTDIRIIDML 80 (125)
Q Consensus 32 ~LYR~~lR~~p~i~-~~y~l--~~~~~~~r~~IR~eF~~nr~v~D~~~Id~L 80 (125)
.||+++||-+-+.. ...++ ....-.+..-||-+....+.-.|..+|..+
T Consensus 9 ~lY~EmCRVVGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 9 ELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 69999999886653 22233 123345677788888888888887776654
No 21
>PRK05907 hypothetical protein; Provisional
Probab=23.85 E-value=2.3e+02 Score=23.11 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHH
Q psy11737 52 KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKG-QMELRETAS 93 (125)
Q Consensus 52 ~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG-~~eL~e~~~ 93 (125)
....++..||.+.++++.--=++.+++.|+... ..+|..+.+
T Consensus 134 l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~ 176 (311)
T PRK05907 134 DRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILS 176 (311)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHH
Confidence 445789999999999999888999999999976 566654444
No 22
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=23.46 E-value=1.9e+02 Score=21.06 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=42.1
Q ss_pred hcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy11737 41 ATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSY 104 (125)
Q Consensus 41 ~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~ 104 (125)
.|.+ ..||+.-+.+.+...+ .-++++ ...++.|...-...|+..+..|.+++|+.=.
T Consensus 44 ~P~i-V~FDmK~Tld~F~~Q~-----~~~~lt-e~q~e~lt~rF~~aL~~~L~~yq~~H~~VIL 100 (128)
T PRK13717 44 APVT-AAFNMKQTVDAFFDSA-----SQKQLS-EAQSKALSARFNTALEASLQAWQQKHHAVIL 100 (128)
T ss_pred CCeE-EEEehHHHHHHHHHHH-----hccCCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 5777 5677776665554444 234444 7789999999999999999999999986433
No 23
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=23.41 E-value=49 Score=22.83 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhcCcc-cccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11737 26 ARVRVLGLYKAWIRQATLIP-IDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETA 92 (125)
Q Consensus 26 ar~rVl~LYR~~lR~~p~i~-~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~ 92 (125)
++-.-|++||++|=++-... +.+.+..+-...|..+-+.|+ .|+-||..-+..|..+.
T Consensus 6 Tqfe~LKlyrdSlge~vmr~gD~h~lq~rn~~wreqL~qkfe---------~IrwlI~e~r~~l~~te 64 (94)
T PF00601_consen 6 TQFESLKLYRDSLGESVMRMGDYHSLQSRNGKWREQLGQKFE---------EIRWLIEEHRHRLKITE 64 (94)
T ss_dssp -------------------------------CHHHHHHHHHH---------HHHHHHHHHHHC----T
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 45667899999998887666 333444333445555555554 35555554444444333
No 24
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=22.97 E-value=85 Score=20.34 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.9
Q ss_pred CCCccHHHHHHHHHHHHHhcCCC
Q psy11737 49 DVPKSEEQIKEKIRSEFLKHKHV 71 (125)
Q Consensus 49 ~l~~~~~~~r~~IR~eF~~nr~v 71 (125)
++.+|..++-..|++.|+..+.+
T Consensus 28 DlklP~~elg~~I~~~f~~gk~~ 50 (69)
T cd04468 28 DLKLPEGELGKEIREKFDEGKDV 50 (69)
T ss_pred CCcCCcHHHHHHHHHHHhCCCcE
Confidence 44566689999999999887654
No 25
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=22.43 E-value=94 Score=21.90 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11737 53 SEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASL 94 (125)
Q Consensus 53 ~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~ 94 (125)
...++..+|++.|+++.--=|+.+++.|+..-..++..+.+.
T Consensus 125 ~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~E 166 (172)
T PF06144_consen 125 KEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNE 166 (172)
T ss_dssp -TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHH
Confidence 446789999999999877779999999999888777655543
No 26
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=21.79 E-value=1.9e+02 Score=17.09 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy11737 72 TDIRIIDMLVIKGQMELRETASLFKHKGQIMS 103 (125)
Q Consensus 72 ~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~ 103 (125)
.||..|+.=|...+.+|.+++.....+.+..+
T Consensus 3 ~~~~~ie~dIe~tR~~La~tvd~L~~r~~P~~ 34 (49)
T PF12277_consen 3 RSPDEIERDIERTRAELAETVDELAARLSPKR 34 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 57999999999999999999888766655433
No 27
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=21.64 E-value=2.1e+02 Score=17.64 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHHHhhccccchhhhcc
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIR-IIDMLVIKGQMELRETASLFKHKGQIMSYWK 106 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~-~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f~ 106 (125)
-.+..-|+.+....+.- ..+=.++...+++.|.......... .+..|-. +.+.+.+.++.+..-.+.+..
T Consensus 9 g~A~~w~~~~~~~~~~~------~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~-- 79 (96)
T PF03732_consen 9 GPARQWYRNLRPNEIRD------FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPP-- 79 (96)
T ss_pred CHHHHHHHHhHhcCCCC------CCCHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCC--
Confidence 34555666666665442 1222678888999888743333222 2333333 344444333333221111111
Q ss_pred ccCCCCCcchHHhhhcC
Q psy11737 107 ETLEPKPTDFISKFMSG 123 (125)
Q Consensus 107 ~~~~~~~~~Fl~kFl~g 123 (125)
.-.....+..|+.|
T Consensus 80 ---~~~e~~~v~~f~~G 93 (96)
T PF03732_consen 80 ---PMDEEMLVERFIRG 93 (96)
T ss_pred ---CcCHHHHHHHHHHC
Confidence 24457888888888
No 28
>PRK07914 hypothetical protein; Reviewed
Probab=20.92 E-value=3.7e+02 Score=21.47 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11737 32 GLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFK 96 (125)
Q Consensus 32 ~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~k 96 (125)
++|+..-+..-.+...+.+ .+..++..||++.+++..--=++.+++.|+.....+|.++.+...
T Consensus 109 k~~K~L~k~g~~~v~~~~~-~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~Ele 172 (320)
T PRK07914 109 ALANQLRKLGAEVHPCARI-TKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACS 172 (320)
T ss_pred HHHHHHHHCCCEEEecCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHH
Confidence 5566543332223343333 145789999999999777667999999999988777776666544
No 29
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=20.91 E-value=1.4e+02 Score=19.19 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHh
Q psy11737 29 RVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLK 67 (125)
Q Consensus 29 rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~ 67 (125)
.|..|||.+...=-.. .+.++..|.+||++
T Consensus 38 ~ir~LYr~Lq~qR~~~---------~d~V~~nI~~e~~r 67 (67)
T PF09447_consen 38 QIRSLYRDLQAQREQV---------LDKVRENIDQEFKR 67 (67)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcC
Confidence 4667888765543322 25678888888764
No 30
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=20.86 E-value=3.3e+02 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11737 53 SEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETAS 93 (125)
Q Consensus 53 ~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~ 93 (125)
+..++..||++.+.+..--=|+++++.|+..-..+|..+.+
T Consensus 136 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ 176 (328)
T PRK08487 136 NAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAAN 176 (328)
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHH
Confidence 35789999999999988888999999999986666654433
Done!