Query psy11737
Match_columns 125
No_of_seqs 108 out of 327
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:38:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_A Histone deacetylase com 35.4 45 0.0015 22.0 3.7 62 18-86 19-80 (94)
2 3ukn_A Novel protein similar t 24.0 52 0.0018 22.8 2.7 33 32-67 12-44 (212)
3 4h9n_C Death domain-associated 22.7 66 0.0023 24.2 3.2 50 18-67 82-142 (212)
4 2ptm_A Hyperpolarization-activ 22.3 60 0.002 22.2 2.7 54 32-88 8-64 (198)
5 2w2u_A Hypothetical P60 katani 21.7 20 0.00067 22.8 0.0 44 22-65 30-73 (83)
6 3iv1_A Tumor susceptibility ge 20.9 68 0.0023 20.5 2.5 44 55-98 10-54 (78)
7 3bpz_A Potassium/sodium hyperp 20.5 79 0.0027 21.6 3.1 33 32-67 9-41 (202)
8 1z7l_A Ubiquitin-activating en 20.1 55 0.0019 25.3 2.3 40 45-84 17-65 (276)
9 1x4q_A U4/U6 small nuclear rib 17.6 2E+02 0.0068 18.4 4.3 34 52-85 13-46 (92)
10 2rn7_A IS629 ORFA; helix, all 16.4 1.8E+02 0.0061 18.0 3.9 42 24-68 9-57 (108)
No 1
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=35.37 E-value=45 Score=22.00 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy11737 18 LLSTTKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQM 86 (125)
Q Consensus 18 ~~S~~~~~ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~ 86 (125)
.+..++......+|.=|++.++. ..+. ..+..++...|+.-|.. ..|...++|-..|.+.+.
T Consensus 19 ~p~vdf~kL~~~tLrrY~r~y~L--~~~~----~~sK~qLa~aV~kHF~s-~~VdE~evI~~Fly~VK~ 80 (94)
T 2ld7_A 19 TPEVDLYQLQVNTLRRYKRHFKL--PTRP----GLNKAQLVEIVGCHFKS-IPVNEKDTLTCFIYSVRN 80 (94)
T ss_dssp CCCCCCSSSCHHHHHHHHHHTTC--CCCS----SCCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHCCHHHHHHHHHHhCC--CCCC----CCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh
Confidence 33455556668888999988876 2333 47889999999999975 669888999888887654
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=24.00 E-value=52 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHh
Q psy11737 32 GLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLK 67 (125)
Q Consensus 32 ~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~ 67 (125)
.-|++-++.+-.++..++++ ..++.+||+.|+-
T Consensus 12 ~~~~~~~~~i~~ym~~~~i~---~~l~~rv~~y~~~ 44 (212)
T 3ukn_A 12 SLYHTRTKDLKDFIRVHRLP---KALAQRMLECFQT 44 (212)
T ss_dssp CHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 45888888888888888888 7888888888864
No 3
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=22.74 E-value=66 Score=24.25 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHHHHHhcCcccccCCCccHHHHHHHHHHHHHh
Q psy11737 18 LLSTTKADARVRVLGL-----------YKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLK 67 (125)
Q Consensus 18 ~~S~~~~~ar~rVl~L-----------YR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~ 67 (125)
+.+-...+.-+.|-++ |.++++++..-...++|.++..++..-.++.|.+
T Consensus 82 f~~T~yp~vNr~I~~fvN~~~~~~FPDy~DIl~~v~~~N~~~~L~l~~~~~~~iA~daF~~ 142 (212)
T 4h9n_C 82 YRGTRYPEVNRRIERLINKPGPDTFPDYGDVLRAVEKAAARHSLGLPRQQLQLMAQDAFRD 142 (212)
T ss_dssp CCCSSCHHHHHHHHHHHTCSSTTCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3444556666666655 4667888888888889999999998888888864
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=22.26 E-value=60 Score=22.16 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHH
Q psy11737 32 GLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKH---KHVTDIRIIDMLVIKGQMEL 88 (125)
Q Consensus 32 ~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~n---r~v~D~~~Id~Ll~kG~~eL 88 (125)
.-|++-++.+-.++...+++ ..++.+||+.|+-+ +...+...++.|=..=+.++
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~---~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i 64 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLP---SHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHH
Confidence 46888889998999988988 78888888877643 44555555555544444443
No 5
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.67 E-value=20 Score=22.84 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHH
Q psy11737 22 TKADARVRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEF 65 (125)
Q Consensus 22 ~~~~ar~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF 65 (125)
+..+-..+.+.+|.+.+-..-.++..+.=......++.++.+..
T Consensus 30 D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~ 73 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYK 73 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44444778899999888877666543211223334555554443
No 6
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.92 E-value=68 Score=20.48 Aligned_cols=44 Identities=11% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11737 55 EQIKEKIRSEFLKHKH-VTDIRIIDMLVIKGQMELRETASLFKHK 98 (125)
Q Consensus 55 ~~~r~~IR~eF~~nr~-v~D~~~Id~Ll~kG~~eL~e~~~~~kq~ 98 (125)
..+|.++++.|.++.. +.-.+...-=|..|+..|+++++...+.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E 54 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5789999999998874 3345566667889999999888766553
No 7
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=20.46 E-value=79 Score=21.65 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHh
Q psy11737 32 GLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLK 67 (125)
Q Consensus 32 ~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~ 67 (125)
.-|++-++.+-.++...+++ ..++.+|++.|+-
T Consensus 9 ~~~~~~~~~i~~~m~~~~i~---~~l~~rv~~y~~~ 41 (202)
T 3bpz_A 9 RQYQEKYKQVEQYMSFHKLP---ADFRQKIHDYYEH 41 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 56888888888898888888 7888888887763
No 8
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=20.13 E-value=55 Score=25.28 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=30.1
Q ss_pred ccccCCCccHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHH
Q psy11737 45 PIDYDVPKSEEQIKEKIRSEFLK---------HKHVTDIRIIDMLVIKG 84 (125)
Q Consensus 45 ~~~y~l~~~~~~~r~~IR~eF~~---------nr~v~D~~~Id~Ll~kG 84 (125)
|+..+.+.....+-.|.|+.|+. |..++||..|+.+...+
T Consensus 17 CTlrsfP~~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~ 65 (276)
T 1z7l_A 17 CTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLA 65 (276)
T ss_dssp HHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSHHHHHHHTSS
T ss_pred eccCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHhhcChHHHHHHHhcc
Confidence 45556666677888999999854 67888998888777543
No 9
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.60 E-value=2e+02 Score=18.45 Aligned_cols=34 Identities=6% Similarity=0.040 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy11737 52 KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQ 85 (125)
Q Consensus 52 ~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~ 85 (125)
.....++.||.+...+-=++.|+.+||+.+..-+
T Consensus 13 v~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~ 46 (92)
T 1x4q_A 13 RELDELKPWIEKTVKRVLGFSEPTVVTAALNCVG 46 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3447899999999999999999999999987655
No 10
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=16.43 E-value=1.8e+02 Score=18.03 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHH-------HHhcCcccccCCCccHHHHHHHHHHHHHhc
Q psy11737 24 ADARVRVLGLYKAWI-------RQATLIPIDYDVPKSEEQIKEKIRSEFLKH 68 (125)
Q Consensus 24 ~~ar~rVl~LYR~~l-------R~~p~i~~~y~l~~~~~~~r~~IR~eF~~n 68 (125)
.+.+.+|+.+|.+.- ..+..++..|.+ +...+..|++. |+.+
T Consensus 9 ~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gI--s~~tl~~W~~~-~~~~ 57 (108)
T 2rn7_A 9 PEVRQRAVRMVLESQGEYDSQWATICSIAPKIGC--TPETLRVWVRQ-HERD 57 (108)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTS--CHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHCc--CHHHHHHHHHH-HHhc
Confidence 577889999997543 466667777766 45778888886 4443
Done!