Query psy11737
Match_columns 125
No_of_seqs 108 out of 327
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 17:39:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11737.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11737hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gkza1 a.29.5.1 (A:38-185) Br 38.8 11 0.0008 25.0 3.0 54 28-88 56-109 (148)
2 d1ic8a2 a.35.1.1 (A:87-180) He 29.0 4.1 0.0003 25.6 -0.6 48 76-123 17-64 (94)
3 d1jm6a1 a.29.5.1 (A:1003-1169) 28.4 14 0.001 25.0 2.1 12 113-124 141-152 (167)
4 d1wkca_ c.124.1.6 (A:) Hypothe 26.1 79 0.0057 20.4 6.8 59 53-119 2-60 (175)
5 d1q3ea_ b.82.3.2 (A:) HCN pace 25.6 33 0.0024 22.1 3.6 45 32-79 5-52 (193)
6 d1y8oa1 a.29.5.1 (A:13-176) Py 24.3 64 0.0047 21.3 5.0 56 28-89 66-122 (164)
7 d1soua_ c.124.1.6 (A:) Hypothe 22.5 58 0.0042 21.5 4.6 63 59-122 4-66 (194)
8 d1l8qa2 c.37.1.20 (A:77-289) C 19.5 94 0.0068 20.5 5.2 43 53-95 166-210 (213)
9 d1zoqc1 a.153.1.1 (C:2065-2111 18.9 34 0.0025 18.3 2.0 27 14-44 6-32 (47)
10 d1cqxa1 a.1.1.2 (A:1-150) Flav 17.2 1.1E+02 0.0082 18.8 5.8 54 28-81 23-78 (150)
No 1
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.78 E-value=11 Score=25.05 Aligned_cols=54 Identities=28% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMEL 88 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL 88 (125)
.+|.++|-+++.+...++...+.. ....+...+.+-..+|.+| | -.+.+|-.|+
T Consensus 56 ~~V~~~Y~~SF~~l~~~~~~~~~e-d~~~F~~~l~~i~~rH~~v-----v-~tlA~G~~E~ 109 (148)
T d1gkza1 56 LHVHELYIRAFQKLTDFPPIKDQA-DEAQYCQLVRQLLDDHKDV-----V-TLLAEGLRES 109 (148)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSHH-HHHHHHHHHHHHHHHTTTH-----H-HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCCCChH-HHHHHHHHHHHHHHHhcch-----H-HHHHHHHHHH
Confidence 577888888888777776654442 1245666666666666542 2 2455665554
No 2
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.05 E-value=4.1 Score=25.63 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhccccCCCCCcchHHhhhcC
Q psy11737 76 IIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFISKFMSG 123 (125)
Q Consensus 76 ~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f~~~~~~~~~~Fl~kFl~g 123 (125)
.+|.|+.++.....+.+..|-++++|.+--.-...+....-|+.||.|
T Consensus 17 eVE~llr~d~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~ 64 (94)
T d1ic8a2 17 VVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNK 64 (94)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHcccHHHHHHHHhC
Confidence 577888888888888888888888875543322235556667777765
No 3
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=28.43 E-value=14 Score=24.97 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=9.1
Q ss_pred CcchHHhhhcCC
Q psy11737 113 PTDFISKFMSGS 124 (125)
Q Consensus 113 ~~~Fl~kFl~g~ 124 (125)
-..|||.||.+|
T Consensus 141 i~~FLdrf~~sR 152 (167)
T d1jm6a1 141 IQYFLDRFYLSR 152 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467999998753
No 4
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}
Probab=26.11 E-value=79 Score=20.37 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhhhccccCCCCCcchHHh
Q psy11737 53 SEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFISK 119 (125)
Q Consensus 53 ~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f~~~~~~~~~~Fl~k 119 (125)
+..++|.++|+.-.+- |...+...+..--.++. .++....|+-|+.-..+....++++.
T Consensus 2 ~K~~lRk~~r~~r~~l----~~~~~s~~i~~~l~~~~----~~~~~~~I~~Y~p~~~Evdt~~li~~ 60 (175)
T d1wkca_ 2 TKAELRRRARAAWRRL----DLKALSRAVGAALLPWL----RERGFRHILLYHPLPHELNLLPLMEA 60 (175)
T ss_dssp CHHHHHHHHHHHHHTS----CHHHHHHHHHHHHHHHH----HHHTCCEEECCCCCTTCCCCTTHHHH
T ss_pred CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHH----HhcCCCEEEEEEeECCccCcchhhhc
Confidence 4566777766654432 55555554444333332 34566678888765455666677664
No 5
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.57 E-value=33 Score=22.05 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCcccccCCCccHHHHHHHHHHHHH---hcCCCCCHHHHHH
Q psy11737 32 GLYKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFL---KHKHVTDIRIIDM 79 (125)
Q Consensus 32 ~LYR~~lR~~p~i~~~y~l~~~~~~~r~~IR~eF~---~nr~v~D~~~Id~ 79 (125)
..|++-+..+-.++...+++ ..++.+|++.|+ +++.+.+...++.
T Consensus 5 ~~f~~~~~~i~~~m~~~~i~---~~l~~rv~~y~~~~~~~~~~~~~~i~~~ 52 (193)
T d1q3ea_ 5 RQYQEKYKQVEQYMSFHKLP---ADFRQKIHDYYEHRYQGKMFDEDSILGE 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 56888888998888888887 678888888775 3455544444333
No 6
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.33 E-value=64 Score=21.28 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCcccccCCC-ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVP-KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELR 89 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~-~~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~ 89 (125)
.+|..+|-+++.+...++..-.-+ .....+..-+..-..+|.+ +| -.+.+|=.|+.
T Consensus 66 ~~V~~~Y~~SF~~l~~f~~~~~~~~~~~~~F~~~L~~i~~rH~~-----vv-~tlA~G~~E~k 122 (164)
T d1y8oa1 66 GLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHND-----VV-PTMAQGVIEYK 122 (164)
T ss_dssp HHHHHHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHHHHHHHGGG-----HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhh-----hH-HHHHHHHHHHH
Confidence 458888888887776664210000 1112355556666666653 22 24566777765
No 7
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}
Probab=22.51 E-value=58 Score=21.53 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccccchhhhccccCCCCCcchHHhhhc
Q psy11737 59 EKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMSYWKETLEPKPTDFISKFMS 122 (125)
Q Consensus 59 ~~IR~eF~~nr~v~D~~~Id~Ll~kG~~eL~e~~~~~kq~~hi~~~f~~~~~~~~~~Fl~kFl~ 122 (125)
..+|.++.+.+.--++..+...=.+-...|.++. .|+....|+-|+.-..+....++++..+.
T Consensus 4 ~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~-~~~~~~~I~~Y~p~~~Evdt~~li~~l~~ 66 (194)
T d1soua_ 4 SELRKKVLHKRINLSEEERRRLSEKVISNLKSLP-EFKKSKKVALYCPIKGEVDLTPLFPEVLK 66 (194)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCH-HHHHCCEEEECCCCSSCCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhH-HhhcCCEEEEEecccccCChHHHHHHHhh
Confidence 4455555554444455555544444444444332 35666678888765556666777765543
No 8
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=19.50 E-value=94 Score=20.52 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HHHHHHHHhh
Q psy11737 53 SEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQ--MELRETASLF 95 (125)
Q Consensus 53 ~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll~kG~--~eL~e~~~~~ 95 (125)
+-...+..++..+....-.=+.++++.|+.... .+|+.+++..
T Consensus 166 ~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~~~R~L~~~l~~l 210 (213)
T d1l8qa2 166 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKNVREIEGKIKLI 210 (213)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 334555667777755444448999999999877 7888777653
No 9
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.88 E-value=34 Score=18.27 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHhcCc
Q psy11737 14 KVRPLLSTTKADARVRVLGLYKAWIRQATLI 44 (125)
Q Consensus 14 ~~~p~~S~~~~~ar~rVl~LYR~~lR~~p~i 44 (125)
.+++..|.+..+.+.+||+. ||+-|.+
T Consensus 6 Ll~tLrsP~sP~QQqQvL~I----LksNP~l 32 (47)
T d1zoqc1 6 LLRTLKSPSSPQQQQQVLNI----LKSNPQL 32 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHH----HHTCHHH
T ss_pred HHHHhcCCCCHHHHHHHHHH----HHcCHHH
Confidence 45677888999999999975 4444444
No 10
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=17.16 E-value=1.1e+02 Score=18.77 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCc--cHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy11737 28 VRVLGLYKAWIRQATLIPIDYDVPK--SEEQIKEKIRSEFLKHKHVTDIRIIDMLV 81 (125)
Q Consensus 28 ~rVl~LYR~~lR~~p~i~~~y~l~~--~~~~~r~~IR~eF~~nr~v~D~~~Id~Ll 81 (125)
.=+..+|.+++..-|.+...++... ...+.++-...-...=.++.|++.+.-++
T Consensus 23 ~~~~~ff~rlF~~~P~~~~~F~~~~~~~~~h~~~~~~~l~~~V~~Ld~~~~l~~~l 78 (150)
T d1cqxa1 23 DIIKCFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPNSLMAVL 78 (150)
T ss_dssp HHHHHHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3467899999999999988876532 22444444444444445678888665433
Done!