RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11737
(125 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 8e-04
Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 52/138 (37%)
Query: 24 ADARVRVLG----LY--KAWIRQATLIPIDYD---VPKSEEQIKEKIRSEFLK-----HK 69
A V V G LY +R+A P D +P SE K K + FL H
Sbjct: 374 AKNLV-VSGPPQSLYGLNLTLRKAK-APSGLDQSRIPFSER--KLKFSNRFLPVASPFHS 429
Query: 70 H----VTDIRIIDM----LVIKGQM------------ELRE-----TASLFKHKGQIMS- 103
H +D+ D+ + + +LR + + I+
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD---CIIRL 486
Query: 104 --YWKETLEPKPT---DF 116
W+ T + K T DF
Sbjct: 487 PVKWETTTQFKATHILDF 504
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.008
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 34 YKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIID 78
Y W+ T P+D ++ +K K + L+H + IR+I+
Sbjct: 873 YTGWVDSKTKEPVD------DKDVKAKYETSILEH---SGIRLIE 908
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.25
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 47 DYDVPKSEEQIKEKIRSEFLKHK----------HVTDIRIID-------MLVIKGQMELR 89
++ I+ ++R LK K +V + + + +L+ ++
Sbjct: 220 SSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 90 ETASLFKHKGQIMSYWKETLEPKPT-DFISKFMSGSP 125
+ S + + TL P + K++ P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Score = 29.4 bits (65), Expect = 0.34
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 47 DYDVPKSEEQIKEKIRSEFLKH----KHVTD--IRIIDMLVIKGQMELRETASLF----- 95
++D ++ K + E + H K +R+ L+ K + E F
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE----EMVQKFVEEVL 87
Query: 96 -KHKGQIMSYWKETLEPK-PTDFISKFMS 122
+ +MS K E + P+ ++
Sbjct: 88 RINYKFLMSPIKT--EQRQPSMMTRMYIE 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.62
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 54 EEQ-IKEKIRSEFLKHKHVTDIRIIDMLVIKGQME 87
E+Q +K K+++ LK + D L IK ME
Sbjct: 18 EKQALK-KLQAS-LK-LYADDS--APALAIKATME 47
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 28.0 bits (62), Expect = 0.96
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 37 WIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIR 75
W + IP D P + + + + +R
Sbjct: 172 WGDKEHEIPFDIYHPATRKFVFDTFEQWLKDSPQTDVVR 210
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon
dioxide fixation, complex (rubisco-reaction intermedi
high specificity factor; HET: KCX CAP; 2.40A {Galdieria
partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Length = 493
Score = 27.0 bits (59), Expect = 1.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 102 MSYWKETLEPKPTDFISKF 120
M YW + K TD ++ F
Sbjct: 31 MGYWNPDYQVKDTDVLALF 49
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 26.4 bits (59), Expect = 2.6
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 45 PIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRII 77
D D + + + I + I+
Sbjct: 218 HADIDEGELSTYMSDYINDAIKDFFPEDTVTIV 250
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 26.5 bits (58), Expect = 2.7
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 34 YKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIID 78
Y W+ T P+D ++ +K K + L+H + IR+I+
Sbjct: 1072 YTGWVDSKTKEPVD------DKDVKAKYETSILEH---SGIRLIE 1107
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.1 bits (57), Expect = 4.9
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 34 YKAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRIID 78
Y W+ T P+D ++ +K K L+H + IR+I+
Sbjct: 1047 YSGWVDAKTGEPVD------DKDVKAKYEKYILEH---SGIRLIE 1082
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco,
photosynthesis, alpha/beta barrel, N-methylmethioni
translational modification, lyase; HET: KCX CAP; 1.35A
{Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A*
3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L
1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A*
1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Length = 477
Score = 25.8 bits (56), Expect = 5.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 102 MSYWKETLEPKPTDFISKF 120
++Y+ E K TD ++ F
Sbjct: 22 LTYYTPEYETKDTDILAAF 40
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 25.6 bits (55), Expect = 5.7
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 102 MSYWKETLEPKPTDFISKF 120
++ +E L + +
Sbjct: 34 LALKEEDLIAGGEHVLCAY 52
>2gnx_A Hypothetical protein; structural genomics, protein structure
initiative, PSI, center for eukaryotic structural
genomics, CESG, unknown function; 2.45A {Mus musculus}
SCOP: a.246.3.1 d.109.3.1
Length = 344
Score = 25.6 bits (55), Expect = 5.9
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 26 ARVRVLGLYKAWIRQATLIPIDY-DVPKSEEQIKEKIRSEF-------LKHKHVTDIRII 77
AR+ + Y+ +T I+ ++ + + I K S F L+ ++ ++
Sbjct: 34 ARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVL 93
Query: 78 DMLVIKGQMELRE-----TASLFKHKGQIMSYWKETLEPKPTDFISKFMSGS 124
L +K Q ++ E + + + W +T E + F S
Sbjct: 94 SHL-LKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQS 144
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural
genomics, NPPSFA, national Pro protein structural and
functional analyses; 1.90A {Pyrococcus horikoshii} SCOP:
c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Length = 430
Score = 25.1 bits (54), Expect = 7.5
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 102 MSYWKETLEPKPTDFISKF 120
+ + EP + I ++
Sbjct: 12 LDFVDLNYEPGRDELIVEY 30
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 24.8 bits (55), Expect = 9.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 50 VPKSEEQIKEKIRSEFLKHKHVTDIRIIDMLV 81
+ + E+++ E +H V DIR +LV
Sbjct: 347 SAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLV 378
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,855,454
Number of extensions: 101920
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 19
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)