RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11737
         (125 letters)



>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 28.2 bits (61), Expect = 0.25
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 52  KSEEQIKEKIRSEFLKHKHVTDIRIIDMLVIKGQMELRETASLFKHKGQIMS 103
           +  EQ+K +IR         T  +I + +   G++++R   +L  H  +I +
Sbjct: 9   QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60


>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 333

 Score = 25.5 bits (54), Expect = 2.1
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 7/42 (16%)

Query: 35  KAWIRQATLIPIDYDVPKSEEQIKEKIRSEFLKHKHVTDIRI 76
            A++R    + I +  P    +IKE +  E+L    +   RI
Sbjct: 299 NAYVR----LNIGWRKPFDLTEIKELLNVEYL---KIDTWRI 333


>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 140

 Score = 24.7 bits (54), Expect = 2.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 102 MSYWKETLEPKPTDFISKF 120
           ++Y+    E K TD ++ F
Sbjct: 12  LTYYTPEYETKDTDILAAF 30


>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
          Length = 144

 Score = 23.9 bits (52), Expect = 5.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 102 MSYWKETLEPKPTDFISKF 120
           M YW    + K TD ++ F
Sbjct: 17  MGYWNPDYQVKDTDVLALF 35


>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 201

 Score = 24.0 bits (52), Expect = 6.1
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query: 95  FKH-----KGQIMSYWKETLEPKPTDFIS 118
            +H     +  I ++  E    + TDF+S
Sbjct: 76  VEHWFYPQENIIDTFVVENANGEVTDFLS 104


>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 23.3 bits (50), Expect = 9.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 88  LRETASLFKHKGQIMSYWKETLEPKPTDFIS 118
                SL   K  I SY  E  + K TDF S
Sbjct: 80  FIGEESLPLDKQVIFSYVVEQPDGKITDFFS 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,186
Number of extensions: 19481
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 13
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)