BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11738
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32KL4|RMD1_BOVIN Regulator of microtubule dynamics protein 1 OS=Bos taurus GN=RMDN1
PE=2 SV=1
Length = 317
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 139/215 (64%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 87 EEVLEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSGT-SEEEKKFL 145
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E A HKW A+ + + EG KA+I IK H KAIEL P
Sbjct: 146 VYEALEYAKRALEKNESSCAAHKWYAICIGDVGDYEGIKAKIANAYIIKEHFEKAIELNP 205
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ + +MPWYQR+IA +F T P S+YEEAL YF AE+ P FYS+N
Sbjct: 206 KDATSIHLMGIWCYTVAEMPWYQRRIAKVLFATPPGSTYEEALGYFHRAEQVDPNFYSKN 265
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 266 LLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDK 300
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ + +MPWYQR+IA +F T P S+YEEAL YF AE+ P FYS+N+L+LGKTY++L
Sbjct: 218 CYTVAEMPWYQRRIAKVLFATPPGSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLH 277
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLE 315
N + AA++L K+YPA E K ++
Sbjct: 278 NKKLAAFWLTKAKDYPAHTEEDKQIQ 303
>sp|Q96DB5|RMD1_HUMAN Regulator of microtubule dynamics protein 1 OS=Homo sapiens
GN=RMDN1 PE=1 SV=1
Length = 314
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 141/215 (65%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 84 EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRT-SEEEKKLL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E +A HKW A+ L++ EG KA+I IK H KAIEL P
Sbjct: 143 VYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 297
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N+L+LGKTY++L
Sbjct: 215 CYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLH 274
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLE 315
N + AA++L K+YPA E K ++
Sbjct: 275 NKKLAAFWLMKAKDYPAHTEEDKQIQ 300
>sp|Q5R8E4|RMD1_PONAB Regulator of microtubule dynamics protein 1 OS=Pongo abelii
GN=RMDN1 PE=2 SV=1
Length = 314
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 84 EEILEQADYLCESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRT-SEEEKKLL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E +A HKW A+ L++ EG KA+I IK H KAIEL P
Sbjct: 143 VYEALEYAKRALEKNESSFAAHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALSYFHRAEQVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 297
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N+L+LGKTY++L
Sbjct: 215 CYTFAEMPWYQRRIAKMLFATPPSSTYEKALSYFHRAEQVDPNFYSKNLLLLGKTYLKLH 274
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLE 315
N + AA++L K+YPA E K ++
Sbjct: 275 NKKLAAFWLMKAKDYPAHTEEDKQIQ 300
>sp|Q4G069|RMD1_RAT Regulator of microtubule dynamics protein 1 OS=Rattus norvegicus
GN=Rmdn1 PE=2 SV=1
Length = 310
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 138/215 (64%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + EDVE++WRL R ++A + S+ +KK L
Sbjct: 84 EEILEQADYLYESGETEKLYQLLTQYKESEDVELLWRLARASRDIAQLCKT-SEEEKKVL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL + +A HKW A+ +++ EG K +I IK H KAIEL P
Sbjct: 143 LYEALEYAKRALEKKGSSFAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEALKYF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAEVLFANPPSSTYEEALKYFHRAEEVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLNNKKLAAFWLVKAKSYPAHTEEDK 297
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ +MPWYQR+IA +F P+S+YEEALKYF AE+ P FYS+N+L+LGKTY++L
Sbjct: 215 CYTFAEMPWYQRRIAEVLFANPPSSTYEEALKYFHRAEEVDPNFYSKNLLLLGKTYLKLN 274
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLE 315
N + AA++L K+YPA E K ++
Sbjct: 275 NKKLAAFWLVKAKSYPAHTEEDKQIQ 300
>sp|Q9DCV4|RMD1_MOUSE Regulator of microtubule dynamics protein 1 OS=Mus musculus
GN=Rmdn1 PE=2 SV=2
Length = 305
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 137/215 (63%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L ++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 79 EEILAQADYLYESGETEKLYQLLIQYKESEDGELLWRLARASRDIAQLSKT-SEEEKKVL 137
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL + E A HKW A+ +++ EG K +I IK H KAIEL P
Sbjct: 138 VYEALDYAKRALEKKESSSAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNP 197
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEAL+YF +AE+ P FYS+N
Sbjct: 198 KDATSIHLMGIWCYTFAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKN 257
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K YP ++D+
Sbjct: 258 LLLLGKTYLKLNNKKLAAFWLVKAKGYPAHTEEDK 292
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ +MPWYQR+IA +F P+S+YEEAL+YF +AE+ P FYS+N+L+LGKTY++L
Sbjct: 210 CYTFAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKNLLLLGKTYLKLN 269
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLE 315
N + AA++L K YPA E K ++
Sbjct: 270 NKKLAAFWLVKAKGYPAHTEEDKQIQ 295
>sp|Q5EAU9|RMD3_XENLA Regulator of microtubule dynamics protein 3 OS=Xenopus laevis
GN=rmdn3 PE=2 SV=1
Length = 463
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 17 FLKKSDDLFE---EQQFEEV-----NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSD 68
L+KSD+L EQQ E NK+L Y + E +WRL R ++ T + D
Sbjct: 229 LLQKSDELHSGSTEQQREGFQLLLNNKLL----YGDHQEFLWRLARSYSDMCTIAE---D 281
Query: 69 ADKKQLILSAYFLVYNALPQHEDHYA-IHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127
A +K+ S A Q D A HKW A++ + + EG + RIQ K H+
Sbjct: 282 AQEKKSFASEGKEEAEAALQKGDQNAECHKWFAILCGQLSEHEGIQKRIQTGYLFKEHIE 341
Query: 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 187
KAI LKP D+ ++LG WC+E++++ W +RK A+A+++ PT++ EAL+ FL+AE
Sbjct: 342 KAISLKPGDARCYYLLGRWCYEVSNLGWLERKTASALYENPPTATVHEALQNFLKAEDLT 401
Query: 188 PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP--VKQDKDQCFEITDM 236
P F +++ K Y L N AA++L++ + P ++D++ I +M
Sbjct: 402 PGFSKAARVLIAKCYKDLGNNATAAHWLKLAADLPNVTQEDRESTTTIEEM 452
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+E++++ W +RK A+A+++ PT++ EAL+ FL+AE P F +++ K Y L
Sbjct: 361 CYEVSNLGWLERKTASALYENPPTATVHEALQNFLKAEDLTPGFSKAARVLIAKCYKDLG 420
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEK 316
N AA++L++ + P V +E+T +E+
Sbjct: 421 NNATAAHWLKLAADLPNVTQEDRESTTTIEE 451
>sp|Q66H15|RMD3_RAT Regulator of microtubule dynamics protein 3 OS=Rattus norvegicus
GN=Rmdn3 PE=2 SV=1
Length = 471
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 6/220 (2%)
Query: 17 FLKKSDDLFE--EQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKK 72
L+++D+L + EQ +E ++L +++ Y + +WRL R ++ + +++KK
Sbjct: 242 LLQQADELHQGSEQNKQEGFQLLLNNKLAYGSRQDFLWRLARAYSDMTELTEE--ESEKK 299
Query: 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL 132
L+ AL + ++ A H W AV+ + A EG RIQ + K H++KAIEL
Sbjct: 300 SYALNGKEEAEAALKKGDESAASHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIEL 359
Query: 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192
+P+D F+LG WC++++ + W ++K A A+F++ +++ ++AL+ FL+AE+ P F
Sbjct: 360 QPEDPRGHFLLGRWCYQVSHLSWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSK 419
Query: 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
+ + K Y L +A +L + + P ++D F+
Sbjct: 420 AGRVYISKCYRELGKNSEARKWLNLAQELPNITNEDSAFQ 459
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 45/78 (57%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C++++ + W ++K A A+F++ +++ ++AL+ FL+AE+ P F + + K Y L
Sbjct: 374 CYQVSHLSWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRVYISKCYRELG 433
Query: 290 NYEQAAYYLEMTKNYPAV 307
+A +L + + P +
Sbjct: 434 KNSEARKWLNLAQELPNI 451
>sp|Q3UJU9|RMD3_MOUSE Regulator of microtubule dynamics protein 3 OS=Mus musculus
GN=Rmdn3 PE=1 SV=2
Length = 470
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 104/191 (54%), Gaps = 2/191 (1%)
Query: 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101
Y + +WRL R +++ + ++ KK L+ AL + ++ A H W AV
Sbjct: 271 YGSRQDFLWRLARAYSDMSDLTEE--ESGKKSYALNGKEEAEAALKKGDESAACHLWYAV 328
Query: 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161
+ + A EG RIQ + K H++KAIEL+P+D F+LG WC++++ + W ++K A
Sbjct: 329 LCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPEDPRGHFLLGRWCYQVSHLNWLEKKTA 388
Query: 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221
A+F++ +++ ++AL+ FL+AE+ P F + + K Y L +A ++++ +
Sbjct: 389 TALFESPLSATVQDALQSFLKAEELQPGFSKAGRVYISKCYRELGKNSEARKWMKLAQEL 448
Query: 222 PVKQDKDQCFE 232
P ++D F+
Sbjct: 449 PDVTNEDSAFQ 459
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C++++ + W ++K A A+F++ +++ ++AL+ FL+AE+ P F + + K Y L
Sbjct: 374 CYQVSHLNWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRVYISKCYRELG 433
Query: 290 NYEQAAYYLEMTKNYPAV 307
+A ++++ + P V
Sbjct: 434 KNSEARKWMKLAQELPDV 451
>sp|Q0P4W3|RMD2_XENTR Regulator of microtubule dynamics protein 2 OS=Xenopus tropicalis
GN=rmdn2 PE=2 SV=1
Length = 412
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 36 MLESSE-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA 94
ML++ E Y VE +WRL R ++ +S + + KK + + A+ Q ED A
Sbjct: 205 MLDNKEKYGNKVEFLWRLARAYGDMFDMTSDVEE--KKNYAANGKSIAGKAI-QLEDCSA 261
Query: 95 -IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153
H+W A++ + E + +I+ K H++KAIEL P D ++LG WC+ ++ +
Sbjct: 262 ESHRWFAIMCGYLSEYESVQDKIKNGYLFKEHLDKAIELDPKDPLQYYLLGRWCYAVSQL 321
Query: 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213
W +RK+A A+F PT++ +EAL+ FL+ E+ HP + N + L K Y L A
Sbjct: 322 SWIERKVAAALFGNPPTATIQEALQNFLKVEEMHPGYSKYNYVFLAKCYKDLGQKSVALK 381
Query: 214 YLEMTKNYPV--KQDKD 228
Y + K+DKD
Sbjct: 382 YCDEASAMTAANKEDKD 398
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W +RK+A A+F PT++ +EAL+ FL+ E+ HP + N + L K Y L
Sbjct: 315 CYAVSQLSWIERKVAAALFGNPPTATIQEALQNFLKVEEMHPGYSKYNYVFLAKCYKDLG 374
Query: 290 NYEQAAYYLE 299
A Y +
Sbjct: 375 QKSVALKYCD 384
>sp|Q1JQC5|RMD3_BOVIN Regulator of microtubule dynamics protein 3 OS=Bos taurus GN=RMDN3
PE=2 SV=1
Length = 471
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 6/199 (3%)
Query: 34 NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93
NK++ S + +WRL R ++ + S+ K+ LS AL + ++
Sbjct: 267 NKLVHGSRQ----DFLWRLARAYSDMCELTEEASE--KRSYALSGKEEAEVALEKGNENA 320
Query: 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153
H+W AV+ + A EG + RIQ + K H++KAI LKP++ F+LG WC++++ +
Sbjct: 321 ECHQWYAVLCGQLAEHEGIQRRIQSGFSFKEHVDKAIALKPENPMAHFLLGRWCYQVSHL 380
Query: 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213
W ++K A A+ ++ ++ ++AL FL+AE+ P F + + K Y L +A
Sbjct: 381 SWLEKKTATALSESPLGATVQDALSSFLKAEELQPGFSKAGRIYICKCYKELGKNPEAKE 440
Query: 214 YLEMTKNYPVKQDKDQCFE 232
++++ P +D F+
Sbjct: 441 WMKLALELPNVTKEDSAFQ 459
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C++++ + W ++K A A+ ++ ++ ++AL FL+AE+ P F + + K Y L
Sbjct: 374 CYQVSHLSWLEKKTATALSESPLGATVQDALSSFLKAEELQPGFSKAGRIYICKCYKELG 433
Query: 290 NYEQAAYYLEMTKNYPAV 307
+A ++++ P V
Sbjct: 434 KNPEAKEWMKLALELPNV 451
>sp|Q5R6Z1|RMD3_PONAB Regulator of microtubule dynamics protein 3 OS=Pongo abelii
GN=RMDN3 PE=2 SV=1
Length = 470
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 108/207 (52%), Gaps = 8/207 (3%)
Query: 18 LKKSDDLFEEQQFEEV--NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLI 75
L + D+ + + F+ + NK++ Y + +WRL R ++ + +S+ KK
Sbjct: 248 LHRGDEQGKREGFQLLLNNKLV----YGSRQDFLWRLARAYSDMCELTEEVSE--KKSYA 301
Query: 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD 135
L AL + ++ H W AV+ + A E + RIQ + K H++KAI L+P+
Sbjct: 302 LDGKEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPE 361
Query: 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195
+ F+LG WC++++ + W ++K A A+ ++ +++ E+AL+ FL+AE+ P F
Sbjct: 362 NPMAYFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGR 421
Query: 196 LMLGKTYMRLENYEQAAYYLEMTKNYP 222
+ + K Y L +A +++++ P
Sbjct: 422 VYISKCYRELGKNSEARWWMKLALELP 448
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 49/87 (56%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C++++ + W ++K A A+ ++ +++ E+AL+ FL+AE+ P F + + K Y L
Sbjct: 373 CYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYISKCYRELG 432
Query: 290 NYEQAAYYLEMTKNYPAVQEATKLLEK 316
+A +++++ P V + L+K
Sbjct: 433 KNSEARWWMKLALELPDVTKEDLALQK 459
>sp|Q96TC7|RMD3_HUMAN Regulator of microtubule dynamics protein 3 OS=Homo sapiens
GN=RMDN3 PE=1 SV=2
Length = 470
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 108/207 (52%), Gaps = 8/207 (3%)
Query: 18 LKKSDDLFEEQQFEEV--NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLI 75
L + D+ + + F+ + NK++ Y + +WRL R ++ + +S+ KK
Sbjct: 248 LHRGDEQGKREGFQLLLNNKLV----YGSRQDFLWRLARAYSDMCELTEEVSE--KKSYA 301
Query: 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD 135
L AL + ++ H W AV+ + A E + RIQ + K H++KAI L+P+
Sbjct: 302 LDGKEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPE 361
Query: 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195
+ F+LG WC++++ + W ++K A A+ ++ +++ E+AL+ FL+AE+ P F
Sbjct: 362 NPMAHFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGR 421
Query: 196 LMLGKTYMRLENYEQAAYYLEMTKNYP 222
+ + K Y L +A +++++ P
Sbjct: 422 VYISKCYRELGKNSEARWWMKLALELP 448
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 45/78 (57%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C++++ + W ++K A A+ ++ +++ E+AL+ FL+AE+ P F + + K Y L
Sbjct: 373 CYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYISKCYRELG 432
Query: 290 NYEQAAYYLEMTKNYPAV 307
+A +++++ P V
Sbjct: 433 KNSEARWWMKLALELPDV 450
>sp|Q2TBQ7|RMD2_BOVIN Regulator of microtubule dynamics protein 2 OS=Bos taurus GN=RMDN2
PE=2 SV=2
Length = 410
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
Query: 17 FLKKSDDLF--EEQQFEEVNKMLESSE-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQ 73
++++D+L E ++ E + + E +++++E IWR R ++ S+++ + KK
Sbjct: 182 LIQRADNLRVNESRKVESFELLCDHKEKFRDEIEFIWRFARAYGDMYELSTNIQE--KKH 239
Query: 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK 133
L A+ + + H W AV+ + EG + +I K H++KAIE
Sbjct: 240 YANIGKTLGEKAIMRAPKNGYCHLWYAVLCGYVSEFEGLQNKINYGYRFKEHLDKAIEFL 299
Query: 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 193
P++ ++ G +C+ ++ + W +RK+A +F +P+S+ +EAL+ FL+ E+ P F
Sbjct: 300 PEEPFLYYLKGRYCYAVSKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKS 359
Query: 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPV--KQDKD 228
N + + K Y L + A + + P K+DKD
Sbjct: 360 NYMFMAKCYADLNQIDSAMKFCNLAVLLPCITKEDKD 396
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W +RK+A +F +P+S+ +EAL+ FL+ E+ P F N + + K Y L
Sbjct: 313 CYAVSKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKSNYMFMAKCYADLN 372
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEKAKSYLKK 323
+ A + + P + ++A K ++K + LK+
Sbjct: 373 QIDSAMKFCNLAVLLPCITKEDKDAQKEVKKISTSLKR 410
>sp|Q8BSE0|RMD2_MOUSE Regulator of microtubule dynamics protein 2 OS=Mus musculus
GN=Rmdn2 PE=2 SV=1
Length = 410
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 17 FLKKSDDLF--EEQQFEEVNKMLESSE-YKEDVEIIWRLVRV---KYNLATHSSSLSDAD 70
L+K+D L E + E + + E + E+ E +WRL R Y+L+T S +
Sbjct: 182 LLQKADHLRTNESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLST-----STQE 236
Query: 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI 130
KK L A+ + + H W AV+ + EG + +I K H+ AI
Sbjct: 237 KKHYANIGKTLGERAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAI 296
Query: 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190
+L P++ ++ G +C+ ++ + W ++K+A +F +P S+ EAL FL+ E+ P +
Sbjct: 297 QLLPEEPLLYYLKGRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGY 356
Query: 191 YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV--KQDKDQCFEITDM 236
N + K Y+ L ++A + + PV K+DKD E+ M
Sbjct: 357 SMSNYMYTAKCYVELGEPQEACKFCNLALLLPVVTKEDKDAHKEVKKM 404
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W ++K+A +F +P S+ EAL FL+ E+ P + N + K Y+ L
Sbjct: 313 CYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYVELG 372
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEKAKSYLKK 323
++A + + P V ++A K ++K S LK+
Sbjct: 373 EPQEACKFCNLALLLPVVTKEDKDAHKEVKKMISSLKR 410
>sp|Q498D5|RMD2_RAT Regulator of microtubule dynamics protein 2 OS=Rattus norvegicus
GN=Rmdn2 PE=2 SV=1
Length = 412
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 17 FLKKSDDLF--EEQQFEEVNKMLESSE-YKEDVEIIWRLVRV---KYNLATHSSSLSDAD 70
L+K D L E + E + + E + E++E +WRLVR Y+L+T++ +
Sbjct: 184 LLQKVDHLRLNEAHKMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQ-----E 238
Query: 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI 130
KK L A+ + + H W A++ + EG + +I K H++ AI
Sbjct: 239 KKHYANVGKTLGERAITRAPMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAI 298
Query: 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190
+L P++ ++ G +C+ ++ + W ++K+A +F +P+S+ EAL FL+ E+ P +
Sbjct: 299 QLLPEEPVLYYLKGRYCYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGY 358
Query: 191 YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV--KQDKD 228
N + + K Y+ L +A + + P+ K+DKD
Sbjct: 359 SVSNYMYVAKCYVDLGESREAWKFCNLALLLPIVTKEDKD 398
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W ++K+A +F +P+S+ EAL FL+ E+ P + N + + K Y+ L
Sbjct: 315 CYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLG 374
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEKAKSYLKK 323
+A + + P V ++A K ++K LK+
Sbjct: 375 ESREAWKFCNLALLLPIVTKEDKDAHKEVKKIIGSLKR 412
>sp|Q96LZ7|RMD2_HUMAN Regulator of microtubule dynamics protein 2 OS=Homo sapiens
GN=RMDN2 PE=1 SV=2
Length = 410
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 10/193 (5%)
Query: 41 EYKEDVEIIWRLVRV---KYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97
++++++E +WR R Y L+T++ +KK L A+ + + H
Sbjct: 209 KFRDEIEFMWRFARAYGDMYELSTNTQ-----EKKHYANIGKTLSERAINRAPMNGHCHL 263
Query: 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157
W AV+ + EG + +I K H++ AI+L P++ ++ G +C+ ++ + W +
Sbjct: 264 WYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRYCYTVSKLSWIE 323
Query: 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+K+A +F +P+S+ +EAL FL+AE+ P + + N + L K Y LE + A + +
Sbjct: 324 KKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLEENQNALKFCNL 383
Query: 218 TKNYP--VKQDKD 228
P K+DK+
Sbjct: 384 ALLLPTVTKEDKE 396
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W ++K+A +F +P+S+ +EAL FL+AE+ P + + N + L K Y LE
Sbjct: 313 CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLE 372
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEKAKSYLKK 323
+ A + + P V +EA K ++K + LK+
Sbjct: 373 ENQNALKFCNLALLLPTVTKEDKEAQKEMQKIMTSLKR 410
>sp|Q95LL7|RMD2_MACFA Regulator of microtubule dynamics protein 2 OS=Macaca fascicularis
GN=RMDN2 PE=2 SV=2
Length = 410
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 41 EYKEDVEIIWRLVRV---KYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97
++++ +E +WR R Y L+T++ +KK L A+ + + H
Sbjct: 209 KFRDKIEFMWRFARAYGDMYELSTNTQ-----EKKHYANIGRTLSERAINRAPMNGHCHL 263
Query: 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157
W AV+ + EG + +I K H++ AI+L P++ ++ G +C+ ++ + W +
Sbjct: 264 WYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRYCYTVSKLSWIE 323
Query: 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+K+A +F +P+S+ +EAL FL+AE+ P + + N + L K Y LE + A + +
Sbjct: 324 KKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYADLEENQNALKFCNL 383
Query: 218 TKNYP--VKQDKD 228
P K+DK+
Sbjct: 384 ALLLPTVTKEDKE 396
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
C+ ++ + W ++K+A +F +P+S+ +EAL FL+AE+ P + + N + L K Y LE
Sbjct: 313 CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYADLE 372
Query: 290 NYEQAAYYLEMTKNYPAV----QEATKLLEKAKSYLKK 323
+ A + + P V +EA K ++K + LK+
Sbjct: 373 ENQNALKFCNLALLLPTVTKEDKEAQKEMQKIMTSLKR 410
>sp|P34560|RMD1_CAEEL Regulator of microtubule dynamics protein 1 OS=Caenorhabditis
elegans GN=rmd-1 PE=1 SV=2
Length = 226
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 10/215 (4%)
Query: 21 SDDLFEEQQF----EEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76
SD LFE ++F EE+ K E E D ++WR+ R + L+T ++S ++++++
Sbjct: 7 SDKLFESREFVKGLEELKKRREDGEMTCD--LLWRMCRFCHELST---TMSGEQRRKMLI 61
Query: 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136
A+ + KW A++ TK +I +K ++KA+EL P D
Sbjct: 62 EGRDYGLEAMDLDPSSFLAAKWTAIMFGLVVDQLPTKEKINDGGRLKDMLDKALELDPTD 121
Query: 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196
L + + + I ++ W +RK A+ ++ +P ++ ++AL F A Q+ + +N+L
Sbjct: 122 FALLHLRARFSYTIANLSWLERKAASMLYSEVPKATIDDALVDFKAAYNQNA-DWIENLL 180
Query: 197 MLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231
L K ++ + +QA L P D F
Sbjct: 181 FLSKCHLAKKEKQQAREMLNKAIVLPAASSNDAQF 215
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290
+ I ++ W +RK A+ ++ +P ++ ++AL F A Q+ + +N+L L K ++ +
Sbjct: 133 YTIANLSWLERKAASMLYSEVPKATIDDALVDFKAAYNQNA-DWIENLLFLSKCHLAKKE 191
Query: 291 YEQAAYYLEMTKNYPAVQEA-TKLLEKAKSYLKK 323
+QA L PA + + + KS L+K
Sbjct: 192 KQQAREMLNKAIVLPAASSNDAQFVTECKSLLQK 225
>sp|A5UDF4|SYL_HAEIE Leucine--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=leuS PE=3 SV=1
Length = 861
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 99 LAVILNEKATLEGTKARIQ-QLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157
L +IL E ++G K+ I+ L K +N A LK D+ FM W + P YQ
Sbjct: 450 LPIILPEDVVMDGVKSPIKADLNWAKTTLNGAPALKETDTFDTFMESSWYYARYTCPQYQ 509
Query: 158 RKIANA 163
+ +A
Sbjct: 510 NGMLDA 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,072,429
Number of Sequences: 539616
Number of extensions: 4218538
Number of successful extensions: 15191
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15136
Number of HSP's gapped (non-prelim): 74
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)