Query psy11738
Match_columns 323
No_of_seqs 172 out of 1932
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 17:39:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 1.3E-28 2.8E-33 218.8 27.6 288 5-311 107-459 (966)
2 KOG4626|consensus 100.0 2.1E-29 4.6E-34 223.7 18.0 253 9-307 213-488 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 6.3E-25 1.4E-29 209.9 26.5 245 11-307 328-574 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 7.8E-24 1.7E-28 202.3 26.2 248 14-307 160-499 (615)
5 KOG1126|consensus 99.9 3.8E-24 8.3E-29 192.3 18.6 249 16-310 355-626 (638)
6 PRK15174 Vi polysaccharide exp 99.9 4E-21 8.8E-26 183.8 27.7 123 170-308 225-351 (656)
7 KOG1126|consensus 99.9 9.8E-22 2.1E-26 176.9 21.1 257 18-320 323-603 (638)
8 PRK15174 Vi polysaccharide exp 99.9 7.3E-21 1.6E-25 182.0 28.0 250 9-308 105-385 (656)
9 KOG0624|consensus 99.9 1.6E-20 3.5E-25 157.0 22.8 281 7-322 31-389 (504)
10 KOG0547|consensus 99.9 7.4E-21 1.6E-25 165.5 21.0 240 14-305 326-567 (606)
11 PRK11447 cellulose synthase su 99.9 5.9E-20 1.3E-24 186.6 31.1 261 19-307 274-669 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 8E-20 1.7E-24 181.6 29.7 271 10-307 563-869 (899)
13 PRK11788 tetratricopeptide rep 99.9 6.7E-20 1.4E-24 166.1 25.9 258 14-310 35-317 (389)
14 PRK12370 invasion protein regu 99.9 4E-20 8.7E-25 174.1 24.0 199 73-308 275-474 (553)
15 KOG0550|consensus 99.9 1.2E-20 2.7E-25 161.1 17.6 273 7-323 42-369 (486)
16 KOG0547|consensus 99.9 1E-19 2.2E-24 158.5 23.4 243 16-307 117-494 (606)
17 KOG1155|consensus 99.9 2.3E-19 5.1E-24 155.3 25.3 257 18-320 266-553 (559)
18 PRK12370 invasion protein regu 99.9 1E-19 2.2E-24 171.4 25.1 235 17-303 261-501 (553)
19 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-19 3.3E-24 179.6 26.2 273 9-309 528-837 (899)
20 PRK11189 lipoprotein NlpI; Pro 99.9 7.7E-20 1.7E-24 159.0 20.9 221 27-309 39-270 (296)
21 KOG1173|consensus 99.9 9.2E-20 2E-24 161.3 20.6 279 5-319 235-534 (611)
22 PRK09782 bacteriophage N4 rece 99.9 3.2E-19 6.9E-24 175.2 26.4 237 9-308 470-710 (987)
23 PRK11788 tetratricopeptide rep 99.8 9.5E-19 2.1E-23 158.6 26.6 227 46-309 35-283 (389)
24 PRK11447 cellulose synthase su 99.8 2.2E-19 4.7E-24 182.5 23.7 268 9-307 380-703 (1157)
25 PRK09782 bacteriophage N4 rece 99.8 5.8E-19 1.2E-23 173.4 24.8 233 17-309 512-745 (987)
26 KOG1125|consensus 99.8 1.3E-19 2.7E-24 161.1 17.8 241 15-307 286-530 (579)
27 KOG1155|consensus 99.8 1E-17 2.3E-22 145.2 22.9 235 21-304 234-495 (559)
28 TIGR02521 type_IV_pilW type IV 99.8 9.1E-18 2E-22 140.3 22.1 204 44-306 29-234 (234)
29 PRK10049 pgaA outer membrane p 99.8 5.7E-17 1.2E-21 158.3 28.1 272 9-308 44-426 (765)
30 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 153.1 30.1 281 9-318 78-470 (765)
31 KOG1173|consensus 99.8 4.7E-17 1E-21 144.3 21.1 222 42-307 240-487 (611)
32 PF13429 TPR_15: Tetratricopep 99.8 1.1E-18 2.4E-23 151.1 10.2 232 15-307 9-246 (280)
33 COG3063 PilF Tfp pilus assembl 99.8 9.4E-17 2E-21 128.0 19.6 207 46-311 35-243 (250)
34 KOG2076|consensus 99.8 5.2E-16 1.1E-20 144.3 27.0 278 7-310 132-484 (895)
35 TIGR02521 type_IV_pilW type IV 99.8 1.6E-16 3.4E-21 132.8 21.6 205 9-271 26-234 (234)
36 COG3063 PilF Tfp pilus assembl 99.7 5E-16 1.1E-20 123.9 19.5 170 93-306 35-204 (250)
37 KOG1174|consensus 99.7 3.1E-15 6.7E-20 128.4 25.3 272 8-318 190-515 (564)
38 PLN02789 farnesyltranstransfer 99.7 6.4E-16 1.4E-20 134.5 21.4 210 26-288 49-268 (320)
39 KOG2002|consensus 99.7 3.9E-16 8.4E-21 146.1 21.1 266 7-304 157-442 (1018)
40 KOG1129|consensus 99.7 2.2E-16 4.8E-21 131.7 16.9 232 18-307 227-461 (478)
41 PF13429 TPR_15: Tetratricopep 99.7 2.1E-17 4.6E-22 143.0 10.2 233 11-304 41-277 (280)
42 PRK11189 lipoprotein NlpI; Pro 99.7 2.1E-15 4.7E-20 131.1 21.9 219 11-287 61-283 (296)
43 TIGR00540 hemY_coli hemY prote 99.7 1.7E-14 3.7E-19 131.3 28.5 266 13-315 83-377 (409)
44 PLN02789 farnesyltranstransfer 99.7 1.5E-15 3.3E-20 132.2 19.6 194 75-307 53-253 (320)
45 KOG2003|consensus 99.7 5.4E-15 1.2E-19 128.4 20.7 251 11-307 416-692 (840)
46 PRK10747 putative protoheme IX 99.7 3.8E-14 8.3E-19 128.5 27.4 261 13-315 83-368 (398)
47 KOG1129|consensus 99.7 1.9E-16 4.1E-21 132.1 10.2 219 9-285 251-473 (478)
48 KOG2002|consensus 99.7 3.5E-15 7.6E-20 139.8 19.1 226 30-307 146-374 (1018)
49 TIGR03302 OM_YfiO outer membra 99.7 6.7E-15 1.4E-19 124.1 18.8 186 87-306 27-234 (235)
50 KOG0548|consensus 99.7 8.6E-14 1.9E-18 123.3 25.5 264 14-307 2-424 (539)
51 PRK15359 type III secretion sy 99.7 1.1E-15 2.4E-20 118.4 11.7 116 79-228 13-128 (144)
52 TIGR03302 OM_YfiO outer membra 99.7 1.2E-14 2.7E-19 122.5 18.4 198 8-223 27-234 (235)
53 KOG1840|consensus 99.6 1.6E-14 3.4E-19 131.5 18.9 253 8-303 193-478 (508)
54 TIGR00540 hemY_coli hemY prote 99.6 1.8E-13 3.8E-18 124.7 24.9 239 8-304 112-399 (409)
55 PRK10747 putative protoheme IX 99.6 2.6E-13 5.7E-18 123.0 24.2 229 14-305 118-391 (398)
56 PRK10370 formate-dependent nit 99.6 1.4E-14 3.1E-19 118.1 14.3 125 74-227 54-179 (198)
57 PRK15359 type III secretion sy 99.6 1.3E-14 2.8E-19 112.3 13.1 80 124-227 14-93 (144)
58 KOG4162|consensus 99.6 1.1E-12 2.4E-17 120.7 26.0 271 11-307 390-786 (799)
59 PRK10370 formate-dependent nit 99.6 4.7E-14 1E-18 115.1 15.5 129 171-314 53-184 (198)
60 KOG1125|consensus 99.6 4.8E-14 1E-18 125.9 15.7 190 71-307 297-496 (579)
61 KOG2003|consensus 99.6 1.1E-13 2.3E-18 120.5 16.9 219 13-290 489-709 (840)
62 KOG0550|consensus 99.6 4E-14 8.7E-19 121.6 14.1 223 71-307 61-319 (486)
63 KOG0624|consensus 99.6 2.7E-13 5.9E-18 114.1 18.4 184 88-306 33-220 (504)
64 COG2956 Predicted N-acetylgluc 99.6 3.9E-12 8.5E-17 106.4 24.4 245 14-316 35-290 (389)
65 TIGR02552 LcrH_SycD type III s 99.6 7.1E-14 1.5E-18 107.3 12.4 117 80-227 4-120 (135)
66 TIGR02552 LcrH_SycD type III s 99.6 1.3E-13 2.7E-18 105.9 13.8 128 124-321 4-132 (135)
67 cd05804 StaR_like StaR_like; a 99.5 2.7E-12 5.8E-17 115.0 23.2 210 42-306 2-217 (355)
68 PRK14574 hmsH outer membrane p 99.5 2.8E-12 6.1E-17 124.3 23.9 252 7-305 27-357 (822)
69 PRK15179 Vi polysaccharide bio 99.5 6.3E-13 1.4E-17 126.6 18.3 142 41-226 81-222 (694)
70 COG2956 Predicted N-acetylgluc 99.5 4.6E-12 1E-16 106.0 20.5 205 75-321 51-262 (389)
71 PRK15363 pathogenicity island 99.5 4E-13 8.7E-18 102.6 12.6 126 127-322 24-151 (157)
72 cd05804 StaR_like StaR_like; a 99.5 2.1E-11 4.6E-16 109.2 25.8 254 12-307 41-339 (355)
73 KOG1156|consensus 99.5 5.2E-12 1.1E-16 114.3 20.7 248 11-309 4-253 (700)
74 KOG1174|consensus 99.5 1.4E-11 3.1E-16 106.2 22.2 241 11-278 229-508 (564)
75 PRK15179 Vi polysaccharide bio 99.5 8E-12 1.7E-16 119.1 21.0 140 85-304 78-217 (694)
76 KOG2076|consensus 99.5 4.5E-11 9.8E-16 112.0 25.0 259 7-302 166-510 (895)
77 PRK14720 transcript cleavage f 99.5 3.2E-12 7E-17 122.9 17.0 224 18-308 6-256 (906)
78 COG5010 TadD Flp pilus assembl 99.5 3.1E-11 6.8E-16 98.6 20.2 182 76-304 50-231 (257)
79 KOG0495|consensus 99.4 7.4E-11 1.6E-15 107.1 24.0 255 18-307 588-883 (913)
80 KOG1840|consensus 99.4 4.5E-12 9.8E-17 115.6 16.1 214 42-305 195-439 (508)
81 PRK14574 hmsH outer membrane p 99.4 2E-11 4.3E-16 118.5 21.5 202 41-304 29-232 (822)
82 PRK15363 pathogenicity island 99.4 2.8E-12 6.2E-17 98.0 11.7 108 84-222 25-133 (157)
83 KOG0548|consensus 99.4 3.5E-11 7.6E-16 107.0 19.6 50 14-64 224-275 (539)
84 PRK14720 transcript cleavage f 99.4 5.4E-11 1.2E-15 114.6 22.2 233 7-287 24-269 (906)
85 KOG0553|consensus 99.4 3.7E-12 8E-17 105.9 11.6 120 11-153 78-199 (304)
86 KOG0553|consensus 99.4 6.4E-12 1.4E-16 104.5 12.3 109 70-209 92-200 (304)
87 COG5010 TadD Flp pilus assembl 99.4 1.1E-10 2.4E-15 95.4 17.8 150 33-227 53-203 (257)
88 PF12569 NARP1: NMDA receptor- 99.4 1.1E-09 2.3E-14 101.2 26.0 243 14-304 4-334 (517)
89 KOG1127|consensus 99.3 1.8E-10 3.8E-15 109.0 19.6 207 73-304 472-700 (1238)
90 KOG3060|consensus 99.3 4.5E-10 9.7E-15 91.3 19.0 170 74-286 67-236 (289)
91 KOG4162|consensus 99.3 1.6E-09 3.5E-14 100.2 25.0 134 72-225 407-546 (799)
92 KOG3060|consensus 99.3 1.9E-10 4.1E-15 93.4 16.6 160 24-227 62-226 (289)
93 PRK11906 transcriptional regul 99.3 1.5E-10 3.2E-15 102.7 17.3 162 74-270 273-437 (458)
94 KOG0495|consensus 99.3 2.6E-09 5.7E-14 97.3 24.6 257 12-307 514-785 (913)
95 PRK10153 DNA-binding transcrip 99.3 1.8E-10 4E-15 106.8 17.5 155 41-227 332-488 (517)
96 KOG1156|consensus 99.3 3.7E-09 8.1E-14 96.2 23.7 274 9-307 36-437 (700)
97 PLN03088 SGT1, suppressor of 99.3 7.1E-11 1.5E-15 105.2 12.3 113 15-150 3-117 (356)
98 PLN03218 maturation of RBCL 1; 99.3 1E-08 2.2E-13 102.6 28.6 258 17-304 475-783 (1060)
99 PLN03088 SGT1, suppressor of 99.3 8.4E-11 1.8E-15 104.8 12.8 102 74-206 17-118 (356)
100 PF13414 TPR_11: TPR repeat; P 99.2 2.4E-11 5.1E-16 81.6 6.1 68 135-223 1-69 (69)
101 KOG1130|consensus 99.2 1.5E-11 3.2E-16 106.1 5.5 262 15-305 18-305 (639)
102 PRK02603 photosystem I assembl 99.2 4.2E-10 9.1E-15 90.0 13.4 121 88-273 30-153 (172)
103 COG4235 Cytochrome c biogenesi 99.2 6.1E-10 1.3E-14 93.4 14.6 126 75-228 138-263 (287)
104 KOG1127|consensus 99.2 1.3E-09 2.7E-14 103.4 17.7 157 121-311 476-632 (1238)
105 COG4235 Cytochrome c biogenesi 99.2 1.2E-09 2.6E-14 91.6 15.7 135 172-319 137-272 (287)
106 KOG1128|consensus 99.2 1.2E-09 2.6E-14 100.6 17.0 121 171-307 499-619 (777)
107 COG4783 Putative Zn-dependent 99.2 9.2E-09 2E-13 91.1 21.8 107 90-227 303-409 (484)
108 PRK11906 transcriptional regul 99.2 1.7E-09 3.8E-14 96.0 17.2 202 85-319 240-451 (458)
109 COG4783 Putative Zn-dependent 99.2 3.3E-08 7.1E-13 87.6 24.5 154 132-321 301-455 (484)
110 PLN03218 maturation of RBCL 1; 99.2 5.7E-08 1.2E-12 97.3 29.1 268 14-310 437-756 (1060)
111 PLN03081 pentatricopeptide (PP 99.1 1.3E-08 2.8E-13 99.3 23.3 248 20-304 265-557 (697)
112 COG4785 NlpI Lipoprotein NlpI, 99.1 2.5E-09 5.4E-14 85.1 14.1 183 72-306 78-268 (297)
113 CHL00033 ycf3 photosystem I as 99.1 3.1E-09 6.7E-14 84.7 14.8 101 76-207 16-121 (168)
114 cd00189 TPR Tetratricopeptide 99.1 1.3E-09 2.8E-14 76.9 11.5 99 95-224 2-100 (100)
115 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.2E-09 2.5E-14 81.5 11.3 105 93-227 2-111 (119)
116 PF06552 TOM20_plant: Plant sp 99.1 2.9E-09 6.3E-14 82.6 13.3 112 70-190 2-113 (186)
117 PLN03081 pentatricopeptide (PP 99.1 1.9E-08 4E-13 98.2 22.4 175 17-221 227-420 (697)
118 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.8E-14 80.0 12.5 91 174-310 19-111 (119)
119 PRK10866 outer membrane biogen 99.1 2E-08 4.4E-13 84.5 19.2 177 91-300 30-237 (243)
120 PF13414 TPR_11: TPR repeat; P 99.1 2.9E-10 6.3E-15 76.3 6.5 68 91-188 1-69 (69)
121 CHL00033 ycf3 photosystem I as 99.1 1.6E-09 3.5E-14 86.3 11.7 138 21-191 6-154 (168)
122 KOG2376|consensus 99.1 5.7E-08 1.2E-12 87.8 22.2 234 12-311 10-260 (652)
123 COG3071 HemY Uncharacterized e 99.1 4.6E-07 1E-11 78.5 26.5 259 17-316 87-369 (400)
124 KOG1130|consensus 99.1 4.5E-11 9.8E-16 103.2 1.7 245 17-304 58-344 (639)
125 PRK15331 chaperone protein Sic 99.0 4.8E-09 1E-13 80.7 11.5 123 126-321 26-148 (165)
126 PF06552 TOM20_plant: Plant sp 99.0 5.6E-09 1.2E-13 81.1 11.6 114 30-146 7-123 (186)
127 PF12895 Apc3: Anaphase-promot 99.0 1.3E-09 2.7E-14 76.2 7.0 81 171-301 3-84 (84)
128 PRK10866 outer membrane biogen 99.0 4.8E-08 1E-12 82.3 17.7 187 12-217 30-237 (243)
129 PF12895 Apc3: Anaphase-promot 99.0 7.3E-10 1.6E-14 77.4 5.4 78 119-218 5-84 (84)
130 cd00189 TPR Tetratricopeptide 99.0 7.9E-09 1.7E-13 72.8 10.9 99 48-189 2-100 (100)
131 PF13525 YfiO: Outer membrane 99.0 8.8E-08 1.9E-12 78.7 18.4 182 12-212 3-198 (203)
132 KOG4340|consensus 99.0 1.2E-07 2.6E-12 79.2 18.9 179 20-222 16-208 (459)
133 PRK10153 DNA-binding transcrip 99.0 4.4E-08 9.5E-13 91.1 18.0 142 13-190 338-486 (517)
134 PRK02603 photosystem I assembl 99.0 1E-08 2.2E-13 82.0 11.9 120 42-190 31-153 (172)
135 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.9E-14 72.0 5.6 53 172-225 12-64 (65)
136 PLN03077 Protein ECB2; Provisi 99.0 1.9E-07 4.2E-12 93.3 23.2 179 71-303 536-719 (857)
137 KOG1128|consensus 99.0 2.9E-08 6.2E-13 91.7 15.5 205 11-271 395-618 (777)
138 PF13525 YfiO: Outer membrane 98.9 1E-07 2.2E-12 78.3 17.2 171 92-295 4-198 (203)
139 PF12569 NARP1: NMDA receptor- 98.9 1.8E-06 4E-11 80.0 26.6 223 12-270 36-335 (517)
140 PLN03077 Protein ECB2; Provisi 98.9 6.7E-07 1.4E-11 89.5 24.9 237 22-307 397-656 (857)
141 PRK15331 chaperone protein Sic 98.9 1.8E-08 3.8E-13 77.6 10.1 109 82-221 26-134 (165)
142 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 81.7 16.6 123 173-311 147-272 (290)
143 PRK10803 tol-pal system protei 98.9 4.1E-08 8.9E-13 83.3 13.3 95 171-311 157-253 (263)
144 PF09976 TPR_21: Tetratricopep 98.8 1.2E-07 2.6E-12 73.5 13.4 118 172-302 26-145 (145)
145 PF04733 Coatomer_E: Coatomer 98.8 1.4E-07 3.1E-12 81.4 15.1 161 18-225 106-269 (290)
146 KOG3785|consensus 98.8 3.1E-07 6.6E-12 78.5 16.4 249 20-300 28-310 (557)
147 PF14938 SNAP: Soluble NSF att 98.8 2.1E-07 4.5E-12 80.6 15.9 83 121-222 92-185 (282)
148 COG3071 HemY Uncharacterized e 98.8 3.8E-06 8.3E-11 72.9 22.9 255 7-304 111-390 (400)
149 PRK10803 tol-pal system protei 98.8 5.9E-08 1.3E-12 82.4 11.9 104 94-227 143-252 (263)
150 PF13432 TPR_16: Tetratricopep 98.8 1.5E-08 3.3E-13 66.9 6.5 63 98-190 2-64 (65)
151 KOG0543|consensus 98.8 5.9E-08 1.3E-12 84.5 11.5 99 94-223 258-357 (397)
152 KOG4648|consensus 98.8 1.4E-08 3E-13 86.2 7.4 237 15-310 98-336 (536)
153 PF09976 TPR_21: Tetratricopep 98.8 1.3E-07 2.9E-12 73.3 11.5 113 75-219 27-145 (145)
154 KOG1915|consensus 98.8 3E-05 6.5E-10 69.0 27.0 220 69-306 254-502 (677)
155 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.5E-07 3.2E-12 84.1 12.9 116 72-221 182-297 (395)
156 KOG0543|consensus 98.7 1.2E-07 2.6E-12 82.6 11.2 112 195-311 211-327 (397)
157 COG0457 NrfG FOG: TPR repeat [ 98.7 3E-05 6.4E-10 63.6 25.1 223 27-307 36-268 (291)
158 KOG3081|consensus 98.7 7.2E-06 1.6E-10 67.7 20.1 233 1-307 1-239 (299)
159 KOG1941|consensus 98.7 1.1E-06 2.3E-11 75.4 15.7 249 12-305 4-276 (518)
160 KOG4340|consensus 98.7 1.6E-06 3.6E-11 72.5 15.1 185 72-304 23-207 (459)
161 KOG4234|consensus 98.6 3.6E-07 7.8E-12 72.0 10.2 104 195-308 98-201 (271)
162 KOG2376|consensus 98.6 1.7E-06 3.7E-11 78.5 15.3 172 72-301 25-201 (652)
163 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.4E-07 3E-12 84.0 8.3 70 131-221 69-141 (453)
164 PF14559 TPR_19: Tetratricopep 98.6 1.9E-07 4.1E-12 62.2 7.2 62 253-315 4-66 (68)
165 COG0457 NrfG FOG: TPR repeat [ 98.6 1.6E-05 3.4E-10 65.3 20.3 189 74-307 38-234 (291)
166 PRK04841 transcriptional regul 98.6 1.2E-05 2.7E-10 81.0 21.9 195 74-304 424-641 (903)
167 KOG3785|consensus 98.6 5.1E-06 1.1E-10 71.2 15.8 188 73-314 36-224 (557)
168 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.3E-06 2.9E-11 78.0 13.1 118 171-307 183-300 (395)
169 PF14559 TPR_19: Tetratricopep 98.6 9.1E-08 2E-12 63.7 4.4 64 72-145 4-67 (68)
170 PF14938 SNAP: Soluble NSF att 98.6 2.3E-07 5E-12 80.3 8.0 214 12-272 32-269 (282)
171 PF12688 TPR_5: Tetratrico pep 98.6 1.6E-06 3.5E-11 64.3 11.3 97 93-220 1-103 (120)
172 KOG1915|consensus 98.6 0.00054 1.2E-08 61.3 28.7 127 178-310 309-439 (677)
173 PF12688 TPR_5: Tetratrico pep 98.5 2.7E-06 5.9E-11 63.0 11.7 99 193-303 2-103 (120)
174 PF13371 TPR_9: Tetratricopept 98.5 3E-07 6.6E-12 62.1 6.1 57 171-228 9-65 (73)
175 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.1E-12 64.6 4.3 71 192-304 5-75 (78)
176 PF13424 TPR_12: Tetratricopep 98.5 7.7E-08 1.7E-12 66.0 2.4 68 134-221 2-75 (78)
177 PF13371 TPR_9: Tetratricopept 98.4 8.1E-07 1.8E-11 60.0 6.9 68 101-199 3-70 (73)
178 COG4785 NlpI Lipoprotein NlpI, 98.4 1.2E-05 2.6E-10 64.5 13.9 106 92-228 64-169 (297)
179 PRK04841 transcriptional regul 98.4 7.3E-05 1.6E-09 75.5 23.4 237 18-307 495-763 (903)
180 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.5E-06 3.2E-11 77.5 9.0 71 87-187 69-142 (453)
181 COG4105 ComL DNA uptake lipopr 98.4 0.00012 2.7E-09 60.6 19.4 178 9-222 29-233 (254)
182 PF13512 TPR_18: Tetratricopep 98.4 8.8E-06 1.9E-10 61.5 11.5 108 192-311 10-135 (142)
183 KOG4648|consensus 98.4 1.1E-06 2.3E-11 75.0 6.7 178 97-307 101-299 (536)
184 KOG4234|consensus 98.3 6.2E-06 1.3E-10 65.2 9.9 118 11-146 92-211 (271)
185 COG1729 Uncharacterized protei 98.3 1.4E-05 3.1E-10 66.6 12.7 97 172-314 156-254 (262)
186 PF13512 TPR_18: Tetratricopep 98.3 9.5E-06 2.1E-10 61.3 10.4 118 9-139 5-135 (142)
187 COG1729 Uncharacterized protei 98.3 1.2E-05 2.5E-10 67.1 11.6 103 96-228 144-251 (262)
188 PF13431 TPR_17: Tetratricopep 98.3 8.1E-07 1.7E-11 50.0 2.9 34 179-213 1-34 (34)
189 KOG4642|consensus 98.2 8.3E-06 1.8E-10 66.2 9.2 56 171-227 24-79 (284)
190 KOG4642|consensus 98.2 4.4E-06 9.5E-11 67.8 6.5 83 121-224 28-110 (284)
191 COG4105 ComL DNA uptake lipopr 98.1 0.00022 4.7E-09 59.1 15.3 145 137-309 34-201 (254)
192 KOG4555|consensus 98.1 8.1E-05 1.8E-09 54.9 10.4 94 98-221 48-144 (175)
193 KOG1941|consensus 98.0 0.00043 9.3E-09 59.9 15.9 237 26-313 55-329 (518)
194 PF00515 TPR_1: Tetratricopept 98.0 5.3E-06 1.1E-10 46.8 2.9 33 193-225 2-34 (34)
195 PF00515 TPR_1: Tetratricopept 98.0 6.7E-06 1.5E-10 46.3 3.3 33 276-308 2-34 (34)
196 COG3898 Uncharacterized membra 98.0 0.0079 1.7E-07 52.8 23.1 241 18-315 124-369 (531)
197 KOG4555|consensus 98.0 0.00017 3.6E-09 53.3 11.0 90 172-272 58-147 (175)
198 PF07719 TPR_2: Tetratricopept 98.0 8.5E-06 1.8E-10 45.8 3.6 33 193-225 2-34 (34)
199 PF13431 TPR_17: Tetratricopep 98.0 7.7E-06 1.7E-10 46.0 3.2 32 263-295 2-33 (34)
200 COG4700 Uncharacterized protei 98.0 0.00053 1.2E-08 53.9 14.3 122 174-310 73-195 (251)
201 KOG2047|consensus 97.9 0.002 4.4E-08 59.7 19.3 245 17-307 428-691 (835)
202 KOG2053|consensus 97.9 0.0079 1.7E-07 57.9 23.7 235 16-308 11-259 (932)
203 PF13428 TPR_14: Tetratricopep 97.9 2.6E-05 5.6E-10 46.8 4.5 43 137-200 1-43 (44)
204 PF07719 TPR_2: Tetratricopept 97.9 1.4E-05 2.9E-10 45.0 3.0 33 276-308 2-34 (34)
205 PF13428 TPR_14: Tetratricopep 97.9 2E-05 4.4E-10 47.3 4.0 43 93-145 1-43 (44)
206 KOG0376|consensus 97.9 1.7E-05 3.7E-10 70.8 4.7 99 72-201 17-115 (476)
207 KOG0545|consensus 97.9 0.00011 2.4E-09 60.1 9.0 109 15-190 179-297 (329)
208 KOG1070|consensus 97.9 0.0081 1.8E-07 60.5 23.2 190 74-304 1473-1663(1710)
209 PF10300 DUF3808: Protein of u 97.9 0.0011 2.4E-08 61.5 16.8 124 171-305 247-377 (468)
210 KOG3081|consensus 97.8 0.01 2.2E-07 49.5 20.1 126 72-226 150-276 (299)
211 KOG2053|consensus 97.8 0.018 3.8E-07 55.6 24.1 172 11-217 40-215 (932)
212 KOG2610|consensus 97.8 0.00073 1.6E-08 58.0 13.0 159 18-219 107-274 (491)
213 COG4700 Uncharacterized protei 97.8 0.0036 7.7E-08 49.4 15.7 127 47-218 90-219 (251)
214 PF13281 DUF4071: Domain of un 97.8 0.0046 1E-07 54.9 18.3 114 74-210 156-277 (374)
215 KOG2796|consensus 97.8 0.00036 7.8E-09 57.8 10.2 130 171-309 191-320 (366)
216 KOG2047|consensus 97.7 0.017 3.7E-07 53.9 21.7 174 18-224 252-457 (835)
217 KOG1070|consensus 97.7 0.0082 1.8E-07 60.5 20.6 207 10-271 1454-1665(1710)
218 KOG3617|consensus 97.7 0.0023 4.9E-08 61.1 15.6 222 24-303 738-995 (1416)
219 PF13181 TPR_8: Tetratricopept 97.6 6.5E-05 1.4E-09 42.1 2.9 32 193-224 2-33 (34)
220 KOG0376|consensus 97.6 6.2E-05 1.3E-09 67.3 4.1 89 119-228 20-108 (476)
221 KOG0530|consensus 97.6 0.0062 1.3E-07 50.6 14.9 175 76-289 60-236 (318)
222 KOG0551|consensus 97.6 0.00087 1.9E-08 57.3 10.3 114 185-309 74-187 (390)
223 KOG3617|consensus 97.6 0.0076 1.6E-07 57.7 17.3 116 72-220 839-995 (1416)
224 COG2976 Uncharacterized protei 97.5 0.0014 3E-08 52.0 10.4 110 193-315 90-199 (207)
225 KOG2796|consensus 97.5 0.0033 7.1E-08 52.3 12.7 124 74-228 192-322 (366)
226 PF13181 TPR_8: Tetratricopept 97.5 8.4E-05 1.8E-09 41.7 2.6 32 276-307 2-33 (34)
227 KOG0551|consensus 97.5 0.0011 2.4E-08 56.8 10.1 90 8-110 75-170 (390)
228 KOG1586|consensus 97.5 0.0082 1.8E-07 49.1 14.4 126 174-307 90-227 (288)
229 KOG2471|consensus 97.5 0.0056 1.2E-07 55.2 14.6 117 11-150 237-382 (696)
230 PF03704 BTAD: Bacterial trans 97.5 0.013 2.9E-07 45.1 15.1 112 198-316 12-144 (146)
231 PF04184 ST7: ST7 protein; In 97.4 0.0026 5.7E-08 57.5 11.9 149 123-307 188-378 (539)
232 PF04781 DUF627: Protein of un 97.4 0.0027 5.8E-08 45.7 9.5 101 20-132 2-107 (111)
233 KOG2610|consensus 97.3 0.0064 1.4E-07 52.4 12.8 47 171-218 189-235 (491)
234 PF10300 DUF3808: Protein of u 97.3 0.0027 5.9E-08 58.9 11.6 119 74-222 248-377 (468)
235 COG3118 Thioredoxin domain-con 97.3 0.0046 9.9E-08 52.4 11.7 122 169-307 146-268 (304)
236 COG3118 Thioredoxin domain-con 97.3 0.017 3.6E-07 49.1 14.8 156 13-216 133-296 (304)
237 PF09986 DUF2225: Uncharacteri 97.3 0.0069 1.5E-07 49.9 12.6 108 171-319 91-209 (214)
238 KOG0545|consensus 97.3 0.0023 4.9E-08 52.6 9.3 112 193-309 179-298 (329)
239 PF05843 Suf: Suppressor of fo 97.3 0.0052 1.1E-07 53.1 12.2 127 71-226 13-141 (280)
240 PF04184 ST7: ST7 protein; In 97.3 0.0091 2E-07 54.2 13.8 189 71-302 180-412 (539)
241 PF08631 SPO22: Meiosis protei 97.3 0.057 1.2E-06 46.6 18.3 151 25-188 4-173 (278)
242 PF05843 Suf: Suppressor of fo 97.3 0.012 2.5E-07 51.0 14.0 124 119-273 17-140 (280)
243 KOG1550|consensus 97.3 0.037 8E-07 52.7 18.5 131 136-300 287-422 (552)
244 PF13281 DUF4071: Domain of un 97.3 0.12 2.6E-06 46.1 20.3 173 95-307 143-337 (374)
245 KOG1308|consensus 97.3 0.00024 5.3E-09 60.9 3.3 87 73-189 128-214 (377)
246 PF13176 TPR_7: Tetratricopept 97.2 0.00021 4.7E-09 40.7 1.7 30 277-306 1-30 (36)
247 KOG1586|consensus 97.1 0.072 1.6E-06 43.8 16.1 95 172-273 129-228 (288)
248 PF08424 NRDE-2: NRDE-2, neces 97.1 0.063 1.4E-06 47.4 17.5 153 41-222 14-184 (321)
249 PF13176 TPR_7: Tetratricopept 97.1 0.00099 2.1E-08 37.9 4.0 28 194-221 1-28 (36)
250 KOG1585|consensus 97.1 0.03 6.6E-07 46.2 13.7 175 18-228 35-226 (308)
251 KOG1308|consensus 97.1 0.00033 7.1E-09 60.1 2.6 54 171-225 128-181 (377)
252 PF13174 TPR_6: Tetratricopept 97.1 0.00058 1.3E-08 37.8 2.9 33 193-225 1-33 (33)
253 KOG1550|consensus 97.1 0.045 9.9E-07 52.1 16.8 153 27-217 262-422 (552)
254 COG3898 Uncharacterized membra 97.0 0.21 4.6E-06 44.2 19.4 128 171-310 168-298 (531)
255 COG0790 FOG: TPR repeat, SEL1 97.0 0.19 4.1E-06 43.6 20.8 164 25-221 52-220 (292)
256 KOG1585|consensus 97.0 0.055 1.2E-06 44.8 14.2 170 95-307 33-222 (308)
257 COG0790 FOG: TPR repeat, SEL1 96.9 0.11 2.3E-06 45.2 17.0 161 27-221 90-266 (292)
258 smart00028 TPR Tetratricopepti 96.9 0.0021 4.5E-08 34.6 4.1 32 193-224 2-33 (34)
259 PF04910 Tcf25: Transcriptiona 96.8 0.094 2E-06 47.0 15.7 166 26-225 22-226 (360)
260 PF13174 TPR_6: Tetratricopept 96.8 0.0012 2.5E-08 36.5 2.4 31 277-307 2-32 (33)
261 PF04910 Tcf25: Transcriptiona 96.7 0.21 4.4E-06 44.8 17.1 98 193-307 104-225 (360)
262 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0058 1.3E-07 38.0 4.8 40 276-315 2-41 (53)
263 smart00028 TPR Tetratricopepti 96.6 0.0039 8.5E-08 33.4 3.7 32 276-307 2-33 (34)
264 PF03704 BTAD: Bacterial trans 96.6 0.067 1.5E-06 41.1 11.7 50 170-220 75-124 (146)
265 KOG3824|consensus 96.5 0.0041 8.9E-08 52.8 4.6 66 71-146 128-193 (472)
266 KOG2471|consensus 96.5 0.015 3.2E-07 52.6 8.2 145 18-206 210-383 (696)
267 PF02259 FAT: FAT domain; Int 96.5 0.1 2.2E-06 46.5 14.0 159 10-190 142-342 (352)
268 PF02259 FAT: FAT domain; Int 96.4 0.61 1.3E-05 41.4 22.7 153 133-307 142-341 (352)
269 PF08424 NRDE-2: NRDE-2, neces 96.3 0.24 5.3E-06 43.7 15.1 121 80-221 6-131 (321)
270 KOG3364|consensus 96.1 0.065 1.4E-06 40.0 8.4 77 136-229 31-108 (149)
271 PF09986 DUF2225: Uncharacteri 96.1 0.11 2.5E-06 42.7 11.0 74 138-224 119-197 (214)
272 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.01 2.2E-07 36.9 3.5 36 193-228 2-37 (53)
273 PF14561 TPR_20: Tetratricopep 96.0 0.073 1.6E-06 37.3 8.3 74 124-217 9-83 (90)
274 KOG4507|consensus 95.9 0.054 1.2E-06 50.2 9.0 96 72-198 620-716 (886)
275 KOG3364|consensus 95.9 0.057 1.2E-06 40.3 7.3 66 245-310 40-106 (149)
276 KOG4507|consensus 95.9 0.033 7.2E-07 51.5 7.4 90 117-227 621-711 (886)
277 KOG3824|consensus 95.8 0.028 6E-07 48.0 6.3 61 120-201 133-193 (472)
278 KOG0529|consensus 95.8 0.79 1.7E-05 41.0 15.4 176 76-280 46-234 (421)
279 PF10602 RPN7: 26S proteasome 95.8 0.065 1.4E-06 42.8 8.1 98 193-303 37-141 (177)
280 KOG1310|consensus 95.8 0.065 1.4E-06 49.1 8.7 106 11-136 371-478 (758)
281 PF04781 DUF627: Protein of un 95.8 0.3 6.5E-06 35.3 10.5 91 121-222 14-108 (111)
282 PF08631 SPO22: Meiosis protei 95.7 0.59 1.3E-05 40.3 14.3 147 171-319 7-167 (278)
283 COG4976 Predicted methyltransf 95.7 0.028 6.1E-07 45.9 5.6 58 170-228 8-65 (287)
284 PF14561 TPR_20: Tetratricopep 95.5 0.12 2.7E-06 36.1 7.8 48 259-307 7-54 (90)
285 PF12968 DUF3856: Domain of Un 95.5 0.67 1.5E-05 34.0 11.5 93 171-304 23-129 (144)
286 KOG1914|consensus 95.4 1.6 3.5E-05 40.5 16.1 201 81-312 267-473 (656)
287 PRK10941 hypothetical protein; 95.2 0.094 2E-06 44.8 7.7 66 253-319 194-259 (269)
288 KOG2396|consensus 95.2 0.17 3.7E-06 46.2 9.3 88 77-194 89-176 (568)
289 PF13374 TPR_10: Tetratricopep 95.2 0.046 9.9E-07 31.6 4.2 30 192-221 2-31 (42)
290 KOG0985|consensus 95.0 4.5 9.9E-05 40.7 19.8 30 275-304 1220-1249(1666)
291 PF12968 DUF3856: Domain of Un 95.0 0.6 1.3E-05 34.2 9.8 110 50-186 4-129 (144)
292 TIGR03504 FimV_Cterm FimV C-te 94.9 0.092 2E-06 31.1 4.8 41 278-322 2-42 (44)
293 KOG3616|consensus 94.9 0.4 8.7E-06 46.0 11.2 35 270-304 877-911 (1636)
294 PF13374 TPR_10: Tetratricopep 94.9 0.029 6.4E-07 32.5 2.7 30 275-304 2-31 (42)
295 KOG2300|consensus 94.7 1.6 3.5E-05 40.0 14.0 202 71-303 287-513 (629)
296 KOG3616|consensus 94.6 3.4 7.4E-05 40.0 16.3 47 172-218 676-732 (1636)
297 PF09613 HrpB1_HrpK: Bacterial 94.4 0.65 1.4E-05 36.1 9.6 68 121-209 28-95 (160)
298 COG4976 Predicted methyltransf 94.4 0.091 2E-06 43.1 5.1 57 253-310 8-64 (287)
299 PF12862 Apc5: Anaphase-promot 94.2 0.15 3.3E-06 36.0 5.6 68 253-320 11-86 (94)
300 PF10602 RPN7: 26S proteasome 94.2 0.4 8.7E-06 38.3 8.5 105 138-270 37-143 (177)
301 COG2976 Uncharacterized protei 94.1 1.1 2.5E-05 35.9 10.6 84 120-225 106-192 (207)
302 PF10373 EST1_DNA_bind: Est1 D 94.1 0.23 5E-06 42.6 7.6 57 259-316 1-58 (278)
303 COG4649 Uncharacterized protei 93.9 2.6 5.7E-05 33.3 13.5 119 174-303 75-195 (221)
304 PF07079 DUF1347: Protein of u 93.9 3.3 7.2E-05 37.7 14.1 45 171-217 476-520 (549)
305 COG3914 Spy Predicted O-linked 93.8 0.94 2E-05 42.4 11.0 120 78-227 50-177 (620)
306 PRK13184 pknD serine/threonine 93.8 1.5 3.2E-05 44.2 13.2 119 17-152 478-601 (932)
307 KOG2300|consensus 93.7 1.9 4E-05 39.6 12.4 171 27-229 336-522 (629)
308 PF09613 HrpB1_HrpK: Bacterial 93.7 2.6 5.6E-05 32.8 12.5 109 13-146 9-119 (160)
309 PF07721 TPR_4: Tetratricopept 93.5 0.14 3E-06 26.5 3.2 24 193-216 2-25 (26)
310 KOG1310|consensus 93.4 0.36 7.9E-06 44.4 7.6 88 121-226 392-479 (758)
311 PF07721 TPR_4: Tetratricopept 93.4 0.14 3E-06 26.5 3.1 25 276-300 2-26 (26)
312 KOG1258|consensus 93.2 7.5 0.00016 36.6 17.5 174 70-285 308-485 (577)
313 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.12 2.6E-06 29.6 2.7 30 276-305 2-31 (38)
314 PRK10941 hypothetical protein; 92.9 1.2 2.6E-05 38.2 9.7 58 172-230 196-253 (269)
315 KOG2422|consensus 92.7 7.7 0.00017 36.5 14.9 147 133-307 280-451 (665)
316 KOG1839|consensus 92.7 0.49 1.1E-05 48.1 8.0 174 12-221 930-1128(1236)
317 KOG3783|consensus 92.6 8.8 0.00019 35.8 18.3 82 187-310 444-526 (546)
318 KOG0890|consensus 92.4 21 0.00044 39.6 23.0 52 253-307 1683-1735(2382)
319 PF12862 Apc5: Anaphase-promot 92.3 0.3 6.6E-06 34.4 4.6 58 171-228 12-77 (94)
320 KOG2396|consensus 92.3 1.6 3.4E-05 40.2 9.9 89 121-230 89-178 (568)
321 PF07720 TPR_3: Tetratricopept 91.5 0.4 8.6E-06 27.1 3.5 32 193-224 2-35 (36)
322 PF15015 NYD-SP12_N: Spermatog 91.4 1.5 3.3E-05 39.4 8.7 77 22-111 191-280 (569)
323 KOG4814|consensus 91.4 1.8 3.9E-05 41.0 9.5 100 196-304 358-457 (872)
324 PF10516 SHNi-TPR: SHNi-TPR; 91.4 0.3 6.5E-06 27.9 3.0 29 193-221 2-30 (38)
325 PHA02537 M terminase endonucle 91.1 1.3 2.8E-05 36.8 7.6 48 275-322 169-225 (230)
326 TIGR02561 HrpB1_HrpK type III 90.9 3.1 6.6E-05 32.0 8.8 69 121-210 28-96 (153)
327 PF04190 DUF410: Protein of un 90.3 11 0.00023 32.3 16.4 90 15-110 11-107 (260)
328 PRK15180 Vi polysaccharide bio 90.3 4.1 8.8E-05 37.5 10.4 124 169-308 301-424 (831)
329 COG3914 Spy Predicted O-linked 90.2 10 0.00022 35.8 13.2 124 122-277 50-178 (620)
330 PF10373 EST1_DNA_bind: Est1 D 89.9 0.87 1.9E-05 39.0 6.0 62 78-149 1-62 (278)
331 COG5191 Uncharacterized conser 89.8 0.81 1.8E-05 39.4 5.5 84 81-195 95-179 (435)
332 KOG0530|consensus 89.5 12 0.00026 31.8 19.6 181 17-219 41-251 (318)
333 PF15015 NYD-SP12_N: Spermatog 89.3 4.7 0.0001 36.4 9.9 97 199-301 190-288 (569)
334 PF12854 PPR_1: PPR repeat 88.7 1.3 2.8E-05 24.4 4.2 30 186-217 3-32 (34)
335 KOG1839|consensus 88.6 3.4 7.3E-05 42.5 9.5 122 77-222 956-1087(1236)
336 PF11207 DUF2989: Protein of u 88.1 13 0.00028 30.2 13.9 57 135-212 139-198 (203)
337 TIGR03504 FimV_Cterm FimV C-te 88.1 0.92 2E-05 26.9 3.4 26 195-220 2-27 (44)
338 PF07720 TPR_3: Tetratricopept 88.1 0.88 1.9E-05 25.6 3.1 31 277-307 3-35 (36)
339 COG2912 Uncharacterized conser 88.1 1.5 3.3E-05 37.1 5.9 65 253-318 194-258 (269)
340 PF12309 KBP_C: KIF-1 binding 87.9 20 0.00044 32.3 14.0 59 31-91 155-215 (371)
341 KOG4814|consensus 87.9 6.6 0.00014 37.5 10.3 85 116-221 367-457 (872)
342 KOG1258|consensus 87.8 25 0.00055 33.3 16.7 177 7-226 290-475 (577)
343 COG4259 Uncharacterized protei 87.5 2.3 4.9E-05 30.1 5.4 53 174-226 54-106 (121)
344 TIGR02561 HrpB1_HrpK type III 87.1 12 0.00026 28.8 9.7 75 75-159 26-100 (153)
345 PF00244 14-3-3: 14-3-3 protei 87.1 7.4 0.00016 32.7 9.5 42 96-147 4-46 (236)
346 cd02682 MIT_AAA_Arch MIT: doma 86.9 5.4 0.00012 26.7 6.9 29 75-103 29-57 (75)
347 COG3629 DnrI DNA-binding trans 86.6 3.7 7.9E-05 35.3 7.5 64 253-317 166-236 (280)
348 cd02683 MIT_1 MIT: domain cont 86.3 8.1 0.00017 26.0 8.0 28 12-39 4-31 (77)
349 KOG1464|consensus 86.2 3.9 8.5E-05 34.7 7.2 47 174-220 44-93 (440)
350 KOG2581|consensus 85.9 12 0.00026 33.7 10.4 116 193-318 170-290 (493)
351 KOG2422|consensus 85.0 36 0.00077 32.3 16.1 173 74-271 253-450 (665)
352 KOG2041|consensus 84.9 40 0.00088 32.9 18.1 26 193-218 797-822 (1189)
353 PF14863 Alkyl_sulf_dimr: Alky 84.8 5.6 0.00012 30.4 7.1 52 14-65 70-123 (141)
354 PRK13184 pknD serine/threonine 84.8 15 0.00032 37.4 11.7 97 71-191 487-586 (932)
355 KOG0890|consensus 84.7 16 0.00035 40.3 12.3 151 10-189 1666-1836(2382)
356 PF11207 DUF2989: Protein of u 84.3 21 0.00045 29.1 11.6 21 275-295 178-198 (203)
357 KOG2114|consensus 84.2 47 0.001 33.1 15.1 110 71-218 346-457 (933)
358 PF10255 Paf67: RNA polymerase 84.1 2.4 5.1E-05 38.5 5.5 50 171-220 136-192 (404)
359 PF10579 Rapsyn_N: Rapsyn N-te 83.9 11 0.00024 25.5 7.4 33 121-153 24-56 (80)
360 COG5191 Uncharacterized conser 83.6 3.8 8.3E-05 35.5 6.1 84 126-230 96-180 (435)
361 KOG4014|consensus 83.4 22 0.00047 28.6 15.8 199 42-304 30-233 (248)
362 COG3629 DnrI DNA-binding trans 83.2 6.6 0.00014 33.8 7.5 52 169-221 165-216 (280)
363 PRK15180 Vi polysaccharide bio 83.0 21 0.00046 33.1 10.8 38 75-112 305-342 (831)
364 PF04053 Coatomer_WDAD: Coatom 82.9 4.5 9.9E-05 37.4 7.0 101 172-304 276-376 (443)
365 PF10579 Rapsyn_N: Rapsyn N-te 82.8 9.6 0.00021 25.8 6.6 63 13-88 5-72 (80)
366 PF00244 14-3-3: 14-3-3 protei 82.3 29 0.00062 29.2 16.9 182 15-221 2-198 (236)
367 KOG1538|consensus 82.2 51 0.0011 32.0 17.0 187 16-220 634-832 (1081)
368 PF12854 PPR_1: PPR repeat 81.6 4 8.8E-05 22.4 3.9 30 269-300 3-32 (34)
369 KOG0529|consensus 80.7 44 0.00096 30.3 15.1 136 68-228 84-231 (421)
370 KOG4151|consensus 80.6 6.3 0.00014 38.3 7.1 130 174-321 44-174 (748)
371 KOG3807|consensus 80.6 25 0.00054 31.0 10.0 51 71-133 196-246 (556)
372 PF12753 Nro1: Nuclear pore co 80.4 2.4 5.3E-05 37.9 4.0 61 27-88 331-391 (404)
373 KOG4014|consensus 80.1 29 0.00063 27.9 13.4 182 16-221 36-233 (248)
374 COG2912 Uncharacterized conser 80.0 5.2 0.00011 34.0 5.7 64 72-145 194-257 (269)
375 PF11846 DUF3366: Domain of un 79.8 9.2 0.0002 30.8 7.1 59 254-314 125-183 (193)
376 COG3947 Response regulator con 79.6 5.8 0.00012 34.1 5.8 48 253-301 292-339 (361)
377 smart00101 14_3_3 14-3-3 homol 79.1 38 0.00082 28.6 15.1 175 97-302 5-198 (244)
378 COG2909 MalT ATP-dependent tra 79.0 75 0.0016 31.9 18.0 168 97-304 462-647 (894)
379 PF09670 Cas_Cas02710: CRISPR- 78.6 42 0.0009 30.5 11.5 62 16-88 133-198 (379)
380 PF10345 Cohesin_load: Cohesin 77.1 75 0.0016 30.9 18.2 118 75-223 37-170 (608)
381 PF10255 Paf67: RNA polymerase 77.0 7.4 0.00016 35.4 6.2 23 195-217 125-147 (404)
382 PF11846 DUF3366: Domain of un 76.5 9.7 0.00021 30.7 6.3 50 174-225 128-177 (193)
383 COG3947 Response regulator con 74.9 13 0.00027 32.2 6.5 49 169-218 291-339 (361)
384 PF13041 PPR_2: PPR repeat fam 74.6 7 0.00015 23.4 3.9 30 192-221 3-32 (50)
385 COG5107 RNA14 Pre-mRNA 3'-end 74.5 73 0.0016 29.5 15.1 110 193-316 398-507 (660)
386 PF01535 PPR: PPR repeat; Int 74.0 5.6 0.00012 20.6 3.0 27 194-220 2-28 (31)
387 PF12739 TRAPPC-Trs85: ER-Golg 73.4 75 0.0016 29.2 12.6 76 10-85 203-288 (414)
388 KOG0292|consensus 72.8 53 0.0011 33.0 10.8 123 196-318 995-1127(1202)
389 cd02680 MIT_calpain7_2 MIT: do 72.7 6.4 0.00014 26.4 3.5 17 253-269 19-35 (75)
390 cd02681 MIT_calpain7_1 MIT: do 72.2 5.4 0.00012 26.8 3.1 14 209-222 4-17 (76)
391 PF10345 Cohesin_load: Cohesin 71.2 1.1E+02 0.0023 29.9 16.8 153 121-301 39-205 (608)
392 smart00671 SEL1 Sel1-like repe 71.1 8.7 0.00019 20.8 3.5 29 276-304 2-34 (36)
393 KOG2114|consensus 70.4 1.2E+02 0.0027 30.3 14.4 170 17-217 337-515 (933)
394 PF07079 DUF1347: Protein of u 70.0 94 0.002 28.8 24.8 54 253-311 475-528 (549)
395 KOG1914|consensus 68.6 1.1E+02 0.0024 29.1 19.3 220 42-302 275-499 (656)
396 TIGR00756 PPR pentatricopeptid 67.9 11 0.00024 19.9 3.4 27 195-221 3-29 (35)
397 cd02682 MIT_AAA_Arch MIT: doma 66.8 34 0.00074 22.9 6.0 53 76-146 4-56 (75)
398 PF13226 DUF4034: Domain of un 66.7 85 0.0018 27.1 9.9 87 123-213 63-154 (277)
399 smart00386 HAT HAT (Half-A-TPR 63.9 19 0.00041 18.6 4.0 28 255-283 2-29 (33)
400 PF09797 NatB_MDM20: N-acetylt 63.8 84 0.0018 28.2 10.1 39 72-110 196-234 (365)
401 KOG0686|consensus 63.7 33 0.00072 31.1 7.0 98 193-301 151-255 (466)
402 PF13041 PPR_2: PPR repeat fam 63.6 29 0.00063 20.6 5.4 35 276-310 4-40 (50)
403 COG4455 ImpE Protein of avirul 63.0 26 0.00056 29.0 5.7 55 172-227 16-70 (273)
404 KOG0546|consensus 61.4 38 0.00082 30.1 6.9 66 72-147 288-353 (372)
405 smart00101 14_3_3 14-3-3 homol 60.9 1E+02 0.0022 26.0 17.4 44 16-59 3-51 (244)
406 PF11817 Foie-gras_1: Foie gra 60.8 1E+02 0.0022 26.0 9.7 27 193-219 179-205 (247)
407 PF14863 Alkyl_sulf_dimr: Alky 60.8 17 0.00036 27.8 4.2 38 73-110 84-121 (141)
408 cd02678 MIT_VPS4 MIT: domain c 60.6 47 0.001 22.1 7.6 25 15-39 7-31 (75)
409 PF08238 Sel1: Sel1 repeat; I 60.0 18 0.00039 20.0 3.4 29 193-221 2-37 (39)
410 KOG4151|consensus 59.9 41 0.00088 33.1 7.4 103 16-139 55-163 (748)
411 KOG2041|consensus 59.9 1.8E+02 0.004 28.7 19.2 113 19-153 739-868 (1189)
412 PF04212 MIT: MIT (microtubule 59.7 16 0.00035 23.8 3.5 21 282-302 12-32 (69)
413 COG4455 ImpE Protein of avirul 59.7 38 0.00082 28.1 6.2 54 253-307 14-67 (273)
414 PF06957 COPI_C: Coatomer (COP 59.3 37 0.00081 31.1 6.8 122 195-321 207-343 (422)
415 KOG0546|consensus 58.5 10 0.00022 33.5 3.0 66 253-319 288-354 (372)
416 PF10952 DUF2753: Protein of u 58.3 41 0.00088 25.0 5.5 28 195-222 4-31 (140)
417 COG5159 RPN6 26S proteasome re 58.1 1.3E+02 0.0028 26.2 13.8 47 18-64 7-63 (421)
418 KOG1464|consensus 58.0 1.2E+02 0.0027 26.1 12.6 206 74-304 42-260 (440)
419 cd02683 MIT_1 MIT: domain cont 57.9 55 0.0012 22.0 6.7 16 258-273 31-46 (77)
420 COG3014 Uncharacterized protei 56.7 53 0.0012 29.1 6.9 113 174-304 38-154 (449)
421 PF13812 PPR_3: Pentatricopept 56.1 28 0.00061 18.3 3.7 27 194-220 3-29 (34)
422 PF01239 PPTA: Protein prenylt 54.8 25 0.00053 18.6 3.2 28 78-105 2-29 (31)
423 PF04212 MIT: MIT (microtubule 54.1 58 0.0012 21.1 7.3 26 14-39 5-30 (69)
424 PF04053 Coatomer_WDAD: Coatom 53.6 1.9E+02 0.0041 26.9 13.9 39 22-60 269-309 (443)
425 smart00745 MIT Microtubule Int 53.4 38 0.00083 22.5 4.7 17 292-308 32-48 (77)
426 KOG0276|consensus 53.3 50 0.0011 31.6 6.6 82 193-305 615-696 (794)
427 KOG2581|consensus 52.3 98 0.0021 28.3 8.0 54 172-225 224-280 (493)
428 TIGR02710 CRISPR-associated pr 50.7 2E+02 0.0043 26.2 11.3 56 18-84 134-196 (380)
429 cd02681 MIT_calpain7_1 MIT: do 50.5 27 0.00058 23.5 3.4 13 258-270 5-17 (76)
430 smart00299 CLH Clathrin heavy 49.7 1.1E+02 0.0023 22.9 11.9 30 121-150 25-54 (140)
431 COG1747 Uncharacterized N-term 49.7 2.4E+02 0.0051 26.9 18.2 173 36-225 88-292 (711)
432 PF11817 Foie-gras_1: Foie gra 49.6 1.6E+02 0.0034 24.8 10.2 48 172-219 193-245 (247)
433 cd02679 MIT_spastin MIT: domai 48.8 20 0.00043 24.3 2.6 17 255-271 4-20 (79)
434 PF02064 MAS20: MAS20 protein 48.8 29 0.00063 25.7 3.7 31 195-225 66-96 (121)
435 KOG0276|consensus 47.3 1.3E+02 0.0027 29.1 8.2 75 72-185 620-694 (794)
436 COG4259 Uncharacterized protei 46.9 79 0.0017 22.6 5.3 49 262-310 59-107 (121)
437 PF05053 Menin: Menin; InterP 46.6 1.6E+02 0.0035 28.2 8.7 46 174-220 296-346 (618)
438 KOG1463|consensus 45.7 2.2E+02 0.0049 25.4 12.7 25 16-40 6-30 (411)
439 COG2909 MalT ATP-dependent tra 45.0 3.5E+02 0.0076 27.5 14.0 51 172-222 473-527 (894)
440 KOG1538|consensus 43.9 2.4E+02 0.0052 27.7 9.5 58 252-316 785-842 (1081)
441 KOG4279|consensus 43.9 62 0.0014 31.9 5.8 109 193-307 202-319 (1226)
442 cd02679 MIT_spastin MIT: domai 43.6 45 0.00097 22.6 3.7 32 173-220 5-36 (79)
443 cd02677 MIT_SNX15 MIT: domain 43.3 99 0.0021 20.7 5.3 19 292-310 30-48 (75)
444 PF13226 DUF4034: Domain of un 43.2 2.2E+02 0.0048 24.6 11.6 135 20-160 6-156 (277)
445 PF12753 Nro1: Nuclear pore co 43.2 1.2E+02 0.0026 27.6 7.2 62 117-188 332-393 (404)
446 KOG3024|consensus 43.0 1.5E+02 0.0033 25.6 7.4 99 17-127 29-151 (312)
447 PF05053 Menin: Menin; InterP 42.8 94 0.002 29.6 6.7 28 276-303 319-346 (618)
448 COG5159 RPN6 26S proteasome re 41.9 2.4E+02 0.0052 24.6 9.1 46 20-65 131-184 (421)
449 PHA02537 M terminase endonucle 41.8 45 0.00098 27.8 4.2 31 195-225 172-211 (230)
450 PF02064 MAS20: MAS20 protein 41.4 80 0.0017 23.4 5.0 32 278-309 66-97 (121)
451 PF05131 Pep3_Vps18: Pep3/Vps1 40.3 39 0.00084 26.0 3.4 37 283-323 111-147 (147)
452 PF09205 DUF1955: Domain of un 40.0 1.6E+02 0.0036 22.4 6.4 30 192-221 120-149 (161)
453 PF09797 NatB_MDM20: N-acetylt 39.8 83 0.0018 28.3 6.0 44 174-218 200-243 (365)
454 smart00745 MIT Microtubule Int 39.7 1.1E+02 0.0024 20.2 7.8 18 74-91 30-47 (77)
455 KOG0686|consensus 39.5 1.5E+02 0.0032 27.1 7.2 102 95-219 152-256 (466)
456 PF14689 SPOB_a: Sensor_kinase 38.6 92 0.002 19.8 4.5 27 276-302 24-50 (62)
457 PF12739 TRAPPC-Trs85: ER-Golg 36.5 3.4E+02 0.0074 24.9 11.1 106 194-304 210-329 (414)
458 cd02677 MIT_SNX15 MIT: domain 35.7 1.3E+02 0.0029 20.0 6.7 43 75-135 3-45 (75)
459 cd02656 MIT MIT: domain contai 33.9 1.4E+02 0.003 19.6 7.4 18 74-91 28-45 (75)
460 cd02678 MIT_VPS4 MIT: domain c 33.7 1.4E+02 0.0031 19.7 6.2 14 258-271 31-44 (75)
461 cd02684 MIT_2 MIT: domain cont 33.6 1.5E+02 0.0032 19.8 7.9 26 14-39 6-31 (75)
462 PRK15490 Vi polysaccharide bio 33.6 3.1E+02 0.0067 26.5 8.8 73 23-110 17-91 (578)
463 PRK15490 Vi polysaccharide bio 32.7 3.1E+02 0.0067 26.5 8.6 70 72-153 21-90 (578)
464 KOG4279|consensus 32.6 3.2E+02 0.007 27.4 8.6 75 27-109 256-336 (1226)
465 PF08565 CDC37_M: Cdc37 Hsp90 32.0 1.3E+02 0.0028 24.0 5.2 57 165-221 54-110 (173)
466 PF08969 USP8_dimer: USP8 dime 31.9 68 0.0015 23.3 3.5 27 13-39 37-63 (115)
467 KOG0687|consensus 31.8 3.7E+02 0.0081 23.9 11.6 102 192-304 104-210 (393)
468 smart00299 CLH Clathrin heavy 31.1 2.2E+02 0.0048 21.1 10.2 33 74-106 22-54 (140)
469 COG5091 SGT1 Suppressor of G2 30.7 1.5E+02 0.0032 25.5 5.4 101 203-307 6-111 (368)
470 COG5187 RPN7 26S proteasome re 29.4 3.9E+02 0.0085 23.4 10.3 21 44-64 113-133 (412)
471 PF04348 LppC: LppC putative l 29.3 18 0.00039 34.5 0.0 118 174-304 6-127 (536)
472 PRK15326 type III secretion sy 29.2 1.9E+02 0.0041 19.7 7.2 37 72-111 20-56 (80)
473 KOG0739|consensus 28.8 3.4E+02 0.0073 24.0 7.3 42 258-300 35-77 (439)
474 KOG2063|consensus 28.7 6.6E+02 0.014 25.8 15.6 180 17-220 507-712 (877)
475 COG5187 RPN7 26S proteasome re 28.5 4.1E+02 0.0088 23.3 11.0 123 174-306 92-223 (412)
476 PF10366 Vps39_1: Vacuolar sor 27.9 70 0.0015 23.1 2.9 26 278-303 42-67 (108)
477 PF07219 HemY_N: HemY protein 27.6 1.7E+02 0.0036 21.0 4.8 37 170-207 72-108 (108)
478 TIGR00985 3a0801s04tom mitocho 26.7 88 0.0019 24.1 3.3 30 197-226 95-125 (148)
479 COG5600 Transcription-associat 26.5 1.9E+02 0.004 26.2 5.6 32 193-224 221-252 (413)
480 PF02184 HAT: HAT (Half-A-TPR) 25.8 1.2E+02 0.0027 16.5 3.6 25 173-199 3-27 (32)
481 COG5536 BET4 Protein prenyltra 25.2 4.6E+02 0.0099 22.8 7.5 135 70-229 85-230 (328)
482 PF12921 ATP13: Mitochondrial 24.6 3E+02 0.0065 20.5 6.9 33 193-225 3-35 (126)
483 KOG3783|consensus 24.0 6.4E+02 0.014 24.1 14.4 89 172-273 248-336 (546)
484 KOG4056|consensus 23.8 1.3E+02 0.0028 22.8 3.6 30 197-226 86-115 (143)
485 KOG0687|consensus 23.4 5.4E+02 0.012 23.0 12.3 130 68-222 80-211 (393)
486 PF10952 DUF2753: Protein of u 22.4 3.4E+02 0.0074 20.4 5.8 33 194-226 52-88 (140)
487 cd09240 BRO1_Alix Protein-inte 22.3 5.6E+02 0.012 22.9 12.1 28 193-220 256-283 (346)
488 KOG2997|consensus 22.2 1.7E+02 0.0036 25.9 4.4 46 6-51 11-57 (366)
489 PRK04778 septation ring format 22.0 1.1E+02 0.0024 29.5 3.8 50 9-58 514-563 (569)
490 KOG0739|consensus 20.9 4.3E+02 0.0093 23.4 6.6 18 76-93 34-51 (439)
491 PF14852 Fis1_TPR_N: Fis1 N-te 20.9 1.7E+02 0.0037 16.2 4.7 34 47-90 2-35 (35)
492 PF09205 DUF1955: Domain of un 20.0 4.1E+02 0.0089 20.4 7.7 30 275-304 120-149 (161)
No 1
>KOG4626|consensus
Probab=99.97 E-value=1.3e-28 Score=218.78 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=214.2
Q ss_pred hhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 5 EAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
.+++..|.-.+.+-..|+.+.+.|++++|+..++.+ ..|++++++..+|-++...|+... |.++|
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~-------------a~~~~ 173 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL-------------AVQCF 173 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc-------------cHHHH
Confidence 446667777777777999999999999999999987 599999999999999999887655 44455
Q ss_pred HhhccCCCCcHHHHHHHHHHHHHhhcccchHHH------------------------HHhHHHHHHHHHHHHccCCCChh
Q psy11738 83 YNALPQHEDHYAIHKWLAVILNEKATLEGTKAR------------------------IQQLETIKHHMNKAIELKPDDST 138 (323)
Q Consensus 83 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~a~~~~~~al~l~p~~~~ 138 (323)
..++.++|++..++..+|.++-.+|++.++... .++...|+.+|++|++++|+-+.
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH
Confidence 555555555555555555554444444433221 13334899999999999999999
Q ss_pred HHHHHhhHHHHhcCCcHHHHHHHHHh---------hcC-----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 139 TLFMLGMWCFEITDMPWYQRKIANAI---------FDT-----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 139 ~~~~lg~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
+|++||.+|-..+.+......+..++ +++ .+.|..+-||..|+++++++|++ +.++.+||.++..
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd 332 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKD 332 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHh
Confidence 99999999999887744333322221 111 26788999999999999999998 7999999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH-----------HH-------------HHHHHHhhccCCCCcHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW-----------YQ-------------RKIANAIFDTLPTSSYEEAL 260 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-----------~~-------------~~~a~~~~~~~~~~~~~~Al 260 (323)
.|+.++|..+|++++.+.|++.+... .++.+.. |. ..++. +++ ..|++++|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~-i~k--qqgnl~~Ai 408 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS-IYK--QQGNLDDAI 408 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH-HHH--hcccHHHHH
Confidence 99999999999999999999976543 1110000 00 00111 111 257888888
Q ss_pred HHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh-hHHH
Q psy11738 261 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-QEAT 311 (323)
Q Consensus 261 ~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~ 311 (323)
.+|++++.+.|.+ ++++.++|.+|..+|+.+.|+.+|++|+.++|. .|+.
T Consensus 409 ~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 409 MCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred HHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888 788888888888888888888888888888776 4443
No 2
>KOG4626|consensus
Probab=99.97 E-value=2.1e-29 Score=223.71 Aligned_cols=253 Identities=16% Similarity=0.102 Sum_probs=212.2
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-------------------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS------------------- 67 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~------------------- 67 (323)
.+|.-+..+-..|-.+..+|+...||..++++ .+|+..++++.||.+|..++.+..+..
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 33433444444555666677777777777776 477777777777777777776553210
Q ss_pred --HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 68 --DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 68 --~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.-.-+|.++-|+..|++++++.|+.++++.++|..+-..|+.. +|..+|.+++.+.|+++++.++||.
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~----------ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT----------EAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH----------HHHHHHHHHHHhCCccHHHHHHHHH
Confidence 0012566788999999999999999999999999999999888 8999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++.++|.+ ++|...|+++++..|+. +.++.+||.+|-++|++++|+.+|+.++++.|+.
T Consensus 363 i~~E~~~~--------------------e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 363 IYREQGKI--------------------EEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHhccc--------------------hHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 99999877 99999999999999997 7999999999999999999999999999999997
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.+.. ++++...+. +|+.+.|++.|.+|+.++|.+ ++++.+||.+|...|+..+|+..|+.+|++.
T Consensus 422 Ada~----~NmGnt~ke----------~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADAL----SNMGNTYKE----------MGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHH----HhcchHHHH----------hhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 7643 333333222 688999999999999999998 8999999999999999999999999999998
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
|+
T Consensus 487 PD 488 (966)
T KOG4626|consen 487 PD 488 (966)
T ss_pred CC
Confidence 88
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.3e-25 Score=209.86 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=209.4
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|.....+...|..++..|++++|+..++++ .+|.+...+..+|.++...|+ +++|+.++++++++
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~-------------~~eA~~~~~~al~~ 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD-------------PDKAEEDFDKALKL 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHh
Confidence 445555677788888899999999999987 589999999999999988774 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+++.+++.+|.++...|++. +|+.+|+++++++|++..++..+|.+++..|++
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~--------------- 449 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFA----------QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI--------------- 449 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH---------------
Confidence 9999999999999999999998 899999999999999999999999999988755
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+++++..|++ +.++..+|.++...|++++|+..|++++.++|....... ....++.. +..++
T Consensus 450 -----~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~---~~~~l~~~--a~~~~ 518 (615)
T TIGR00990 450 -----ASSMATFRRCKKNFPEA-PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM---NVLPLINK--ALALF 518 (615)
T ss_pred -----HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc---cHHHHHHH--HHHHH
Confidence 99999999999999998 799999999999999999999999999999987643221 00111111 11122
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
. ..+++++|+..|.+++.++|++ ..++..+|.++..+|++++|+.+|++++++.+.
T Consensus 519 ~--~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 519 Q--WKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred H--HhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 2 1478999999999999999998 688999999999999999999999999999765
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=7.8e-24 Score=202.34 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=210.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc------------------------
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS------------------------ 67 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~------------------------ 67 (323)
...++..|..++..|++++|+..+.++ .+|+++.+++++|.+|..+|++..+..
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL 239 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667788888888888888888887 588889999999999888887532200
Q ss_pred ------------------------------------------------HH---------------HHHHHHHHHHHHHHh
Q psy11738 68 ------------------------------------------------DA---------------DKKQLILSAYFLVYN 84 (323)
Q Consensus 68 ------------------------------------------------~~---------------~~~~~~~~A~~~~~~ 84 (323)
++ ...+.+++|+..|++
T Consensus 240 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 240 KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 00 001367889999999
Q ss_pred hccC---CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 85 ALPQ---HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 85 al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
+++. .|..+.++..+|.++..+|++. +|+..|+++++++|++..++..+|.++...|++
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~----------eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-------- 381 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHL----------EALADLSKSIELDPRVTQSYIKRASMNLELGDP-------- 381 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH--------
Confidence 9976 4888889999999999999998 899999999999999999999999999887655
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
++|+..|+++++++|++ +.+++.+|.++...|++++|+.+|++++.++|.+.....
T Consensus 382 ------------~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~----------- 437 (615)
T TIGR00990 382 ------------DKAEEDFDKALKLNSED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI----------- 437 (615)
T ss_pred ------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH-----------
Confidence 99999999999999998 699999999999999999999999999999998754321
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..++. .|++++|+..|.+++...|++ +..+..+|.++..+|++++|+.+|++++++.|.
T Consensus 438 ~la~~~~~---~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 438 QLGVTQYK---EGSIASSMATFRRCKKNFPEA-PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 12222232 789999999999999999998 799999999999999999999999999999875
No 5
>KOG1126|consensus
Probab=99.92 E-value=3.8e-24 Score=192.29 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=202.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC-----------C-CcHHH---------HH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSS-----------S-LSDAD---------KK 72 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~-----------~-~~~~~---------~~ 72 (323)
-+.+.|..+|+.++|++|..+++.+ ..|-.++..-.+..+++++.+.-. + ..|+. -+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 3567899999999999999888776 244433333333333333332110 0 01111 25
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+..+.|+.+|++|+.+||.++-+|..+|.-+.....++ .|..+|.+|+..+|.+..+||.+|.+|..++.
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d----------~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD----------KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHH----------hHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence 56788999999999999999999998888888777777 89999999999999999999999999999865
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ +.|.-+|++|++++|.+ ......+|.++.+.|+.++|+.+|++|+.++|.+.-.++..
T Consensus 505 ~--------------------e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 505 L--------------------EFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred h--------------------hHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5 99999999999999998 68899999999999999999999999999999997554311
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+..++. .+++++|+..+++...+-|+. ...++.+|.+|..+|+.+.|+..|.-|.+++|....
T Consensus 564 -----------~~il~~---~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 -----------ASILFS---LGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -----------HHHHHh---hcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 111222 689999999999999999998 789999999999999999999999999999988655
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4e-21 Score=183.83 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH----HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ----AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~ 245 (323)
.|++++|+..|.++++++|++ +.++..+|.+|...|++++ |+..|++++.++|++..... . ++.
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~-~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~-~----------lg~ 292 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDG-AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT-L----------YAD 292 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH-H----------HHH
Confidence 578888999999999988887 6888889999999999885 78899999999888654322 1 111
Q ss_pred HhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 246 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 246 ~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+.. .|++++|+..+++++.++|++ +.++..+|.+|...|++++|+..|+++++..|..
T Consensus 293 ~l~~---~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 293 ALIR---TGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHH---CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 1221 577888888888888888877 6777778888888888888888888877776663
No 7
>KOG1126|consensus
Probab=99.89 E-value=9.8e-22 Score=176.88 Aligned_cols=257 Identities=16% Similarity=0.158 Sum_probs=205.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHH------------------HHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDAD------------------KKQLILS 77 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~------------------~~~~~~~ 77 (323)
|.++-....+=+.++|+..+.++ ..++..=++-.+|++|++++++..+....+ -..++++
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 45555666677889999999997 466777778899999999998876421000 0111111
Q ss_pred H--H-HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 78 A--Y-FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 78 A--~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
- + .+.+-.+..+|+.|+.|-.+|.|+..+++.+ .|+++|++|+.+||...-+|-.+|.=+....++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~----------~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~- 471 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD----------TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF- 471 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH----------HHHHHHHHhhccCCccchhhhhcCChhhhhHHH-
Confidence 1 1 2345567889999999999999999999988 899999999999999999999999766665444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+.|..+|++|+.++|+++ .+|+.||.+|.++++++.|.-+|++|+.++|.+....+. ++
T Consensus 472 -------------------d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~-~g 530 (638)
T KOG1126|consen 472 -------------------DKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH-IG 530 (638)
T ss_pred -------------------HhHHHHHHhhhcCCchhh-HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh-hh
Confidence 999999999999999996 999999999999999999999999999999998654331 00
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KL 313 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 313 (323)
.. +. ..++.++|+..|++|+.++|.+ +...+..|.++..++++++|+..+++..++.|.+-.+ -+
T Consensus 531 ---~~-------~~---~~k~~d~AL~~~~~A~~ld~kn-~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 531 ---RI-------QH---QLKRKDKALQLYEKAIHLDPKN-PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred ---HH-------HH---HhhhhhHHHHHHHHHHhcCCCC-chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 11 11 1578899999999999999999 7889999999999999999999999999998886665 55
Q ss_pred HHHHHhh
Q psy11738 314 LEKAKSY 320 (323)
Q Consensus 314 l~~~~~~ 320 (323)
+-++.+.
T Consensus 597 lgki~k~ 603 (638)
T KOG1126|consen 597 LGKIYKR 603 (638)
T ss_pred HHHHHHH
Confidence 5555543
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=7.3e-21 Score=182.05 Aligned_cols=250 Identities=13% Similarity=0.088 Sum_probs=188.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|+........|..+...|++++|+..++++ .+|+++.++..++.++...|+. ++|+..+.+++
T Consensus 105 ~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~-------------~eA~~~~~~~~ 171 (656)
T PRK15174 105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE-------------LQAISLARTQA 171 (656)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh-------------HHHHHHHHHHH
Confidence 44555566666677777777777777777766 3677777777777777766654 44555555555
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHH-------------------------HHHhHHHHHHHHHHHHccCCCChhHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKA-------------------------RIQQLETIKHHMNKAIELKPDDSTTLF 141 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~a~~~~~~al~l~p~~~~~~~ 141 (323)
..+|+++.++..++. +...|++..+.. ..+...+|+..+.++++++|+++.++.
T Consensus 172 ~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 172 QEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred HhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555555555444322 333333322110 112334788999999999999999999
Q ss_pred HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 142 MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE----EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 142 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
.+|.++...|++ + +|+..|+++++++|++ +.++..+|.++...|++++|+.++++
T Consensus 251 ~Lg~~l~~~G~~--------------------~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 251 SLGLAYYQSGRS--------------------REAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHcCCc--------------------hhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998766 5 4899999999999998 69999999999999999999999999
Q ss_pred HhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 218 TKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 218 al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
++.++|.+..... . ++..+.. .|++++|+..|.+++..+|+. ...+..+|.++...|++++|+.+
T Consensus 310 al~l~P~~~~a~~-~----------La~~l~~---~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 310 SLATHPDLPYVRA-M----------YARALRQ---VGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHhCCCCHHHHH-H----------HHHHHHH---CCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999765422 1 1222222 689999999999999999987 56677789999999999999999
Q ss_pred HHHhhCCCChh
Q psy11738 298 LEMTKNYPAVQ 308 (323)
Q Consensus 298 ~~~al~~~~~~ 308 (323)
|++++++.|..
T Consensus 375 l~~al~~~P~~ 385 (656)
T PRK15174 375 FEHYIQARASH 385 (656)
T ss_pred HHHHHHhChhh
Confidence 99999998773
No 9
>KOG0624|consensus
Probab=99.88 E-value=1.6e-20 Score=157.05 Aligned_cols=281 Identities=15% Similarity=0.136 Sum_probs=206.9
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.+.+.+++.-++.|..++..|++.+|+..|..+ .+|++-.++++.|.+|..+|..-. |+..+.+
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~-------------al~Dl~r 97 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA-------------ALQDLSR 97 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc-------------chhhHHH
Confidence 5677888899999999999999999999999998 599999999999999999997654 4555555
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchH-------------------------------------HHH--HhHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTK-------------------------------------ARI--QQLETIKHH 125 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~--~~~~~a~~~ 125 (323)
.+++.|+...+....|.++..+|+++.+. ... ++...+++.
T Consensus 98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 55555555555555555555555544110 000 233345566
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
..+.+++.|-+...+...+.+|...|+. ..||..++.+-++..++ ...++.++..++..
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~--------------------k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~v 236 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEP--------------------KKAIHDLKQASKLSQDN-TEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHhccccc-hHHHHHHHHHHHhh
Confidence 6777777777777777777776666655 89999999999998887 58899999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhh----------------hhcchhHHHHH-HHHHhhcc------------------
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCF----------------EITDMPWYQRK-IANAIFDT------------------ 250 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~----------------~~~~~~~~~~~-~a~~~~~~------------------ 250 (323)
|+.+.++...+..++++|++..-.-+ .+....|.... ....++..
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 99999999999999999988421000 00000110000 00001111
Q ss_pred -CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhhc
Q psy11738 251 -LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYLK 322 (323)
Q Consensus 251 -~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~~ 322 (323)
...+++-+||..|.+++.++|++ ..++...+.+|+...+|+.|+..|++|.+++|+ ..+++.+.+++.+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 12477999999999999999998 899999999999999999999999999999776 455699999988764
No 10
>KOG0547|consensus
Probab=99.88 E-value=7.4e-21 Score=165.50 Aligned_cols=240 Identities=11% Similarity=0.084 Sum_probs=206.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.+...|...+-.|++-.|...++.+ .+|.++..++++|-+|....+. ++...+|.+|..+||+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-------------~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-------------EKMWKDFNKAEDLDPE 392 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-------------HHHHHHHHHHHhcCCC
Confidence 455677888888899999999999887 4888888899999999776643 5579999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
|++.|++.|.++..+++++ +|+..|++++.++|++..++..++-..|+.+.+
T Consensus 393 n~dvYyHRgQm~flL~q~e----------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~------------------ 444 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYE----------EAIADFQKAISLDPENAYAYIQLCCALYRQHKI------------------ 444 (606)
T ss_pred CCchhHhHHHHHHHHHHHH----------HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH------------------
Confidence 9999999999999999999 899999999999999999999999998888755
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+++...|+.+.+..|+. +.++...|.++..+++|++|++.|.+++.+.|......+ +-.....+. ..+++
T Consensus 445 --~~~m~~Fee~kkkFP~~-~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v---~~~plV~Ka--~l~~q-- 514 (606)
T KOG0547|consen 445 --AESMKTFEEAKKKFPNC-PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV---NAAPLVHKA--LLVLQ-- 514 (606)
T ss_pred --HHHHHHHHHHHHhCCCC-chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc---cchhhhhhh--Hhhhc--
Confidence 99999999999999997 799999999999999999999999999999988543322 111122222 12233
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+++..|+..+.+|++++|.. ..++..||.+-+.+|+.++|++.|++++.+.
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3689999999999999999997 7999999999999999999999999998884
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=5.9e-20 Score=186.60 Aligned_cols=261 Identities=12% Similarity=-0.001 Sum_probs=191.2
Q ss_pred HhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 19 KKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 19 ~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
..|..++..|++++|+..++++ .+|++++++..+|.+|...|+ +++|+.+++++++++|++....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-------------~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-------------RARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCccchh
Confidence 3477888899999999999997 599999999999999998885 4679999999999999876432
Q ss_pred --------------HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH---
Q psy11738 97 --------------KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK--- 159 (323)
Q Consensus 97 --------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~--- 159 (323)
...|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++......
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~----------eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12344555556555 566666666666666666666666666655544211100
Q ss_pred --------------HHHHhh-------------------------------------c--CCCCCCHHHHHHHHHHHHhc
Q psy11738 160 --------------IANAIF-------------------------------------D--TLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 160 --------------~~~~~~-------------------------------------~--~~~~~~~~~A~~~~~~al~~ 186 (323)
+...+. + ....+++++|+..|++++++
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 0 01358999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh---hc-------------ch--------------
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE---IT-------------DM-------------- 236 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~-------------~~-------------- 236 (323)
+|++ +.+++.+|.+|...|++++|+..+++++..+|.+....... +. .+
T Consensus 491 ~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 491 DPGS-VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 9998 69999999999999999999999999999999886543200 00 00
Q ss_pred ---------------------------------hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 237 ---------------------------------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 237 ---------------------------------~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
......++..+. ..|++++|+..|++++..+|++ +.++..+|.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~---~~g~~~~A~~~y~~al~~~P~~-~~a~~~la~ 645 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ---QRGDYAAARAAYQRVLTREPGN-ADARLGLIE 645 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 000011111111 2588999999999999999998 788999999
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|...|++++|+.+|++++...|.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999888765
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=8e-20 Score=181.57 Aligned_cols=271 Identities=17% Similarity=0.123 Sum_probs=177.0
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------c--------
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------S-------- 67 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~-------- 67 (323)
.|......+..+..+...|++++|+..++++ ..|.+++++..+|.+|...|++.... .
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445555666777777777777777777776 46777777777777777766543210 0
Q ss_pred -HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 68 -DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 68 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
.....+++++|+..++++++.+|++..++..++.++...|++. +|...++++....|.++..+..+|.+
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE----------SAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 0001223445555555555555555555555555555555554 45555555555556666666666666
Q ss_pred HHHhcCCcHHHHHHHHHhhcC-------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH
Q psy11738 147 CFEITDMPWYQRKIANAIFDT-------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 213 (323)
+...|++......+...+... ...|++++|+..++++++.+|++ ..+++.+|.+|..+|++++|+.
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-AVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHH
Confidence 666665533222222211110 13467788888888888888887 5788888888888888888888
Q ss_pred HHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH
Q psy11738 214 YLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 214 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~ 293 (323)
+|++++...|.+..... .+++. .. ..++ .+|+..+++++.+.|++ +..+..+|.+|...|++++
T Consensus 792 ~~~~~~~~~p~~~~~~~----~l~~~-------~~---~~~~-~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLN----NLAWL-------YL---ELKD-PRALEYAEKALKLAPNI-PAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHHhCCCCHHHHH----HHHHH-------HH---hcCc-HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHH
Confidence 88888888776543211 11222 11 1455 77999999999999988 7888899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|+++++++|.
T Consensus 856 A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 856 ALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999999876
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=6.7e-20 Score=166.15 Aligned_cols=258 Identities=14% Similarity=0.013 Sum_probs=175.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
....+..|..+...|++++|+..+.++ .+|++++++..+|.++...|++ ++|+..+++++...+.
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEV-------------DRAIRIHQNLLSRPDL 101 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcH-------------HHHHHHHHHHhcCCCC
Confidence 344456677777778888888888776 4777777888888888777754 3355555555543221
Q ss_pred c----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc-
Q psy11738 92 H----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD- 166 (323)
Q Consensus 92 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~- 166 (323)
. ..++..+|.++...|++. +|...|.++++.+|.+..++..++.++...|++......+...+..
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~----------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLD----------RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 1 133445555555555555 4555555555555555555555555555555442211111100000
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 167 ------------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 167 ------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
....+++++|+..|+++++.+|+. ..+++.+|.+|...|++++|++++++++..+|.+...
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 012356799999999999999997 6899999999999999999999999999987765322
Q ss_pred hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 229 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
... .++..+.. .|++++|+..+.+++..+|+. . .+..+|.++...|++++|+..++++++..|+.
T Consensus 251 ~~~----------~l~~~~~~---~g~~~~A~~~l~~~~~~~p~~-~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 251 VLP----------KLMECYQA---LGDEAEGLEFLRRALEEYPGA-D-LLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHH----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCc-h-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 111 12222222 689999999999999999986 3 45899999999999999999999999998876
Q ss_pred HH
Q psy11738 309 EA 310 (323)
Q Consensus 309 ~~ 310 (323)
..
T Consensus 316 ~~ 317 (389)
T PRK11788 316 RG 317 (389)
T ss_pred HH
Confidence 54
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=4e-20 Score=174.14 Aligned_cols=199 Identities=14% Similarity=0.013 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+.+++|+.+++++++++|+++.++..+|.++..++..... ...+...+|...++++++++|+++.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~-~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF-DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4678999999999999999999999999988776653211 112334589999999999999999999999999988876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ ++|+.+|+++++++|++ +.+++.+|.++...|++++|+.++++++.++|.+......
T Consensus 354 ~--------------------~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~- 411 (553)
T PRK12370 354 Y--------------------IVGSLLFKQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT- 411 (553)
T ss_pred H--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH-
Confidence 5 99999999999999998 7999999999999999999999999999999997643221
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC-CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
. +..++. .|++++|+..+++++... |+. +..+..+|.+|..+|++++|...+.++...+|..
T Consensus 412 ~----------~~~~~~---~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 412 K----------LWITYY---HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred H----------HHHHHh---ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 1 001111 578999999999999886 666 7888999999999999999999999988877763
No 15
>KOG0550|consensus
Probab=99.86 E-value=1.2e-20 Score=161.10 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=217.3
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+......+++...++..++...+|.+|+..+..+ ..|+++..|...+-++..+++ |++|...+++
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~-------------~~~a~~dar~ 108 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGR-------------FEEALGDARQ 108 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHh-------------Hhhcccchhh
Confidence 4455567788999999999999999999999987 599999999999999999885 4557777777
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHH------------------------------------------hHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQ------------------------------------------QLETI 122 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~a 122 (323)
.++++|..+..+...+.++..++...++.+.+. ...+|
T Consensus 109 ~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 109 SVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred heecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 777777777777777777776666654442221 12244
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----------
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY----------- 191 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 191 (323)
...--..+++++.+.++.+..|.+++...+. +.|+.+|++++.++|+..
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~--------------------~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNA--------------------DKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccch--------------------HHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 4555667788888888888888888877766 999999999999999862
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
..++-.-|.-..+.|++..|-++|..++.++|.+.......+ ..+.+. ....|+.++|+..+..++.++|
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY-----~nra~v-----~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY-----GNRALV-----NIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH-----HHhHhh-----hcccCCchhhhhhhhhhhhcCH
Confidence 134556677889999999999999999999999875433111 111111 2347899999999999999999
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhcC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~~ 323 (323)
.+ ..++...|.||..++++++|+++|++++++....+..+.+.+++.-|++
T Consensus 319 sy-ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 319 SY-IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 98 8999999999999999999999999999998888888888888876653
No 16
>KOG0547|consensus
Probab=99.86 E-value=1e-19 Score=158.49 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=193.1
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.+-.+|+.+|..|+|++||.+|..+ ..|+.+-++-.++-||..+|++ ++-++.+.+|++++|+.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~-------------~~Vied~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDW-------------EKVIEDCTKALELNPDYV 183 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH-------------HHHHHHHHHHhhcCcHHH
Confidence 3556899999999999999999997 4788788999999999988865 558999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchHHH----------------------------------------------------------
Q psy11738 94 AIHKWLAVILNEKATLEGTKAR---------------------------------------------------------- 115 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 115 (323)
.+++..+..+..+|++.++..-
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 9999999999988887432100
Q ss_pred ---------------------------------------------------------------------------HHhHH
Q psy11738 116 ---------------------------------------------------------------------------IQQLE 120 (323)
Q Consensus 116 ---------------------------------------------------------------------------~~~~~ 120 (323)
.++..
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 00000
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.|.+.|+++|+++|.+...+..+|..|....+- ++-.+.|.+|..++|++ +++|+..|.
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~--------------------~~~~~~F~~A~~ldp~n-~dvYyHRgQ 402 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS--------------------EKMWKDFNKAEDLDPEN-PDVYYHRGQ 402 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc--------------------HHHHHHHHHHHhcCCCC-CchhHhHHH
Confidence 111444445555554444444444444444333 88999999999999998 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
++.-++++++|+.-|+++++++|.+..... .++.++|. .++++++...|..+....|+. +..+..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~i-----------Ql~~a~Yr---~~k~~~~m~~Fee~kkkFP~~-~Evy~~ 467 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYI-----------QLCCALYR---QHKIAESMKTFEEAKKKFPNC-PEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHhCCCC-chHHHH
Confidence 999999999999999999999998864321 23333444 568999999999999999997 899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.|.++...++++.|.+.|.+|+++.|.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999887
No 17
>KOG1155|consensus
Probab=99.86 E-value=2.3e-19 Score=155.34 Aligned_cols=257 Identities=16% Similarity=0.182 Sum_probs=201.6
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC------C------cHH---------HHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS------L------SDA---------DKKQL 74 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~------~------~~~---------~~~~~ 74 (323)
-+.|...+...+|++|+..++.+ .+|-..+-+-.+..+++-+.+-..- . .+| ...+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 45667778889999999999887 3776655555555555554441100 0 011 13566
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.++|+.+|++|++++|....+|..+|.-|..+.+-. .|++.|.+|++++|.|..+||.||..|-.++=.
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~----------AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh- 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH----------AAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH- 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH----------HHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-
Confidence 799999999999999999999999999999998888 899999999999999999999999998776533
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
.=|+-+|++|+++.|++ +..|..||.||.++++.++|+++|.+|+.....+..+.. .+
T Consensus 415 -------------------~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~-~L- 472 (559)
T KOG1155|consen 415 -------------------FYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV-RL- 472 (559)
T ss_pred -------------------HHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH-HH-
Confidence 77999999999999998 799999999999999999999999999998655433211 22
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-------hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-------QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-------~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|...-. .+++++|..+|++-++ .+|+. ..+...|+.-+.+.+++++|-.+..+++.-.+.
T Consensus 473 ---------akLye~---l~d~~eAa~~yek~v~~~~~eg~~~~~t-~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 473 ---------AKLYEE---LKDLNEAAQYYEKYVEVSELEGEIDDET-IKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ---------HHHHHH---HHhHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 221111 5678999999999888 45544 466777999999999999999999999988655
Q ss_pred -hHHHHHHHHHHhh
Q psy11738 308 -QEATKLLEKAKSY 320 (323)
Q Consensus 308 -~~~~~~l~~~~~~ 320 (323)
.|++-++.++.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 4555666666544
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1e-19 Score=171.43 Aligned_cols=235 Identities=14% Similarity=0.012 Sum_probs=190.7
Q ss_pred HHHhhhHHHh---hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 17 FLKKSDDLFE---EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 17 ~~~~a~~~~~---~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.+|...+. .+.+++|+.+++++ .+|+++.++..+|.+|..++..... ...+.+++|+..++++++++|+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----DKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----ccchHHHHHHHHHHHHHhcCCC
Confidence 4555554443 36788999999997 5999999999999998877653221 1145689999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.++..+|.++...|++. +|..+|+++++++|+++.+++.+|.++...|++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~------------------ 388 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYI----------VGSLLFKQANLLSPISADIKYYYGWNLFMAGQL------------------ 388 (553)
T ss_pred CHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH------------------
Confidence 9999999999999999998 899999999999999999999999999988765
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|+.+|+++++++|.+ +.++..++.++...|++++|+.++++++... |.+..... . ++..+.
T Consensus 389 --~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~-~----------la~~l~-- 452 (553)
T PRK12370 389 --EEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS-M----------QVMFLS-- 452 (553)
T ss_pred --HHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH-H----------HHHHHH--
Confidence 99999999999999997 5666667777888999999999999999875 55443211 1 111111
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
..|++++|+..+.+.....|+. ......++.+|...|+ .|...+++.++
T Consensus 453 -~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 453 -LKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred -hCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 1689999999999999888887 6778889999998885 67766666554
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1.5e-19 Score=179.57 Aligned_cols=273 Identities=17% Similarity=0.124 Sum_probs=176.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------cH------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------SD------ 68 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~~------ 68 (323)
..|.....+...+..+...|++++|+..+.++ ..|.+...++.++.+|...|++.... .+
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556677788899999999999999999987 58899999999999999888654311 00
Q ss_pred ---HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 69 ---ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 69 ---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
....+++++|+..++++++.+|.++.++..+|.++...|++. +|...|.++++.+|++..++..++.
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA----------KAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 012345566666666666666666666666666666666655 6666677777777777777777776
Q ss_pred HHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++...|++......+....... ...|++++|+..|++++...|++ .++..++.++...|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHH
Confidence 6666665532222111110000 12456666666666666666664 4556666666666666666
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+..++++++.+|++..... .++..+. ..|++++|+..|++++..+|++ +.++..+|.++...|+
T Consensus 756 ~~~~~~~l~~~~~~~~~~~-----------~la~~~~---~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRT-----------ALAELYL---AQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHHhCCCCHHHHH-----------HHHHHHH---HCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-
Confidence 6666666666666543211 1111111 1567777777777777777776 6777777777777777
Q ss_pred HHHHHHHHHhhCCCChhH
Q psy11738 292 EQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~~ 309 (323)
.+|+.++++++++.|++.
T Consensus 820 ~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 667777777777766543
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=7.7e-20 Score=158.98 Aligned_cols=221 Identities=15% Similarity=0.099 Sum_probs=168.0
Q ss_pred hccHHHHHHHHHhC--C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
.++.+.++..+..+ . .+..+..++.+|.+|...|+ +++|+..|+++++++|+++.++..+|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-------------RALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777766654 1 23447789999999988885 46699999999999999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 180 (323)
.++...|+++ +|...|+++++++|++..++.++|.+++..|++ ++|++.|
T Consensus 106 ~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~--------------------~eA~~~~ 155 (296)
T PRK11189 106 IYLTQAGNFD----------AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY--------------------ELAQDDL 155 (296)
T ss_pred HHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--------------------HHHHHHH
Confidence 9999999999 899999999999999999999999999988655 9999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH
Q psy11738 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA 259 (323)
Q Consensus 181 ~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A 259 (323)
+++++++|++ +.. .....+....+++++|+..++++.... |.... | .+.....+. ...+++
T Consensus 156 ~~al~~~P~~-~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~----------~---~~~~~~lg~---~~~~~~ 217 (296)
T PRK11189 156 LAFYQDDPND-PYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG----------W---NIVEFYLGK---ISEETL 217 (296)
T ss_pred HHHHHhCCCC-HHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccccH----------H---HHHHHHccC---CCHHHH
Confidence 9999999997 321 222234556789999999998776543 32211 0 011111121 112233
Q ss_pred HHHH----HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 260 LKYF----LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 260 l~~~----~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+..+ ..+.++.|.. ..+|+++|.+|..+|++++|+.+|++|++++|.+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 218 MERLKAGATDNTELAERL-CETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 4333 3444666666 68899999999999999999999999999987543
No 21
>KOG1173|consensus
Probab=99.85 E-value=9.2e-20 Score=161.35 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=181.9
Q ss_pred hhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHH-HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 5 EAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEII-WRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~-~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
+....-.+...-+..+++.++..++|.+.+.+.... .+|-+.+.+ +.+| ++..+|+... =+..
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~-------------Lf~l 300 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNK-------------LFLL 300 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccch-------------HHHH
Confidence 344445556666788999999999999999999987 477776665 4555 7888886432 3555
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
..+.++.+|+.+-.|+..|..|...+... +|+++|-|+-.+||.-..+|..+|..+...++.......+-
T Consensus 301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~s----------eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 301 SHKLVDLYPSKALSWFAVGCYYLMIGKYS----------EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCcH----------HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 56666777777777777777777766666 67777777777777777777777776666555411100000
Q ss_pred HH--hh-cC-----------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 162 NA--IF-DT-----------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 162 ~~--~~-~~-----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.+ ++ +. .....+.-|.++|..|+.+.|.+ +.++..+|.+....+.|.+|+.+|++++..-+....
T Consensus 371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 00 00 00 00122355556666666666655 455555565555556666666666555522111110
Q ss_pred h---hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 228 D---QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 228 ~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
. ..-...+++...++ .+++++||.+|++++.+.|.+ +.++-.+|.+|..+|+++.|+++|.++|-+
T Consensus 450 e~~~w~p~~~NLGH~~Rk----------l~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRK----------LNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred cccchhHHHHhHHHHHHH----------HhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 0 00112222222222 578999999999999999999 899999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHHh
Q psy11738 305 PAVQEA-TKLLEKAKS 319 (323)
Q Consensus 305 ~~~~~~-~~~l~~~~~ 319 (323)
.|++.. .++|+.+.+
T Consensus 519 ~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIE 534 (611)
T ss_pred CCccHHHHHHHHHHHH
Confidence 999855 578876644
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.2e-19 Score=175.19 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=189.4
Q ss_pred chhh--hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 9 TVSK--VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 9 ~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
..|. ....++..|..+.. +++.+|+..+.++ ..|++. ....+|.++...| ++++|+..+++
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~G-------------r~eeAi~~~rk 534 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVE-------------DYATALAAWQK 534 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCC-------------CHHHHHHHHHH
Confidence 3445 66667777777776 7888888877765 466654 3445555555555 45678999998
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
++...|.+ ..+..+|.++...|++. +|..+|.++++++|.+......++......|+
T Consensus 535 a~~~~p~~-~a~~~la~all~~Gd~~----------eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr------------ 591 (987)
T PRK09782 535 ISLHDMSN-EDLLAAANTAQAAGNGA----------ARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ------------ 591 (987)
T ss_pred HhccCCCc-HHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC------------
Confidence 88876654 45677888888888887 78889999999999887777766655555554
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+++|+.+|+++++++|+ +.++.++|.++.+.|++++|+.+|++++.++|++..... .++
T Consensus 592 --------~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~-----------nLG 650 (987)
T PRK09782 592 --------PELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA-----------ALG 650 (987)
T ss_pred --------HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHH
Confidence 49999999999999996 588999999999999999999999999999999875422 112
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
..+.. .|++++|+..|.+++.++|++ +.+++++|.++..+|++++|..+|+++++++|+.
T Consensus 651 ~aL~~---~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWD---SGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHH---CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 22222 689999999999999999998 8999999999999999999999999999999974
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=9.5e-19 Score=158.59 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
....+..|..+...|+ +++|+..++++++.+|+++.++..+|.++...|++. +|+..
T Consensus 35 ~~~~y~~g~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~ 91 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQ-------------PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVD----------RAIRI 91 (389)
T ss_pred ccHHHHHHHHHHhcCC-------------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHH----------HHHHH
Confidence 3345556777766664 466999999999999999999999999999999999 88889
Q ss_pred HHHHHccCCCC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcC
Q psy11738 126 MNKAIELKPDD----STTLFMLGMWCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQH 187 (323)
Q Consensus 126 ~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~ 187 (323)
+++++...+.. ..++..+|.++...|++......+...+... ...|++++|+..|+++++.+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 92 HQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 99998864433 3568899999999887743333222221100 13567777888888777776
Q ss_pred CCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 188 PLFY----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 263 (323)
Q Consensus 188 p~~~----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~ 263 (323)
|.+. ...+..+|.++...|++++|+.+|+++++.+|.+..... .++..+.. .|++++|+..|
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~la~~~~~---~g~~~~A~~~~ 237 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI-----------LLGDLALA---QGDYAAAIEAL 237 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH-----------HHHHHHHH---CCCHHHHHHHH
Confidence 6531 123456777777788888888888888777766543211 11122221 57888888888
Q ss_pred HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 264 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 264 ~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.++...+|++....+..++.+|...|++++|+..++++++..|+..
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 8888888765345667788888888888888888888888877654
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=2.2e-19 Score=182.52 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=202.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC--------------------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL-------------------- 66 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~-------------------- 66 (323)
..|.+....+..|..+...|++++|+..++++ .+|++..++..++.+|... +.....
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666777888889999999999999887 5888888888888876432 111100
Q ss_pred ----------cHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 67 ----------SDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 67 ----------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
......+++++|+..++++++++|+++.+++.+|.+|...|++. +|+..++++++++|++
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~----------~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS----------QADALMRRLAQQKPND 528 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCC
Confidence 00013467899999999999999999999999999999999998 8999999999999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHH--------------------h----hcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANA--------------------I----FDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~--------------------~----~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
+.+++.+|.++...++.......+..+ . ......|++++|+..++ ..|.+ +
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~-~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS-T 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC-c
Confidence 999999998776666442211111100 0 00123467788887765 57886 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
..++.+|.+|...|++++|+.+|++++..+|.+..... .++..+.. .|++++|+..|.+++...|+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~-----------~la~~~~~---~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL-----------GLIEVDIA---QGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---CCCHHHHHHHHHHHhccCCC
Confidence 88888999999999999999999999999998765432 11222222 68899999999999988888
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+ ...+..+|.++..+|++++|+.+|++++...|.
T Consensus 670 ~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 670 S-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred C-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 7 677888899999999999999999999887543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=5.8e-19 Score=173.41 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=199.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
.+..+..+...|++++|+..++++ ..|.....++.+|.++...|+ +++|+.++.+++..+|.+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd-------------~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN-------------GAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCCccHHH
Confidence 455566777899999999999987 444445567788888888774 466999999999999999887
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
...++..+...|++. +|...|.++++++|+ +.++..+|.++...|++ ++
T Consensus 579 ~~~La~~l~~~Gr~~----------eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~--------------------de 627 (987)
T PRK09782 579 YWWLHAQRYIPGQPE----------LALNDLTRSLNIAPS-ANAYVARATIYRQRHNV--------------------PA 627 (987)
T ss_pred HHHHHHHHHhCCCHH----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH--------------------HH
Confidence 776666666668888 899999999999996 99999999999998765 99
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCc
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSS 255 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 255 (323)
|+.+|+++++++|++ +.++.++|.++...|++++|+.+|+++++++|.+..... . ++.++.. .|+
T Consensus 628 A~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~----n-------LA~al~~---lGd 692 (987)
T PRK09782 628 AVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR----Q-------LAYVNQR---LDD 692 (987)
T ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH----H-------HHHHHHH---CCC
Confidence 999999999999998 699999999999999999999999999999998875422 1 1222222 789
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+++|+..|++++.++|+. +.+.+..|.+.....++..|.+.+.++..+.|..-
T Consensus 693 ~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999998 89999999999999999999999999999988743
No 26
>KOG1125|consensus
Probab=99.84 E-value=1.3e-19 Score=161.06 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=189.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
++-|++|..+++.|...+|.-.++.+ ++|.++++|.+||.+-...++-.. |+..++++++++|+|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~-------------ai~AL~rcl~LdP~N 352 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQN-------------AISALRRCLELDPTN 352 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHH-------------HHHHHHHHHhcCCcc
Confidence 44589999999999999999999987 799999999999999887775433 899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
-++...||..|...|.-. +|..++++=|...|........ ...+...... +.+....
T Consensus 353 leaLmaLAVSytNeg~q~----------~Al~~L~~Wi~~~p~y~~l~~a-----~~~~~~~~~~--------s~~~~~~ 409 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQN----------QALKMLDKWIRNKPKYVHLVSA-----GENEDFENTK--------SFLDSSH 409 (579)
T ss_pred HHHHHHHHHHHhhhhhHH----------HHHHHHHHHHHhCccchhcccc-----CccccccCCc--------CCCCHHH
Confidence 999999999999988776 7888898888888764221110 0000000000 0000011
Q ss_pred HHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 173 YEEALKYFLEAEKQHP--LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
...-.+.|..+-...| .+ +++...||.+|...|+|++|++||+.|+...|++..... +++.++
T Consensus 410 l~~i~~~fLeaa~~~~~~~D-pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN-----------RLGAtL--- 474 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKID-PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN-----------RLGATL--- 474 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCC-hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH-----------HhhHHh---
Confidence 2445677777777777 45 689999999999999999999999999999999864322 222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+..+.++|+..|.+|+++.|++ .+++++||.+++.+|.|++|+++|-.||.+.++
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 12567899999999999999999 899999999999999999999999999999776
No 27
>KOG1155|consensus
Probab=99.81 E-value=1e-17 Score=145.24 Aligned_cols=235 Identities=17% Similarity=0.155 Sum_probs=162.4
Q ss_pred hhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 21 SDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+..+....+.++++...... ..|++.-+.-..|.++++..+ ++.|+..|+...+.||-..+-.-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD-------------fD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD-------------FDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHhcCCCcchhHH
Confidence 33444455777887766654 388888888888888888775 46699999999999998776555
Q ss_pred HHHHHHHHhhcccch------------------------HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 98 WLAVILNEKATLEGT------------------------KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+..+++...+-... ..-.+..++|+.+|++|++++|....+|..+|.=|..+.+.
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 555555554442100 00124455677777777777777777777777777777665
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
..|+..|++|++++|.++ .+|+.||.+|..++-+.=|+-+|++|..+-|+|.....
T Consensus 381 --------------------~AAi~sYRrAvdi~p~Dy-RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~--- 436 (559)
T KOG1155|consen 381 --------------------HAAIESYRRAVDINPRDY-RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV--- 436 (559)
T ss_pred --------------------HHHHHHHHHHHhcCchhH-HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH---
Confidence 777777777777777774 77777777777777777777777777777777654321
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.++.++. ..++.++|+.+|++++...... ..++..||..|.++++.++|..+|++-++.
T Consensus 437 --------aLG~CY~---kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 437 --------ALGECYE---KLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred --------HHHHHHH---HhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1111111 1567777777777777776665 567777777777777777777777777664
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=9.1e-18 Score=140.32 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK 123 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 123 (323)
..+..+..+|.+|...|+ +++|+..++++++.+|.++.++..+|.++...|++. +|.
T Consensus 29 ~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~----------~A~ 85 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD-------------LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE----------KAE 85 (234)
T ss_pred cHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH----------HHH
Confidence 346788888999988774 567999999999999999999999999999999998 899
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKT 201 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~ 201 (323)
+.+.++++++|.++.++..+|.++...|++ ++|+..|.+++... |.. ...+..+|.+
T Consensus 86 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 144 (234)
T TIGR02521 86 DSFRRALTLNPNNGDVLNNYGTFLCQQGKY--------------------EQAMQQFEQAIEDPLYPQP-ARSLENAGLC 144 (234)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhccccccc-hHHHHHHHHH
Confidence 999999999999999999999999888765 99999999999863 343 4678899999
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 281 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~l 281 (323)
+...|++++|..++++++..+|.+..... .++...+. .|++++|+..+.+++...|+. +..+..+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 209 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLL-----------ELAELYYL---RGQYKDARAYLERYQQTYNQT-AESLWLG 209 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 99999999999999999999988654321 12222222 689999999999999998877 6778889
Q ss_pred HHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 282 GKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.++...|+.++|..+.+.+....|
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999888766544
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=5.7e-17 Score=158.30 Aligned_cols=272 Identities=10% Similarity=0.004 Sum_probs=206.1
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|.........|..+...|++++|+..++++ .+|.+++++..++.++...|+ +++|+..+++++
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~-------------~~eA~~~l~~~l 110 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ-------------YDEALVKAKQLV 110 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHH
Confidence 34555666788899999999999999999997 589999999999999988774 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH-----------
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW----------- 155 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~----------- 155 (323)
+.+|+++. +..+|.++...|++. +|...++++++++|+++.++..+|.++...+....
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~----------~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHW----------DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 99999999 999999999999998 89999999999999999999999887764443220
Q ss_pred -----------------------------H---HHHHH---HHhh---------------------cCCCCCCHHHHHHH
Q psy11738 156 -----------------------------Y---QRKIA---NAIF---------------------DTLPTSSYEEALKY 179 (323)
Q Consensus 156 -----------------------------~---~~~~~---~~~~---------------------~~~~~~~~~~A~~~ 179 (323)
+ .+.+. ..+. .....+++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 11110 0000 01234678999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh---hh----hhhcchhHH-------------
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD---QC----FEITDMPWY------------- 239 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---~~----~~~~~~~~~------------- 239 (323)
|+++++..|..+..+...+|.+|..+|++++|+.+|++++..+|.+... .. ..+....-+
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9999998654322345557999999999999999999999988766211 00 000000000
Q ss_pred ----------------------HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 240 ----------------------QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 240 ----------------------~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
....+..+ ...|++++|+..+.+++...|++ +.++..+|.++...|++++|+..
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l---~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVA---KYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 00111111 12578999999999999999998 79999999999999999999999
Q ss_pred HHHhhCCCChh
Q psy11738 298 LEMTKNYPAVQ 308 (323)
Q Consensus 298 ~~~al~~~~~~ 308 (323)
+++++++.|++
T Consensus 416 l~~al~l~Pd~ 426 (765)
T PRK10049 416 LKKAEVLEPRN 426 (765)
T ss_pred HHHHHhhCCCC
Confidence 99999998885
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=3.2e-16 Score=153.10 Aligned_cols=281 Identities=12% Similarity=0.037 Sum_probs=182.2
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|......+..+..+...|++++|+..++++ .+|+++. +..+|.++...|+ +++|+..+++++
T Consensus 78 ~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~-------------~~~Al~~l~~al 143 (765)
T PRK10049 78 LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR-------------HWDELRAMTQAL 143 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC-------------HHHHHHHHHHHH
Confidence 44666666778888999999999999999997 5999999 9999999988875 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHH------------------------------------HhHHHHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARI------------------------------------QQLETIKHHMNKAI 130 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~a~~~~~~al 130 (323)
+++|+++.++..++.++...+..+.+...+ ....+|++.+++++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 999999999999888876555443211000 01133444555555
Q ss_pred ccCCCChhH------------------------------------------HHHHhhHHHHhcCCcHHHHHHHHHhhcC-
Q psy11738 131 ELKPDDSTT------------------------------------------LFMLGMWCFEITDMPWYQRKIANAIFDT- 167 (323)
Q Consensus 131 ~l~p~~~~~------------------------------------------~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 167 (323)
+..|.++.. ...+|.++...+++......+...+...
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 443332221 2223333444433322211111111100
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCCc--------------hhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 168 -----------------LPTSSYEEALKYFLEAEKQHPLF--------------YSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 168 -----------------~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
...+++++|+..++++.+..|.. ...++..++.++...|++++|+..++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12345555555555555544410 01234455555555555555555555
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
+++...|.+.... ..++..+. ..|++++|+..+++++.++|++ ...++.+|.++...|++++|..
T Consensus 384 ~al~~~P~n~~l~-----------~~lA~l~~---~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 384 ELAYNAPGNQGLR-----------IDYASVLQ---ARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHHhCCCCHHHH-----------HHHHHHHH---hcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCCHHHHHH
Confidence 5555555553211 11222222 2688999999999999999998 7899999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHH
Q psy11738 297 YLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 297 ~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.++++++..|++-....+.+..
T Consensus 449 ~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 449 LTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988877776655
No 31
>KOG1173|consensus
Probab=99.78 E-value=4.7e-17 Score=144.33 Aligned_cols=222 Identities=20% Similarity=0.240 Sum_probs=161.7
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
-.++++.+-..++.++..+ +|++-+..++..++.+|-++.++-..-.++..+|+.. +
T Consensus 240 l~~~~dll~~~ad~~y~~c-------------~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n----------~ 296 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGC-------------RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSN----------K 296 (611)
T ss_pred hhhcHHHHHHHHHHHHHcC-------------hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccc----------h
Confidence 4567888888888888888 4567899999999999999987755444888888776 4
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
....-.+..+..|+.+..|+..|..|+..+.+ .+|.++|.|+..++|.+ ..+|...|+.
T Consensus 297 Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~--------------------seARry~SKat~lD~~f-gpaWl~fghs 355 (611)
T KOG1173|consen 297 LFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY--------------------SEARRYFSKATTLDPTF-GPAWLAFGHS 355 (611)
T ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc--------------------HHHHHHHHHHhhcCccc-cHHHHHHhHH
Confidence 44556788899999999999999999998766 88888888888888886 6788888888
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhh-hhhcchhHHHHHHHHHhhcc-------C------------CCCcHHHHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQC-FEITDMPWYQRKIANAIFDT-------L------------PTSSYEEALK 261 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~-------~------------~~~~~~~Al~ 261 (323)
|...|..++|+.+|.+|-++-|....-.. ..+--+.--..++|..+++. . ..+.|.+|+.
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH
Confidence 88888888888888887777665532111 00000000000112111111 0 1357899999
Q ss_pred HHHHHHhhC----Cc--chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 262 YFLEAEKQH----PL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 262 ~~~~a~~~~----p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|+.++..- +. .+...+.+||.+|.+++++++|+.+|+++|.+.|.
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999988332 22 23456899999999999999999999999999776
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=1.1e-18 Score=151.09 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=57.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--E--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
+..+..|..++..|++++|+..+++. . .|++++++..+|.....+++.. +|+..+++++..+|
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~-------------~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYD-------------EAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------cccccccccccccc
Confidence 45567799999999999999999653 2 5888998888888888777654 46777777777777
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.++..+..++.+ ...+++. +|.+.+.++.+..+ ++..+..+..++...+++
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~----------~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~----------------- 126 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPE----------EALKLAEKAYERDG-DPRYLLSALQLYYRLGDY----------------- 126 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-H-----------------
T ss_pred cccccccccccc-ccccccc----------cccccccccccccc-ccchhhHHHHHHHHHhHH-----------------
Confidence 777766666655 4556665 45555555554432 334444444444444333
Q ss_pred CCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 171 SSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
+++...+.++.... |.+ +..++.+|.++.+.|++++|+.+|+++++++|++..... .+.|. +
T Consensus 127 ---~~~~~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~----~l~~~-------l- 190 (280)
T PF13429_consen 127 ---DEAEELLEKLEELPAAPDS-ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN----ALAWL-------L- 190 (280)
T ss_dssp ---HHHHHHHHHHHH-T---T--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH----HHHHH-------H-
T ss_pred ---HHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH----HHHHH-------H-
Confidence 55555555544432 333 345555566666666666666666666666555543211 01111 1
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
...|+++++...+.......|++ +..+..+|.+|..+|++++|+.+|++++..+|+
T Consensus 191 --i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 191 --IDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp --CTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred --HHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhcccccccccccccccccccccc
Confidence 12444554444444444443443 344455555555555555555555555555443
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=9.4e-17 Score=127.99 Aligned_cols=207 Identities=18% Similarity=0.162 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
.++...+|.-|...|+. ..|..-+++||++||++..+|..++.+|...|+.+ .|.+.
T Consensus 35 a~arlqLal~YL~~gd~-------------~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~----------~A~e~ 91 (250)
T COG3063 35 AKARLQLALGYLQQGDY-------------AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND----------LADES 91 (250)
T ss_pred HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------hHHHH
Confidence 45677788888877765 55899999999999999999999999999999998 78889
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYM 203 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~ 203 (323)
|.+|++++|++.+++.+.|.+++..|.+ ++|...|++|+. +|..+ +.++-++|.|-.
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~--------------------~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRP--------------------EEAMQQFERALA-DPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCCh--------------------HHHHHHHHHHHh-CCCCCCcchhhhhhHHHHh
Confidence 9999999999999999999999998654 999999999999 55532 477999999999
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
+.|+++.|.++|++++.++|+...... . ++...+ ..|+|-.|..++++-...-+-. +.++.....
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l-~----------~a~~~~---~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~ir 215 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALL-E----------LARLHY---KAGDYAPARLYLERYQQRGGAQ-AESLLLGIR 215 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHH-H----------HHHHHH---hcccchHHHHHHHHHHhccccc-HHHHHHHHH
Confidence 999999999999999999999876422 1 122222 2688999999999877776644 566656666
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+-...|+-+.|-+|=.+.....|.++..
T Consensus 216 iak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 216 IAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 7778999999999988888888876654
No 34
>KOG2076|consensus
Probab=99.77 E-value=5.2e-16 Score=144.34 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=195.8
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....++.+..++.+|+.++..|++++|..++..+ .+|.++.+++.||.+|-..|+. ++++.++-.
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~-------------eK~l~~~ll 198 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI-------------EKALNFWLL 198 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH-------------HHHHHHHHH
Confidence 3444555788999999999999999999999998 6999999999999999998854 558888888
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
|.-++|++.+.|..++.....+|++. +|+-+|.+||+.+|.+....+....+|.++|+..........++
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~----------qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNIN----------QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHH----------HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 88888988888888888888888777 88888999999999888888888888888886622111111100
Q ss_pred ---------------hcC----CCCCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--C
Q psy11738 165 ---------------FDT----LPTSSYEEALKYFLEAEKQHPLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--P 222 (323)
Q Consensus 165 ---------------~~~----~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~ 222 (323)
+.. ...++-+.|++.++.++....+- ..+.+..++.++....+++.|......-... .
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 000 01112266777777766632221 1234666777777777777777776555441 1
Q ss_pred CCCchh-------------------hhh--h------------------------------hcchhHHHHHHHHHhhccC
Q psy11738 223 VKQDKD-------------------QCF--E------------------------------ITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 223 ~~~~~~-------------------~~~--~------------------------------~~~~~~~~~~~a~~~~~~~ 251 (323)
+++.+. ..+ . .....-....++.++.
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~--- 425 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT--- 425 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH---
Confidence 111000 000 0 0001111223344433
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+.|+|.+|+.+|..++...+...+..|..+|.||..+|.+++|+.+|++++.+.|.+-.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 36889999999999998888765678999999999999999999999999999887443
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.6e-16 Score=132.79 Aligned_cols=205 Identities=18% Similarity=0.174 Sum_probs=169.8
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.........+..|..++..|++++|+..++++ .+|++..++..+|.+|...|+ +++|+.++++++
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al 92 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-------------LEKAEDSFRRAL 92 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 33444566788999999999999999999987 589999999999999998885 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--CCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--PDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+.+|.++.++..+|.++...|++. +|...+.+++... |.....+..+|.++...|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------- 151 (234)
T TIGR02521 93 TLNPNNGDVLNNYGTFLCQQGKYE----------QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------- 151 (234)
T ss_pred hhCCCCHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH-----------
Confidence 999999999999999999999988 8889999999864 55677889999999888765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+..|.++++.+|++ ..++..+|.++...|++++|+.++++++...|.+..... .. +
T Consensus 152 ---------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~----------~ 210 (234)
T TIGR02521 152 ---------DKAEKYLTRALQIDPQR-PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW-LG----------I 210 (234)
T ss_pred ---------HHHHHHHHHHHHhCcCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HH----------H
Confidence 99999999999999997 689999999999999999999999999998766543221 11 1
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.... ..|+.++|..+...+....|
T Consensus 211 ~~~~---~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 211 RIAR---ALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHH---HHhhHHHHHHHHHHHHhhCc
Confidence 1111 15778888888777666544
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=5e-16 Score=123.90 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+...+|.-|...|++. .|+.-+++|++.||+++.+|..++.+|...|..
T Consensus 35 a~arlqLal~YL~~gd~~----------~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~------------------- 85 (250)
T COG3063 35 AKARLQLALGYLQQGDYA----------QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN------------------- 85 (250)
T ss_pred HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-------------------
Confidence 346677888888888888 889999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+.|-+.|++|++++|++ .+++.+.|..++.+|+|++|..+|++|+.. |....-. -.+.+++++.. .
T Consensus 86 -~~A~e~YrkAlsl~p~~-GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s-~t~eN~G~Cal----------~ 151 (250)
T COG3063 86 -DLADESYRKALSLAPNN-GDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPS-DTLENLGLCAL----------K 151 (250)
T ss_pred -hhHHHHHHHHHhcCCCc-cchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcc-hhhhhhHHHHh----------h
Confidence 99999999999999998 799999999999999999999999999874 4432211 12233333322 2
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
.|+++.|.++|+++++.+|++ +.....++..++..|++-.|..++++-...-+
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 789999999999999999999 78899999999999999999999999876633
No 37
>KOG1174|consensus
Probab=99.74 E-value=3.1e-15 Score=128.39 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=214.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+..+--.....+..++-.++...|+..+-.+ ..|+|+..+-.+|.+++..|+.. +|+..|+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~-------------~a~~~Fe 256 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF-------------QAEDIFS 256 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch-------------HHHHHHH
Confidence 344455556667777788888888877655443 58999999999999999999764 4899999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHH------------------------HHhHHHHHHHHHHHHccCCCChhH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKAR------------------------IQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
++..+||.+..+--.+|.++...|+++....- -..+..|..+-+|+|.++|.+..+
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a 336 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA 336 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence 99999999999999999999998887643221 123556778889999999999999
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+...|.++..++.. ++|+-+|+.|..+.|.. ...|..|-++|.-.|++.+|...-+.+.
T Consensus 337 lilKG~lL~~~~R~--------------------~~A~IaFR~Aq~Lap~r-L~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 337 LILKGRLLIALERH--------------------TQAVIAFRTAQMLAPYR-LEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHhccHHHHhccch--------------------HHHHHHHHHHHhcchhh-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 99999999988766 99999999999999997 6999999999999999999999999998
Q ss_pred CCCCCCchhhhhh-------hcchhHHHH------------------HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch
Q psy11738 220 NYPVKQDKDQCFE-------ITDMPWYQR------------------KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 274 (323)
Q Consensus 220 ~~~~~~~~~~~~~-------~~~~~~~~~------------------~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~ 274 (323)
..-|++....... -..+.-.-+ .+|... .-.|++..++..+++.+...|+.
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~---~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC---QVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH---HhhCccchHHHHHHHHHhhcccc-
Confidence 8887775432200 000000000 111111 12578899999999999999985
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HHHHHHH
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KLLEKAK 318 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 318 (323)
..+..||.++...+.+++|+++|..|+.++|.++.. +.|....
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 678899999999999999999999999999998875 6655544
No 38
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=6.4e-16 Score=134.52 Aligned_cols=210 Identities=8% Similarity=-0.084 Sum_probs=171.5
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVIL 103 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 103 (323)
..+++++|+..+.++ .+|++..++...+.++..++. .+++++.+++++++.+|++..++.+.+.++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~------------~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA------------DLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch------------hHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 357899999999987 599999999999999987752 357799999999999999999999999999
Q ss_pred HHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy11738 104 NEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183 (323)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 183 (323)
..++... ..++.++++++++++|+|..+|..+|.++...+.+ ++++.++.++
T Consensus 117 ~~l~~~~--------~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~--------------------~eeL~~~~~~ 168 (320)
T PLN02789 117 EKLGPDA--------ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW--------------------EDELEYCHQL 168 (320)
T ss_pred HHcCchh--------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH--------------------HHHHHHHHHH
Confidence 8877531 11567889999999999999999999998887654 9999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHc---CCH----HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc-cCCCCc
Q psy11738 184 EKQHPLFYSQNVLMLGKTYMRL---ENY----EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD-TLPTSS 255 (323)
Q Consensus 184 l~~~p~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 255 (323)
++++|++ ..+|...|.++..+ |.+ ++++++..+++.++|++.....+.. - .+.. ..+.++
T Consensus 169 I~~d~~N-~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~---------~--ll~~~~~~l~~ 236 (320)
T PLN02789 169 LEEDVRN-NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR---------G--LFKDDKEALVS 236 (320)
T ss_pred HHHCCCc-hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH---------H--HHhcCCccccc
Confidence 9999998 69999999998876 333 5799999999999999976643211 1 1111 012356
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 288 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~ 288 (323)
..+|++.+.+++..+|.. ..++-.|+.+|...
T Consensus 237 ~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCc-HHHHHHHHHHHHhh
Confidence 678999999999999987 78888999999863
No 39
>KOG2002|consensus
Probab=99.74 E-value=3.9e-16 Score=146.12 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=198.0
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE-DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
....|+.+..++.+|...|+.|+|..|+.+|+++ ..|. -++....+|.|...++. .+.|+..|+
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~-------------~~~a~~a~~ 223 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM-------------SEKALLAFE 223 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc-------------hhhHHHHHH
Confidence 5678889999999999999999999999999986 3332 24445566767666664 356999999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
++++++|.++.+...+|.+-....+.. ....+...+.++..++|.||.+...|+.-++-.+++..........
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~-------s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSD-------SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999999999888887766555443 2336778999999999999999999999999999885443333322
Q ss_pred hhcC-----------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 164 IFDT-----------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 164 ~~~~-----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+..+ -..|+|++|..+|..+++.+|++....++.||.+|+..|+++.|+.+|++.++..|++.
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 2222 14678888888888888888887557788888888888888888888888888888877
Q ss_pred hhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 227 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.. . +++.+.. .+ .....-+.|..+..+++...|.+ ..+|..+|.+|.. ++...++.+|.+|+.+
T Consensus 377 etm~-i---LG~Lya~-----~~-~~~~~~d~a~~~l~K~~~~~~~d-~~a~l~laql~e~-~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 377 ETMK-I---LGCLYAH-----SA-KKQEKRDKASNVLGKVLEQTPVD-SEAWLELAQLLEQ-TDPWASLDAYGNALDI 442 (1018)
T ss_pred HHHH-H---HHhHHHh-----hh-hhhHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHh-cChHHHHHHHHHHHHH
Confidence 6533 1 1111100 00 12345678888888888888888 6888888887765 4455558888888743
No 40
>KOG1129|consensus
Probab=99.73 E-value=2.2e-16 Score=131.70 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=198.3
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
.+.|..++..|-+++|...++.. .....+++...++++|..+.+. ..|+..+...++..|.+....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP-------------~~AL~~~~~gld~fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQP-------------ERALLVIGEGLDSFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccH-------------HHHHHHHhhhhhcCCchhhhh
Confidence 45788888999999999999886 5667788888999999887743 558999999999999999998
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
.-.+.++..+++.+ +|.++|+.+++++|.|.++.-.+|.-|+..++. +-|
T Consensus 294 ~g~ARi~eam~~~~----------~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P--------------------E~A 343 (478)
T KOG1129|consen 294 LGQARIHEAMEQQE----------DALQLYKLVLKLHPINVEAIACIAVGYFYDNNP--------------------EMA 343 (478)
T ss_pred hhhHHHHHHHHhHH----------HHHHHHHHHHhcCCccceeeeeeeeccccCCCh--------------------HHH
Confidence 88899999888888 889999999999999999988888888777766 999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc--hhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD--KDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+.+|++.+++.-.+ +..+.++|.|+..-+++|-++..|++|++...+.. .+..+.++-. ....|
T Consensus 344 lryYRRiLqmG~~s-peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v-------------aV~iG 409 (478)
T KOG1129|consen 344 LRYYRRILQMGAQS-PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV-------------AVTIG 409 (478)
T ss_pred HHHHHHHHHhcCCC-hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee-------------EEecc
Confidence 99999999998887 68899999999999999999999999998854332 2222222211 12368
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++.-|-..|+-++.-+|+. ..++.+||..-...|+.++|..++..|....|+
T Consensus 410 D~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred chHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8999999999999999998 799999999999999999999999999988887
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.1e-17 Score=143.02 Aligned_cols=233 Identities=16% Similarity=0.104 Sum_probs=106.7
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+.+..-+...|+.....++++.|+..++++ .++.++..+.+++.. ...+ ++++|+.+++++.+.
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~-------------~~~~A~~~~~~~~~~ 106 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG-------------DPEEALKLAEKAYER 106 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccc-------------ccccccccccccccc
Confidence 344444455777778899999999999997 366666666666665 3333 556799999999887
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+ ++..+.....++...+++. ++.+.+.++.... |.++..+..+|.++...|+.
T Consensus 107 ~~-~~~~l~~~l~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~------------- 162 (280)
T PF13429_consen 107 DG-DPRYLLSALQLYYRLGDYD----------EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP------------- 162 (280)
T ss_dssp ------------H-HHHTT-HH----------HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-------------
T ss_pred cc-ccchhhHHHHHHHHHhHHH----------HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-------------
Confidence 75 5666666677777777777 6677777766655 67889999999999998766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
++|+..|+++++++|++ +.+...++.++...|+++++...++......|.+..... . ++.+
T Consensus 163 -------~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~-~----------la~~ 223 (280)
T PF13429_consen 163 -------DKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD-A----------LAAA 223 (280)
T ss_dssp -------HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH-H----------HHHH
T ss_pred -------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH-H----------HHHH
Confidence 99999999999999998 699999999999999999988888887776666553211 1 1222
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++. .|++++|+.+|.+++..+|++ +..+..+|.++...|+.++|..++.+++..
T Consensus 224 ~~~---lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 224 YLQ---LGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHH---HT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT------------------
T ss_pred hcc---ccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 222 578999999999999999999 799999999999999999999999998754
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=2.1e-15 Score=131.15 Aligned_cols=219 Identities=9% Similarity=-0.030 Sum_probs=153.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+..+..++..|..+...|++++|+..++++ .+|+++.+++.+|.++...|+ +++|+..+++++++
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~Al~l 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-------------FDAAYEAFDSVLEL 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHh
Confidence 344566889999999999999999999987 599999999999999999885 46699999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+++.++.++|.++...|++. +|++.|+++++++|+++.....+ .+....
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~~-~l~~~~------------------ 178 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYE----------LAQDDLLAFYQDDPNDPYRALWL-YLAESK------------------ 178 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHH-HHHHcc------------------
Confidence 9999999999999999999999 89999999999999998421111 111222
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH--HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ--AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
+++++|+..|.++....+.. ... .+.++...|+..+ ++..+.+++...+....... . +|+ .++..
T Consensus 179 --~~~~~A~~~l~~~~~~~~~~-~~~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~----e-a~~--~Lg~~ 245 (296)
T PRK11189 179 --LDPKQAKENLKQRYEKLDKE-QWG---WNIVEFYLGKISEETLMERLKAGATDNTELAERLC----E-TYF--YLAKY 245 (296)
T ss_pred --CCHHHHHHHHHHHHhhCCcc-ccH---HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH----H-HHH--HHHHH
Confidence 34599999998877653332 122 3555566676644 34334433333222111100 0 122 22222
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~ 287 (323)
+. ..|++++|+.+|++++.++|.+.....+.+......
T Consensus 246 ~~---~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 246 YL---SLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HH---HCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 22 278999999999999999974435555544444443
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.7e-14 Score=131.30 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=201.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.....+.+|-..+..|+++.|...+.+. ..|+..-.+...|+++...|+. +.|..++.++.+..|
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~-------------~~A~~~l~~a~~~~p 149 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE-------------ARANQHLEEAAELAG 149 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCC
Confidence 4455677888888899999999999887 3666677777888999888854 558999999988888
Q ss_pred CcH-HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 91 DHY-AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
++. .+....+.++...|+++ .|...+++.++..|+++.++..++.++...|++......+........
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~----------~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELH----------AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 875 45555688888888888 788889999999999999999999999999888544333333222110
Q ss_pred -----------------CCCCHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 -----------------PTSSYEEALKYFLEAEKQHP----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 -----------------~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
..+..+++...+.++.+..| ++ +..+..++..+...|++++|.+.++++++..|++..
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~-~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN-IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 00111333446777777777 34 588999999999999999999999999999998864
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh--hhhHHHHHHHHHhcCHHHHHHHHH--HhhC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQAAYYLE--MTKN 303 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~--~~~~~lg~~y~~~g~~~~A~~~~~--~al~ 303 (323)
.....+. .+.....++.+.++..++++++.+|++ + .....+|.++...|++++|.++|+ ++++
T Consensus 299 ~~~~~l~------------~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 299 ISLPLCL------------PIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred chhHHHH------------HhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 3110000 011122467789999999999999998 7 778899999999999999999999 6888
Q ss_pred CCChhHHHHHHH
Q psy11738 304 YPAVQEATKLLE 315 (323)
Q Consensus 304 ~~~~~~~~~~l~ 315 (323)
.+|+.+....+-
T Consensus 366 ~~p~~~~~~~La 377 (409)
T TIGR00540 366 EQLDANDLAMAA 377 (409)
T ss_pred cCCCHHHHHHHH
Confidence 888877643433
No 44
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=1.5e-15 Score=132.16 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=159.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKA-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.++|+..+.++++++|++..++...+.++..++ .+. +++..+++++..+|++..+|+..|.+....+..
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~----------eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLE----------EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHH----------HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 467999999999999999999999999999887 344 788999999999999999999999887766531
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
.+++++.++.++++++|++ ..+|...|.++...|++++++++++++++.+|.+..+..
T Consensus 123 ------------------~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~--- 180 (320)
T PLN02789 123 ------------------AANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN--- 180 (320)
T ss_pred ------------------hhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH---
Confidence 1267899999999999999 599999999999999999999999999999999976533
Q ss_pred cchhHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCCh
Q psy11738 234 TDMPWYQRKIANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~--~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.....-.+. ......++++.+..+++.++|++ ..+|.+++.++.. +++..+|.+.+.+++...|.
T Consensus 181 ------~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N-~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 181 ------QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN-ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred ------HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 33322111100 00122467899999999999999 7999999999988 56677899999999887665
No 45
>KOG2003|consensus
Probab=99.69 E-value=5.4e-15 Score=128.40 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=152.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHhcccCCCC---------cH----------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE-DVEIIWRLVRVKYNLATHSSSL---------SD---------- 68 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~la~~y~~~~~~~~~~---------~~---------- 68 (323)
+-...--+.++-.+++.|+++.|+++++-. .+.. ...+-..++..++..|-..... ..
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 333344577899999999999999988765 2222 2233445555555554321100 00
Q ss_pred ----HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHh
Q psy11738 69 ----ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144 (323)
Q Consensus 69 ----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg 144 (323)
--..|.+++|.++|+.|+..+..-.++++++|..+..+|+++ +|.++|-+...+--++...++.++
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld----------eald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD----------EALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH----------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 002344555555555555555555555555555555555555 555555555555555555555555
Q ss_pred hHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+|-.+.+. ..|++++-.+..+-|++ +.++..||..|-+.|+-.+|.+++-......|-
T Consensus 566 niye~led~--------------------aqaie~~~q~~slip~d-p~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 566 NIYELLEDP--------------------AQAIELLMQANSLIPND-PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHhhCH--------------------HHHHHHHHHhcccCCCC-HHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 555444443 55666666666666665 455666666666666666666665555555554
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+.+.. .|.-.. + .++.=+++|+.+|+++.-+.|+. .....+++.|+.+.|+|+.|++.|+..-.-
T Consensus 625 nie~i-------ewl~ay----y---idtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 625 NIETI-------EWLAAY----Y---IDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred chHHH-------HHHHHH----H---HhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 43321 122111 1 12344789999999999999998 677899999999999999999999998766
Q ss_pred CCh
Q psy11738 305 PAV 307 (323)
Q Consensus 305 ~~~ 307 (323)
.|.
T Consensus 690 fpe 692 (840)
T KOG2003|consen 690 FPE 692 (840)
T ss_pred Ccc
Confidence 555
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.8e-14 Score=128.45 Aligned_cols=261 Identities=10% Similarity=0.055 Sum_probs=184.3
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRL-VRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l-a~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.....+.+|-..+..|+++.|...+.+. ..++++..++.+ +++....|+ ++.|..++.++.+.+|
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~-------------~~~A~~~l~~A~~~~~ 149 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGD-------------EARANQHLERAAELAD 149 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCC
Confidence 4455677888888899999999888876 444455555555 455466664 4669999999999999
Q ss_pred CcHHHH-HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 91 DHYAIH-KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
++.-+. ...+.++...|+++ .|...++++.+.+|+++.++..++.++...|++......+........
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~----------~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENH----------AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 875433 34478888888888 888999999999999999999999999999888554433222221110
Q ss_pred ---------------------CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 ---------------------PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 ---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...+-+...+.++..-+..|++ +.+...++..+...|+.++|...++++++..|+. .
T Consensus 220 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-~ 297 (398)
T PRK10747 220 DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE-R 297 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-H
Confidence 0000111222222222234555 5788899999999999999999999999854432 1
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
... ++.....++.++++..+++.++.+|++ +..++.+|.++...|++++|.++|++++++.|+
T Consensus 298 l~~----------------l~~~l~~~~~~~al~~~e~~lk~~P~~-~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 298 LVL----------------LIPRLKTNNPEQLEKVLRQQIKQHGDT-PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHH----------------HHhhccCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 100 112223577888888888888888888 788888899999999999999999998888888
Q ss_pred hHHHHHHH
Q psy11738 308 QEATKLLE 315 (323)
Q Consensus 308 ~~~~~~l~ 315 (323)
....-.+.
T Consensus 361 ~~~~~~La 368 (398)
T PRK10747 361 AYDYAWLA 368 (398)
T ss_pred HHHHHHHH
Confidence 76633333
No 47
>KOG1129|consensus
Probab=99.68 E-value=1.9e-16 Score=132.10 Aligned_cols=219 Identities=13% Similarity=0.088 Sum_probs=186.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.+-+.++.++.....+...++...|+..+..- ..|.++..+..+|+++..+++ .++|+++|+.++
T Consensus 251 ~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~-------------~~~a~~lYk~vl 317 (478)
T KOG1129|consen 251 TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ-------------QEDALQLYKLVL 317 (478)
T ss_pred hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh-------------HHHHHHHHHHHH
Confidence 34445556666777888889999999999876 699999999999999988874 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
+++|.|.++...+|..|..-++++ -|..+|.+.+.+.-.+++.+.++|.+|+..+.+
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE----------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~------------- 374 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPE----------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQI------------- 374 (478)
T ss_pred hcCCccceeeeeeeeccccCCChH----------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch-------------
Confidence 999999999999999898889998 899999999999999999999999999988765
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+-++..|++|+.. +|+..+++|++||.+...+||+.-|..+|+-++.-||++.+... +++...
T Consensus 375 -------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn----NLavL~---- 439 (478)
T KOG1129|consen 375 -------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN----NLAVLA---- 439 (478)
T ss_pred -------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH----hHHHHH----
Confidence 9999999999987 56666789999999999999999999999999999998866432 333322
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
...|+.++|..++..|..+.|+. ....++++.+-
T Consensus 440 ------~r~G~i~~Arsll~~A~s~~P~m-~E~~~Nl~~~s 473 (478)
T KOG1129|consen 440 ------ARSGDILGARSLLNAAKSVMPDM-AEVTTNLQFMS 473 (478)
T ss_pred ------hhcCchHHHHHHHHHhhhhCccc-cccccceeEEe
Confidence 22789999999999999999987 56666666443
No 48
>KOG2002|consensus
Probab=99.68 E-value=3.5e-15 Score=139.82 Aligned_cols=226 Identities=15% Similarity=0.225 Sum_probs=166.9
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-HHHHHHHHHHHHh
Q psy11738 30 FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY-AIHKWLAVILNEK 106 (323)
Q Consensus 30 ~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~ 106 (323)
++.|...+... ..|+|+-+++.-|.+.++.+ +|..|+.+|++++.++|... +.....|.|+..+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk-------------dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl 212 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKK-------------DYRGALKYYKKALRINPACKADVRIGIGHCFWKL 212 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc-------------cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhc
Confidence 57787777776 58889878777777777766 45669999999999998743 4556678888888
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
++.. .|+..|.+++.++|.+..++..||.+-....+. ..|..++..+.++..+
T Consensus 213 ~~~~----------~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-----------------~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 213 GMSE----------KALLAFERALQLDPTCVSALVALGEVDLNFNDS-----------------DSYKKGVQLLQRAYKE 265 (1018)
T ss_pred cchh----------hHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-----------------HHHHHHHHHHHHHHhh
Confidence 8888 788899999999999999999999887766554 2347777888888888
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
+|.+ |.++..|+..|+..|++..+.+....++........ .+. .+|+ ++.+. ...|+|++|..+|..+
T Consensus 266 n~~n-P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-----~ae-s~Y~--~gRs~---Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 266 NNEN-PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI-----KAE-SFYQ--LGRSY---HAQGDFEKAFKYYMES 333 (1018)
T ss_pred cCCC-cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH-----HHH-HHHH--HHHHH---HhhccHHHHHHHHHHH
Confidence 8887 677888888888888888888887777765322110 000 1111 22222 2267788888888888
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..+|+++.-.++.||+.|++.|++++|+.+|++.++..|+
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 88887765566777888888888888888888888877666
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=6.7e-15 Score=124.10 Aligned_cols=186 Identities=11% Similarity=0.001 Sum_probs=150.1
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
..++..+..++.+|..+...|++. +|+..|++++...|+++ .+++.+|.+++..+++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~---------- 86 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYT----------EAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY---------- 86 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------
Confidence 466778889999999999999999 89999999999999987 5789999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhCCCCCCchhhhh-
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQ---NVLMLGKTYMRL--------ENYEQAAYYLEMTKNYPVKQDKDQCF- 231 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~- 231 (323)
++|+..|+++++.+|++ +. +++.+|.++... |++++|++.|++++..+|.+......
T Consensus 87 ----------~~A~~~~~~~l~~~p~~-~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 87 ----------AEAIAAADRFIRLHPNH-PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred ----------HHHHHHHHHHHHHCcCC-CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 99999999999999986 44 689999999987 89999999999999999998643220
Q ss_pred -hh----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc--hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 232 -EI----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 232 -~~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+ .........++...+. .|++.+|+..|.+++...|+. .+.+++.+|.+|..+|++++|..+++.....
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 0000111123333332 689999999999999997763 1478999999999999999999998887655
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.|
T Consensus 233 ~~ 234 (235)
T TIGR03302 233 YP 234 (235)
T ss_pred CC
Confidence 54
No 50
>KOG0548|consensus
Probab=99.67 E-value=8.6e-14 Score=123.31 Aligned_cols=264 Identities=15% Similarity=0.108 Sum_probs=177.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
+.+.-.+++..+..|+|+.|+.++..+ .+|.|.-.+-...-+|.. ++.|.+|+....+.++++|.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-------------~~~~~~al~da~k~~~l~p~ 68 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-------------LGSYEKALKDATKTRRLNPD 68 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHH-------------HhhHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999999887 477665444444445544 44778899999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc---CC---------------
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT---DM--------------- 153 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~--------------- 153 (323)
.+.+|..+|..+..+|+++ +|+..|.+.|+.+|+|......|...+.... +.
T Consensus 69 w~kgy~r~Gaa~~~lg~~~----------eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYE----------EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred hhhHHHHhHHHHHhcccHH----------HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 9999999999999999999 8999999999999999988888877663220 00
Q ss_pred -------cH-----------------------HHHHHHHHhhcC------------------------------------
Q psy11738 154 -------PW-----------------------YQRKIANAIFDT------------------------------------ 167 (323)
Q Consensus 154 -------~~-----------------------~~~~~~~~~~~~------------------------------------ 167 (323)
+. +...... +.+.
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~-l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ-LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEE 217 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH-HhcCccccccccccccCCCCCCcccccCCCCCccchhHHH
Confidence 00 0000000 0000
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCCchhH-------------------------------------
Q psy11738 168 -----------------LPTSSYEEALKYFLEAEKQHPLFYSQ------------------------------------- 193 (323)
Q Consensus 168 -----------------~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------- 193 (323)
....++..|+++|.++++++ .+ ..
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~-it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TD-ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hh-hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 01235788888888888877 43 12
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC--Cchhhh-------------hhhcchhHHHHHHHHHhhccCCCC
Q psy11738 194 ----NVLMLGKTYMRLENYEQAAYYLEMTKNYPVK--QDKDQC-------------FEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 194 ----~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--~~~~~~-------------~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
++..+|..|..+++++.|+.+|++++...-+ ...... +.-...+--.+.-++..|. .|
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk---~g 372 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK---KG 372 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh---cc
Confidence 2223444555666777777777777655333 100000 0000111122223444444 57
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|..|+.+|.+|+..+|++ +..|.+.|.||..+|.+..|+...+++++++|.
T Consensus 373 dy~~Av~~YteAIkr~P~D-a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPED-ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred CHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 7888888888888888887 788888888888888888888888888888776
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=1.1e-15 Score=118.38 Aligned_cols=116 Identities=7% Similarity=-0.046 Sum_probs=108.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 79 YFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
...++++++++|++ ++.+|.++...|++. +|..+|.+++.++|.++.++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----- 74 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS----------RAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----- 74 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----
Confidence 56799999999986 567899999999998 899999999999999999999999999998766
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|.++++++|++ +.+++++|.++..+|++++|+..|++++.++|++...
T Consensus 75 ---------------~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 75 ---------------TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred ---------------HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999998 7999999999999999999999999999999998754
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=1.2e-14 Score=122.48 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=144.1
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV---EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~---~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
+..+..+...+..|..++..|++++|+..++++ ..|.++ .+++.+|.+|...|+ +++|+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-------------~~~A~~~~ 93 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-------------YAEAIAAA 93 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-------------HHHHHHHH
Confidence 456777888999999999999999999999987 466654 678999999988874 56799999
Q ss_pred HhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 83 YNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 83 ~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+++++.+|+++. +++.+|.++...... .....+...+|++.|++++..+|++..++..+..+....+........
T Consensus 94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (235)
T TIGR03302 94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDR--VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY 171 (235)
T ss_pred HHHHHHCcCCCchHHHHHHHHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 688889988765110 001112334899999999999999976653332221111110000011
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++...+ ..|++.+|+..|++++...|+. .+.+++.+|.++..+|++++|+.+++......|
T Consensus 172 ~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYL---KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHH---HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 111111 1256699999999999997764 247899999999999999999999988766544
No 53
>KOG1840|consensus
Probab=99.64 E-value=1.6e-14 Score=131.50 Aligned_cols=253 Identities=18% Similarity=0.158 Sum_probs=170.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILS 77 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~ 77 (323)
...|.........+..+...|+|+.|+..++.+ + +|.-......+|.+|..++.+..+ ...|++
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eA------v~ly~~ 266 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEA------VNLYEE 266 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHH------HHHHHH
Confidence 344555555666899999999999999988876 1 222233334477888777754332 444444
Q ss_pred HHHHHHhhc-cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-----CCC---hhHHHHHhhHHH
Q psy11738 78 AYFLVYNAL-PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-----PDD---STTLFMLGMWCF 148 (323)
Q Consensus 78 A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-----p~~---~~~~~~lg~~~~ 148 (323)
|+...+... +.+|.-+..+.++|.+|...|++. +|..++++|+++- +.. +..+..++.++.
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~----------EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFA----------EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChH----------HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 555444444 346777888999999999999999 6667777776653 222 334666677777
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----CCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.++.+ ++|+.++++++++- +++ .+..+.+||.+|..+|++++|.++|++|+++
T Consensus 337 ~~~~~--------------------Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 337 SMNEY--------------------EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred Hhcch--------------------hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 77655 99999999998871 222 2466899999999999999999999999987
Q ss_pred CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh-------CCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 222 PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-------HPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~-------~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
............+. ....++..++. .+++.+|-..|.++..+ +|+. ...+.+||.+|..+|+++.|
T Consensus 397 ~~~~~~~~~~~~~~---~l~~la~~~~~---~k~~~~a~~l~~~~~~i~~~~g~~~~~~-~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 397 LRELLGKKDYGVGK---PLNQLAEAYEE---LKKYEEAEQLFEEAKDIMKLCGPDHPDV-TYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHhcccCcChhhhH---HHHHHHHHHHH---hcccchHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHcccHHHH
Confidence 53332211111111 11123333332 34555666666655544 3444 46789999999999999999
Q ss_pred HHHHHHhhC
Q psy11738 295 AYYLEMTKN 303 (323)
Q Consensus 295 ~~~~~~al~ 303 (323)
+++..+++.
T Consensus 470 ~~~~~~~~~ 478 (508)
T KOG1840|consen 470 EELEEKVLN 478 (508)
T ss_pred HHHHHHHHH
Confidence 999888873
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.8e-13 Score=124.72 Aligned_cols=239 Identities=12% Similarity=0.058 Sum_probs=179.0
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH-HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV-EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
...|.+....+..|......|+++.|...+.++ ..|++. .+....++++...|+ ++.|+..++.
T Consensus 112 ~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~-------------~~~Al~~l~~ 178 (409)
T TIGR00540 112 DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE-------------LHAARHGVDK 178 (409)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence 345556677788899999999999999999987 366653 455556888887775 4669999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---------------------------------
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--------------------------------- 131 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--------------------------------- 131 (323)
.++..|+++.++..++.++...|++. ++.+.+.+..+
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~d~~----------~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSGAWQ----------ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999998 34444444443
Q ss_pred -----cCC----CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH--HHHHHH
Q psy11738 132 -----LKP----DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN--VLMLGK 200 (323)
Q Consensus 132 -----l~p----~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~lg~ 200 (323)
..| +++..+..+|..+... |++++|+..++++++..|++ ... ......
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~--------------------g~~~~A~~~l~~~l~~~pd~-~~~~~~~l~~~ 307 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDC--------------------DDHDSAQEIIFDGLKKLGDD-RAISLPLCLPI 307 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHC--------------------CChHHHHHHHHHHHhhCCCc-ccchhHHHHHh
Confidence 333 2444444444444444 55699999999999999997 332 122334
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH--HHHhhCCcchhhhh
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL--EAEKQHPLFYSQNV 278 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~--~a~~~~p~~~~~~~ 278 (323)
.....++.+.+++.++++++.+|+++.. ..+..++|... . .+++++|.++|+ .++..+|+. ..+
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~~~~~--~ll~sLg~l~~-------~---~~~~~~A~~~le~a~a~~~~p~~--~~~ 373 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDDKPKC--CINRALGQLLM-------K---HGEFIEAADAFKNVAACKEQLDA--NDL 373 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHH-------H---cccHHHHHHHHHHhHHhhcCCCH--HHH
Confidence 4455688999999999999999998731 11222333322 2 789999999999 688889985 446
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 279 LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 279 ~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+|.++..+|+.++|..+|++++.+
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 69999999999999999999998754
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.6e-13 Score=123.00 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=171.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH-HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV-EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.-.++.-+......|+++.|...+.++ .+|++. ......++++...|+ ++.|+..++++++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~-------------~~~Al~~l~~~~~~~P 184 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE-------------NHAARHGVDKLLEVAP 184 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCC
Confidence 344555566668999999999999997 366653 333455888887775 4669999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------------------------------------
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------------------------------------ 134 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------------------------------------ 134 (323)
+++.++..++.+|...|++. ++.+.+.+..+..+
T Consensus 185 ~~~~al~ll~~~~~~~gdw~----------~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWS----------SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999998 44434444443333
Q ss_pred ------CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH
Q psy11738 135 ------DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 135 ------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~ 208 (323)
+++.+...++..+... |+.++|.+.++++++..|+ +......+.+ ..+++
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~--------------------g~~~~A~~~L~~~l~~~~~--~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIEC--------------------DDHDTAQQIILDGLKRQYD--ERLVLLIPRL--KTNNP 310 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC--HHHHHHHhhc--cCCCh
Confidence 3444444444444444 4559999999999996554 3433334443 45999
Q ss_pred HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh
Q psy11738 209 EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 288 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~ 288 (323)
++++..+++.++..|++..... .++.+ .+. .++|.+|.++|++++...|+. ..+..++.++.+.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l-~lgrl----------~~~---~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~ 374 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWS-TLGQL----------LMK---HGEWQEASLAFRAALKQRPDA--YDYAWLADALDRL 374 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHH-HHHHH----------HHH---CCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHc
Confidence 9999999999999999875322 22221 222 688999999999999999985 5578999999999
Q ss_pred cCHHHHHHHHHHhhCCC
Q psy11738 289 ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 289 g~~~~A~~~~~~al~~~ 305 (323)
|+.++|..+|++++.+.
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998763
No 56
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=1.4e-14 Score=118.11 Aligned_cols=125 Identities=7% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH-HHhcC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC-FEITD 152 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~-~~~~~ 152 (323)
..++++..+++++..+|+++++|..+|.++...|++. +|...|.++++++|+++.++..+|.++ +..|+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~----------~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD----------NALLAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999 899999999999999999999999975 55553
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
. .+++|...++++++++|++ +.+++++|.++.+.|++++|+.++++++++.|.+.+
T Consensus 124 ~------------------~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 124 H------------------MTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred C------------------CcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 2 2399999999999999998 799999999999999999999999999999887654
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.3e-14 Score=112.34 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
.+|+++++++|++ ++.+|.++...|++ ++|+.+|+.++.++|.+ ..+++.+|.++.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~--------------------~~A~~~~~~al~~~P~~-~~a~~~lg~~~~ 69 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDY--------------------SRAVIDFSWLVMAQPWS-WRAHIALAGTWM 69 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Confidence 3688888888875 55677777776544 88888888888888887 588888888888
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
..|++++|+.+|++++.++|.+..
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcH
Confidence 888888777777777777665543
No 58
>KOG4162|consensus
Probab=99.60 E-value=1.1e-12 Score=120.72 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=201.6
Q ss_pred hhhHHHHHHhhhHHHh-hccHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFE-EQQFEEVNKMLESS-------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~-------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
|.++..++--+..+++ .+.++++++...++ ..--.+-.+.-+|-+|..+...... +.++.....++++.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~--~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL--KSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC--hHHHHHHHHHHHHHH
Confidence 3444444444444444 58888888877765 1233456677788888877766554 667788889999999
Q ss_pred HhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCc-------
Q psy11738 83 YNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMP------- 154 (323)
Q Consensus 83 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~------- 154 (323)
++|++.+|+|+.+.++++.-|...++.. .|.++..++++++| +++.+|+.|+.++...+++.
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~----------sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLT----------SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999999999999999888 78889999999955 57788999998877555431
Q ss_pred ---------------------------------------HHH---------HHHHHHhhcC-------------------
Q psy11738 155 ---------------------------------------WYQ---------RKIANAIFDT------------------- 167 (323)
Q Consensus 155 ---------------------------------------~~~---------~~~~~~~~~~------------------- 167 (323)
|-. +.-....++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 100 0000000000
Q ss_pred ---------------CC----------------------------CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 168 ---------------LP----------------------------TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 168 ---------------~~----------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
+| .+.-++|..++.++-.++|.. +.+++..|.++..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-ASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-HHHHHHhhHHHHH
Confidence 00 112367777888888999986 7899999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|+.++|.+.|..|+.++|++..... .+|..+... ...+..++...+..++.++|.+ ..+|+.||.+
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~-----------Ala~~lle~-G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v 763 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMT-----------ALAELLLEL-GSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEV 763 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHH-----------HHHHHHHHh-CCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 99999999999999999999986533 122222221 1334455556999999999999 7999999999
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+...|+.++|.+||.-|+++.+.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccC
Confidence 99999999999999999998654
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=4.7e-14 Score=115.06 Aligned_cols=129 Identities=13% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++.++++..++++++.+|++ ...|+.||.+|...|++++|+.+|++++.++|++..... .++.+++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~-~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~-----------~lA~aL~~~ 120 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQN-SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYA-----------ALATVLYYQ 120 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHh
Confidence 34599999999999999998 799999999999999999999999999999999876432 122222211
Q ss_pred CCCCc--HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC-ChhHHHHHH
Q psy11738 251 LPTSS--YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-AVQEATKLL 314 (323)
Q Consensus 251 ~~~~~--~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 314 (323)
.|+ +++|+..+.+++..+|++ ..+++.+|.++...|++++|+.+|++++++. |+++-..++
T Consensus 121 --~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 121 --AGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 234 699999999999999999 7999999999999999999999999999994 444444554
No 60
>KOG1125|consensus
Probab=99.59 E-value=4.8e-14 Score=125.91 Aligned_cols=190 Identities=14% Similarity=0.093 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.|.+.+|.-.|+.|+..+|.++++|.+||++....++-. .|+..+.++++++|+|..++..||..|...
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~----------~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ----------NAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH----------HHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 4566788999999999999999999999999998877766 788899999999999999999999998877
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH---------HHHHcCCHHHHHHHHHHHhCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK---------TYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~---------~y~~~g~~~~A~~~~~~al~~ 221 (323)
|.- .+|++++.+=+..+|... +...+. -......+....+.|-.+...
T Consensus 367 g~q--------------------~~Al~~L~~Wi~~~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 367 GLQ--------------------NQALKMLDKWIRNKPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred hhH--------------------HHHHHHHHHHHHhCccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 644 889999998887766531 111100 001111233445556666555
Q ss_pred CCCCch-hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 222 PVKQDK-DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 222 ~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.|...+ +....++-+ ++ -.+.|+.|+.+|+.|+...|++ ...|..||.++....+..+|+..|.+
T Consensus 424 ~~~~~DpdvQ~~LGVL----------y~---ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVL----------YN---LSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred CCCCCChhHHhhhHHH----------Hh---cchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 553211 111122111 11 1588999999999999999999 79999999999999999999999999
Q ss_pred hhCCCCh
Q psy11738 301 TKNYPAV 307 (323)
Q Consensus 301 al~~~~~ 307 (323)
|+++.|.
T Consensus 490 ALqLqP~ 496 (579)
T KOG1125|consen 490 ALQLQPG 496 (579)
T ss_pred HHhcCCC
Confidence 9999998
No 61
>KOG2003|consensus
Probab=99.58 E-value=1.1e-13 Score=120.47 Aligned_cols=219 Identities=15% Similarity=0.120 Sum_probs=186.4
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.+..+..+|+..|..|++++|...|+.+ -+....++++.+|-.+..+| ++++|+.+|-+...+--
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~-------------~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALG-------------NLDEALDCFLKLHAILL 555 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhc-------------CHHHHHHHHHHHHHHHH
Confidence 4455677888889999999999999987 47778888888888776666 56789999999988888
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+++++++.++.+|..+.+.. +|++++.++-.+-|++|..+..||.+|-+-|+-
T Consensus 556 nn~evl~qianiye~led~a----------qaie~~~q~~slip~dp~ilskl~dlydqegdk----------------- 608 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPA----------QAIELLMQANSLIPNDPAILSKLADLYDQEGDK----------------- 608 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHH----------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccch-----------------
Confidence 89999999999999999888 999999999999999999999999999887765
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
..|..++-.+.+..|.+ ..+.-.||..|....=+++|+.+|++|.-+.|+...+ +..++.++..
T Consensus 609 ---sqafq~~ydsyryfp~n-ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw-----------qlmiasc~rr- 672 (840)
T KOG2003|consen 609 ---SQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-----------QLMIASCFRR- 672 (840)
T ss_pred ---hhhhhhhhhcccccCcc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-----------HHHHHHHHHh-
Confidence 89999999999999998 5888889999999999999999999999998886532 1223444333
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
.|+|..|++.|+......|.+ ...+-.|-.+...+|-
T Consensus 673 --sgnyqka~d~yk~~hrkfped-ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 --SGNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAGDLGL 709 (840)
T ss_pred --cccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhccccc
Confidence 799999999999999999998 6777777777666554
No 62
>KOG0550|consensus
Probab=99.58 E-value=4e-14 Score=121.64 Aligned_cols=223 Identities=15% Similarity=0.085 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
++..|.+|+..+..|++..|+++..|.+.+.++...++++ ++.-...+.++++|..+..+...++++...
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~----------~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFE----------EALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHh----------hcccchhhheecCCCccccccchhhhhhhh
Confidence 4567888999999999999999999999999999999999 677788899999999999998999988877
Q ss_pred cCCcHHHHHH--------HHHhhcC------------------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 151 TDMPWYQRKI--------ANAIFDT------------------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 151 ~~~~~~~~~~--------~~~~~~~------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
++..-....+ ++.+-.. +..++|++|...--..+++++.+ ..+++..
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n-~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN-AEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch-hHHHHhc
Confidence 7552222111 1110000 24678999999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh-cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch---
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--- 274 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--- 274 (323)
|.|++..++.+.|+.+|++++.++|.+........ .......+.-++..+ ..|+|..|.+.|..++.++|++.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f---k~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF---KNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh---hccchhHHHHHHHHhhcCCccccchh
Confidence 99999999999999999999999999865544211 111111122222233 37999999999999999999752
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..|.++|.+...+|+..+|+...+.|+.|+|.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 245889999999999999999999999999987
No 63
>KOG0624|consensus
Probab=99.58 E-value=2.7e-13 Score=114.12 Aligned_cols=184 Identities=13% Similarity=0.117 Sum_probs=146.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
-+|...+-|+.+|.-+...|++. .|..+|..|++.+|++..+.+..|.+|..+|.-
T Consensus 33 ~~~advekhlElGk~lla~~Q~s----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-------------- 88 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-------------- 88 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC--------------
Confidence 35678888999999999999999 889999999999999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh----hhhcchhHHHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC----FEITDMPWYQRKI 243 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~ 243 (323)
.-|+..+.+++++.|++ ..+....|.+++++|++++|..-|+..+.-+|.+....- ..+..-.|.....
T Consensus 89 ------k~al~Dl~rVlelKpDF-~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~q 161 (504)
T KOG0624|consen 89 ------KAALQDLSRVLELKPDF-MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQ 161 (504)
T ss_pred ------ccchhhHHHHHhcCccH-HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999998 589999999999999999999999999999997643221 1122222222222
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 244 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 244 a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.. ....|++..|+.+..+.+++.|.+ +..+.+.+.||...|+...|+..++.+-++..
T Consensus 162 l~s---~~~~GD~~~ai~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 162 LKS---ASGSGDCQNAIEMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHH---HhcCCchhhHHHHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 222 223677888888888888888877 67777778888888888888877777777633
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.9e-12 Score=106.41 Aligned_cols=245 Identities=15% Similarity=0.071 Sum_probs=176.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.-+-.|-.+.-+++.++|++++..+ .+|...++.+.+|..+...|. .+.|+..-+..++ .|+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-------------vDRAIRiHQ~L~~-spd 100 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-------------VDRAIRIHQTLLE-SPD 100 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-------------HHHHHHHHHHHhc-CCC
Confidence 344455566666678888999988876 588999999999999988874 4667777655544 455
Q ss_pred cHH-----HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 92 HYA-----IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+. +...+|.=|...|-++ .|...|........--..+.-.|-.+|....+|
T Consensus 101 lT~~qr~lAl~qL~~Dym~aGl~D----------RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW------------- 157 (389)
T COG2956 101 LTFEQRLLALQQLGRDYMAAGLLD----------RAEDIFNQLVDEGEFAEGALQQLLNIYQATREW------------- 157 (389)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhh----------HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH-------------
Confidence 443 2333444444444333 677777777765555666777777787776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFY----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
++||..-++..++.|... +..+..|+..+....+++.|+..+.+|++.+|+...+.. .++.+
T Consensus 158 -------~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi-~lG~v------ 223 (389)
T COG2956 158 -------EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI-ILGRV------ 223 (389)
T ss_pred -------HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh-hhhHH------
Confidence 888888888888877642 234666777788888899999999999999888765532 22221
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
. ...|+|+.|++.+.++.+.+|++.+.+...|-.||..+|+.++...++.++.+..+..+..-++-+
T Consensus 224 ----~---~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~ 290 (389)
T COG2956 224 ----E---LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLAD 290 (389)
T ss_pred ----H---HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 1 126889999999999999999887788888899999999999999999999888887666554443
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=7.1e-14 Score=107.27 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
..+++++..+|++..+.+.+|.++...+++. +|.+.+++++.++|.++.++..+|.++...+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~------ 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD----------EALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY------ 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH------
Confidence 4578999999999999999999999999998 899999999999999999999999999998765
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|..+++++|++ +..++.+|.+|...|++++|+.+++++++++|.+..
T Consensus 68 --------------~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 68 --------------EEAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999999999999998 699999999999999999999999999999998754
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=1.3e-13 Score=105.89 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=100.8
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
+++.+++.++|++..+.+.+|..++..+++ ++|+..|+++++++|++ +.++..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~la~~~~ 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY--------------------DEALKLFQLLAAYDPYN-SRYWLGLAACCQ 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 368888889998888888888888877655 88899999988888887 688888888888
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
.+|++++|+.++++++.. +|++ +..++.+|.
T Consensus 63 ~~~~~~~A~~~~~~~~~~------------------------------------------------~p~~-~~~~~~la~ 93 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAAL------------------------------------------------DPDD-PRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHHHHhc------------------------------------------------CCCC-hHHHHHHHH
Confidence 888888887777776665 4444 566788888
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHHHhhh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKAKSYL 321 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~ 321 (323)
+|...|++++|+.+|+++++++|.+.. .+..+++..++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 888889999999999998888777555 35555565554
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=2.7e-12 Score=114.97 Aligned_cols=210 Identities=11% Similarity=0.007 Sum_probs=157.5
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cHHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HYAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
+|+++-.++.+|..+...++... +...+.++....|. ..+.....+.++...|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~-------- 60 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPA-------------AAAKAAAAAQALAARATERERAHVEALSAWIAGDLP-------- 60 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcch-------------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH--------
Confidence 79999999999988888876433 45555555555554 4456677788888888888
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|...++++++.+|++..++.. +..++..+.. .+....+.+.+......+|+. ..++..+
T Consensus 61 --~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 120 (355)
T cd05804 61 --KALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------------SGMRDHVARVLPLWAPENPDY-WYLLGML 120 (355)
T ss_pred --HHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------------ccCchhHHHHHhccCcCCCCc-HHHHHHH
Confidence 8889999999999999987765 6555555543 122244555555544566775 5778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc---hh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YS 275 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~---~~ 275 (323)
|.++...|++++|+..+++++.++|++.... ..++..++. .|++++|+.++.+++...|.. ..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~-----------~~la~i~~~---~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAV-----------HAVAHVLEM---QGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH-----------HHHHHHHHH---cCCHHHHHHHHHhhhhccCCCcchhH
Confidence 9999999999999999999999999985321 122333332 689999999999999987643 11
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
..+..+|.++...|++++|+..|++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3466899999999999999999999987766
No 68
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=2.8e-12 Score=124.33 Aligned_cols=252 Identities=8% Similarity=-0.054 Sum_probs=170.7
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....|..+...+..+-..++.|++..|+..+.++ .+|+++....-++.++...|+. ++|+.++++
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~-------------~~A~~~~ek 93 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD-------------QEVIDVYER 93 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc-------------HHHHHHHHH
Confidence 3455667778899999999999999999999997 5888854444777778777754 568999999
Q ss_pred hccCCCCcHHHHHHH--HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWL--AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 85 al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
++ +|.+...+..+ |.++...|++. +|++.|+++++.+|+++.++..++..+...++.
T Consensus 94 a~--~p~n~~~~~llalA~ly~~~gdyd----------~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~--------- 152 (822)
T PRK14574 94 YQ--SSMNISSRGLASAARAYRNEKRWD----------QALALWQSSLKKDPTNPDLISGMIMTQADAGRG--------- 152 (822)
T ss_pred hc--cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH---------
Confidence 99 44444444444 77888888888 888899999999999998888887777776544
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh---hhh------
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC---FEI------ 233 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~------ 233 (323)
++|+..+++++..+|++ .. +..++.++..+++..+|+..+++++..+|.+..... ..+
T Consensus 153 -----------~eAl~~l~~l~~~dp~~-~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 153 -----------GVVLKQATELAERDPTV-QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred -----------HHHHHHHHHhcccCcch-HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 77777777777777764 23 344555555566666677777777777777632211 000
Q ss_pred ----------------cchhHHHH--------------------------HHH--HHhhc--------------------
Q psy11738 234 ----------------TDMPWYQR--------------------------KIA--NAIFD-------------------- 249 (323)
Q Consensus 234 ----------------~~~~~~~~--------------------------~~a--~~~~~-------------------- 249 (323)
....|+.. .++ ..++.
T Consensus 220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 00000000 000 00000
Q ss_pred --cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 250 --TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 250 --~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
-...+++.+++..|+.........+.-+....|.+|+..+++++|...|.+++.-+
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 01135677888888776644422223456778999999999999999999987754
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=6.3e-13 Score=126.60 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=132.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..|.++++++.||++....|.+ ++|...++.+++++|++..++..++.++...++++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~-------------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e---------- 137 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRS-------------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE---------- 137 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCc-------------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH----------
Confidence 4788899999999999998854 67999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|...+++++..+|+++.+++.+|.++...|.+ ++|+..|++++..+|++ +.++..+|.
T Consensus 138 eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~--------------------~~A~~~y~~~~~~~p~~-~~~~~~~a~ 196 (694)
T PRK15179 138 AGRAEIELYFSGGSSSAREILLEAKSWDEIGQS--------------------EQADACFERLSRQHPEF-ENGYVGWAQ 196 (694)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch--------------------HHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999997 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++...|+.++|...|++++.......
T Consensus 197 ~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 197 SLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999998865544
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.6e-12 Score=106.00 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=166.7
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----HHHHHhhHHHH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----TLFMLGMWCFE 149 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----~~~~lg~~~~~ 149 (323)
.++|+..|-..++.+|...+++.-+|.++...|..+ .|++. .+.+-..|+-+. +...||.-|+.
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvD----------RAIRi-HQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVD----------RAIRI-HQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHH----------HHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999888 66644 455656676543 56677777777
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
.|-+ +.|...|..... .|.+...++..|..+|-...++++|++.-++..++.+......
T Consensus 120 aGl~--------------------DRAE~~f~~L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 120 AGLL--------------------DRAEDIFNQLVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred hhhh--------------------hHHHHHHHHHhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 7654 999999988776 4555568899999999999999999999999999988775432
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh--
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-- 307 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-- 307 (323)
++.++..+|-.... ..+++.|+..+.+|+..+|+. .++-..+|.++...|+++.|++.|+.+++.+|.
T Consensus 179 ------IAqfyCELAq~~~~---~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 179 ------IAQFYCELAQQALA---SSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ------HHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 22333334433332 578999999999999999998 899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHhhh
Q psy11738 308 QEATKLLEKAKSYL 321 (323)
Q Consensus 308 ~~~~~~l~~~~~~~ 321 (323)
++.-+.|.++++-|
T Consensus 249 ~evl~~L~~~Y~~l 262 (389)
T COG2956 249 SEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHHHHHHh
Confidence 66668888887655
No 71
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=4e-13 Score=102.61 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=107.0
Q ss_pred HHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 127 NKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 127 ~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
.-...++ |++.+..|.+|..++..|++ ++|++.|+.+..++|.+ ...|++||.|+..+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l--------------------~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEF--------------------AGAARLFQLLTIYDAWS-FDYWFRLGECCQAQ 82 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHH
Confidence 3346677 88889999999998888765 99999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
|++++|+..|.+|..+ +|++ +..++++|.||
T Consensus 83 g~~~~AI~aY~~A~~L------------------------------------------------~~dd-p~~~~~ag~c~ 113 (157)
T PRK15363 83 KHWGEAIYAYGRAAQI------------------------------------------------KIDA-PQAPWAAAECY 113 (157)
T ss_pred hhHHHHHHHHHHHHhc------------------------------------------------CCCC-chHHHHHHHHH
Confidence 9988888888777665 5555 67789999999
Q ss_pred HHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHHHhhhc
Q psy11738 286 MRLENYEQAAYYLEMTKNY-PAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~~~~~~ 322 (323)
+..|+.+.|...|+.|+.+ ..+++...+-++++.+|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999999998 566677778888887763
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=2.1e-11 Score=109.18 Aligned_cols=254 Identities=15% Similarity=0.116 Sum_probs=180.9
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+..+..+.++..++..|++++|+..++++ ..|.+..++.. +..+..+|+.... ...+...+......+
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 110 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM---------RDHVARVLPLWAPEN 110 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC---------chhHHHHHhccCcCC
Confidence 34555677888899999999999999987 58988877665 6677777765442 233444455566778
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|....++..+|.++...|++. +|...++++++++|+++.++..+|.+++..|++
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~---------------- 164 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYD----------RAEEAARRALELNPDDAWAVHAVAHVLEMQGRF---------------- 164 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------------
Confidence 888888888899999999998 899999999999999999999999999998766
Q ss_pred CCCHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc--hhh----h----hhhcc-
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD--KDQ----C----FEITD- 235 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~----~----~~~~~- 235 (323)
++|+.++++++...|... ...+..+|.++...|++++|+..|++++...|... ... . ..+..
T Consensus 165 ----~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 165 ----KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred ----HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999977431 13466899999999999999999999987766221 100 0 00000
Q ss_pred ----hhHHHHHHHH-----------------HhhccCCCCcHHHHHHHHHHHHhhCCc---c-----hhhhhHHHHHHHH
Q psy11738 236 ----MPWYQRKIAN-----------------AIFDTLPTSSYEEALKYFLEAEKQHPL---F-----YSQNVLMLGKTYM 286 (323)
Q Consensus 236 ----~~~~~~~~a~-----------------~~~~~~~~~~~~~Al~~~~~a~~~~p~---~-----~~~~~~~lg~~y~ 286 (323)
..| ..++. ........++.++|...+......... . ...+....|.++.
T Consensus 241 ~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 241 VDVGDRW--EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CChHHHH--HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 001 00000 011112356677777777665443211 0 1245667788888
Q ss_pred HhcCHHHHHHHHHHhhCCCCh
Q psy11738 287 RLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 287 ~~g~~~~A~~~~~~al~~~~~ 307 (323)
..|++++|+..+..++.+...
T Consensus 319 ~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 319 AEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998888877544
No 73
>KOG1156|consensus
Probab=99.50 E-value=5.2e-12 Score=114.32 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=192.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|+.-..+|.++-..++.++|...+..++.+ ++|++++.+--.|-.++-+|+ -++|..+...+++.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-------------~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-------------KEEAYELVRLGLRN 70 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc-------------hHHHHHHHHHHhcc
Confidence 455566899999999999999999998887 699999988777777777774 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
|+...-.|..+|.++....++. +|+.+|..|++++|+|...+.-++.+-.+++++
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~----------eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~--------------- 125 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYD----------EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY--------------- 125 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---------------
Confidence 9999999999999999888888 999999999999999999999999988888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
+.........+++.|++ -..|+..+..+...|++..|...++...+......+...+..+..-.+...+
T Consensus 126 -----~~~~~tr~~LLql~~~~-ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----- 194 (700)
T KOG1156|consen 126 -----EGYLETRNQLLQLRPSQ-RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----- 194 (700)
T ss_pred -----hhHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-----
Confidence 88888888999999997 5889999999999999999999988777665322222221111111111110
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
....|.+++|++.+.+--..--+. .......|..+..+|++++|...|...+..+|++-
T Consensus 195 -~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 195 -LIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred -HHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 011466778877776533222222 23345668889999999999999999998888843
No 74
>KOG1174|consensus
Probab=99.49 E-value=1.4e-11 Score=106.15 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=186.2
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC---------c------------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL---------S------------ 67 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~---------~------------ 67 (323)
++...-+...|+.++..|++.+|+..+++. .+|.+++..-..|..+..-|++.... +
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 344455677899999999999999999987 58888888777777776666654321 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
.-.-..+++.|+.+.+|++..+|.+..++...|.++..+++.. +|+-+|..|+.+.|..-+.|..|-.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~----------~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT----------QAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH----------HHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 0012456899999999999999999999999999999999999 888999999999999999999888888
Q ss_pred HHhcCCc-------HHHHHHHH-----HhhcC----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 148 FEITDMP-------WYQRKIAN-----AIFDT----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 148 ~~~~~~~-------~~~~~~~~-----~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
...+.+. |..+.+.+ .+++. ..-..-++|.+.++++++++|++ ..+-..++..+.+.|.++.+
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchH
Confidence 8777552 22222221 12221 11223589999999999999997 68889999999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 278 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~ 278 (323)
+..+++.+...|+...... ++..+-. .+.+++|+++|..|+.++|++ ..+.
T Consensus 458 i~LLe~~L~~~~D~~LH~~------------Lgd~~~A---~Ne~Q~am~~y~~ALr~dP~~-~~sl 508 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNH------------LGDIMRA---QNEPQKAMEYYYKALRQDPKS-KRTL 508 (564)
T ss_pred HHHHHHHHhhccccHHHHH------------HHHHHHH---hhhHHHHHHHHHHHHhcCccc-hHHH
Confidence 9999999998887643221 1211111 567999999999999999998 4443
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=8e-12 Score=119.11 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=79.7
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+.-.|++++++..+|.+....|.++ +|..++++++++.|++..++..++.++.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~----------ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------- 136 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSD----------EGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------- 136 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcH----------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-----------
Confidence 33444555555555555555555555 555555555555555555555555555554433
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+..+++++..+|++ +.+++.+|.++..+|++++|+.+|++++
T Consensus 137 ---------eeA~~~~~~~l~~~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~------------------------- 181 (694)
T PRK15179 137 ---------EAGRAEIELYFSGGSSS-AREILLEAKSWDEIGQSEQADACFERLS------------------------- 181 (694)
T ss_pred ---------HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHH-------------------------
Confidence 55555555555555554 4555555555555555555555555554
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+|++ +.++..+|.++..+|+.++|...|++|++.
T Consensus 182 -----------------------~~~p~~-~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 182 -----------------------RQHPEF-ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred -----------------------hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 566666666666666666666666666665
No 76
>KOG2076|consensus
Probab=99.46 E-value=4.5e-11 Score=111.97 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=184.8
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
..-.|.....+...|..+-..|+.++|+...-.+ .+|++.+.|.+++.....+| ++..|+-+|.+
T Consensus 166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~-------------~i~qA~~cy~r 232 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG-------------NINQARYCYSR 232 (895)
T ss_pred HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-------------cHHHHHHHHHH
Confidence 3445666777888999999999999998876655 69999999999998877666 56779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----HHHHHhhHHHHhc--------
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----TLFMLGMWCFEIT-------- 151 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----~~~~lg~~~~~~~-------- 151 (323)
|+..+|.+....+..+.+|..+|+.. .|.+.|.+++.+.|.... .-+..+..+...+
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~----------~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLK----------RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHH----------HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999887 666677777777762110 0011111111111
Q ss_pred ----------------------------CCcHHHHHHHHHhh---------------cC---------------------
Q psy11738 152 ----------------------------DMPWYQRKIANAIF---------------DT--------------------- 167 (323)
Q Consensus 152 ----------------------------~~~~~~~~~~~~~~---------------~~--------------------- 167 (323)
.+.....++..... +.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 11111111110000 00
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH
Q psy11738 168 -------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240 (323)
Q Consensus 168 -------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 240 (323)
+....-.+++.+|..--...|.....-++.++..|...|++.+|+.+|-.+....+...... +
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v----------w 452 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV----------W 452 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh----------h
Confidence 01122345555555444444655456789999999999999999999999998877665222 2
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
..+|.++.. .+.+++|++.|.+++.+.|++ .++.+.|+.+|..+|++++|.+.++...
T Consensus 453 ~~~a~c~~~---l~e~e~A~e~y~kvl~~~p~~-~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYME---LGEYEEAIEFYEKVLILAPDN-LDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 234444433 688999999999999999998 7999999999999999999999999876
No 77
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=3.2e-12 Score=122.91 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+++...+++...+..|- +.. -+|.+.+++..+..+|...+ ++++|+..++.+++..|+...+++
T Consensus 6 ~~~~~~~~~ee~~~r~~--~~~-~~p~n~~a~~~Li~~~~~~~-------------~~deai~i~~~~l~~~P~~i~~yy 69 (906)
T PRK14720 6 IDKLTSLLNEEKWTRAD--ANN-YSLSKFKELDDLIDAYKSEN-------------LTDEAKDICEEHLKEHKKSISALY 69 (906)
T ss_pred HHHHHHHhhhhhhhhcc--ccc-CCcchHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHhCCcceehHH
Confidence 34444445444444431 000 38899999999999997777 457799999999999999999999
Q ss_pred HHHHHHHHhhcccchHHH-----H--HhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 98 WLAVILNEKATLEGTKAR-----I--QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-----~--~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.+|.++...+++.....- . ..-..+.+++...+-..|++..+++.||.||-.+|+.
T Consensus 70 ~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------------- 132 (906)
T PRK14720 70 ISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------------- 132 (906)
T ss_pred HHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh-----------------
Confidence 999998888886532110 0 0111445666666666777779999999999888766
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|...|+++++++|++ +.++.++|..|... +.++|++++.+|+... +
T Consensus 133 ---~ka~~~yer~L~~D~~n-~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~----------------i----------- 180 (906)
T PRK14720 133 ---KKLKGVWERLVKADRDN-PEIVKKLATSYEEE-DKEKAITYLKKAIYRF----------------I----------- 180 (906)
T ss_pred ---HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH----------------H-----------
Confidence 99999999999999998 79999999999999 9999999999998751 0
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhh--------------------hHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQN--------------------VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~--------------------~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+.++|.++.+.+.+.+..+|++ .+. +..+=.+|...+++++++.+++.+|+++|.+
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d-~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDD-FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCccc-chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 1346777888888888888865 232 2223388899999999999999999998774
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=3.1e-11 Score=98.61 Aligned_cols=182 Identities=14% Similarity=0.044 Sum_probs=155.0
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
..+...+-+....+|++..+ ..++..+...|+-. .+.....++..-.|.+......+|...+..|++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~----------~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~-- 116 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDAD----------SSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF-- 116 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccccc----------chHHHHhhhhccCcccHHHHHHHHHHHHHhcch--
Confidence 44777778889999999999 99999999998877 566678888888999999998899998888766
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
..|+..|.++.+++|++ ..+|..+|.+|.+.|++++|...|.+++++.|+++.... +
T Consensus 117 ------------------~~A~~~~rkA~~l~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n----N 173 (257)
T COG5010 117 ------------------GEAVSVLRKAARLAPTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN----N 173 (257)
T ss_pred ------------------HHHHHHHHHHhccCCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh----h
Confidence 99999999999999998 699999999999999999999999999999999876432 2
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.... -.|+++.|..++.++...-+.+ ..+..+|+.+-...|++.+|...-.+-+..
T Consensus 174 lgms~~----------L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 174 LGMSLL----------LRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred HHHHHH----------HcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 222111 1689999999999999988877 688999999999999999998876654433
No 79
>KOG0495|consensus
Probab=99.44 E-value=7.4e-11 Score=107.09 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=187.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC--------------------cHHHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL--------------------SDADKKQLI 75 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~--------------------~~~~~~~~~ 75 (323)
+--+......|+...|..++..+ ..|++-++++---..-....++.... .-+..++..
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence 34445555567777777777665 36666665543333332222211000 134567788
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+.+++.+++..|+....+..+|.++..+++.+ .|++.|...++.-|+.+-.|..|+.+--..|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie----------~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-- 735 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE----------MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-- 735 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH----------HHHHHHHhccccCCCCchHHHHHHHHHHHhcch--
Confidence 99999999999999999999999999999888888 788889999999999999999999887776665
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh--
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-- 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-- 233 (323)
-.|...+.++.-.+|++ ...|+..-.+-.+.|..++|....-+|++..|.+.......+
T Consensus 736 ------------------~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 736 ------------------VRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred ------------------hhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 88999999999999998 688888888899999999999999999999998842211000
Q ss_pred --------cch---------hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 234 --------TDM---------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 234 --------~~~---------~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
... .-....++..+.. ..++++|.++|.++++.+|++ .++|..+=..+...|.-+.=.+
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~---e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS---EKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHH---HHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHH
Confidence 000 0000112222222 456889999999999999988 6888888888888888888888
Q ss_pred HHHHhhCCCCh
Q psy11738 297 YLEMTKNYPAV 307 (323)
Q Consensus 297 ~~~~al~~~~~ 307 (323)
.+.+...-.|.
T Consensus 873 v~~~c~~~EP~ 883 (913)
T KOG0495|consen 873 VLKKCETAEPT 883 (913)
T ss_pred HHHHHhccCCC
Confidence 88888877776
No 80
>KOG1840|consensus
Probab=99.44 E-value=4.5e-12 Score=115.56 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=160.5
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTK 113 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~ 113 (323)
+|.-..+...++..|...| +|++|+..+++|+++ .|.-.....++|.+|..++++.
T Consensus 195 ~P~~~~~~~~La~~y~~~g-------------~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~--- 258 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQG-------------RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD--- 258 (508)
T ss_pred CchHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH---
Confidence 6666666666777777766 567789999999888 7777777778999999999998
Q ss_pred HHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q psy11738 114 ARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 114 ~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 185 (323)
+|+..|++|+.+ +|.-..++.+||.+|+..|.+ .+|..++++|++
T Consensus 259 -------eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf--------------------~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 259 -------EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF--------------------AEAEEYCERALE 311 (508)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh--------------------HHHHHHHHHHHH
Confidence 888889998876 344456789999999887655 889999998888
Q ss_pred c-------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 186 Q-------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 186 ~-------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
+ .+...+..+.+++.++..++++++|+.++++++++-.+....... .++-+...++..++. +|+|++
T Consensus 312 I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~---~~a~~~~nl~~l~~~---~gk~~e 385 (508)
T KOG1840|consen 312 IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV---NLAKIYANLAELYLK---MGKYKE 385 (508)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHHH---hcchhH
Confidence 7 222234668889999999999999999999999874311100000 112223334444443 799999
Q ss_pred HHHHHHHHHhhC--------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 259 ALKYFLEAEKQH--------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 259 Al~~~~~a~~~~--------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
|.+.|++|+... +.. ...+.+||..|..++++.+|...|.+++.+.
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGV-GKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999875 222 3457789999999999999999999888775
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=2e-11 Score=118.49 Aligned_cols=202 Identities=8% Similarity=-0.097 Sum_probs=163.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..|+.+...+..+.+....|++ ..|+..++++++.+|.++.+..-+..++...|+..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~-------------~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~---------- 85 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDT-------------APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ---------- 85 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH----------
Confidence 4778888888888888887754 56999999999999999644447777788888888
Q ss_pred HHHHHHHHHHccCCCChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|..++++++ +|.+...+..+ |.++...|++ ++|+..|+++++.+|++ +.++..+
T Consensus 86 ~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdy--------------------d~Aiely~kaL~~dP~n-~~~l~gL 142 (822)
T PRK14574 86 EVIDVYERYQ--SSMNISSRGLASAARAYRNEKRW--------------------DQALALWQSSLKKDPTN-PDLISGM 142 (822)
T ss_pred HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCCC-HHHHHHH
Confidence 8999999999 66555555555 7788887655 99999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 278 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~ 278 (323)
+.+|...++.++|++.++++...+|.+... + .++....+ .++..+|+..++++++.+|++ ...+
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~dp~~~~~----l--------~layL~~~---~~~~~~AL~~~ekll~~~P~n-~e~~ 206 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAERDPTVQNY----M--------TLSYLNRA---TDRNYDALQASSEAVRLAPTS-EEVL 206 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhcccCcchHHH----H--------HHHHHHHh---cchHHHHHHHHHHHHHhCCCC-HHHH
Confidence 999999999999999999999999884321 1 11111111 466767999999999999998 7888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 279 LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 279 ~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+..+....|-..-|.+..++--.+
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 99999999999999998877764433
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=2.8e-12 Score=97.97 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=101.2
Q ss_pred hhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 84 NALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 84 ~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.+..+. |+.-+..+.+|..+...|++. +|...|..+..++|.++..|++||.++..+|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~----------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~--------- 85 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFA----------GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW--------- 85 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH---------
Confidence 445677 888899999999999999999 899999999999999999999999999999766
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+..|.+++.++|++ +.+++++|.||...|+.+.|.+.|+.++...
T Consensus 86 -----------~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 -----------GEAIYAYGRAAQIKIDA-PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998 7999999999999999999999999999876
No 83
>KOG0548|consensus
Probab=99.41 E-value=3.5e-11 Score=107.00 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSS 64 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~ 64 (323)
....-..|+..+...+|..|+..+..+ .+ .++..+...+-+|..+|.+..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence 334556778888888999999988886 35 777788888888888887654
No 84
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=5.4e-11 Score=114.62 Aligned_cols=233 Identities=10% Similarity=0.027 Sum_probs=170.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-----HHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS-----DADKKQLILSAY 79 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~-----~~~~~~~~~~A~ 79 (323)
...+|...+.+...+..+...|++++|+.++... ..|+.+.+++.+|.++...++...+.. .......+ .++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~v 102 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIV 102 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHH
Confidence 4567788888888999999999999999999976 599999999999999998888655420 11112223 567
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.++...+-..|++..+++.+|.||..+|+.. ++...|+++++++|+|+.+..++|..+... ++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~----------ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL------ 165 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENK----------KLKGVWERLVKADRDNPEIVKKLATSYEEE-DK------ 165 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH------
Confidence 7777777778888899999999999999999 899999999999999999999999888776 66
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh---hh-cc
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF---EI-TD 235 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~-~~ 235 (323)
++|+.++.+|++. |...+++.++.++..+.+..+|.+.+.... .+ ..
T Consensus 166 --------------~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~ 216 (906)
T PRK14720 166 --------------EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGH 216 (906)
T ss_pred --------------HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhh
Confidence 7777777777664 334456666667677777666666433110 00 00
Q ss_pred hh--HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH
Q psy11738 236 MP--WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287 (323)
Q Consensus 236 ~~--~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~ 287 (323)
+. -.-..+-.........++|++++..++.+++.+|.+ ..+.+.++.||..
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~~ 269 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKAREELIRFYKE 269 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHHH
Confidence 00 000000000001123678999999999999999998 6889999999983
No 85
>KOG0553|consensus
Probab=99.40 E-value=3.7e-12 Score=105.92 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=107.5
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
...++.+-.+|+.+++.++|++|+..|..+ .+|.|+-++...|.+|+.+|.+ +.|++.+++|+.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-------------~~AVkDce~Al~i 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-------------EDAVKDCESALSI 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-------------HHHHHHHHHHHhc
Confidence 344566777999999999999999999998 5999999999999999999854 5699999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
||....+|..+|.+|..+|+++ +|++.|+++|+++|+|...+..|.++-...+..
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~----------~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYE----------EAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHH----------HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999 899999999999999998888888776665543
No 86
>KOG0553|consensus
Probab=99.38 E-value=6.4e-12 Score=104.49 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
.+.++|++|+..|.+||+++|.|+-.|-+.+-+|..+|+++ .|++.++.|+.+||....+|-.||.+|+.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~----------~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE----------DAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH----------HHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 35677888888888888888888888888888888888888 77888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~ 209 (323)
+|++ .+|+..|+|+|+++|++ .....+|..+--.+++..
T Consensus 162 ~gk~--------------------~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKY--------------------EEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcH--------------------HHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 7654 88888888888888887 466666655544444443
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=1.1e-10 Score=95.45 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=133.7
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccc
Q psy11738 33 VNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEG 111 (323)
Q Consensus 33 A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 111 (323)
+..+.... ..|++.++ .+++..+...|+-.. +..+..++..-+|.+.+.+.-+|......|++.
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~-------------~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~- 117 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADS-------------SLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG- 117 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccc-------------hHHHHhhhhccCcccHHHHHHHHHHHHHhcchH-
Confidence 34444444 69999999 999999999997765 688888888899999998888999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 112 TKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 112 ~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
+|...+.++..++|+|+.+|..+|.+|.+.|+. ++|...|.+++++.|+.
T Consensus 118 ---------~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~--------------------~~Ar~ay~qAl~L~~~~- 167 (257)
T COG5010 118 ---------EAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF--------------------DEARRAYRQALELAPNE- 167 (257)
T ss_pred ---------HHHHHHHHHhccCCCChhhhhHHHHHHHHccCh--------------------hHHHHHHHHHHHhccCC-
Confidence 899999999999999999999999999998766 99999999999999998
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.+..++|..|.-.|+++.|..++..+....+.+..
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 699999999999999999999999999887776653
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=1.1e-09 Score=101.24 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=167.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+-++=++..+...|++++|+.++.+. .-.+...++...|+++..+|+ +++|...+...++.+|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~-------------~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGR-------------KEEAEKIYRELIDRNPD 70 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCC
Confidence 345566788888999999999999886 467788899999999999884 47799999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccc--hHHHHHhHHH---------------------------HHHHHHHHHcc----------
Q psy11738 92 HYAIHKWLAVILNEKATLEG--TKARIQQLET---------------------------IKHHMNKAIEL---------- 132 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------------a~~~~~~al~l---------- 132 (323)
|...+..+..+++....... .......+.+ +..++...+..
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk 150 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK 150 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99998888888744442111 0000000000 00111111110
Q ss_pred ----CCC-------------------------------Ch----hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 133 ----KPD-------------------------------DS----TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 133 ----~p~-------------------------------~~----~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
+|. .| .+++.++..|... |++
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~--------------------g~~ 210 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL--------------------GDY 210 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh--------------------CCH
Confidence 000 01 1223344443333 566
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+.++++|++..|+. ++.++..|.+|.+.|++++|..+++.|-++|+.|-.. ..+.+..++. .
T Consensus 211 ~~Al~~Id~aI~htPt~-~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi-----------NsK~aKy~LR---a 275 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTL-VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI-----------NSKCAKYLLR---A 275 (517)
T ss_pred HHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH-----------HHHHHHHHHH---C
Confidence 99999999999999997 7999999999999999999999999999998776321 1112222222 6
Q ss_pred CcHHHHHHHHHHHHhhCCcchh------hhh--HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYS------QNV--LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~------~~~--~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
|+.++|...+..-+.-+-+... -.| ..-|.+|.+.|++..|+..|..+.++
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8899999888776655421101 123 44599999999999999999888766
No 89
>KOG1127|consensus
Probab=99.33 E-value=1.8e-10 Score=108.97 Aligned_cols=207 Identities=16% Similarity=0.059 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.+...|+..+-++++++|..+.++..+|.+|...-+.. .|..+|.+|.++||.+..++-..+..|.+..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~----------RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK----------RAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 34788999999999999999999999999998877555 78999999999999999999999988887776
Q ss_pred CcHHHHH--------------HHHHhhcC--CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 153 MPWYQRK--------------IANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 153 ~~~~~~~--------------~~~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+...... ......+. ++.+....|+.+|+-+++.+|.+ ...|..+|.+|...|++.-|++.|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhh
Confidence 6322111 11111222 35677899999999999999998 5999999999999999999999999
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc------hhhhhHHHHHHHHHhcC
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~------~~~~~~~lg~~y~~~g~ 290 (323)
+|..++|.+...++ ..+-+ ..+.|+|.+|+..+...+...... .+..+.+++..+.-.|=
T Consensus 621 kAs~LrP~s~y~~f-k~A~~-------------ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf 686 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRF-KEAVM-------------ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF 686 (1238)
T ss_pred hhHhcCcHhHHHHH-HHHHH-------------HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999998865433 11111 113789999999888877654432 12345555555555666
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
...|..+++++++.
T Consensus 687 ~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 687 QKKAVDFFEKSIES 700 (1238)
T ss_pred hhhhhHHHHHHHHH
Confidence 66777777776654
No 90
>KOG3060|consensus
Probab=99.32 E-value=4.5e-10 Score=91.27 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+.+-|..++++.-..-|....+-...|..+...|++. +|+++|+..++-||.|...+...-.+.-.+|
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~----------~A~e~y~~lL~ddpt~~v~~KRKlAilka~G-- 134 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK----------EAIEYYESLLEDDPTDTVIRKRKLAILKAQG-- 134 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh----------hHHHHHHHHhccCcchhHHHHHHHHHHHHcC--
Confidence 4566899999988888999999888899999999998 8999999999999999887765444444444
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+-.+||+.+.+-++..+++ .++|..++.+|...|+|++|.-||+..+-+.|.++.-
T Consensus 135 ------------------K~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~----- 190 (289)
T KOG3060|consen 135 ------------------KNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY----- 190 (289)
T ss_pred ------------------CcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----
Confidence 3389999999999999998 7999999999999999999999999999999998632
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~ 286 (323)
...++..+|-.....+++-|..+|.++++++|.+ .+.++.+-.|-.
T Consensus 191 ------f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~ 236 (289)
T KOG3060|consen 191 ------FQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGS 236 (289)
T ss_pred ------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHH
Confidence 2223333332333568899999999999999976 577666654443
No 91
>KOG4162|consensus
Probab=99.32 E-value=1.6e-09 Score=100.24 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhccCC-----CCcHHHHHHHHHHHHHhhcccch-HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQH-----EDHYAIHKWLAVILNEKATLEGT-KARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.+.+++++.|..+++... --.+.++..+|++|+.+...... ..+.....++.+.++++++.+|+|+.+.++++.
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 456788999999998832 22455788899999988765533 234456668889999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
-|-..+++ +.|..+.++++++++++.+.+|..|+.++.-.+++..|+...+.++...|+|
T Consensus 487 q~A~~R~l--------------------~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 487 QYAEQRQL--------------------TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHHHHhH--------------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 88877766 9999999999999777667899999999999999999999999999888874
No 92
>KOG3060|consensus
Probab=99.32 E-value=1.9e-10 Score=93.44 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=135.5
Q ss_pred HHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 24 LFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 101 (323)
.+-.|+.+-|..+++.+ ++|+...+...-|.-+-..| ++++|+++++..++-||.|.-++...-.
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-------------~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-------------NYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-------------chhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 34468888888888876 57888776666666665544 6678999999999999999999887777
Q ss_pred HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q psy11738 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 181 (323)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 181 (323)
+.-.+|+.. +|++.+...++..|.|.++|+.++.+|+..+++ ++|.-+++
T Consensus 129 ilka~GK~l----------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f--------------------~kA~fClE 178 (289)
T KOG3060|consen 129 ILKAQGKNL----------EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF--------------------EKAAFCLE 178 (289)
T ss_pred HHHHcCCcH----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH--------------------HHHHHHHH
Confidence 777788777 788899999999999999999999999999766 99999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCH---HHHHHHHHHHhCCCCCCch
Q psy11738 182 EAEKQHPLFYSQNVLMLGKTYMRLENY---EQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 182 ~al~~~p~~~~~~~~~lg~~y~~~g~~---~~A~~~~~~al~~~~~~~~ 227 (323)
+.+=+.|.+ +..+..+|.+++-+|.. .-|.++|.++++++|++..
T Consensus 179 E~ll~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 179 ELLLIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 999999998 68889999999888864 4699999999999996543
No 93
>PRK11906 transcriptional regulator; Provisional
Probab=99.31 E-value=1.5e-10 Score=102.67 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhhc---cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 74 LILSAYFLVYNAL---PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 74 ~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
..+.|+.+|.+|+ +++|..+.++-+++.|+.......... ......+|.++..+|++++|.|+.++..+|.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4577999999999 999999999999999988764432222 334555888999999999999999999999988777
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+++ +.|+..|++|+.++|+. +.+++..|.+....|+.++|+.+++++++++|.-..+..
T Consensus 352 ~~~--------------------~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 352 GQA--------------------KVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred cch--------------------hhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 655 99999999999999997 799999999999999999999999999999998654433
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++ |. ..++ ....++|+..|-+-.+..
T Consensus 411 ~~~----~~-----~~~~----~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 411 IKE----CV-----DMYV----PNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHH----HH-----HHHc----CCchhhhHHHHhhccccc
Confidence 222 21 1111 345678887776654433
No 94
>KOG0495|consensus
Probab=99.30 E-value=2.6e-09 Score=97.28 Aligned_cols=257 Identities=16% Similarity=0.071 Sum_probs=190.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+.....+..++.+...+.++=|...|..+ .+|..-.+|.+.+..-..-|. .++-..++++|+..-
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt-------------~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-------------RESLEALLQKAVEQC 580 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-------------HHHHHHHHHHHHHhC
Confidence 33444677888888888888888888876 488888887777665554443 244567788888888
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
|+....+...+.-+-..|+.- .|+..+..|++.+|++.+.|..--.+.+....+....+.++.++....
T Consensus 581 pkae~lwlM~ake~w~agdv~----------~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVP----------AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcH----------HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 877776666666666666665 667778888888888777776655555555444444444333322110
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcch
Q psy11738 169 ------------PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDM 236 (323)
Q Consensus 169 ------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 236 (323)
.++..++|++.++++++..|++ ...|+++|.++.++++.+.|.+.|...++..|+...... .++.+
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl-lLakl 728 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL-LLAKL 728 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH-HHHHH
Confidence 1344599999999999999997 699999999999999999999999999999999865422 22111
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.. ..|....|...+.++.-.+|.+ ...|...-..-.+.|..+.|.....+||.--|.
T Consensus 729 ---eE----------k~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 729 ---EE----------KDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred ---HH----------HhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 11 1457889999999999999998 788888888888999999999999998877665
No 95
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.29 E-value=1.8e-10 Score=106.76 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.-|.+.+++-..-+....+.... .+.+..|+.+|++|++++|+++.++..++.++.....+....+ ....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~--------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~--~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGD--------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE--KQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH--HHHH
Confidence 46777777765555544443332 2357789999999999999999999999988877655543111 1223
Q ss_pred HHHHHHHHHHcc--CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 121 TIKHHMNKAIEL--KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 121 ~a~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
.+.+...+++.+ +|.++.++..+|..+...|++ ++|..++++|+.++|+ ..+|..+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~--------------------~~A~~~l~rAl~L~ps--~~a~~~l 459 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKT--------------------DEAYQAINKAIDLEMS--WLNYVLL 459 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcCCC--HHHHHHH
Confidence 555667777774 888888999999887776554 9999999999999995 4899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
|.++...|++++|++.|++|+.++|.++.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999874
No 96
>KOG1156|consensus
Probab=99.26 E-value=3.7e-09 Score=96.15 Aligned_cols=274 Identities=14% Similarity=0.105 Sum_probs=171.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.-|+..+.+--+|-.+-..|+-++|....... .++...--|.-+|-++.... .|++|+.+|..|+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-------------~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-------------KYDEAIKCYRNAL 102 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-------------hHHHHHHHHHHHH
Confidence 45667788888899999999999999988876 36666555656666654433 6788999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.++|+|...+.-++.+...++++.+ ....-.+.+++.|.+-..|..++..+.-.|++......+......
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~----------~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEG----------YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984 334455667777777766766666666655442211111110000
Q ss_pred C--------------------------------------------------------CCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 167 T--------------------------------------------------------LPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 167 ~--------------------------------------------------------~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
. ...+++++|+..|...+..+|++
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 0 12345566666666666666665
Q ss_pred hhHHHHHHHHHHHHcCCHHHHH-HHHHHHhCCCCCCchhhhh-------------------------------hhcchhH
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAA-YYLEMTKNYPVKQDKDQCF-------------------------------EITDMPW 238 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~ 238 (323)
...+..+-.++-...+.-+++ ..|...-+..|....-..+ .+..+.-
T Consensus 253 -~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 253 -LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 233333333332222222333 3333333333332100000 0000000
Q ss_pred ------HHHHHHHHhhc--------------------------------cCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 239 ------YQRKIANAIFD--------------------------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 239 ------~~~~~a~~~~~--------------------------------~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+...++..+.. ....|+++.|+.+...|+.-.|.. ...+..
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl-iEly~~ 410 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL-IELYLV 410 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH-HHHHHH
Confidence 00011111100 011477999999999999999998 788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
-|.++.+.|++++|..++..+-+++..
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhccch
Confidence 999999999999999999999999655
No 97
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=7.1e-11 Score=105.23 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=104.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
..+..+|..++..|+|++|+.++.++ .+|+++.+++.+|.+|..+|+ +++|+..+++++.++|.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-------------~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-------------FTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCcCC
Confidence 45788999999999999999999998 599999999999999999885 567999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.+++.+|.++..+|++. +|+..|+++++++|+++.+...++.+...+
T Consensus 70 ~~a~~~lg~~~~~lg~~~----------eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQ----------TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999886554
No 98
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.25 E-value=1e-08 Score=102.60 Aligned_cols=258 Identities=10% Similarity=0.040 Sum_probs=118.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcccCCCCc-----------H-----------HHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESSE---YKEDVEIIWRLVRVKYNLATHSSSLS-----------D-----------ADK 71 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~la~~y~~~~~~~~~~~-----------~-----------~~~ 71 (323)
+-.....+.+.|++++|..+++.+. -.-+..++..+...|...|+...... + --+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3344444555566666666555541 12244555555555555554322100 0 001
Q ss_pred HHHHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhH
Q psy11738 72 KQLILSAYFLVYNALP----QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMW 146 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~ 146 (323)
.+.+++|...++.... +.|+ ...+..+-..|...|+++ +|.+.|+.+.+.+ +.+...|..+...
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ld----------eA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVD----------RAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 2234556666666543 3443 334444555566666665 6666676666665 3455566666666
Q ss_pred HHHhcCCcHHHHHHHHHhhc---------------CCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHH
Q psy11738 147 CFEITDMPWYQRKIANAIFD---------------TLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~ 209 (323)
|...|++......+...... -...|++++|...|....+.. |+ ..++..|..+|.+.|+++
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHH
Confidence 66666542221111111100 012344455555555555432 22 244555555555555555
Q ss_pred HHHHHHHHHhCC--CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh--hCCcchhhhhHHHHHHH
Q psy11738 210 QAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 210 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--~~p~~~~~~~~~lg~~y 285 (323)
+|.+.|++..+. .|+.. .+.. +...+ ...|++++|++.|.+... +.|+ ...+..+-.++
T Consensus 702 eA~~lf~eM~~~g~~Pdvv--tyN~----------LI~gy---~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~a~ 764 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVS--TMNA----------LITAL---CEGNQLPKALEVLSEMKRLGLCPN--TITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH--HHHH----------HHHHH---HHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Confidence 555555544332 12110 0000 01111 114555555555554432 2343 23444455555
Q ss_pred HHhcCHHHHHHHHHHhhCC
Q psy11738 286 MRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~ 304 (323)
...|+.++|...+.+.++.
T Consensus 765 ~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 5555555555555555543
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=8.4e-11 Score=104.76 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
++++|+.+|.++++++|+++.++..+|.++..+|++. +|+..+++++.++|+++.+++.+|.+++.+|++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~----------eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT----------EAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 5678999999999999999999999999999999998 899999999999999999999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++|+.+|+++++++|++ ..+...++.|..++.
T Consensus 87 --------------------~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 87 --------------------QTAKAALEKGASLAPGD-SRFTKLIKECDEKIA 118 (356)
T ss_pred --------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999998 688888998876664
No 100
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=2.4e-11 Score=81.61 Aligned_cols=68 Identities=29% Similarity=0.456 Sum_probs=63.1
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAY 213 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~ 213 (323)
+++..|..+|.+++..+++ ++|+.+|+++++++|++ +.+++++|.+|..+| ++++|+.
T Consensus 1 e~a~~~~~~g~~~~~~~~~--------------------~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDY--------------------EEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHH--------------------HHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHH
Confidence 3678899999999998765 99999999999999998 799999999999999 7999999
Q ss_pred HHHHHhCCCC
Q psy11738 214 YLEMTKNYPV 223 (323)
Q Consensus 214 ~~~~al~~~~ 223 (323)
.++++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999987
No 101
>KOG1130|consensus
Probab=99.21 E-value=1.5e-11 Score=106.11 Aligned_cols=262 Identities=15% Similarity=0.128 Sum_probs=130.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH------hhc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY------NAL 86 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~------~al 86 (323)
-++-.+|+++.+.|+++.-+.+++.+. -.++ +-.+.-+|+.+|+.... .+.|.+|++|-. +.+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeD---l~tLSAIYsQLGNAyfy------L~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTED---LSTLSAIYSQLGNAYFY------LKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchH---HHHHHHHHHHhcchhhh------HhhHHHHHhhhhhhHHHHHHh
Confidence 346779999999999999999999872 2222 23345566666655443 334444554432 222
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHhhHHHHhcCCcHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
.-.-..+.+--++|.++-.+|.+. +|+-++.+-+.+.. ....++|++|.+|...|..-....--
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fd----------eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe 158 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFD----------EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE 158 (639)
T ss_pred cchhccccccccccchhhhhcccc----------hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh
Confidence 111112223345667777777777 66666555554432 25678999999999887541100000
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--h---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh--hhh
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLF--Y---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC--FEI 233 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~ 233 (323)
...-|+..-...++.|+++|..-+++...- . ..++-+||..|+-+|+|++|+.+-+.-+.+....-+... ...
T Consensus 159 e~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~ 238 (639)
T KOG1130|consen 159 EKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAH 238 (639)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 000000000011255556665555542110 0 134555666666666666666665554444221110000 011
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC-----CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~-----p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++++... .-.|+++.|+++|++++.+- ....+..++.||..|.-..+++.|+.|+.+-+.|.
T Consensus 239 sNlgN~h----------iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 239 SNLGNCH----------IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred cccchhh----------hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 01355666666666554431 11113445666666666666666666665555443
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=4.2e-10 Score=90.04 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=97.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+|..+.+++.+|..+...|++. +|+.+|++++++.|+. +.+++.+|.++...|++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------- 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYA----------EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------- 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-----------
Confidence 34566667888899998889888 8889999999887764 46888999998888765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+.+|.+++++.|++ ..++..+|.+|..+|+...+...++.++.
T Consensus 89 ---------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------------ 134 (172)
T PRK02603 89 ---------DKALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------------ 134 (172)
T ss_pred ---------HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------------
Confidence 99999999999999997 68899999999999998777666555432
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+++|+..+++++..+|++
T Consensus 135 ----------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 135 ----------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ----------HHHHHHHHHHHHHhhCchh
Confidence 3567888888888888875
No 103
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.1e-10 Score=93.38 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.+.-+.-++.-+..+|++++.|..+|.+|...|++. .|...|.+|+++.|++++.+-.+|.+++...+-
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~- 206 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS----------DALLAYRNALRLAGDNPEILLGLAEALYYQAGQ- 206 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-
Confidence 566777888899999999999999999999999999 788889999999999999999999988766532
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
..-.++...|++++++||++ ..+.+.||..+...|+|.+|+..++..++..|.+...
T Consensus 207 ----------------~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 207 ----------------QMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred ----------------cccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 22389999999999999998 6999999999999999999999999999998887654
No 104
>KOG1127|consensus
Probab=99.19 E-value=1.3e-09 Score=103.36 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=131.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+..+|-++++++|.-+.++-.||.+|...-+. ..|.++|.+|.++||++ ..+.-.++.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm--------------------~RA~kCf~KAFeLDatd-aeaaaa~ad 534 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDM--------------------KRAKKCFDKAFELDATD-AEAAAASAD 534 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhcCCchh-hhhHHHHHH
Confidence 677889999999999999999999988765554 88999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|.+..+++.|....-++-+.+|.-. ....|..+++. ....+++..|+..|+.++..+|.+ ...|..
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a~~-------~k~nW~~rG~y-----yLea~n~h~aV~~fQsALR~dPkD-~n~W~g 601 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPAFA-------CKENWVQRGPY-----YLEAHNLHGAVCEFQSALRTDPKD-YNLWLG 601 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchHHH-------HHhhhhhcccc-----ccCccchhhHHHHHHHHhcCCchh-HHHHHH
Confidence 99999999999999766666554422 12223332211 234688999999999999999999 699999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
||.+|...|++..|.+.|.+|..++|.+...
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 9999999999999999999999999996553
No 105
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-09 Score=91.65 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+-+.-+.-.+..+..+|++ ...|..||.+|+..|++..|...|.+|.++.|++.+... .++.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~-----------g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL-----------GLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHhc
Confidence 3477788888999999998 799999999999999999999999999999999876422 3344444444
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHHHh
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEKAKS 319 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~~~ 319 (323)
+...-.++...|.+++.++|++ ..+.+.||..+...|++.+|...|++.++. +|+..-...+++...
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 205 GQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 4555678999999999999999 899999999999999999999999999998 555555566665543
No 106
>KOG1128|consensus
Probab=99.19 E-value=1.2e-09 Score=100.57 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|+++.++|+.+++++|-. ..+|+.+|-|..+.+++..|.++|...+.++|++..... .+ +.++..
T Consensus 499 ~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn-Nl----------s~ayi~- 565 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN-NL----------STAYIR- 565 (777)
T ss_pred hhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh-hh----------hHHHHH-
Confidence 45699999999999999987 688999999999999999999999999999998865432 11 111111
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++-.+|...+++|++.+-+. +..|.+--.+....|.++.|+..|.+.+.++.+
T Consensus 566 --~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 566 --LKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred --HhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 355678888888888888665 677888888888999999999999988887555
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=9.2e-09 Score=91.09 Aligned_cols=107 Identities=15% Similarity=0.068 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|....+.|-.+..++..+++. .|...+...++..|+|+..+...|.++...+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d----------~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~---------------- 356 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYD----------EALKLLQPLIAAQPDNPYYLELAGDILLEANKA---------------- 356 (484)
T ss_pred ccchHHHHHHHHHHHHhcccc----------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------------
Confidence 444555555555555555555 444455555555555555555555555554433
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.+|++.+++++.++|+. ....+++|.+|...|++.+|+..++..+.-+|.++.
T Consensus 357 ----~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 357 ----KEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred ----HHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 55555555555555554 355555555555555555555555555555555543
No 108
>PRK11906 transcriptional regulator; Provisional
Probab=99.19 E-value=1.7e-09 Score=96.01 Aligned_cols=202 Identities=8% Similarity=-0.066 Sum_probs=141.6
Q ss_pred hccCCCCcH---HHH----HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHH---ccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 85 ALPQHEDHY---AIH----KWLAVILNEKATLEGTKARIQQLETIKHHMNKAI---ELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 85 al~~~p~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+...-|.+. ++| +..|......+..+ ....|..+|.+|+ +++|+.+.++-.++.+++...-.+
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~-------~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g 312 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPE-------SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG 312 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHH-------HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc
Confidence 455557766 554 44454444444333 2337888999999 999999999999999998765444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
|.. .-. .-.+|.++-++|++++|++ +.++..+|.++...++++.|+..|++|+.++|+.....+
T Consensus 313 ~~~-~~~----------~~~~a~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~---- 376 (458)
T PRK11906 313 KSE-LEL----------AAQKALELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYY---- 376 (458)
T ss_pred CCC-chH----------HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHH----
Confidence 433 111 2289999999999999998 799999999999999999999999999999999876533
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l 314 (323)
.......+ .|+.++|++.+.+++.++|.-.......+-.-.+--...++|+..|-+-.+...+.-.-+.+
T Consensus 377 -----~~~~~~~~-----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (458)
T PRK11906 377 -----YRALVHFH-----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNI 446 (458)
T ss_pred -----HHHHHHHH-----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccchhhHHHH
Confidence 22222111 58899999999999999997532333333331334456788888776655554444333334
Q ss_pred HHHHh
Q psy11738 315 EKAKS 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
-+.++
T Consensus 447 ~~~~~ 451 (458)
T PRK11906 447 LKLKQ 451 (458)
T ss_pred HHHHH
Confidence 44444
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=3.3e-08 Score=87.65 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=129.8
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
.+|.-..++|..+..++..+.+ ++|.+.+...+...|+| +..+-..+.++.+.|+.++|
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~--------------------d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQY--------------------DEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hCccchHHHHHHHHHHHHhccc--------------------chHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHH
Confidence 3488899999999999998766 99999999999999998 68888899999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
.+.+++++.++|.... .....+.+++. .|++.+|+..+.+.+.-+|++ +..|..||.+|..+|+.
T Consensus 360 ~e~~~kal~l~P~~~~-----------l~~~~a~all~---~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~ 424 (484)
T COG4783 360 IERLKKALALDPNSPL-----------LQLNLAQALLK---GGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHhcCCCccH-----------HHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhCch
Confidence 9999999999998732 12223444443 688999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 292 EQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
.+|...+.+.+.+.-. .++.+.+..+++..
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999988888877444 55567777776654
No 110
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.17 E-value=5.7e-08 Score=97.28 Aligned_cols=268 Identities=11% Similarity=0.056 Sum_probs=129.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCc----------------------H
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLS----------------------D 68 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~----------------------~ 68 (323)
...+-.....+...|++++|..++..+ ....+...+..+..+|...|+...... .
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445566677889999999999887 244567788888899988886432100 0
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----cCCCChhHHHH
Q psy11738 69 ADKKQLILSAYFLVYNALP--QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----LKPDDSTTLFM 142 (323)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----l~p~~~~~~~~ 142 (323)
--+.+++++|+..|+...+ +.|+ ...+..+...|...|+++ +|.+.|.+... +.|+ ...+..
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~d----------eA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVD----------RAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 0122334444444444322 2232 223333334444444433 45555555543 2333 234444
Q ss_pred HhhHHHHhcCCcHHHHHHHHHhhcC---------------CCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHc
Q psy11738 143 LGMWCFEITDMPWYQRKIANAIFDT---------------LPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 143 lg~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~ 205 (323)
+...|...|++....+.+....... ...|++++|++.|.+..+. .|+ ..++..+...|.+.
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~ 662 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhC
Confidence 4445555544422211111111100 0223444444444444433 233 13344444444444
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh--hCCcchhhhhHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLMLGK 283 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--~~p~~~~~~~~~lg~ 283 (323)
|++++|.+.++...+.........+ ..+..++ ...|++++|+..|.+... ..|+ ...|..|..
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~ty----------nsLI~ay---~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~ 727 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSY----------SSLMGAC---SNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT 727 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----------HHHHHHH---HhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 4444444444444432211100000 0111111 125677777777776644 3554 356777777
Q ss_pred HHHHhcCHHHHHHHHHHhhC--CCChhHH
Q psy11738 284 TYMRLENYEQAAYYLEMTKN--YPAVQEA 310 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~--~~~~~~~ 310 (323)
.|.+.|+.++|.+.|.+... +.|+...
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 77777777777777776543 3455443
No 111
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.15 E-value=1.3e-08 Score=99.33 Aligned_cols=248 Identities=12% Similarity=-0.016 Sum_probs=122.9
Q ss_pred hhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYAIHK 97 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 97 (323)
..+.+.+.|++++|..+++.... .++..|..+...|...|+. ++|+..|+...+ ..|+ ...+.
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~-------------~eA~~lf~~M~~~g~~pd-~~t~~ 329 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYS-------------EEALCLYYEMRDSGVSID-QFTFS 329 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCC-HHHHH
Confidence 45666667777777777777543 3555666677777666643 334444444332 2232 22333
Q ss_pred HHHHHHHHhhcccchHH-------------------------HHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 98 WLAVILNEKATLEGTKA-------------------------RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.+...+...|+++.+.+ +.+...+|.+.|++..+ .|...|..+...|...|+
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC
Confidence 34444444444431110 00111145555554432 234455555555555554
Q ss_pred CcHHHHHHHHHhh---------------cCCCCCCHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 153 MPWYQRKIANAIF---------------DTLPTSSYEEALKYFLEAEKQ---HPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 153 ~~~~~~~~~~~~~---------------~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
.......+..... .-...|..++|.+.|+...+. .|+ ...|..+..+|.+.|++++|.+.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcCCHHHHHHH
Confidence 4211111111000 001234445555555555432 333 24455555666666666666665
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
+++. ...|+.. . +..+..+.. ..|+++.|...+++.+.+.|++ ...|..|+.+|...|++++|
T Consensus 485 ~~~~-~~~p~~~---~---------~~~Ll~a~~---~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 485 IRRA-PFKPTVN---M---------WAALLTACR---IHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHC-CCCCCHH---H---------HHHHHHHHH---HcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhCCCHHHH
Confidence 5543 1122110 0 011111111 1467777777777777777776 56677778888888888888
Q ss_pred HHHHHHhhCC
Q psy11738 295 AYYLEMTKNY 304 (323)
Q Consensus 295 ~~~~~~al~~ 304 (323)
.+.+++..+.
T Consensus 548 ~~v~~~m~~~ 557 (697)
T PLN03081 548 AKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHc
Confidence 8777665443
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=2.5e-09 Score=85.08 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.|...-|...|.+++.+.|+-|+++..+|..+...|+++ .|.+.|+..+++||.+.-++.+.|..++..|
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd----------aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch----------HHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 456677999999999999999999999999999999999 6778899999999999999999998887765
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHcCCHHHHHHH-HHHHhCCCCCCchhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY-MRLENYEQAAYY-LEMTKNYPVKQDKDQ 229 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y-~~~g~~~~A~~~-~~~al~~~~~~~~~~ 229 (323)
+|.-|.+.|.+-.+.||+++ +..|...+ ...-++.+|... .+++...+.......
T Consensus 148 --------------------R~~LAq~d~~~fYQ~D~~DP---fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~ 204 (297)
T COG4785 148 --------------------RYKLAQDDLLAFYQDDPNDP---FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN 204 (297)
T ss_pred --------------------chHhhHHHHHHHHhcCCCCh---HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHH
Confidence 45999999999999999974 22222222 233456666554 555555543332211
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. ..-+++..+. + ..++++.....+ ....+++.||+-|...|+.++|...|+-|+.
T Consensus 205 i-------------V~~yLgkiS~----e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 205 I-------------VEFYLGKISE----E--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred H-------------HHHHHhhccH----H--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 0111121111 1 111222211111 1135799999999999999999999998876
Q ss_pred CCC
Q psy11738 304 YPA 306 (323)
Q Consensus 304 ~~~ 306 (323)
-+-
T Consensus 266 nnV 268 (297)
T COG4785 266 NNV 268 (297)
T ss_pred HhH
Confidence 543
No 113
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=3.1e-09 Score=84.67 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHh
Q psy11738 76 LSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEI 150 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~ 150 (323)
..+...+...++.++.. ..+++.+|.++...|+++ +|...|.+++.+.|+. +.++.++|.++...
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA----------EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 33455555555566555 556688899999899988 8999999999998764 45899999999998
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~ 207 (323)
|++ ++|+..|+++++++|.. ..++.++|.+|...|+
T Consensus 86 g~~--------------------~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 86 GEH--------------------TKALEYYFQALERNPFL-PQALNNMAVICHYRGE 121 (168)
T ss_pred CCH--------------------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhH
Confidence 765 99999999999999997 6889999999995554
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.12 E-value=1.3e-09 Score=76.88 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+++.+|.++...|++. +|...+.++++..|.++.++..+|.++...+++ +
T Consensus 2 ~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 51 (100)
T cd00189 2 ALLNLGNLYYKLGDYD----------EALEYYEKALELDPDNADAYYNLAAAYYKLGKY--------------------E 51 (100)
T ss_pred HHHHHHHHHHHHhcHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH--------------------H
Confidence 4677888888888888 899999999999999999999999999988766 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
+|+.+|++++...|.+ ..++..+|.++...|++++|..++++++..+|.
T Consensus 52 ~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 52 EALEDYEKALELDPDN-AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhCCCcc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999997 588999999999999999999999999988763
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=1.2e-09 Score=81.52 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++.++.+|..+...|++. +|.+.|.+++..+|++ +.+++.+|.+++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------- 55 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA----------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY---------------- 55 (119)
T ss_pred cHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------------
Confidence 356788899999999998 8999999999999987 56899999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|++++..+|++. +.+++.+|.++..+|++++|+.++++++...|.+..
T Consensus 56 ----~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 56 ----ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred ----HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999988852 467999999999999999999999999999988753
No 116
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.11 E-value=2.9e-09 Score=82.64 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
+|.-.|+.|.+.++..+..+|.+++++++-|.++..+.++....++...+.+|+.-|+.||.++|+...+++.+|.++..
T Consensus 2 ~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 2 ERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999998877888889999999999999999999999999999998
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.+.+..-.... .. -|++|..+|++|...+|++
T Consensus 82 ~A~l~~d~~~A-~~--------~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 82 LAFLTPDTAEA-EE--------YFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHH---HHHH-HH--------HHHHHHHHHHHHHHH-TT-
T ss_pred HHhhcCChHHH-HH--------HHHHHHHHHHHHHhcCCCc
Confidence 87431111111 11 2599999999999999997
No 117
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.11 E-value=1.9e-08 Score=98.21 Aligned_cols=175 Identities=10% Similarity=-0.089 Sum_probs=121.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
+......+...|....+..+...+ ....+..++..+...|...|+ +++|...|+... +.+.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------------~~~A~~vf~~m~---~~~~ 290 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-------------IEDARCVFDGMP---EKTT 290 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC-------------HHHHHHHHHhCC---CCCh
Confidence 333444555678888877665443 334466677788899988884 466899998754 4567
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC-----
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT----- 167 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~----- 167 (323)
..|..+...|...|+.+ +|.+.|.+..+.. .-+..++..+...|...|.+..............
T Consensus 291 vt~n~li~~y~~~g~~~----------eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 291 VAWNSMLAGYALHGYSE----------EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred hHHHHHHHHHHhCCCHH----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 78888999999999998 8888888886643 2245677777778888777644333332222211
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 168 ----------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 168 ----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
...|+.++|.+.|++..+ |+ ..+|..+...|.+.|+.++|++.|++....
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR--KN--LISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC--CC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 135678888888887653 44 367888888888888888888888887654
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.2e-09 Score=79.97 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|+..|.++++.+|++. +.+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------------------- 73 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP------------------------- 73 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-------------------------
Confidence 666666666666666531 24566666666666666666666666655544321
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.. +.+++.+|.++..+|++++|..++.++++..|++..
T Consensus 74 --------------------~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 74 --------------------KA-PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred --------------------cc-cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 11 356788888888888888888888888888777553
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=2e-08 Score=84.52 Aligned_cols=177 Identities=11% Similarity=0.004 Sum_probs=137.4
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH---HHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL---FMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~---~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
..+..++..|..+...|++. +|++.|++++...|..+.+. +.+|.+++..+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~----------~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-------------- 85 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK----------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-------------- 85 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH--------------
Confidence 35667788899998889998 89999999999999987765 8899999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhCCCCCCch
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLE---------------N---YEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|++.++.+|+++ +.+++.+|.++...+ | ..+|+..|++.+...|++.-
T Consensus 86 ------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 86 ------PLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred ------HHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 999999999999999873 367899998875554 1 34788999999999998853
Q ss_pred hhhh------hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 228 DQCF------EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 228 ~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.... ....++-....++.-++. .|.|.-|+.-++.+++-.|+.. ..+++.++.+|..+|..++|..+..
T Consensus 160 a~~A~~rl~~l~~~la~~e~~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 160 TTDATKRLVFLKDRLAKYELSVAEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2221 111222233334444444 6889999999999999988641 3678899999999999999988765
Q ss_pred H
Q psy11738 300 M 300 (323)
Q Consensus 300 ~ 300 (323)
.
T Consensus 237 ~ 237 (243)
T PRK10866 237 I 237 (243)
T ss_pred H
Confidence 4
No 120
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=2.9e-10 Score=76.25 Aligned_cols=68 Identities=28% Similarity=0.399 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc-CCcHHHHHHHHHhhcCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT-DMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (323)
+++..+..+|.++...+++. +|+.+|.++++++|+++.+++++|.++..+| ++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~----------~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~---------------- 54 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYE----------EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY---------------- 54 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHH----------HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------------
T ss_pred CHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------------
Confidence 36788999999999999999 9999999999999999999999999999987 45
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q psy11738 170 TSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p 188 (323)
.+|+.+|+++++++|
T Consensus 55 ----~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 55 ----EEAIEDFEKALKLDP 69 (69)
T ss_dssp ----HHHHHHHHHHHHHST
T ss_pred ----HHHHHHHHHHHHcCc
Confidence 999999999999998
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=1.6e-09 Score=86.29 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=103.9
Q ss_pred hhHHHhhccHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cH
Q psy11738 21 SDDLFEEQQFEEVNKMLESS--E--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HY 93 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~ 93 (323)
.+.+|-.+.|..+...+... . ....+..++.+|.++...|+ +++|+..+++++.+.|+ .+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~l~~~~~~~~ 72 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-------------YAEALQNYYEAMRLEIDPYDRS 72 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhccccchhhH
Confidence 44556666677766666554 2 33346777888888887774 56799999999988776 34
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC----cHHHHHHHHHhhcCCC
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM----PWYQRKIANAIFDTLP 169 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~~~~~ 169 (323)
.++..+|.++...|++. +|+..+++++.++|.+...+..+|.++...+.. +.......
T Consensus 73 ~~~~~lg~~~~~~g~~~----------eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~-------- 134 (168)
T CHL00033 73 YILYNIGLIHTSNGEHT----------KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA-------- 134 (168)
T ss_pred HHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH--------
Confidence 58999999999999999 899999999999999999999999999865522 11121211
Q ss_pred CCCHHHHHHHHHHHHhcCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~ 191 (323)
.+++|+.+|++++..+|++.
T Consensus 135 --~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 135 --WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred --HHHHHHHHHHHHHHhCcccH
Confidence 23788899999999999763
No 122
>KOG2376|consensus
Probab=99.08 E-value=5.7e-08 Score=87.77 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=144.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
...+.++...+.....|+|++|.....++ ..|++..++..-.-+... .+.|++|+...++-....
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------------~~ky~~ALk~ikk~~~~~ 76 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------------LDKYEDALKLIKKNGALL 76 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------------hhHHHHHHHHHHhcchhh
Confidence 34488999999999999999999999887 478888876544444433 336788885555433322
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
-.+.- .+..+.|.+.++..+ +|...++ -+++.+..+.+..|.++|+.+++
T Consensus 77 ~~~~~-~fEKAYc~Yrlnk~D----------ealk~~~---~~~~~~~~ll~L~AQvlYrl~~y---------------- 126 (652)
T KOG2376|consen 77 VINSF-FFEKAYCEYRLNKLD----------EALKTLK---GLDRLDDKLLELRAQVLYRLERY---------------- 126 (652)
T ss_pred hcchh-hHHHHHHHHHcccHH----------HHHHHHh---cccccchHHHHHHHHHHHHHhhH----------------
Confidence 22222 257888999999888 7777766 67788888899999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+..++-+.++ .+........-.. .+... ..+.+...|.+.-. .+-+.++. +.
T Consensus 127 ----dealdiY~~L~kn~~dd-~d~~~r~nl~a~~-----a~l~~~~~q~v~~v~e~sye---l~yN~Ac~-------~i 186 (652)
T KOG2376|consen 127 ----DEALDIYQHLAKNNSDD-QDEERRANLLAVA-----AALQVQLLQSVPEVPEDSYE---LLYNTACI-------LI 186 (652)
T ss_pred ----HHHHHHHHHHHhcCCch-HHHHHHHHHHHHH-----HhhhHHHHHhccCCCcchHH---HHHHHHHH-------HH
Confidence 77777777776654443 2222111111000 00000 22222222221111 11111111 11
Q ss_pred ccCCCCcHHHHHHHHHHHHhhC--------Cc------chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQH--------PL------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~--------p~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
..|+|.+|++.+.+|..+. .+ ....+...|+.++-.+|+.++|...|...+..+|-++..
T Consensus 187 ---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 187 ---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred ---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 2466677777666663221 00 002357789999999999999999999999998776643
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=4.6e-07 Score=78.48 Aligned_cols=259 Identities=15% Similarity=0.086 Sum_probs=171.7
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC-cH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED-HY 93 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 93 (323)
...+|-.-+..|+|.+|..++.+. ++.+. .-.+..-+++-..+|+ ++.+-.+..++-+..++ +.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd-------------~~~an~yL~eaae~~~~~~l 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGD-------------EDRANRYLAEAAELAGDDTL 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhccc-------------HHHHHHHHHHHhccCCCchH
Confidence 344555556679999999999886 44444 4445555677777775 45689999999999443 33
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-C---
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL-P--- 169 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~--- 169 (323)
.+....+.++...+++. .|..-.+++++..|.++......-++|+..|++......+........ .
T Consensus 154 ~v~ltrarlll~~~d~~----------aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 154 AVELTRARLLLNRRDYP----------AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHHHHHHHHHHhCCCch----------hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 45566677788888887 677789999999999999999999999999988655444433222110 0
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 170 -----------------TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 170 -----------------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
...-.+++..+-+-+...-.+.+..-..++.-+.+.|+.++|.+..+.+++..-+.. .
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L--- 298 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L--- 298 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H---
Confidence 000011111122211111111123455567778999999999999999988632221 0
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATK 312 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 312 (323)
..+++....++...=+...++.+...|+. +..+..||..|.+.+.+.+|..+|+.|+...|..+.-.
T Consensus 299 ------------~~~~~~l~~~d~~~l~k~~e~~l~~h~~~-p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 299 ------------CRLIPRLRPGDPEPLIKAAEKWLKQHPED-PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred ------------HHHHhhcCCCCchHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 11223344566777777777888888887 68888888888888888888888888888877755544
Q ss_pred HHHH
Q psy11738 313 LLEK 316 (323)
Q Consensus 313 ~l~~ 316 (323)
.+-+
T Consensus 366 ~la~ 369 (400)
T COG3071 366 ELAD 369 (400)
T ss_pred HHHH
Confidence 4433
No 124
>KOG1130|consensus
Probab=99.06 E-value=4.5e-11 Score=103.18 Aligned_cols=245 Identities=16% Similarity=0.174 Sum_probs=154.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC-
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED- 91 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 91 (323)
+-+.|+.++-.++|++|+..-..= +.-.+ ...-|...-++|+... -+|.|++|+.++.+-+.+...
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---klGEAKssgNLGNtlK------v~G~fdeA~~cc~rhLd~areL 128 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KLGEAKSSGNLGNTLK------VKGAFDEALTCCFRHLDFAREL 128 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hhccccccccccchhh------hhcccchHHHHHHHHhHHHHHH
Confidence 466788888899999998643220 10000 0011222333343332 266788899988887766433
Q ss_pred -----cHHHHHHHHHHHHHhhcccchHH----------HHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh
Q psy11738 92 -----HYAIHKWLAVILNEKATLEGTKA----------RIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI 150 (323)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~ 150 (323)
.+.++|++|.+|-..|+-.+... .......|.++|..-+++...- ..++-+||..||-+
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence 35578999999988887543211 1233445566666666665432 22344455555544
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
| +|+.||.+-+.-+++...+ .-.++.+||.|+.-+|+++.|+++|++++.+.-.-
T Consensus 209 G--------------------df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 209 G--------------------DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred c--------------------cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 4 4588988888777763332 12578999999999999999999999987653211
Q ss_pred ----chhh-hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------chhhhhHHHHHHHHHhcCHHHH
Q psy11738 226 ----DKDQ-CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------FYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 226 ----~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------~~~~~~~~lg~~y~~~g~~~~A 294 (323)
.++. ++++++. +.+ ...+++||+++.+-+.+-.. . .+++..||.+|..+|..++|
T Consensus 269 g~r~vEAQscYSLgNt--------ytl-----l~e~~kAI~Yh~rHLaIAqeL~DriGe-~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNT--------YTL-----LKEVQKAITYHQRHLAIAQELEDRIGE-LRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred cchhHHHHHHHHhhhH--------HHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhHHHH
Confidence 1111 1233222 112 24689999999987765332 2 36789999999999999999
Q ss_pred HHHHHHhhCC
Q psy11738 295 AYYLEMTKNY 304 (323)
Q Consensus 295 ~~~~~~al~~ 304 (323)
+.+.++.+++
T Consensus 335 l~fae~hl~~ 344 (639)
T KOG1130|consen 335 LYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHH
Confidence 9888777655
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=99.03 E-value=4.8e-09 Score=80.72 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=95.1
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
+..+..+.++..+..|..|.-++..|++ ++|...|+-....+|.+ +..++.||.|+-.+
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~--------------------~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~ 84 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRL--------------------DEAETFFRFLCIYDFYN-PDYTMGLAAVCQLK 84 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Confidence 4445666777778888888888887655 99999999999999998 68889999998888
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
++|++|+..|-.+..+ ++++ +...+..|.||
T Consensus 85 k~y~~Ai~~Y~~A~~l------------------------------------------------~~~d-p~p~f~agqC~ 115 (165)
T PRK15331 85 KQFQKACDLYAVAFTL------------------------------------------------LKND-YRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHHc------------------------------------------------ccCC-CCccchHHHHH
Confidence 8888888877666554 3444 45578899999
Q ss_pred HHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 286 MRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+.+|+.+.|+.+|..+++.+. ...+..+++.+|
T Consensus 116 l~l~~~~~A~~~f~~a~~~~~---~~~l~~~A~~~L 148 (165)
T PRK15331 116 LLMRKAAKARQCFELVNERTE---DESLRAKALVYL 148 (165)
T ss_pred HHhCCHHHHHHHHHHHHhCcc---hHHHHHHHHHHH
Confidence 999999999999999998543 334555555554
No 126
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.02 E-value=5.6e-09 Score=81.09 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh
Q psy11738 30 FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKA 107 (323)
Q Consensus 30 ~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 107 (323)
|+.|.+.++.. .+|.+++.+.++|.++..+.+..+ ..+.+..+++|+.-++.|+.++|+..++++.+|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~---g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ---GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 45565555553 699999999999999999998866 4456679999999999999999999999999999999999
Q ss_pred cccchH-HHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 108 TLEGTK-ARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 108 ~~~~~~-~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
.+.... +....+.+|.++|++|...+|+|...+..|...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 876544 334567889999999999999997766665543
No 127
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=1.3e-09 Score=76.20 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 171 SSYEEALKYFLEAEKQHPLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+.|+..|+++++.+|++ ....++.+|.||.++|++++|+.++++ .+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------------------- 53 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---------------------------- 53 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----------------------------
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----------------------------
Confidence 67899999999999999953 246678899999999999999988876 332
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
+|.. ....+.+|.|+..+|++++|+.+|+++
T Consensus 54 --------------------~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 54 --------------------DPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp --------------------HHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred --------------------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 2223 455667799999999999999999875
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=4.8e-08 Score=82.29 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=130.0
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEII---WRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~---~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.++...+..|..++..|+|++|+..++.+ ..|....+. +.+|.+|+..++ +++|+..+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-------------y~~A~~~~e~fi 96 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------------LPLAQAAIDRFI 96 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHH
Confidence 46777899999999999999999999997 477765544 889999998885 466999999999
Q ss_pred cCCCCcHH---HHHHHHHHHHHhhc-----cc---chHHHHHhHHHHHHHHHHHHccCCCChhH---HHHHhhHHHHhcC
Q psy11738 87 PQHEDHYA---IHKWLAVILNEKAT-----LE---GTKARIQQLETIKHHMNKAIELKPDDSTT---LFMLGMWCFEITD 152 (323)
Q Consensus 87 ~~~p~~~~---~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~a~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~ 152 (323)
+.+|+++. +++.+|.+...++. +. ....-.....+|+..|++.++.-|+..-+ ...+..+...+..
T Consensus 97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 99988766 55667766544431 10 01111223447888999999999987543 2222222222211
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
... .++...+. .|.|.-|+.-|+.+++.-|+. ...++..++..|..+|..++|..+...
T Consensus 177 ~e~---~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YEL---SVAEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHH---HHHHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 110 11111111 256799999999999988774 237899999999999999999887654
No 129
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.99 E-value=7.3e-10 Score=77.42 Aligned_cols=78 Identities=27% Similarity=0.379 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHccCCC--ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 119 LETIKHHMNKAIELKPD--DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
...|+..++++++.+|. +...++.+|.+++..|++ ++|+..+++ .+.+|.+ ...++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y--------------------~~A~~~~~~-~~~~~~~-~~~~~ 62 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY--------------------EEAIELLQK-LKLDPSN-PDIHY 62 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH--------------------HHHHHHHHC-HTHHHCH-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH--------------------HHHHHHHHH-hCCCCCC-HHHHH
Confidence 34899999999999996 466788899999998765 999999999 8888886 58888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.+|.|+..+|++++|+++|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 8999999999999999999875
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=7.9e-09 Score=72.77 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
+++.+|.++...| ++++|+..++++++..|.++.++..+|.++...+++. +|.+++.
T Consensus 2 ~~~~~a~~~~~~~-------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLG-------------DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE----------EALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHh-------------cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 4566777777766 4577999999999999999999999999999999888 8999999
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+++...|.+...+..+|.++...+++ ++|..++.++++.+|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKY--------------------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhH--------------------HHHHHHHHHHHccCCC
Confidence 99999999999999999999988765 9999999999998874
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=8.8e-08 Score=78.68 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=122.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--C---CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--E---YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.+.+.++..|..++..|+|.+|+..++.+ . .|--.++.+.+|.+++..|+ +..|+..+++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~-------------y~~A~~~~~~fi 69 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD-------------YEEAIAAYERFI 69 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 46678999999999999999999999987 2 34458889999999999884 566999999999
Q ss_pred cCCCCcHH---HHHHHHHHHHHhhccc-chHHHHHhHHHHHHHHHHHHccCCCChhHHHH---HhhHHHHhcCCcHHHHH
Q psy11738 87 PQHEDHYA---IHKWLAVILNEKATLE-GTKARIQQLETIKHHMNKAIELKPDDSTTLFM---LGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~---lg~~~~~~~~~~~~~~~ 159 (323)
+..|+++. +++++|.++.....-. ..........+|+..|+..++.-|+++.+... +..+-..+... .-.
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~---e~~ 146 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH---ELY 146 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH---HHH
Confidence 99988665 7788888776654221 00122345558889999999999998654322 22221111110 001
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~ 212 (323)
++...+ ..+.|..|+.-|+.+++.-|+.. ..++..++.+|..+|..+.|.
T Consensus 147 ia~~Y~---~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYY---KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH---CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH---HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 111122 23677999999999999988852 257899999999999998543
No 132
>KOG4340|consensus
Probab=98.99 E-value=1.2e-07 Score=79.20 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=123.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
..-.++...+|.+||+++..- +.|.+-..+-.+|.||+... .|..|-.+|++.-.+.|.......
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q-------------~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ-------------EFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhChHHHHHHH
Confidence 345678899999999999876 58888888999999999866 567799999999999999999888
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh--------hcC--
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI--------FDT-- 167 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~--------~~~-- 167 (323)
..+..++..+.+.++ .+.......-+.-.......-+-+.++.+++...+.-+.+.- ...
T Consensus 83 Y~AQSLY~A~i~ADA----------LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gC 152 (459)
T KOG4340|consen 83 YQAQSLYKACIYADA----------LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGC 152 (459)
T ss_pred HHHHHHHHhcccHHH----------HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchh
Confidence 889888888888733 222221111000000111112223333333322221111111 000
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 168 --LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 168 --~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
-..|.|+.|++-|+.|++...-+ +..-++++.|..+.|+++.|+++....+...
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 14578899999999999998876 5778899999999999999999987776553
No 133
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=4.4e-08 Score=91.12 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=117.3
Q ss_pred hHHHHHHhhhHHHhh---ccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEE---QQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~---~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.+=+++.+|..++.. +.+..|+.+++++ .+|+++.++-.++.+|.....+... .......+.....+++.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~-----~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPL-----DEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHhhh
Confidence 444568888888765 4588999999998 6999999999999888776555431 12345677777788766
Q ss_pred C--CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 88 Q--HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 88 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+ +|..+.+|..+|......|+++ +|...+++|+.++| +..+|..+|.++...|+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~----------~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~------------ 469 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTD----------EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN------------ 469 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH------------
Confidence 4 8888888998999888888888 89999999999999 588999999999988766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+..|++|+.++|.+
T Consensus 470 --------~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 470 --------RLAADAYSTAFNLRPGE 486 (517)
T ss_pred --------HHHHHHHHHHHhcCCCC
Confidence 99999999999999997
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=1e-08 Score=81.97 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
.+..+.+++.+|..|...|+ +++|+.++++++.+.|+. +.++..+|.++...|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-------- 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGE-------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-------- 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH--------
Confidence 55677788999999988775 567999999999887763 468899999999999998
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
+|+..+.+++.+.|+++.++..+|.++...|+..........+. ..+++|+++++++++++|++
T Consensus 90 --~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 90 --KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred --HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH------HHHHHHHHHHHHHHhhCchh
Confidence 89999999999999999999999999998876522222221111 12478888888888888876
No 135
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=1.3e-09 Score=72.03 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|++|+..|+++++.+|++ +.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 12 ~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4499999999999999998 7999999999999999999999999999999986
No 136
>PLN03077 Protein ECB2; Provisional
Probab=98.96 E-value=1.9e-07 Score=93.26 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChhHHHHHhhHHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~~~~~lg~~~~ 148 (323)
+.|++++|...|+.. +.+...|..+...|...|+.. +|.+.|++..+. .|+.. ++..+-..|.
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~----------~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~ 600 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS----------MAVELFNRMVESGVNPDEV-TFISLLCACS 600 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCCcc-cHHHHHHHHh
Confidence 345667777777775 346667777777787778777 788888887764 45543 3444444555
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK---QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
..|.+ ++|..+|+...+ +.|+ ...|..+..+|.+.|++++|.+.+++. .+.|+.
T Consensus 601 ~~g~v--------------------~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~ 657 (857)
T PLN03077 601 RSGMV--------------------TQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP 657 (857)
T ss_pred hcChH--------------------HHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH
Confidence 55544 999999999874 3666 378999999999999999999999985 344442
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.. +..+.. +.. ..++.+.+....+++++++|++ ...+..|+.+|...|++++|....+.-.+
T Consensus 658 ~~--~~aLl~----------ac~---~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 658 AV--WGALLN----------ACR---IHRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HH--HHHHHH----------HHH---HcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11 111111 111 1467888888899999999998 78899999999999999999988766543
No 137
>KOG1128|consensus
Probab=98.96 E-value=2.9e-08 Score=91.70 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=139.6
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
|+.-.-....++.+++.|-...|+.++++. +.|-....||...|+.. +|..+..+-++ .|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~-------------kaeei~~q~le-k~ 454 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHG-------------KAEEINRQELE-KD 454 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccc-------------hHHHHHHHHhc-CC
Confidence 444444566788888888888888888774 23334455666666332 24444444444 23
Q ss_pred CcHHHHHHHHHHHHHhhcccchH-----------H-------HHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTK-----------A-------RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-----------~-------~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.++..|-.+|.+.....-++.+- . +-.++.++.++|+..++++|-....|+.+|-+..+.++
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 33444444443332221111100 0 01234488899999999999999999999999888876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh-h
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC-F 231 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~ 231 (323)
+ +.|.++|..++.++|++ ..+|.+++-.|.++|+-.+|...+.+|++-+-.+....- +
T Consensus 535 ~--------------------q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 535 E--------------------QAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred h--------------------HHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 5 99999999999999998 699999999999999999999999999998733321111 1
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.+. ..+.|.+++|++.|.+.+.+..
T Consensus 594 mlv---------------svdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 594 MLV---------------SVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhh---------------hhhcccHHHHHHHHHHHHHhhh
Confidence 110 1246889999999998887643
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.95 E-value=1e-07 Score=78.34 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=124.2
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+...+..|..+...|++. +|+..|++.+...|..+ .+.+.+|.+++..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~----------~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y--------------- 58 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYE----------EAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY--------------- 58 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HH----------HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H---------------
T ss_pred CHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH---------------
Confidence 4567888999999999999 89999999999988764 5789999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHhCCCCCCchhhhh----
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLEN-----------YEQAAYYLEMTKNYPVKQDKDQCF---- 231 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~---- 231 (323)
.+|+..|++.++..|++. +.+++.+|.++..+.+ ..+|+..|+..+...|++.-....
T Consensus 59 -----~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 59 -----EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp -----HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 999999999999999862 3579999999766542 448999999999999998643221
Q ss_pred --hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHH
Q psy11738 232 --EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 232 --~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~ 295 (323)
....++-....+|..++. .|.|..|+..|..+++..|+.. ..++..++.+|..+|..+.|.
T Consensus 134 ~~l~~~la~~e~~ia~~Y~~---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 134 AELRNRLAEHELYIARFYYK---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 111222222334444443 6889999999999999988752 146788899999999988554
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.8e-06 Score=80.04 Aligned_cols=223 Identities=17% Similarity=0.105 Sum_probs=155.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC-------------------C----
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS-------------------L---- 66 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~-------------------~---- 66 (323)
+...-.-.+|..++..|++++|...+..+ ++|+|...+..+..+.......... .
T Consensus 36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r 115 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR 115 (517)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH
Confidence 33444566999999999999999999997 6999999998888887333211100 0
Q ss_pred ------cHHH--------------------------------HHHHHHHHHHHHHhhccCC----------CCcHH----
Q psy11738 67 ------SDAD--------------------------------KKQLILSAYFLVYNALPQH----------EDHYA---- 94 (323)
Q Consensus 67 ------~~~~--------------------------------~~~~~~~A~~~~~~al~~~----------p~~~~---- 94 (323)
.+++ +..-+.+-+.-+...++.. +..|.
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 0010 1111122222222222211 11222
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+++.++.+|...|++. +|.++.++||+.+|..++.+...|+++-..|++ .
T Consensus 196 ~~~~lAqhyd~~g~~~----------~Al~~Id~aI~htPt~~ely~~KarilKh~G~~--------------------~ 245 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYE----------KALEYIDKAIEHTPTLVELYMTKARILKHAGDL--------------------K 245 (517)
T ss_pred HHHHHHHHHHHhCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH--------------------H
Confidence 3355677787788777 899999999999999999999999999998876 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+|..+++.|.++|+.+ -..-...+..+.+.|+.++|.+.+..-.+-+. +.... ..-..-.|+....|.+++. .|
T Consensus 246 ~Aa~~~~~Ar~LD~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~-L~~mQc~Wf~~e~a~a~~r---~~ 319 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSN-LNDMQCMWFETECAEAYLR---QG 319 (517)
T ss_pred HHHHHHHHHHhCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccC-HHHHHHHHHHHHHHHHHHH---Hh
Confidence 9999999999999997 36666678889999999999999987655543 21111 1112334776667777665 57
Q ss_pred cHHHHHHHHHHHHhhC
Q psy11738 255 SYEEALKYFLEAEKQH 270 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~ 270 (323)
++-.|+..|..+.+..
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8889998888877664
No 140
>PLN03077 Protein ECB2; Provisional
Probab=98.91 E-value=6.7e-07 Score=89.45 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=131.6
Q ss_pred hHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHH
Q psy11738 22 DDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKW 98 (323)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 98 (323)
..+-..|+++.|..++..+ ....+..++..+...|...|+ +++|...|++..+. +...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-------------~~~A~~vf~~m~~~---d~vs~~~ 460 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-------------IDKALEVFHNIPEK---DVISWTS 460 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-------------HHHHHHHHHhCCCC---CeeeHHH
Confidence 3555667777777766655 233445566666777776663 35567777665432 3334555
Q ss_pred HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC-----------
Q psy11738 99 LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT----------- 167 (323)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (323)
+...|...|+.. +|...|.+.+.-.+-|...+..+-..+...|++..........+...
T Consensus 461 mi~~~~~~g~~~----------eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 461 IIAGLRLNNRCF----------EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred HHHHHHHCCCHH----------HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 555666666655 56666666654333333444443334444444322211111111100
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--CCCCchhhhhhhcchhHHHH
Q psy11738 168 ----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 168 ----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~ 241 (323)
...|+.++|...|... .|+ ..+|..+...|.+.|+.++|++.|++.... .|+... +..+..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~---~~d--~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~------ 597 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH---EKD--VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT--FISLLC------ 597 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc--HHHHHH------
Confidence 1235667787777765 443 366777777888888888888888876653 333211 111100
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHh---hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEK---QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~---~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+ ....|.+++|..+|....+ +.|+ ...|..+..+|.+.|+.++|.+.+++. .+.|+
T Consensus 598 ----a---~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 598 ----A---CSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred ----H---HhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 0 1125677777777776653 3454 255667777777777777777777663 34444
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=98.90 E-value=1.8e-08 Score=77.64 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
...+..+.++.-+..+..|.-++..|++. +|...|.-..-.+|.++..+..||.+++.++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~----------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-------- 87 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLD----------EAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-------- 87 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH--------
Confidence 34456778888888899999999999999 888999999999999999999999999998765
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++|+..|-.+..+++++ +...+..|.||..+|+.+.|..+|+.++..
T Consensus 88 ------------~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 88 ------------QKACDLYAVAFTLLKND-YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ------------HHHHHHHHHHHHcccCC-CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999998 688999999999999999999999999884
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.3e-07 Score=81.72 Aligned_cols=123 Identities=19% Similarity=0.099 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC--CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE--NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
.+.|.+.++..-+.+.+. ..+.+..+.+....| ++.+|...|+......+..... +.. .+.+...
T Consensus 147 ~dlA~k~l~~~~~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~----lng-------~A~~~l~- 213 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL----LNG-------LAVCHLQ- 213 (290)
T ss_dssp HHHHHHHHHHHHCCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH----HHH-------HHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH----HHH-------HHHHHHH-
Confidence 377888887777777664 333444444444455 4777888888876654443211 111 1222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH-HHHHHHHHHhhCCCChhHHH
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-EQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al~~~~~~~~~ 311 (323)
.|+|++|...+.+++..+|++ +.++.++..+...+|+. +.+.+++.+.....|.....
T Consensus 214 --~~~~~eAe~~L~~al~~~~~~-~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 214 --LGHYEEAEELLEEALEKDPND-PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp --CT-HHHHHHHHHHHCCC-CCH-HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred --hCCHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 678888888888888888887 67788888888888888 44556776666666654443
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.89 E-value=4.1e-08 Score=83.32 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|++|+..|++.++..|+.. +.+++.+|.+|...|++++|+..|+++++..|++.
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---------------------- 214 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---------------------- 214 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----------------------
Confidence 456999999999999999862 36889999999999999999998888888766542
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
.. +.+++.+|.+|..+|++++|+..|+++++..|+++..
T Consensus 215 -----------------------~~-~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 215 -----------------------KA-ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----------------------ch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 23 5678889999999999999999999999888887643
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=1.2e-07 Score=73.50 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 172 SYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
+...+...+++.++-.|+. ...+.+.+|.++...|++++|+..|++++...|+...... ....++..++.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~--------a~l~LA~~~~~ 97 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL--------ARLRLARILLQ 97 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH--------HHHHHHHHHHH
Confidence 3477777888888888885 1367888999999999999999999999997655422111 11133444443
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
.+++++|+..+..+ .-.+ +.+..+..+|.+|...|++++|+..|++|+
T Consensus 98 ---~~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 ---QGQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---cCCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78999999999763 2233 335778899999999999999999999985
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=1.4e-07 Score=81.42 Aligned_cols=161 Identities=19% Similarity=0.102 Sum_probs=80.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+..|..++..|++++|+.++++. .+.|.......+|..++ +++.|...++..-+++++..-...
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~-------------R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMN-------------RPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444444455555555544442 44454444455555444 334455555555555555444433
Q ss_pred HHHHHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 98 WLAVILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 98 ~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
..+.+-...|. +. +|.-.|+......|.++.....++.++..+|++ ++
T Consensus 170 a~awv~l~~g~e~~~----------~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~--------------------~e 219 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQ----------DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY--------------------EE 219 (290)
T ss_dssp HHHHHHHHHTTTCCC----------HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H--------------------HH
T ss_pred HHHHHHHHhCchhHH----------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH--------------------HH
Confidence 33434333332 22 445555555555555555555555555555433 66
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH-HHHHHHHHHHhCCCCCC
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-EQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al~~~~~~ 225 (323)
|...++.+++.+|++ +.++.++..+...+|+. +.+.+++.+....+|.+
T Consensus 220 Ae~~L~~al~~~~~~-~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 220 AEELLEEALEKDPND-PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHCCC-CCH-HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666666665 45666666666666665 34445555555555554
No 146
>KOG3785|consensus
Probab=98.84 E-value=3.1e-07 Score=78.51 Aligned_cols=249 Identities=13% Similarity=0.146 Sum_probs=149.2
Q ss_pred hhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
..+.++...+|+.|+.+++-. ...........+|.||+.+|++ ++|+..|+.+.+.+.-+++..
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY-------------~~Al~~Y~~~~~~~~~~~el~ 94 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY-------------EEALNVYTFLMNKDDAPAELG 94 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH-------------HHHHHHHHHHhccCCCCcccc
Confidence 467788889999999999864 2223334556689999999954 669999999999887788899
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc---HHHHHHHHHhhcCC-----
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP---WYQRKIANAIFDTL----- 168 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~----- 168 (323)
.+++.++..+|++..+ ... ....|+++.....|=.+-...++-. .+...+....-..+
T Consensus 95 vnLAcc~FyLg~Y~eA----------~~~----~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsv 160 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEA----------KSI----AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASV 160 (557)
T ss_pred hhHHHHHHHHHHHHHH----------HHH----HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 9999999999999833 222 2223333332211111111111110 00000000000000
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH-HHHHHHH
Q psy11738 169 --PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW-YQRKIAN 245 (323)
Q Consensus 169 --~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~a~ 245 (323)
....|++||..|++.+.-+|+. ...-.+++.||.++.=++-+-+.+.--++-.|++..+.........- +..+.+.
T Consensus 161 hYmR~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 0024699999999999999995 46667799999999999999998888888888886554322111100 0000000
Q ss_pred Hhh---ccCCCCcH-----------------HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 246 AIF---DTLPTSSY-----------------EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 246 ~~~---~~~~~~~~-----------------~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.-. .......| +.|++.+-..++.- +.+..+|...|..+++.++|+...+.
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhh
Confidence 000 00001112 33333333333333 34567888889999999999887754
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=2.1e-07 Score=80.56 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccCC--CC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----CC
Q psy11738 121 TIKHHMNKAIELKP--DD----STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PL 189 (323)
Q Consensus 121 ~a~~~~~~al~l~p--~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~ 189 (323)
+|++++++|+.+-- ++ ...+..+|.+|... .+++++|+++|++|+++- +.
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~-------------------~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ-------------------LGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT-------------------T--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHCCChh
Confidence 66677777776521 11 22344555555443 035599999999999872 12
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 190 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
....++..+|.++.+.|+|++|++.|++.....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 223567889999999999999999999987653
No 148
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.82 E-value=3.8e-06 Score=72.91 Aligned_cols=255 Identities=14% Similarity=0.053 Sum_probs=166.4
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKED--VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~--~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+.+.+.-.++.-+...-..|+++.|=..+.++ +-+++ .......++.....|++.. |..-..
T Consensus 111 ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a-------------A~~~v~ 177 (400)
T COG3071 111 AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA-------------ARENVD 177 (400)
T ss_pred hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh-------------HHHHHH
Confidence 4455666677777888888899999999999887 44333 4445556666666665544 899999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHh------------------h
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG------------------M 145 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg------------------~ 145 (323)
.+++..|.++.+......+|...|++......+.. +.++-.+++....-+...+ .
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-------L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK-------LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH-------HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999998888999999988743322111 1111111111111010000 0
Q ss_pred HHHHhc----CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 146 WCFEIT----DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 146 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.-.+. +-+.+.-.++.- -+..+++++|.+..+.+++..-+. .....+ -..+.+++..=++..++.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~---li~l~~~~~A~~~i~~~Lk~~~D~--~L~~~~--~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAER---LIRLGDHDEAQEIIEDALKRQWDP--RLCRLI--PRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHH---HHHcCChHHHHHHHHHHHHhccCh--hHHHHH--hhcCCCCchHHHHHHHHHHHh
Confidence 000000 000000000000 012356799999999999986663 312222 235778889999999999999
Q ss_pred CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 222 PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.|+++.. ..+++.++ ++ .+.|.+|-++|+.+++..|. ...+..+|.++..+|+..+|..+++.+
T Consensus 324 h~~~p~L-~~tLG~L~----------~k---~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 324 HPEDPLL-LSTLGRLA----------LK---NKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CCCChhH-HHHHHHHH----------HH---hhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9988732 22333332 22 57899999999999999997 467899999999999999999999999
Q ss_pred hCC
Q psy11738 302 KNY 304 (323)
Q Consensus 302 l~~ 304 (323)
+.+
T Consensus 388 L~~ 390 (400)
T COG3071 388 LLL 390 (400)
T ss_pred HHH
Confidence 854
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=5.9e-08 Score=82.37 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-HHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 94 AIHKWLAVIL-NEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
...+..+..+ ...+++. +|+..|++.++..|++ +.+++.+|.+++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~----------~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~---------------- 196 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQD----------DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK---------------- 196 (263)
T ss_pred HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------------
Confidence 4556666655 3456777 8999999999999998 57999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++..|++ .+.+++.+|.++..+|++++|+..|+++++..|++..
T Consensus 197 ----~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 197 ----DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999988874 2478999999999999999999999999999998753
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=1.5e-08 Score=66.89 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
.+|..+...|++. +|++.|+++++.+|+++.+++.+|.+++..|++ ++|+
T Consensus 2 ~~a~~~~~~g~~~----------~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~--------------------~~A~ 51 (65)
T PF13432_consen 2 ALARALYQQGDYD----------EAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY--------------------DEAL 51 (65)
T ss_dssp HHHHHHHHCTHHH----------HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H--------------------HHHH
T ss_pred hHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------HHHH
Confidence 5688888889888 899999999999999999999999999998765 9999
Q ss_pred HHHHHHHhcCCCc
Q psy11738 178 KYFLEAEKQHPLF 190 (323)
Q Consensus 178 ~~~~~al~~~p~~ 190 (323)
..|+++++++|++
T Consensus 52 ~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 52 AYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHSTT-
T ss_pred HHHHHHHHHCcCC
Confidence 9999999999986
No 151
>KOG0543|consensus
Probab=98.81 E-value=5.9e-08 Score=84.46 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+|.+++.|+..++.+. +|+.++.++|.++|+|.-++|..|.++..++++
T Consensus 258 ~~~lNlA~c~lKl~~~~----------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-------------------- 307 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYK----------EAIESCNKVLELDPNNVKALYRRGQALLALGEY-------------------- 307 (397)
T ss_pred HHhhHHHHHHHhhhhHH----------HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH--------------------
Confidence 35788999999999998 899999999999999999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH-HHHHHHHhCCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPV 223 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~ 223 (323)
+.|+..|+++++++|+| ..+...|..|-.+..++.+. .+.|.+.+..-+
T Consensus 308 ~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 308 DLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999 68888888888777777654 788888887644
No 152
>KOG4648|consensus
Probab=98.81 E-value=1.4e-08 Score=86.21 Aligned_cols=237 Identities=10% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.++-++|+.+|.+|.|++||++|.+. .+|-|+-++...|.+|..+.. |..|...++.|+.++...
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-------------FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-------------FAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-------------HHHHHHhHHHHHHhhHHH
Confidence 34567899999999999999999986 589899999999999988774 455899999999999887
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+|...+..-..+|... +|++.++.++++.|++.+..-.++.+-.-. .+.|. ..++. |
T Consensus 165 ~KAYSRR~~AR~~Lg~~~----------EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~------E~~I~--~KsT~--G- 223 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNM----------EAKKDCETVLALEPKNIELKKSLARINSLR------ERKIA--TKSTP--G- 223 (536)
T ss_pred HHHHHHHHHHHHHHhhHH----------HHHHhHHHHHhhCcccHHHHHHHHHhcchH------hhhHH--hhcCC--C-
Confidence 777777776666666555 899999999999999877766655442210 11111 00000 0
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+-+|..--..++.+. .-|..+...|.++.++.+|-+-...+..+... ....+.+. .
T Consensus 224 ~~~A~Q~~~Q~l~~K---------~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L---~~~~~~~~------------K 279 (536)
T KOG4648|consen 224 FTPARQGMIQILPIK---------KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQL---RISDEDID------------K 279 (536)
T ss_pred CCccccchhhhcccc---------CcchhhhhhhccccceeEeeccccccCccccC---cccHHHHH------------H
Confidence 122222222222111 11334456677777777776655544333211 11111110 1
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
..+++.++..+.+++..+|.. ....-..|.+-.-.|...++...++.++.+.|..+.
T Consensus 280 I~~~~~~~~~~~~~~~~~~s~-~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 280 IFNSNCGIIEEVKKTNPKPTP-MPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred HhhcchhHHHHHHhcCCCCCc-CcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 345778888888998888876 344556677777788888999999999988777443
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=1.3e-07 Score=73.26 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHH
Q psy11738 75 ILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCF 148 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~ 148 (323)
...+...++..++-+|+. ..+.+.+|.++...|+++ +|...|+.++...|+. +.+...|+.++.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~----------~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD----------EAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 344666777888888887 567788899999999999 8999999999988765 457888899988
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
..|++ ++|+..++.. . ++.+.+.++..+|.+|...|++++|+..|++|+
T Consensus 97 ~~~~~--------------------d~Al~~L~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQY--------------------DEALATLQQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCH--------------------HHHHHHHHhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 87655 9999999763 2 222335778889999999999999999999885
No 154
>KOG1915|consensus
Probab=98.77 E-value=3e-05 Score=69.02 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 69 ADKKQLILSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
|++...++.|...|+-|+..-|.+ -+.+..+-..--.-|+-.|+...+-. +=+-.|++.++-+|.|.++|+.+-++
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~--KRk~qYE~~v~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG--KRKFQYEKEVSKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh--hhhhHHHHHHHhCCCCchHHHHHHHH
Confidence 345677899999999999999987 33333333333334555544332211 11124788888899999988887777
Q ss_pred HHHhcCCcHHHHHHHHH------------------------hhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHH
Q psy11738 147 CFEITDMPWYQRKIANA------------------------IFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLG 199 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg 199 (323)
--..|+...+...+..+ ++..+...+.+.+...|+.++.+-|.- .+..|++.+
T Consensus 332 ~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA 411 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYA 411 (677)
T ss_pred HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 77766654433332222 233334556788999999999997763 146688889
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
....++.+...|.+.+-.|+-..|.+..-..+ ..+ . ...++++.....|.+-++.+|.+ -.+|.
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y--Iel-----E--------lqL~efDRcRkLYEkfle~~Pe~-c~~W~ 475 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIGKCPKDKLFKGY--IEL-----E--------LQLREFDRCRKLYEKFLEFSPEN-CYAWS 475 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhccCCchhHHHHH--HHH-----H--------HHHhhHHHHHHHHHHHHhcChHh-hHHHH
Confidence 99999999999999999999999998632221 111 0 11467889999999999999998 58899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 280 MLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 280 ~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
..|..-..+|+.+.|...|+-|+..|.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999999999999999988764
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.76 E-value=1.5e-07 Score=84.07 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.++++.|+..+++..+.+|+ +...++.++...++.. +|++.+.++++..|.+...+...+.++...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~----------~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV----------EAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34688999999999999876 4566788887766555 8999999999999999999999999998876
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++ +.|++..+++.++.|+. -.+|+.|+.+|..+|++++|+-.++..--.
T Consensus 249 ~~--------------------~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KY--------------------ELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CH--------------------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 55 99999999999999998 599999999999999999999998865444
No 156
>KOG0543|consensus
Probab=98.74 E-value=1.2e-07 Score=82.57 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCC----Cchhhh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVK----QDKDQC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 269 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~----~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~ 269 (323)
.-.-|..|.+.|+|..|..-|++|++.-+. +.+... ..-..+.+ ...++-+++ ..+.|.+|+..+.+++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~-~lNlA~c~l---Kl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC-HLNLAACYL---KLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH-hhHHHHHHH---hhhhHHHHHHHHHHHHhc
Confidence 445688888999999999999998766322 111111 00001111 112222222 378899999999999999
Q ss_pred CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 270 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 270 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+|++ ..++|..|.++..+|+++.|+..|++++++.|.+.+.
T Consensus 287 ~~~N-~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 287 DPNN-VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred CCCc-hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999 8999999999999999999999999999999887653
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.72 E-value=3e-05 Score=63.60 Aligned_cols=223 Identities=22% Similarity=0.252 Sum_probs=163.1
Q ss_pred hccHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--EYKE--DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~--~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 100 (323)
.+.+..+...+... ..+. ........+..+...+. +..+...+...+. ..+.....+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGR-------------LEEALELLEKALELELLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHccc-------------HHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 35666666666554 2332 24556666666666553 4557777777776 7788888888888
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh-HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM-WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
..+...+.+. .+...+.+++...+.+.......+. ++...+++ +.|+..
T Consensus 103 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~~~ 152 (291)
T COG0457 103 LLLEALGKYE----------EALELLEKALALDPDPDLAEALLALGALYELGDY--------------------EEALEL 152 (291)
T ss_pred HHHHHHhhHH----------HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH--------------------HHHHHH
Confidence 8888888776 7888899999988888666666666 66666544 999999
Q ss_pred HHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcH
Q psy11738 180 FLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSY 256 (323)
Q Consensus 180 ~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (323)
|.+++..+|. ........++..+...++++.|+..+.+++...+.. ..... .++..+. ..+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~ 218 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL-----------NLGLLYL---KLGKY 218 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH-----------HhhHHHH---HcccH
Confidence 9999888772 334667777777889999999999999999988773 22111 1111111 14578
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+.|+..+..++...|.. ...+..++..+...+..+++...+.+++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999975 566778888888777899999999999998875
No 158
>KOG3081|consensus
Probab=98.71 E-value=7.2e-06 Score=67.69 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=120.6
Q ss_pred CCchhhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
|+++++++. +-+-.+..+|=.|+|..+|....+. ..+..++...-+.++|..+|.+....
T Consensus 1 m~~~~~g~~------d~LF~iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~------------- 61 (299)
T KOG3081|consen 1 MSSMEAGPE------DELFNIRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVI------------- 61 (299)
T ss_pred CCccccCcc------hhHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccc-------------
Confidence 455555544 3344567778899999999988887 45588899999999999999876531
Q ss_pred HHHHhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHH-HHHHHHHccCCCChhHHHHHh-hHHHHhcCCc
Q psy11738 80 FLVYNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIK-HHMNKAIELKPDDSTTLFMLG-MWCFEITDMP 154 (323)
Q Consensus 80 ~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~al~l~p~~~~~~~~lg-~~~~~~~~~~ 154 (323)
. ++.+..+. +...++.....-++-+ ... +..+..+.-...+-..+..++ .+|...+
T Consensus 62 ~------eI~~~~~~~lqAvr~~a~~~~~e~~~~----------~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~--- 122 (299)
T KOG3081|consen 62 S------EIKEGKATPLQAVRLLAEYLELESNKK----------SILASLYELVADSTDGSNLIDLLLAAIIYMHDG--- 122 (299)
T ss_pred c------ccccccCChHHHHHHHHHHhhCcchhH----------HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC---
Confidence 1 11111111 1111122221111111 111 122222222222222344443 3333333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
++++|++....... ..+...=-.++.++.+++-|...+++..+++.+.. +.
T Consensus 123 -----------------~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t------Lt 173 (299)
T KOG3081|consen 123 -----------------DFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT------LT 173 (299)
T ss_pred -----------------ChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HH
Confidence 34777666655222 23333344566677777777777777776654321 11
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+-+++ ...+++.+|.-+|+...+..|.. +......+.|++.+|++++|...++.||.-+++
T Consensus 174 QLA~awv~la------~ggek~qdAfyifeE~s~k~~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 174 QLAQAWVKLA------TGGEKIQDAFYIFEELSEKTPPT-PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHHHHh------ccchhhhhHHHHHHHHhcccCCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 1111111211 11345666666666666533322 455566666666666666666666666665444
No 159
>KOG1941|consensus
Probab=98.71 E-value=1.1e-06 Score=75.43 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=155.0
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
+.++..++.|-.++.+.++++|+....+. ..-++ .-.+--+..+.+.+|.+ ++.+.-|.....-+.
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y---------~~mL~~a~sqi~~a~ 74 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRY---------KEMLKFAVSQIDTAR 74 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHH---------HHHHHHHHHHHHHHH
Confidence 34567788999999999999998766653 22222 22223344555555533 223334444444444
Q ss_pred cCCCC--cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----hHHHHHhhHHHHhcCCcHHHHH
Q psy11738 87 PQHED--HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----TTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+.... .-+++.+++..+..+.++. +++.+-+--+.+-...+ .....+|+.+..++.+
T Consensus 75 ~~~ds~~~~ea~lnlar~~e~l~~f~----------kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f------ 138 (518)
T KOG1941|consen 75 ELEDSDFLLEAYLNLARSNEKLCEFH----------KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF------ 138 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH------
Confidence 44322 1223344444444444433 66666666666543333 3455677777766544
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc-hhhhhhh
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD-KDQCFEI 233 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 233 (323)
+++++.|++|+++-.++ ...++..||..+.+..|+++|.-+..+|..+..... .+....+
T Consensus 139 --------------q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 139 --------------QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred --------------HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 99999999999983322 125788899999999999999999999987732221 2222233
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC------cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP------LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+..+....+.-. .|..-.|.++++++.++.- -. +....-+|.+|...|+.+.|+..|+.|....
T Consensus 205 r~~~lyhmaValR~-----~G~LgdA~e~C~Ea~klal~~Gdra~~-arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 205 RAMSLYHMAVALRL-----LGRLGDAMECCEEAMKLALQHGDRALQ-ARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHH-----hcccccHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 33333333333222 4566688888888887732 22 3456778999999999999999999998663
No 160
>KOG4340|consensus
Probab=98.66 E-value=1.6e-06 Score=72.52 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..+|..|++++..-.+.+|.+-.+...+|.||+...++. .|.++|++.-.+.|.......+.+...++.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~----------~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA----------LAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 347888999999999999999999999999999999998 8889999999999998888888888777765
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ .+|++...-.... |.-...+...-+.+.+..+++..+....++.-..+..+
T Consensus 93 i~--------------------ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad------ 145 (459)
T KOG4340|consen 93 IY--------------------ADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD------ 145 (459)
T ss_pred cc--------------------HHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc------
Confidence 44 7777665544332 33212445555677778888888888777654322111
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+.+.++. +++ .|+|+.|++-|..|++...-. +-.-++++.++...|++..|.++....++.
T Consensus 146 ~~in~gCl-------lyk---egqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 146 GQINLGCL-------LYK---EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhccchhe-------eec---cccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12222232 222 789999999999999988755 566789999999999999999877666544
No 161
>KOG4234|consensus
Probab=98.64 E-value=3.6e-07 Score=72.04 Aligned_cols=104 Identities=15% Similarity=0.219 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 274 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~ 274 (323)
+-.-|.-+...|+|++|..-|..|+.+.|.-..... .+.+..+ |.+++ ..++++.|+..+.++++++|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r----sIly~Nr--aaa~i---Kl~k~e~aI~dcsKaiel~pty- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER----SILYSNR--AAALI---KLRKWESAIEDCSKAIELNPTY- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH----HHHHhhh--HHHHH---HhhhHHHHHHHHHhhHhcCchh-
Confidence 444566677888999999999999988876543221 1111111 11111 2578999999999999999998
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
..++...|.+|..+.++++|++.|++.++++|..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 7888899999999999999999999999998873
No 162
>KOG2376|consensus
Probab=98.62 E-value=1.7e-06 Score=78.46 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHH
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCF 148 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~ 148 (323)
.+.|++|.....+.+.+.|+...+....-.++...++|+ +| + +.++.++.+. ...+..+.|+|
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~----------~A---L-k~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE----------DA---L-KLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH----------HH---H-HHHHhcchhhhcchhhHHHHHHHH
Confidence 457899999999999999999999998888998888888 44 3 5566666421 12256788888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+.+.. ++|++.++ .+++.. ....-..|.+++++|+|++|++.|+..++-+..+.+.
T Consensus 91 rlnk~--------------------Dealk~~~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 91 RLNKL--------------------DEALKTLK---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HcccH--------------------HHHHHHHh---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 88766 99999999 344443 2456667999999999999999999998876554432
Q ss_pred hh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHH-HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 229 QC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKY-FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 229 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~-~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.. ..+. + ...++.. ..+.+...|+..-..+|+.+-++...|+|.+|++.+++|
T Consensus 147 ~~r~nl~---------a-----------~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 147 ERRANLL---------A-----------VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHH---------H-----------HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11 1110 0 0011111 455566666643577899999999999999999999999
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.62 E-value=1.4e-07 Score=83.96 Aligned_cols=70 Identities=19% Similarity=0.088 Sum_probs=64.7
Q ss_pred ccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHcCC
Q psy11738 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ---NVLMLGKTYMRLEN 207 (323)
Q Consensus 131 ~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~lg~~y~~~g~ 207 (323)
..+|+++.+++++|..++..|++ ++|+..|+++++++|++ .. +|+++|.||..+|+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGry--------------------eEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRV--------------------KDALAQFETALELNPNP-DEAQAAYYNKACCHAYREE 127 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999998755 99999999999999997 54 49999999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy11738 208 YEQAAYYLEMTKNY 221 (323)
Q Consensus 208 ~~~A~~~~~~al~~ 221 (323)
+++|+.++++|+.+
T Consensus 128 ~dEAla~LrrALel 141 (453)
T PLN03098 128 GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999997
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.62 E-value=1.9e-07 Score=62.18 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLE 315 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 315 (323)
.|++++|+..|++++..+|++ ..+++.+|.+|...|++++|...+++++...|++ ....++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999998 7999999999999999999999999999998884 3334443
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.61 E-value=1.6e-05 Score=65.28 Aligned_cols=189 Identities=25% Similarity=0.275 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHH
Q psy11738 74 LILSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~ 149 (323)
.+..+...+..++...+.. .......+..+...+.+. .+...+...+. ..+.....+..+|.+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLE----------EALELLEKALELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHH----------HHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 4566788888888888763 666777788888777777 66667777776 788888899999988887
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHcCCHHHHHHHHHHHhCCCCC--Cc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK-TYMRLENYEQAAYYLEMTKNYPVK--QD 226 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~--~~ 226 (323)
.+.+ ..++..+..++...+.. .......+. ++...|+++.|+..+.+++..+|. ..
T Consensus 108 ~~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (291)
T COG0457 108 LGKY--------------------EEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166 (291)
T ss_pred HhhH--------------------HHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence 7654 99999999999988875 355666666 899999999999999999887663 21
Q ss_pred hhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 227 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.......... ....++++.|+..+.+++...|. . ...+..++.++...++++.|...+.+++...
T Consensus 167 ~~~~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 167 AEALLALGAL-------------LEALGRYEEALELLEKALKLNPDDD-AEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHHHHHhhhH-------------HHHhcCHHHHHHHHHHHHhhCcccc-hHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1111111000 01257899999999999999998 5 6788999999999999999999999999998
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
|.
T Consensus 233 ~~ 234 (291)
T COG0457 233 PD 234 (291)
T ss_pred cc
Confidence 76
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=1.2e-05 Score=80.99 Aligned_cols=195 Identities=15% Similarity=0.057 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhccCCCC---------cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----hH
Q psy11738 74 LILSAYFLVYNALPQHED---------HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----TT 139 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----~~ 139 (323)
++++|...+..+....+. .......+|.++...|++. +|..++.+++...|... .+
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE----------EAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHhcCCCccHHHHHHH
Confidence 456677777666543221 2234445566677777776 78888999988655432 23
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
...+|.++...|++ ++|...+.+++..... ....++..+|.++...|++++|..+
T Consensus 494 ~~~lg~~~~~~G~~--------------------~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 494 TSVLGEVHHCKGEL--------------------ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666544 9999999999876222 1124577889999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC----cchhhhhHHHHHHHHHhcC
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP----LFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p----~~~~~~~~~lg~~y~~~g~ 290 (323)
+++++.+........... ..+....++...+. .|++++|...+.+++.+.+ ......+..+|.++...|+
T Consensus 554 ~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~---~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPM---HEFLLRIRAQLLWE---WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHhccccccH---HHHHHHHHHHHHHH---hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 999987633211000000 00001112222222 5899999999999887632 2224556778999999999
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
+++|...+.++..+
T Consensus 628 ~~~A~~~l~~a~~~ 641 (903)
T PRK04841 628 LDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 167
>KOG3785|consensus
Probab=98.56 E-value=5.1e-06 Score=71.24 Aligned_cols=188 Identities=12% Similarity=0.117 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhccCCCCcH-HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 73 QLILSAYFLVYNALPQHEDHY-AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..|..|+.+++-.+..+.+.. ....|+|.|+..+|+++ +|...|+-+...+.-+.+.+.+|+-+++..|
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~----------~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE----------EALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH----------HHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 345668999988887765544 67799999999999999 8889999999988888899999999988887
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ .+|...-.+ -|+. +..-..|-++-.+.|+-++-.. |...+.-.- ....
T Consensus 106 ~Y--------------------~eA~~~~~k----a~k~-pL~~RLlfhlahklndEk~~~~-fh~~LqD~~----EdqL 155 (557)
T KOG3785|consen 106 QY--------------------IEAKSIAEK----APKT-PLCIRLLFHLAHKLNDEKRILT-FHSSLQDTL----EDQL 155 (557)
T ss_pred HH--------------------HHHHHHHhh----CCCC-hHHHHHHHHHHHHhCcHHHHHH-HHHHHhhhH----HHHH
Confidence 54 777666555 4554 3333334455566676554433 333332111 1112
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+++++.+ . ...|++||+.|++++..+|+. ...-.++|.||.++.=++-+.+.+.--+...|++...
T Consensus 156 SLAsvhY-m------------R~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 156 SLASVHY-M------------RMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred hHHHHHH-H------------HHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 2222211 1 235899999999999999998 6777899999999999999998888878887776654
Q ss_pred HHH
Q psy11738 312 KLL 314 (323)
Q Consensus 312 ~~l 314 (323)
.-|
T Consensus 222 ~NL 224 (557)
T KOG3785|consen 222 KNL 224 (557)
T ss_pred HHH
Confidence 433
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=1.3e-06 Score=78.05 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++++.|+..|++..+.+|+. ...++.++...++..+|+..++++++..|.+...... -+..++
T Consensus 183 ~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~-----------Qa~fLl-- 245 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL-----------QAEFLL-- 245 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH-----------HHHHHH--
Confidence 57899999999999998863 4558999999999999999999999999988433220 111122
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..++++.|+...++++.+.|+. -..|+.|+.+|..+|+++.|+-.++..--..+.
T Consensus 246 -~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~ 300 (395)
T PF09295_consen 246 -SKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCPMLTYK 300 (395)
T ss_pred -hcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCc
Confidence 2688999999999999999998 589999999999999999999888766544433
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.56 E-value=9.1e-08 Score=63.72 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.|++++|+..+++++..+|+++++.+.+|.++...|++. +|...+.+++..+|+++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD----------EAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH----------HHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 468899999999999999999999999999999999999 8999999999999999888877765
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.56 E-value=2.3e-07 Score=80.29 Aligned_cols=214 Identities=17% Similarity=0.133 Sum_probs=122.5
Q ss_pred hhHHHHHHhhhHHHh-hccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFE-EQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
+.+.+++.+|-..|+ .|++++|...+.++ ...++ .+..|.+|...+... ++.++++|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---~~~Aa~~~~~Aa~~~-------k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---KFEAAKAYEEAANCY-------KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHH-------HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH-------HhhCHHHHHHHHHHHH
Confidence 344455555555544 47777777666654 11111 112222222222211 1224566777777777
Q ss_pred cCCCC------cHHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCC
Q psy11738 87 PQHED------HYAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDM 153 (323)
Q Consensus 87 ~~~p~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~ 153 (323)
++.-. -+..+..+|.+|... ++++ +|+++|++|+.+-..+. ..+..+|.++...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e----------~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-- 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYE----------KAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-- 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HH----------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--
Confidence 66322 233455556666555 5555 88999999998743222 23445566665554
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+|++|+..|++.....-++ ....++..+.|+...||+..|...+++....+|.-..
T Consensus 170 ------------------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 170 ------------------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp -------------------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred ------------------CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 5699999999988753221 1134677889999999999999999999999987654
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+-..+ ...+..++ ...+...+++|+..|.+...++|.
T Consensus 232 s~E~~~------~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 232 SREYKF------LEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp SHHHHH------HHHHHHHH-HTT-CCCHHHHCHHHTTSS---HH
T ss_pred cHHHHH------HHHHHHHH-HhCCHHHHHHHHHHHcccCccHHH
Confidence 332222 11122222 234567899999999988888874
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.56 E-value=1.6e-06 Score=64.27 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.+++.+|.++..+|+.+ +|+.+|.+++...+.. ..++..+|..+..+|++
T Consensus 1 ~~~~~~~A~a~d~~G~~~----------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~---------------- 54 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE----------EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY---------------- 54 (120)
T ss_pred CchHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------------
Confidence 357889999999999998 9999999999987665 45788899888887655
Q ss_pred CCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..+++++...|+ + ......++.++...|++++|+..+-.++.
T Consensus 55 ----deA~~~L~~~~~~~p~~~~~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 55 ----DEALALLEEALEEFPDDELN-AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999888 5 46677789999999999999999977764
No 172
>KOG1915|consensus
Probab=98.55 E-value=0.00054 Score=61.28 Aligned_cols=127 Identities=12% Similarity=0.081 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
-.|++-++-+|-++ ++|+.+-..-...|+.+...+.|++|+.--|-........- +++.-+-++++......+.+
T Consensus 309 ~qYE~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R----YIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR----YIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hHHHHHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH----HHHHHHHHHHHHHHHhhhHH
Confidence 35777888899995 99999999999999999999999999987666443333111 11112334455555578899
Q ss_pred HHHHHHHHHHhhCCc----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 258 EALKYFLEAEKQHPL----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 258 ~Al~~~~~a~~~~p~----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.+.+.|+.++++-|. + +.+|.+.|+.-....+...|...+-.|+-.-|.+..
T Consensus 384 rtr~vyq~~l~lIPHkkFtF-aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl 439 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTF-AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL 439 (677)
T ss_pred HHHHHHHHHHhhcCcccchH-HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH
Confidence 999999999999985 3 467888888888999999999999999988777554
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=2.7e-06 Score=63.03 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+++.++.++-..|+.++|+.+|++++........... .+. .++.++. ..|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~-a~i-------~lastlr---~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRR-ALI-------QLASTLR---NLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-HHH-------HHHHHHH---HcCCHHHHHHHHHHHHHHCCC
Confidence 45778888888888888888888888876544432211 111 1222222 267888888888888887776
Q ss_pred ---chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 273 ---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 273 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. ......++.++...|++++|+..+-.++.
T Consensus 71 ~~~~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELN-AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 45667788888899999999888877653
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.52 E-value=3e-07 Score=62.11 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|++|+++++++++++|++ +..++.+|.++..+|++.+|+..++++++.+|++...
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 45699999999999999998 6999999999999999999999999999999977543
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=1.5e-07 Score=64.65 Aligned_cols=71 Identities=25% Similarity=0.412 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+.++.++|.+|..+|++++|+.+|++++.+... .| ..+|
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------------------------~~-------------~~~~ 43 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ----------------------------LG-------------DDHP 43 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----------------------------TT-------------THHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HC-------------CCCH
Confidence 578999999999999999999999998774000 00 0123
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.. +.++.++|.+|..+|++++|+.++++++++
T Consensus 44 ~~-a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 44 DT-ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33 577899999999999999999999999875
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.48 E-value=7.7e-08 Score=66.03 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=55.7
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc----CCCc--hhHHHHHHHHHHHHcCC
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----HPLF--YSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~~lg~~y~~~g~ 207 (323)
|+-..++.++|.++...|++ ++|+.+|++++++ .+++ .+.++.++|.+|..+|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY--------------------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H--------------------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 44466788999999988755 9999999999976 2222 24679999999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy11738 208 YEQAAYYLEMTKNY 221 (323)
Q Consensus 208 ~~~A~~~~~~al~~ 221 (323)
+++|++++++++++
T Consensus 62 ~~~A~~~~~~al~i 75 (78)
T PF13424_consen 62 YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.45 E-value=8.1e-07 Score=59.98 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 180 (323)
.++...+++. +|.+++++++.++|+++..+..+|.+++..|++ .+|+..|
T Consensus 3 ~~~~~~~~~~----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~--------------------~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYE----------EALEVLERALELDPDDPELWLQRARCLFQLGRY--------------------EEALEDL 52 (73)
T ss_pred HHHHhCCCHH----------HHHHHHHHHHHhCcccchhhHHHHHHHHHhccH--------------------HHHHHHH
Confidence 4566666776 899999999999999999999999999998766 9999999
Q ss_pred HHHHhcCCCchhHHHHHHH
Q psy11738 181 LEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 181 ~~al~~~p~~~~~~~~~lg 199 (323)
+++++..|++ +.+....+
T Consensus 53 ~~~l~~~p~~-~~~~~~~a 70 (73)
T PF13371_consen 53 ERALELSPDD-PDARALRA 70 (73)
T ss_pred HHHHHHCCCc-HHHHHHHH
Confidence 9999999997 56554443
No 178
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=1.2e-05 Score=64.49 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..++..|..|..+|-+. -|+-.|.+++.+.|+-+.++..||..+...|++
T Consensus 64 RA~l~fERGvlYDSlGL~~----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f------------------ 115 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRA----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF------------------ 115 (297)
T ss_pred HHHHHHHhcchhhhhhHHH----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc------------------
Confidence 3444555566665555544 677779999999999999999999988887766
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+-|.+.|...+++||++ .-++.+.|..++--|++.-|.+-+.+--.-||+++..
T Consensus 116 --daa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 116 --DAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred --hHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999997 6899999999999999999999999999999999864
No 179
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=7.3e-05 Score=75.47 Aligned_cols=237 Identities=15% Similarity=0.089 Sum_probs=147.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS----EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~----~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
...+..+...|++++|...+..+ ....+ ...+..+|.++...|++ ++|..++++++.+.
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~-------------~~A~~~~~~al~~~ 561 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL-------------QAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHHH
Confidence 34555666778888888777765 11111 23445566777666654 44566555555432
Q ss_pred --------CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-----ChhHHHHHhhHHHHhcCCcHH
Q psy11738 90 --------EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-----DSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 90 --------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-----~~~~~~~lg~~~~~~~~~~~~ 156 (323)
|.....+..+|.++...|++. +|...+.+++.+.+. ...++..+|.++...|++
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~--- 628 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLD----------EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL--- 628 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH---
Confidence 112234456778888888888 777778877765332 233455567776666544
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHH----HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNV----LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+.|...+..+..+.+... .... ......+...|+.+.|..++.......+.... .
T Consensus 629 -----------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~--~ 689 (903)
T PRK04841 629 -----------------DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH--F 689 (903)
T ss_pred -----------------HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch--h
Confidence 999999999877633210 1111 11234556789999999998886653221110 0
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.. .....++..+. ..|++++|+..+.+++..... ....++..+|.++...|+.++|..++.+|+++.
T Consensus 690 -~~----~~~~~~a~~~~---~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 690 -LQ----GQWRNIARAQI---LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred -HH----HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 00 00111222222 267899999999999876322 113568889999999999999999999999985
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
..
T Consensus 762 ~~ 763 (903)
T PRK04841 762 NR 763 (903)
T ss_pred Cc
Confidence 54
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.40 E-value=1.5e-06 Score=77.54 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH---HHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT---LFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
..+|+++.+++++|.+|..+|+++ +|+..|+++++++|++..+ |+++|.+|..+|+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGrye----------EAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVK----------DALAQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 368999999999999999999999 9999999999999999965 99999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQH 187 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~ 187 (323)
++|+.++++|+++.
T Consensus 129 ----------dEAla~LrrALels 142 (453)
T PLN03098 129 ----------KKAADCLRTALRDY 142 (453)
T ss_pred ----------HHHHHHHHHHHHhc
Confidence 99999999999983
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.39 E-value=0.00012 Score=60.55 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=126.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE---DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
+...++..+..+|...+..|++.+|+..++.+ ++|. ...+..-++.+++..++ ++.|+..++
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~-------------y~~A~~~~d 95 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE-------------YDLALAYID 95 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc-------------HHHHHHHHH
Confidence 44557788999999999999999999999987 4444 46677778888877664 567999999
Q ss_pred hhccCCCCcHHHH---HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH-----------------HHHH
Q psy11738 84 NALPQHEDHYAIH---KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT-----------------LFML 143 (323)
Q Consensus 84 ~al~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~-----------------~~~l 143 (323)
+-+.+.|.++++- +..|.++...-+. ..+-.....+|+..|+..+.--|+..-+ -..+
T Consensus 96 rFi~lyP~~~n~dY~~YlkgLs~~~~i~~--~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 96 RFIRLYPTHPNADYAYYLKGLSYFFQIDD--VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HHHHhCCCCCChhHHHHHHHHHHhccCCc--cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988854 3345443322111 1122233447778899999999986432 1223
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
|++|...|. |--|+.-++..++--|+. ..+++..+..+|..+|-.++|...-. .+..
T Consensus 174 aryY~kr~~--------------------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~ 232 (254)
T COG4105 174 ARYYLKRGA--------------------YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGA 232 (254)
T ss_pred HHHHHHhcC--------------------hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHh
Confidence 444444443 488899999999876653 23679999999999999999887654 3444
Q ss_pred C
Q psy11738 222 P 222 (323)
Q Consensus 222 ~ 222 (323)
+
T Consensus 233 N 233 (254)
T COG4105 233 N 233 (254)
T ss_pred c
Confidence 3
No 182
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=8.8e-06 Score=61.48 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+..++.-|...+..|+|++|++.|+......|...-.... ...++++.+. .++|++|+..+++-++++|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qA--------qL~l~yayy~---~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQA--------QLDLAYAYYK---QGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHH--------HHHHHHHHHH---ccCHHHHHHHHHHHHHhCC
Confidence 3445556666666666666666666665555554432221 1123333343 4556666666666666665
Q ss_pred cchh---hhhHHHHHHHHHhcC---------------HHHHHHHHHHhhCCCChhHHH
Q psy11738 272 LFYS---QNVLMLGKTYMRLEN---------------YEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 272 ~~~~---~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 311 (323)
+. + -+++..|.++..... ...|+..|++.+..-|+++-.
T Consensus 79 ~h-p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 79 TH-PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CC-CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 54 2 245666666666655 678999999999988886643
No 183
>KOG4648|consensus
Probab=98.36 E-value=1.1e-06 Score=74.97 Aligned_cols=178 Identities=11% Similarity=-0.053 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
...|.-|...|.++ +|+.||.+++.++|.|+..+.+.+..|+.+..+ ..|
T Consensus 101 KE~GN~yFKQgKy~----------EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F--------------------A~A 150 (536)
T KOG4648|consen 101 KERGNTYFKQGKYE----------EAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF--------------------AQA 150 (536)
T ss_pred HHhhhhhhhccchh----------HHHHHhhhhhccCCCCccchhhHHHHHHHHHHH--------------------HHH
Confidence 33455555555555 555555555555555555555555555554322 555
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh---------
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI--------- 247 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------- 247 (323)
...+..|+.++..+ ..+|...|.+-..+|...+|.+-++.++.+.|++.+.+...-.-.....+.++..-
T Consensus 151 E~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q 229 (536)
T KOG4648|consen 151 EEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQ 229 (536)
T ss_pred HHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCcccc
Confidence 55555555555553 45555555555555555555555555555555543322100000000111111000
Q ss_pred ------------hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 ------------FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ------------~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++....+.++-++.++.+-+..+-++ .....+ ++.|.+..+++.++....+++.++|.
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~-~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS-NQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCcc-ccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 00001234555555555444333332 222233 78888999999999888888777665
No 184
>KOG4234|consensus
Probab=98.33 E-value=6.2e-06 Score=65.23 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=89.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
...+..+-..|+.+|..|+|++|...|..+ .-|.... -..+.+|.+.+-. ..+++.++.|+..+.+++++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa------~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAA------LIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHH------HHHhhhHHHHHHHHHhhHhc
Confidence 344556777899999999999999988876 2333322 1223344443321 23466789999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+|.+..++...+.+|..+..++ +|++-|++.++++|..-.+...+.++
T Consensus 164 ~pty~kAl~RRAeayek~ek~e----------ealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYE----------EALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999988888 89999999999999987766655543
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33 E-value=1.4e-05 Score=66.56 Aligned_cols=97 Identities=27% Similarity=0.275 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 172 SYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
+|.+|...|..-++.-|+.. +.++|.||.+++.+|+++.|...|..+.+-.|++
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------------------ 211 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------------------ 211 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------------------
Confidence 45999999999999888752 3678999999999999999999888887765543
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l 314 (323)
|.- ++.++-||.+...+|+.++|...|.++++.-|...+...-
T Consensus 212 ---------------------~KA-pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 212 ---------------------PKA-PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ---------------------CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 334 5789999999999999999999999999999888765443
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=9.5e-06 Score=61.30 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=88.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYK---EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
++..+...++..|...+..|+|++|+..++.+ +.| -...+.+.++.+|+..++ +++|+..++
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-------------y~~A~a~~~ 71 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-------------YEEAIAAYD 71 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-------------HHHHHHHHH
Confidence 34456678999999999999999999999987 344 346778889999998885 466999999
Q ss_pred hhccCCCCcHH---HHHHHHHHHHHhhc--c---cchHHHHHhHHHHHHHHHHHHccCCCChhH
Q psy11738 84 NALPQHEDHYA---IHKWLAVILNEKAT--L---EGTKARIQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 84 ~al~~~p~~~~---~~~~~~~~~~~~~~--~---~~~~~~~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
+-++++|.++. +++..|.++..... + .+...-......|...|.+.+..-|++.-+
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 99999999887 55666777766653 0 011111223447788899999999987544
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=1.2e-05 Score=67.14 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.|..+.-+...|++. .|...|..-++.-|+. ++++|+||.+++.+|++
T Consensus 144 ~Y~~A~~~~ksgdy~----------~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y------------------- 194 (262)
T COG1729 144 LYNAALDLYKSGDYA----------EAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY------------------- 194 (262)
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-------------------
Confidence 688888888889888 7888899999998874 68899999999999876
Q ss_pred HHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 173 YEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|...|..+.+-.|+.. +++++.||.|..++|+.++|-..|+++++.-|....+
T Consensus 195 -~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 195 -EDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred -hHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999877752 4789999999999999999999999999998887644
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.28 E-value=8.1e-07 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH
Q psy11738 179 YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213 (323)
Q Consensus 179 ~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 213 (323)
+|+++++++|++ +.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 478999999998 7999999999999999999863
No 189
>KOG4642|consensus
Probab=98.25 E-value=8.3e-06 Score=66.23 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|..|+.+|.+++.++|.. +..+.+.+.|+.++.+++.+..-.++|+.++|+...
T Consensus 24 k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred hhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 45699999999999999996 678888999999988888888777777777666543
No 190
>KOG4642|consensus
Probab=98.19 E-value=4.4e-06 Score=67.79 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.|+.+|.+||.++|..+..+-+.+.+|+++.++ +.+....+++++++|+. ..+++.+|.
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~--------------------~~v~~dcrralql~~N~-vk~h~flg~ 86 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHW--------------------EPVEEDCRRALQLDPNL-VKAHYFLGQ 86 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh--------------------hhhhhhHHHHHhcChHH-HHHHHHHHH
Confidence 788899999999999999999999999998777 99999999999999996 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
+......|++|+.++.+|.++...
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhc
Confidence 999999999999999999766433
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.12 E-value=0.00022 Score=59.12 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=108.2
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
+..+|.-|....+.|++ ++|++.|++....+|..+ ..+...++.++++.+++++|+..
T Consensus 34 ~~~LY~~g~~~L~~gn~--------------------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~ 93 (254)
T COG4105 34 ASELYNEGLTELQKGNY--------------------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAY 93 (254)
T ss_pred HHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 34567777666666554 999999999999988852 36799999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHhhCCcchhh--------------
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT----LPTSSYEEALKYFLEAEKQHPLFYSQ-------------- 276 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~Al~~~~~a~~~~p~~~~~-------------- 276 (323)
.++-+.+.|+++..-+. .|.+++.. +++. .+..--.+|+..|+..+...|+. .-
T Consensus 94 ~drFi~lyP~~~n~dY~------~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 94 IDRFIRLYPTHPNADYA------YYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNS-RYAPDAKARIVKLNDA 165 (254)
T ss_pred HHHHHHhCCCCCChhHH------HHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHHHHH
Confidence 99999999999865442 11222221 1111 12233578889999999999963 21
Q ss_pred ---hhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 277 ---NVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 277 ---~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
--...|..|.+.|.+..|+..++..++-.|...
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 124468999999999999999999999877743
No 192
>KOG4555|consensus
Probab=98.07 E-value=8.1e-05 Score=54.87 Aligned_cols=94 Identities=21% Similarity=0.109 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
..|+.+...|+++ .|++.|.+++.+-|..+.+|.+.+..+.-.|+. ++|+
T Consensus 48 l~~valaE~g~Ld----------~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~--------------------e~AL 97 (175)
T KOG4555|consen 48 LKAIALAEAGDLD----------GALELFGQALCLAPERASAYNNRAQALRLQGDD--------------------EEAL 97 (175)
T ss_pred HHHHHHHhccchH----------HHHHHHHHHHHhcccchHhhccHHHHHHHcCCh--------------------HHHH
Confidence 3467777778877 899999999999999999999999998887766 9999
Q ss_pred HHHHHHHhcCCCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 178 KYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 178 ~~~~~al~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..+.+++++..+.. ..++...|.+|+..|+-+.|..-|+.|-.+
T Consensus 98 dDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 98 DDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 99999999965531 256888999999999999999999999776
No 193
>KOG1941|consensus
Probab=98.04 E-value=0.00043 Score=59.88 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=148.3
Q ss_pred hhccHHHHHHHH----HhCCCCC----CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH----
Q psy11738 26 EEQQFEEVNKML----ESSEYKE----DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY---- 93 (323)
Q Consensus 26 ~~~~~~~A~~~~----~~~~~~~----~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---- 93 (323)
.+|.|.+++..- ..+.+-+ -.+++.++++.+..+. .+.+++.+.+..+.+-...+
T Consensus 55 ~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~-------------~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 55 EMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC-------------EFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHhcCCCCCccccc
Confidence 467777765432 2221111 2344555666554444 56778999999888754433
Q ss_pred -HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 94 -AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.++.-+|..+..++.+. ++.+.|++|++...++.+ .+..||.+|-...++
T Consensus 122 gq~~l~~~~Ahlgls~fq----------~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~------------- 178 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQ----------KALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY------------- 178 (518)
T ss_pred chhhhhHHHHhhhHHHHH----------HHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-------------
Confidence 34455666676677777 888899999998765544 477788888777655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLF---------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+-+..+|.++.... ...+++.++..|+.+|+.-.|.++++++.++.-..-+.-....
T Consensus 179 -------~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar---- 247 (518)
T KOG1941|consen 179 -------EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR---- 247 (518)
T ss_pred -------hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH----
Confidence 99999999998873221 1256888999999999999999999999887433221111000
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH-----HHHHHHHhhCCCCh
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ-----AAYYLEMTKNYPAV 307 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~-----A~~~~~~al~~~~~ 307 (323)
...-++..+. ..|+.+.|..-|+.|..+..... ..++...+.+.....-... |++.-++++++...
T Consensus 248 -c~~~~aDIyR---~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 248 -CLLCFADIYR---SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred -HHHHHHHHHH---hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 0011222221 26778888888888887643210 1234444555554444444 77777777777666
Q ss_pred hHHHHH
Q psy11738 308 QEATKL 313 (323)
Q Consensus 308 ~~~~~~ 313 (323)
-.++-.
T Consensus 324 IG~K~~ 329 (518)
T KOG1941|consen 324 IGAKLS 329 (518)
T ss_pred hhhhHH
Confidence 555433
No 194
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=5.3e-06 Score=46.77 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 679999999999999999999999999999863
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=6.7e-06 Score=46.31 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+|+.+|.+|..+|++++|+.+|+++++++|+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999863
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.01 E-value=0.0079 Score=52.85 Aligned_cols=241 Identities=14% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
+..+..-+..|+|++|...|+.+ .+|+--.. .|-..|.. ..+.|..+-|++|.+.+.+..|.-+=+.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll--GLRgLyle----------Aqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLDDPETRLL--GLRGLYLE----------AQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcChHHHHH--hHHHHHHH----------HHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 44666667789999999999987 56554221 22222221 1235567889999999999999877655
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
...-......|++.+ |++..+.... +.|+-. -...+.++-. +..+.+ ..+-
T Consensus 192 ~AtLe~r~~~gdWd~----------AlkLvd~~~~~~vie~~~a--eR~rAvLLtA---------kA~s~l-----dadp 245 (531)
T COG3898 192 RATLEARCAAGDWDG----------ALKLVDAQRAAKVIEKDVA--ERSRAVLLTA---------KAMSLL-----DADP 245 (531)
T ss_pred HHHHHHHHhcCChHH----------HHHHHHHHHHHHhhchhhH--HHHHHHHHHH---------HHHHHh-----cCCh
Confidence 555555666788884 4444333222 222211 1111111100 000000 1123
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
..|...-..++++.|+. ..+-..-+..|.+.|+..++-..++.+.+..|+-.....+.. ...
T Consensus 246 ~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~-----------------ar~ 307 (531)
T COG3898 246 ASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR-----------------ARS 307 (531)
T ss_pred HHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH-----------------hcC
Confidence 77888889999999997 688888999999999999999999999999998643322111 001
Q ss_pred C-cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 254 S-SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 254 ~-~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
| .-..-++-.++...+.|++ ..+.+..+..-+.-|++..|..--+.+....|..-+--+|-
T Consensus 308 gdta~dRlkRa~~L~slk~nn-aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlA 369 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNN-AESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLA 369 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHH
Confidence 1 1112223333444556666 56667777777777777777777777777766655444433
No 197
>KOG4555|consensus
Probab=98.01 E-value=0.00017 Score=53.26 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+.+.|++.|.+++.+-|.. +.+|.+.+..++-+|+.++|++-+++|+++......+.+... ..+.+.+-+
T Consensus 58 ~Ld~AlE~F~qal~l~P~r-aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~-----vQRg~lyRl---- 127 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPER-ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF-----VQRGLLYRL---- 127 (175)
T ss_pred chHHHHHHHHHHHHhcccc-hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH-----HHHHHHHHH----
Confidence 3499999999999999998 799999999999999999999999999998644433322211 122222111
Q ss_pred CCCcHHHHHHHHHHHHhhCCc
Q psy11738 252 PTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.|+-+.|...|..+-.+...
T Consensus 128 -~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 -LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred -hCchHHHHHhHHHHHHhCCH
Confidence 34556666666666655443
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.01 E-value=8.5e-06 Score=45.82 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.99 E-value=7.7e-06 Score=46.00 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
|+++++++|++ +.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999 899999999999999999986
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.99 E-value=0.00053 Score=53.93 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+.+.+-..+.+.+-|++ ...+.||..+.+.|++.+|..+|+++++--=-+.. ....+++.+.+. .
T Consensus 73 ~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----------a~lLglA~Aqfa---~ 137 (251)
T COG4700 73 ERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----------AMLLGLAQAQFA---I 137 (251)
T ss_pred hHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----------HHHHHHHHHHHh---h
Confidence 44444555556666763 66777888888888888888888887764111111 111233444443 4
Q ss_pred CcHHHHHHHHHHHHhhCCcch-hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 254 SSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+++..|...+++..+.+|... ++....+|.+|...|++..|...|+.++...|..++
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 667777777777777776531 245666777777777777777777777777776554
No 201
>KOG2047|consensus
Probab=97.95 E-value=0.002 Score=59.74 Aligned_cols=245 Identities=13% Similarity=0.042 Sum_probs=156.3
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCCHH------------HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKEDVE------------IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~------------~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
...=|+.-+...+++.|+.++..+ .-|.+.. -+++--++++...++ ++..|-++.....|+
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYd 501 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHH
Confidence 344455555667777777777765 3444433 011222222222222 344667788889999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHH-HhcCCcHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCF-EITDMPWYQRKI 160 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~-~~~~~~~~~~~~ 160 (323)
+.+++.--.|....++|..+..-.-++ ++.+.|++.+.+-| .-.+.|...-.-+. +-|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfe----------esFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--------- 562 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFE----------ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--------- 562 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHH----------HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc---------
Confidence 999998889999999998887766666 78888999999875 33444443222111 111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
..+-+.|...|++|++.-|...+ ..++..+..-.+.|--..|++.|++|.+.-+... .+ .+..+
T Consensus 563 ---------g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~---~l---~myni 627 (835)
T KOG2047|consen 563 ---------GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ---RL---DMYNI 627 (835)
T ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH---HH---HHHHH
Confidence 12349999999999998765323 4466667777888999999999999876532211 11 11122
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh-hhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CCh
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-QNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAV 307 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~ 307 (323)
..+-+...+|- ......|++|++.-|+... ..+...+..-..+|..+.|...|.-+-++ +|.
T Consensus 628 ~I~kaae~yGv------~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 628 YIKKAAEIYGV------PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred HHHHHHHHhCC------cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 22223333442 1335677888888776522 23566688888999999999999888888 777
No 202
>KOG2053|consensus
Probab=97.94 E-value=0.0079 Score=57.93 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=129.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
....-.-..+..++|.+|+..+.+. +.|+...+...-|-+..++|. .++|..+++..-...|++.
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-------------~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-------------GDEALKLLEALYGLKGTDD 77 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-------------chhHHHHHhhhccCCCCch
Confidence 3344555566778888888877776 577777766666666666664 3557777777777777777
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.....+-.+|..+++++ ++..+|+++...+|+ .+..+.+=.+|.+.+++...+
T Consensus 78 ~tLq~l~~~y~d~~~~d----------~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ---------------- 130 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLD----------EAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ---------------- 130 (932)
T ss_pred HHHHHHHHHHHHHhhhh----------HHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH----------------
Confidence 77777778888888777 777888888888887 444444444455544331111
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH---------HHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHH
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE---------QAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKI 243 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~---------~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (323)
.-|++.|+ .-|.+.-.-|..++.+.-.+..++ -|...+++.+... +....... ..+ ..+
T Consensus 131 kaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~------~Ly-l~i 199 (932)
T KOG2053|consen 131 KAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI------ILY-LLI 199 (932)
T ss_pred HHHHHHHH----hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH------HHH-HHH
Confidence 33444443 344432122333333333333322 2344555555544 21111111 011 001
Q ss_pred HHHhhccCCCCcHHHHHHHHH-HHHhhCCcchhhhh-HHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 244 ANAIFDTLPTSSYEEALKYFL-EAEKQHPLFYSQNV-LMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 244 a~~~~~~~~~~~~~~Al~~~~-~a~~~~p~~~~~~~-~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+ . ..+++++|+..+. .-.+..+.. .... ..-+..+..++++++-.+...++++-.+++
T Consensus 200 L---~---~~~k~~eal~~l~~~la~~l~~~-~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 200 L---E---LQGKYQEALEFLAITLAEKLTSA-NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred H---H---hcccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1 0 1567999998883 333333332 2222 233455566777777777777777666664
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.6e-05 Score=46.82 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=38.4
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
|.++..+|.++...|++ ++|++.|+++++.+|++ +.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~--------------------~~A~~~~~~~l~~~P~~-~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP--------------------DEAERLLRRALALDPDD-PEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCcCC-HHHHHHhhh
Confidence 46788999999998766 99999999999999998 699998875
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.89 E-value=1.4e-05 Score=44.96 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568999999999999999999999999998863
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.89 E-value=2e-05 Score=47.28 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
|.++..+|..|...|+++ +|++.|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~----------~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPD----------EAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457889999999999999 8999999999999999999999885
No 206
>KOG0376|consensus
Probab=97.87 E-value=1.7e-05 Score=70.80 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
-+.|+.|+..|.+|++++|+++..+...+..+...+++. .|..-+.+||+++|....+|+..|.++...+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~----------~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG----------GALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh----------hHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 456899999999999999999998888888888888777 7888899999999999999999999988876
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
.+ .+|+..|++...+.|+. +.+...+-.|
T Consensus 87 ~~--------------------~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EF--------------------KKALLDLEKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HH--------------------HHHHHHHHHhhhcCcCc-HHHHHHHHHH
Confidence 44 99999999999999997 5777766666
No 207
>KOG0545|consensus
Probab=97.87 E-value=0.00011 Score=60.08 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=78.8
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.+-++|+.+|..|+|.+|...|..+ +.|..++..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~----------------------------------- 223 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWL----------------------------------- 223 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHH-----------------------------------
Confidence 44678999999999999988777653 244443321
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+++..+...+.+++.|+...+++. +.+++....+..+|.|..+++..|..+...=+.
T Consensus 224 --eLdk~~tpLllNy~QC~L~~~e~y----------evleh~seiL~~~~~nvKA~frRakAhaa~Wn~----------- 280 (329)
T KOG0545|consen 224 --ELDKMITPLLLNYCQCLLKKEEYY----------EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------- 280 (329)
T ss_pred --HHHHhhhHHHHhHHHHHhhHHHHH----------HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH-----------
Confidence 111223334567777777777776 788888888999999999998888877655333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.+|...|.++++++|.-
T Consensus 281 ---------~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 281 ---------AEAKADLQKVLELDPSL 297 (329)
T ss_pred ---------HHHHHHHHHHHhcChhh
Confidence 88899999999998874
No 208
>KOG1070|consensus
Probab=97.87 E-value=0.0081 Score=60.52 Aligned_cols=190 Identities=14% Similarity=0.004 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhcc-CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 74 LILSAYFLVYNALP-QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 74 ~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
..++|...+++||. +++.-.+=..++-.+|.++....+..+ .-.+.|++|-+... -...|..|..+|...+
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~e- 1544 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE------SLKKVFERACQYCD-AYTVHLKLLGIYEKSE- 1544 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhh-
Confidence 45667888888774 445444433444444444444433222 33456666666542 2234444555555544
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++++|.+.|+.-++...+. ..+|..+|..+++.++-++|...+++|++.-|... +.-.
T Consensus 1545 -------------------k~~~A~ell~~m~KKF~q~-~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e--Hv~~ 1602 (1710)
T KOG1070|consen 1545 -------------------KNDEADELLRLMLKKFGQT-RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE--HVEF 1602 (1710)
T ss_pred -------------------cchhHHHHHHHHHHHhcch-hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh--hHHH
Confidence 4499999999999987754 68899999999999999999999999999888732 1111
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++. .|-.-|+ .|+-+.+...|.-.+..+|.- .+.|.-....-.+.|+.+-....|++++++
T Consensus 1603 Isk-------fAqLEFk---~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1603 ISK-------FAQLEFK---YGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHH-------HHHHHhh---cCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 111 2222232 467778888999999999987 788988888888899999999999999877
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.87 E-value=0.0011 Score=61.53 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
...+.|.+.+....+..|+. +..++..|.++...|+.++|++.|++++.....-. .+..+++++.......
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~~l~~~El~w~~~~--- 317 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLHHLCYFELAWCHMF--- 317 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHHHHHHHHHHHHHHH---
Confidence 34588999999999999997 68888899999999999999999999985322222 2222333433333333
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH-------HHHHHHHHHhhCCC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-------EQAAYYLEMTKNYP 305 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 305 (323)
..+|++|..+|.+..+.+....+...+..|-|+...|+. ++|.+.+.++-.+.
T Consensus 318 --~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 --QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred --HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 578999999999999988765445567789999999999 88888888876653
No 210
>KOG3081|consensus
Probab=97.85 E-value=0.01 Score=49.50 Aligned_cols=126 Identities=15% Similarity=-0.017 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..+++-|....++...++.+. ....+|..+.....-.+ ....|.-.|+..-..-|-++.....++.++..++
T Consensus 150 ~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge------k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE------KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch------hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 445666777777777776432 33445555444333221 1124444566666656666666666777777665
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH-HHHHHHhCCCCCCc
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKNYPVKQD 226 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~~~~~~ 226 (323)
++ ++|...++.++..++++ ++++.++-.+-...|...++. .++.+....+|.++
T Consensus 222 ~~--------------------eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 222 RY--------------------EEAESLLEEALDKDAKD-PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CH--------------------HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44 77777777777777776 577777777766777665543 34555555566654
No 211
>KOG2053|consensus
Probab=97.83 E-value=0.018 Score=55.64 Aligned_cols=172 Identities=13% Similarity=0.031 Sum_probs=115.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|...-....+|-.+++.|++++|..+++.. ..+++..++--+-.+|..++ .+++|..+|++++..
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-------------~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-------------KLDEAVHLYERANQK 106 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-------------hhhHHHHHHHHHHhh
Confidence 344445577888999999999999888876 35567777777888887776 567899999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH-hhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML-GMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
+|+ -+..+.+-.+|.+.+.+. +-.+.--+..+..|+++...+.. ..+.+......-....+
T Consensus 107 ~P~-eell~~lFmayvR~~~yk----------~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i------- 168 (932)
T KOG2053|consen 107 YPS-EELLYHLFMAYVREKSYK----------KQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPI------- 168 (932)
T ss_pred CCc-HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccch-------
Confidence 998 777788888898888887 22233444556889888765544 44444333221111100
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
--.-|.+.+++.++.. +-....=....-.++..+|++++|.+.+..
T Consensus 169 ----~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 169 ----LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ----hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 0155677777777766 222111123334677888999999998843
No 212
>KOG2610|consensus
Probab=97.79 E-value=0.00073 Score=57.95 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=118.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC-CCCcHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ-HEDHYA 94 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 94 (323)
-..+..++..|++.+|-....++ ..|.+.-++-.--.+++.+|+... ....+++.+-. +|+.|.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~-------------~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIG-------------KKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhh-------------hhhHHHHhccccCCCCcH
Confidence 33455566678888877666665 588887777777788899887765 47778888876 776644
Q ss_pred ---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 95 ---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+-.++..+...|-+. +|.+..+++++++|.+.-+.+.++.++...+.+
T Consensus 174 ~sYv~GmyaFgL~E~g~y~----------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~------------------ 225 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYD----------DAEKQADRALQINRFDCWASHAKAHVLEMNGRH------------------ 225 (491)
T ss_pred HHHHHHHHHhhHHHhccch----------hHHHHHHhhccCCCcchHHHHHHHHHHHhcchh------------------
Confidence 4455677788888887 788889999999999999999999888776554
Q ss_pred CHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 172 SYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
.++.++..+.-..-... ....|-.-+.++..-+.|+.|++.|.+-+
T Consensus 226 --Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 226 --KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred --hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 88888887765432221 12345667888899999999999998754
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0036 Score=49.41 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL-PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
.-.+++|.+...+|+ +.||...|++++ -+..+++.....++......+++. .+...
T Consensus 90 qnr~rLa~al~elGr-------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A----------~a~~t 146 (251)
T COG4700 90 QNRYRLANALAELGR-------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA----------AAQQT 146 (251)
T ss_pred HHHHHHHHHHHHhhh-------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH----------HHHHH
Confidence 345677777777774 455777777776 455666777777777777777777 66777
Q ss_pred HHHHHccCCC--ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 126 MNKAIELKPD--DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 126 ~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
+++..+.+|. .|+.+..+|+.+...|. +.+|...|+-++..-|+ +.+....+..+.
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~--------------------~a~Aesafe~a~~~ypg--~~ar~~Y~e~La 204 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGK--------------------YADAESAFEVAISYYPG--PQARIYYAEMLA 204 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCC--------------------chhHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888888775 66777777877776654 48888888888888887 367777788888
Q ss_pred HcCCHHHHHHHHHHH
Q psy11738 204 RLENYEQAAYYLEMT 218 (323)
Q Consensus 204 ~~g~~~~A~~~~~~a 218 (323)
.+|+.++|..-+...
T Consensus 205 ~qgr~~ea~aq~~~v 219 (251)
T COG4700 205 KQGRLREANAQYVAV 219 (251)
T ss_pred HhcchhHHHHHHHHH
Confidence 888877776655544
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.77 E-value=0.0046 Score=54.87 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhccC----CCCcHHHHHHHHHHHHH---hhcccchHHHHHhHHHHHHHHHH-HHccCCCChhHHHHHhh
Q psy11738 74 LILSAYFLVYNALPQ----HEDHYAIHKWLAVILNE---KATLEGTKARIQQLETIKHHMNK-AIELKPDDSTTLFMLGM 145 (323)
Q Consensus 74 ~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~-al~l~p~~~~~~~~lg~ 145 (323)
.|+.-+...+..-.+ -++.+.+...+|.++.. .|+.+ +|++.+.. .....+.+++.+-.+|+
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre----------~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE----------KALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH----------HHHHHHHHHHhccCCCChHHHHHHHH
Confidence 445567777766655 56678888899999988 44444 88888888 66667789999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~ 210 (323)
+|-..= .... .......++|+.+|.++.+++|+. ..-.|++.++...|...+
T Consensus 226 IyKD~~----~~s~-------~~d~~~ldkAi~~Y~kgFe~~~~~--Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDLF----LESN-------FTDRESLDKAIEWYRKGFEIEPDY--YSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHH----HHcC-------ccchHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHcCCccc
Confidence 986541 1100 001122499999999999999885 445566666666665433
No 215
>KOG2796|consensus
Probab=97.75 E-value=0.00036 Score=57.82 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
+.|.-.+..+.+.++.+|...+.....||.+-++.||.+.|..+++..-+....-....... ...+..+...
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~-----~V~~n~a~i~--- 262 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI-----MVLMNSAFLH--- 262 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH-----HHHhhhhhhe---
Confidence 45688899999999998665456677899999999999999999996653321111110000 0011111112
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
...++|.+|...|.+++..+|.+ +.+-.+.|.|.+.+|+...|++..+.++.+.|..-
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 23678999999999999999998 78889999999999999999999999999988743
No 216
>KOG2047|consensus
Probab=97.74 E-value=0.017 Score=53.90 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=107.8
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-C----CCC-----CHHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHh--
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-E----YKE-----DVEIIWRLVRVKYNLATHSSSL-SDADKKQLILSAYFLVYN-- 84 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~----~~~-----~~~~~~~la~~y~~~~~~~~~~-~~~~~~~~~~~A~~~~~~-- 84 (323)
...|+.|++.|.|+.|-+.|+++ . ..+ +.-+.|.-..+-..++ ..... ..++-...++-.+..++.
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHH
Confidence 45788889999999999999875 1 111 2222233333333344 11000 001111122233333333
Q ss_pred ----------hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc-cCCCCh-----hHHHHHhhHHH
Q psy11738 85 ----------ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE-LKPDDS-----TTLFMLGMWCF 148 (323)
Q Consensus 85 ----------al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~-----~~~~~lg~~~~ 148 (323)
++..+|+|.+-+...-.++ .|+.. +.+..|..|++ .+|.-+ ..|..+|.+|-
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~----------~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAA----------EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhhh--cCChH----------HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 3556777766554443333 33333 44555666654 567543 46888899888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
..|++ +.|...|+++.+..=.. .+.+|..-|..-.+..+++.|+...++|..+...
T Consensus 399 ~~~~l--------------------~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 399 NNGDL--------------------DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred hcCcH--------------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 88777 99999999999974322 2467999999999999999999999999887543
No 217
>KOG1070|consensus
Probab=97.72 E-value=0.0082 Score=60.50 Aligned_cols=207 Identities=13% Similarity=0.072 Sum_probs=142.4
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.|...--++.-....++.++.++|....+++ .++...+-...+-.+|.++-..... .+..+.-|++|.++++
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--EESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--HHHHHHHHHHHHHhcc---
Confidence 3444444555556667789999999988887 2444444455666677777665553 3334444444544432
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
--..|..+..+|...+.+. +|.+.++..++..-+....|..+|..++++.+.
T Consensus 1529 -----~~~V~~~L~~iy~k~ek~~----------~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~------------- 1580 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKND----------EADELLRLMLKKFGQTRKVWIMYADFLLRQNEA------------- 1580 (1710)
T ss_pred -----hHHHHHHHHHHHHHhhcch----------hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH-------------
Confidence 2346778888888888777 888899999998888888999999988887654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+.|...+.+|++--|. + ......-+..-.+.|+.+.+...|+-.+...|.-.+-+...+ +
T Consensus 1581 -------~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi-d--------- 1642 (1710)
T KOG1070|consen 1581 -------EAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI-D--------- 1642 (1710)
T ss_pred -------HHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH-H---------
Confidence 7788888888888777 3 344555677788899999999999999988887654322111 0
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
. ....+.-+.+...|++++.+.-
T Consensus 1643 -~---eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1643 -M---EIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -H---HHccCCHHHHHHHHHHHHhcCC
Confidence 0 1224566677788888887653
No 218
>KOG3617|consensus
Probab=97.69 E-value=0.0023 Score=61.11 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=135.0
Q ss_pred HHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH--HHHHHhhccCCCCcHHHHHHHHH
Q psy11738 24 LFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSA--YFLVYNALPQHEDHYAIHKWLAV 101 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A--~~~~~~al~~~p~~~~~~~~~~~ 101 (323)
++-.|+.+.|+..++-+ ..-.+|-.+|..+....+.+.+ ..+.|+...| ...+.++.+ +|++.++ ..+.
T Consensus 738 yvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVA---kVClGhm~~aRgaRAlR~a~q-~~~e~ea--kvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVA---KVCLGHMKNARGARALRRAQQ-NGEEDEA--KVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHH---HHhhhhhhhhhhHHHHHHHHh-CCcchhh--HHHH
Confidence 34469999998877764 2335677888888777765532 2234443333 223344433 3433333 4455
Q ss_pred HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q psy11738 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 181 (323)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 181 (323)
+-..+|.++ +|...|.+.-+.| .|..+|+..|.+ ++|++.-+
T Consensus 809 LAieLgMlE----------eA~~lYr~ckR~D--------LlNKlyQs~g~w--------------------~eA~eiAE 850 (1416)
T KOG3617|consen 809 LAIELGMLE----------EALILYRQCKRYD--------LLNKLYQSQGMW--------------------SEAFEIAE 850 (1416)
T ss_pred HHHHHhhHH----------HHHHHHHHHHHHH--------HHHHHHHhcccH--------------------HHHHHHHh
Confidence 666677777 7777777766544 556666666544 77776665
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC----------CCCCCchhhhhhhc---chhHHHHHHHHHhh
Q psy11738 182 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN----------YPVKQDKDQCFEIT---DMPWYQRKIANAIF 248 (323)
Q Consensus 182 ~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~----------~~~~~~~~~~~~~~---~~~~~~~~~a~~~~ 248 (323)
.--+++-. ..|++.+..+...++.+.|+++|+++=. -+|...+....... ...|.-.+ +
T Consensus 851 ~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-----l 922 (1416)
T KOG3617|consen 851 TKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-----L 922 (1416)
T ss_pred hccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-----H
Confidence 54444433 4588888889999999999999988621 12222111111110 11121111 1
Q ss_pred ccCCCCcHHHHHHHHHHHHhhC---------------------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQH---------------------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~---------------------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
-+.|..+.|+.+|..|.+-. ..+ ..+.+.||.-|...|+..+|+.+|.+|-.
T Consensus 923 --ES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 923 --ESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --hcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 13577888888888776432 123 34688999999999999999999888743
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.60 E-value=6.5e-05 Score=42.14 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999884
No 220
>KOG0376|consensus
Probab=97.60 E-value=6.2e-05 Score=67.30 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+..|+..|.+||+++|+.+..+-+.+..+...+++ ..|+..+.+|++++|.. ..+|+..
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~--------------------~~Al~Da~kaie~dP~~-~K~Y~rr 78 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF--------------------GGALHDALKAIELDPTY-IKAYVRR 78 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechh--------------------hhHHHHHHhhhhcCchh-hheeeec
Confidence 33899999999999999999888888888777665 99999999999999997 6999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
|.+++.++++.+|+..|+...++.|++...
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 999999999999999999999999998754
No 221
>KOG0530|consensus
Probab=97.58 E-value=0.0062 Score=50.64 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=134.0
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
..|+...+-++.++|.|-.++...-.++..++..- .+-.++++..+.-+|.|...|+..-.+.-..|+.
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL---------~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~-- 128 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDL---------NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP-- 128 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc--
Confidence 45899999999999999999888888887766443 2556889999999999999998877766666554
Q ss_pred HHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYE-EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
. .-++..+..+..+..++ .+|...--|....+.++.-+.+....++.|-.+..+....+-
T Consensus 129 ------------------s~rELef~~~~l~~DaKNY-HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 129 ------------------SFRELEFTKLMLDDDAKNY-HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred ------------------ccchHHHHHHHHhccccch-hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 3 55788889999998885 999999999999999999999999999998877765442111
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH-hc
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LE 289 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~-~g 289 (323)
-+... .+..+....+.-+.+.++.+.+.|++ ..+|..|.-++.. .|
T Consensus 190 vi~~~--------~~~~~~~~le~El~yt~~~I~~vP~N-eSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 190 VITNT--------KGVISKAELERELNYTKDKILLVPNN-ESAWNYLKGLLELDSG 236 (318)
T ss_pred EEEec--------cCCccHHHHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhccC
Confidence 11000 01111234566788899999999998 7889888888774 55
No 222
>KOG0551|consensus
Probab=97.57 E-value=0.00087 Score=57.35 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=86.3
Q ss_pred hcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~ 264 (323)
+-.|+..+..+---|+-|.+..+|..|+.+|.++++..-.+.+... .+|....|..++ .|+|..||..+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna------vLY~NRAAa~~~----l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA------VLYTNRAAAQLY----LGNYRSALNDCS 143 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH------HHHhhHHHHHHH----HHHHHHHHHHHH
Confidence 3455544566777899999999999999999999987544443211 112222222222 478999999999
Q ss_pred HHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 265 ~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+++.++|.+ ..+++.-|.|++.+.++.+|..+++..+.++.+.+
T Consensus 144 ~al~~~P~h-~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 144 AALKLKPTH-LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHhcCcch-hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999998 79999999999999999999999998887765533
No 223
>KOG3617|consensus
Probab=97.57 E-value=0.0076 Score=57.71 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHH----------HHccCCC------
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNK----------AIELKPD------ 135 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------al~l~p~------ 135 (323)
.|++++|++..+.--++.-.+ .|++++..+...++.+ .|+++|+| .+.-+|.
T Consensus 839 ~g~w~eA~eiAE~~DRiHLr~--Tyy~yA~~Lear~Di~----------~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRIHLRN--TYYNYAKYLEARRDIE----------AALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred cccHHHHHHHHhhccceehhh--hHHHHHHHHHhhccHH----------HHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 346667777777655554333 4667777777666655 34444433 2333443
Q ss_pred ----ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---------------------hcCCCc
Q psy11738 136 ----DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE---------------------KQHPLF 190 (323)
Q Consensus 136 ----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------------------~~~p~~ 190 (323)
++..|..-|.+.-..|+. +-|+.+|..|- .-..++
T Consensus 907 ~~~~d~~L~~WWgqYlES~Gem--------------------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEM--------------------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred HhccchHHHHHHHHHHhcccch--------------------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc
Confidence 344455555555555554 33333333322 113344
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
..+-+.||..|...|++.+|+.+|.+|-.
T Consensus 967 -~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 967 -KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 36788899999999999999999887744
No 224
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.0014 Score=52.02 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+-+.++..+...|++++|+..++.++....+..... .....++..++. .+.+++|+..+.... ++.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~--------l~~lRLArvq~q---~~k~D~AL~~L~t~~--~~~ 156 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKA--------LAALRLARVQLQ---QKKADAALKTLDTIK--EES 156 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHH--------HHHHHHHHHHHH---hhhHHHHHHHHhccc--ccc
Confidence 4466788899999999999999999987644432211 122245555554 688999998877544 332
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
..+......|.++..+|+.++|+..|+++++..+.+-..+++.
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 2234467789999999999999999999999976666666543
No 225
>KOG2796|consensus
Probab=97.53 E-value=0.0033 Score=52.32 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHH----HccCC--CChhHHHHHhhH
Q psy11738 74 LILSAYFLVYNALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA----IELKP--DDSTTLFMLGMW 146 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a----l~l~p--~~~~~~~~lg~~ 146 (323)
.|.-++..+.+.++.+ |..+.....+|.+-...|+.+ .|..+|++. -+++. .+.....+.+.+
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k----------~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK----------TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH----------HHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 4555788899999888 667777777888888888887 455556533 23332 223334444444
Q ss_pred HHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 147 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|.-.+ +|.+|...|.+.++.||.+ +.+-.+-+.|....|+...|++..+.++...|...
T Consensus 262 ~lg~n--------------------n~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 262 HLGQN--------------------NFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred eeccc--------------------chHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 44443 4599999999999999998 68899999999999999999999999999999875
Q ss_pred hh
Q psy11738 227 KD 228 (323)
Q Consensus 227 ~~ 228 (323)
..
T Consensus 321 l~ 322 (366)
T KOG2796|consen 321 LH 322 (366)
T ss_pred hh
Confidence 43
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.52 E-value=8.4e-05 Score=41.67 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46899999999999999999999999999874
No 227
>KOG0551|consensus
Probab=97.51 E-value=0.0011 Score=56.76 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=72.3
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKE-DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
+.+++.++++-++|+.+|..++|..|+..|.+. .+|+ ++..|...|-|-..+| +|+.|+..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-------------NyRs~l~D 141 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-------------NYRSALND 141 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-------------HHHHHHHH
Confidence 445567788889999999999999999999875 2443 3444455555555544 67889999
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
+.+++.++|.+..+++.=+.|+..+.++.
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999877
No 228
>KOG1586|consensus
Probab=97.50 E-value=0.0082 Score=49.11 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCC---c--hhHHHHHHHHHHHHc-CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 174 EEALKYFLEAEKQHPL---F--YSQNVLMLGKTYMRL-ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~---~--~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.++.+++++-.+ + .+..+..+|.+|... .++++|+.+|+.|-......... ..++-+.. +.| .
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---ssANKC~l--KvA--~ 162 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---SSANKCLL--KVA--Q 162 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---hhHHHHHH--HHH--H
Confidence 8999999999998433 1 123466789999766 99999999999997653333221 11111111 100 0
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchh------hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYS------QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+. .-.++|.+|+..|++...-.-+++. ..++.-|.|++-..|.-.+...+++-.+++|.
T Consensus 163 ya-a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YA-AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 10 0146899999999987766544311 23566789999999999998899998999887
No 229
>KOG2471|consensus
Probab=97.49 E-value=0.0056 Score=55.21 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=86.6
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCC---C-----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKE---D-----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~---~-----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+..+.++.+....+..|+|.+|..++... ..+. . .-++..+|-+.+.+| .+.-+.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~-------------~y~~~~ 303 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG-------------CYQASS 303 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh-------------hHHHHH
Confidence 356678899999999999999999988875 3333 1 122345555555555 344456
Q ss_pred HHHHhhcc---------CCC---------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHH
Q psy11738 80 FLVYNALP---------QHE---------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLF 141 (323)
Q Consensus 80 ~~~~~al~---------~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~ 141 (323)
.+|.+|++ +.| +.-+..|++|..|...|++. .|.++|.++...--.+|..|.
T Consensus 304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl----------~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL----------LAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH----------HHHHHHHHHHHHHhcCcHHHH
Confidence 66666653 111 24567899999999999999 899999999999999999999
Q ss_pred HHhhHHHHh
Q psy11738 142 MLGMWCFEI 150 (323)
Q Consensus 142 ~lg~~~~~~ 150 (323)
.|+.+|...
T Consensus 374 RlAEcCima 382 (696)
T KOG2471|consen 374 RLAECCIMA 382 (696)
T ss_pred HHHHHHHHH
Confidence 999998743
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.013 Score=45.12 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH--------------HHHHHHhhccCCCCcHHHHHHHH
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ--------------RKIANAIFDTLPTSSYEEALKYF 263 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~Al~~~ 263 (323)
.|......|+.+.++..+++++.+-..+..... ....|.. ..++.... ..|++++|+..+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~---~~~~W~~~~r~~l~~~~~~~~~~l~~~~~---~~~~~~~a~~~~ 85 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDL---DDEEWVEPERERLRELYLDALERLAEALL---EAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGG---TTSTTHHHHHHHHHHHHHHHHHHHHHHHH---HTT-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCHHHHHHHH
Confidence 355556778888888888888888544321110 0001111 11222222 268999999999
Q ss_pred HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh-------hCCCChhHHHHHHHH
Q psy11738 264 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-------KNYPAVQEATKLLEK 316 (323)
Q Consensus 264 ~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~l~~ 316 (323)
.+++..+|-+ ...+..+-.+|...|+..+|+..|.+. +.+.|..+...+..+
T Consensus 86 ~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 86 QRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 9999999998 799999999999999999999888776 555677776665544
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.42 E-value=0.0026 Score=57.50 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC---------------
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--------------- 187 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------- 187 (323)
++...+|++++|+.+.++..|+.=... ...+|.++|+++++..
T Consensus 188 IkaA~eALei~pdCAdAYILLAEEeA~----------------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLAEEEAS----------------------TIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhccccccc----------------------CHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 467889999999999999998852111 1144444444444320
Q ss_pred --------CCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 188 --------PLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 188 --------p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
+.+ ...+...||.|..++|+.++|++.++..++..|.. ...... .+..+++. .+.|.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire----------nLie~LLe---lq~Ya 312 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE----------NLIEALLE---LQAYA 312 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH----------HHHHHHHh---cCCHH
Confidence 000 12456779999999999999999999999987753 222111 12222222 56677
Q ss_pred HHHHHHHHHHhhC-CcchhhhhHHHHHHHHH-hcC---------------HHHHHHHHHHhhCCCCh
Q psy11738 258 EALKYFLEAEKQH-PLFYSQNVLMLGKTYMR-LEN---------------YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 258 ~Al~~~~~a~~~~-p~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~~al~~~~~ 307 (323)
++...+.+=-++. |.. +..++.-+..-.+ .++ -..|++.+.+|.+.+||
T Consensus 313 d~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 7766666532221 333 4444444332211 222 13478899999999998
No 232
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.40 E-value=0.0027 Score=45.72 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=74.8
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA 94 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 94 (323)
+|..++..|++-+|+.+++.. .++++ +-.+..-|.++..++....+ ++.+...+.-|++.+.+++.+.|..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten--~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTEN--PDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccC--chHHHHHHHHhHHHHHHHhccChhHHH
Confidence 577889999999999999986 33333 36677788888888776554 677888899999999999999999876
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL 132 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 132 (323)
..+.+|.-++...-|. ++....++++.+
T Consensus 80 ~L~~la~~l~s~~~Yk----------k~v~kak~~Lsv 107 (111)
T PF04781_consen 80 SLFELASQLGSVKYYK----------KAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhhhHHHHH----------HHHHHHHHHhcc
Confidence 6666665544333333 555566666654
No 233
>KOG2610|consensus
Probab=97.35 E-value=0.0064 Score=52.36 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|-|++|.+.-+++++++|.+ ..+.-..++++...|+++++.++..+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44566666666666666665 455555666666666666666665543
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.0027 Score=58.94 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC----ChhHHHHHhhHHHH
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD----DSTTLFMLGMWCFE 149 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~----~~~~~~~lg~~~~~ 149 (323)
..+.|...+.......|+.+-..+..|.++...|+.+ +|++.|++++..... +...++.+|.++..
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~----------~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE----------EAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH----------HHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 4577899999999999999988899999999999998 888999988854433 33457778888877
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH-------HHHHHHHHHHhCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-------EQAAYYLEMTKNYP 222 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 222 (323)
+.+| ++|..+|.+..+.+.-..+...+..|-|+...|+. ++|.+++.++-.+-
T Consensus 318 ~~~w--------------------~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 QHDW--------------------EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HchH--------------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7655 99999999999975543334466679999999999 88999998886653
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0046 Score=52.39 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh-cchhHHHHHHHHHh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-TDMPWYQRKIANAI 247 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~a~~~ 247 (323)
+.+++.+|...|..++...|++ ..+...|+.||...|+.+.|...+...-.-.... . ...+ ..+....
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~--~~~l~a~i~ll~------- 214 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-A--AHGLQAQIELLE------- 214 (304)
T ss_pred hccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-H--HHHHHHHHHHHH-------
Confidence 4466799999999999999998 7999999999999999999999887643221111 1 0000 0000000
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.-....+ +..+.+.+..+|++ ...-+.+|..|...|+.++|.+.+-..+..+-.
T Consensus 215 -qaa~~~~----~~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 215 -QAAATPE----IQDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred -HHhcCCC----HHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 0000111 34556667779988 788999999999999999999998777766433
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.017 Score=49.11 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=101.6
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..+..+.++..++..|++.+|...+..+ ..|++.++...++++|...|+.. .|...+. ..|
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e-------------~A~~iL~----~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE-------------AAQAILA----ALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH-------------HHHHHHH----hCc
Confidence 4455678888899999999999999887 58888999999999999988643 2444443 333
Q ss_pred CcHHHHHHHH-----HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 91 DHYAIHKWLA-----VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 91 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+...-.+.+ ..+........ ...+.+.+..+|+|..+.+.++..+...|+.
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~-----------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~------------ 252 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPE-----------IQDLQRRLAADPDDVEAALALADQLHLVGRN------------ 252 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH------------
Confidence 3332222222 11111121111 1347788899999999999999988887655
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+.|+.++-..++.+-++. ..+...+-.++...|.-+.+...++
T Consensus 253 --------e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 253 --------EAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred --------HHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999988888754421 2445555555555554333333333
No 237
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.32 E-value=0.0069 Score=49.91 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
.++++|+..|.-|+-. +|...+..++.++.+|+.+|+.+....++++|+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~------------------------ 146 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE------------------------ 146 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH------------------------
Confidence 3568888888777643 2222245678889999999997766666655543
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC-----cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP-----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKS 319 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~ 319 (323)
.|.+++.... -+.....+.+|..+.+.|++++|..+|.+++.....+.-..++..|..
T Consensus 147 -----------------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 147 -----------------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred -----------------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 3444443321 111356889999999999999999999999988666554455555543
No 238
>KOG0545|consensus
Probab=97.31 E-value=0.0023 Score=52.65 Aligned_cols=112 Identities=14% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhC--------CCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKN--------YPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~ 264 (323)
.++-.-|+-+++.|+|++|...|+.|+. --|.+++.....-.....+. ..+-+ ....++|-++++++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLll-Ny~QC---~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLL-NYCQC---LLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHH-hHHHH---HhhHHHHHHHHHHHH
Confidence 5566778888999999999999988863 24554443221110010000 00111 123678999999999
Q ss_pred HHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 265 ~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.++..+|++ ..++|..|.++...=+.++|...|.++|+++|.-.
T Consensus 255 eiL~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 255 EILRHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHhcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 999999999 89999999999999999999999999999999843
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.30 E-value=0.0052 Score=53.09 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.+..+.|...|++|.+..+.+..+|...|.+-...++-. ..|...|+++++.-|.+...|......+...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~---------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP---------KRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H---------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 3445788999999999777777888887777755544333 1588999999999999999999888888887
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++. +.|...|++++..-|... ...|......-.+.|+.+...+..+++....|.+.
T Consensus 84 ~d~--------------------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 84 NDI--------------------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp T-H--------------------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred CcH--------------------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 765 999999999999866642 24677778888899999999999999998887754
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.30 E-value=0.0091 Score=54.15 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC--------------
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-------------- 136 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-------------- 136 (323)
+..+.+.-+....+|++++|+.++++..++.-- ...+. ++.++|+++++.....
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe-----A~Ti~-------Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE-----ASTIV-------EAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc-----ccCHH-------HHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 445567779999999999999999876655311 11111 3444455554432211
Q ss_pred -----------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHH
Q psy11738 137 -----------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMR 204 (323)
Q Consensus 137 -----------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~ 204 (323)
.-+...+|.+.... |+.++|++.|+..++..|. +...++.+|..++..
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarkl--------------------Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKL--------------------GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHh--------------------CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 11222333333333 4559999999999998876 234689999999999
Q ss_pred cCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHH--h---------hccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 205 LENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANA--I---------FDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~--~---------~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
++.|.++...+.+--++. |++... +|...+..+ + ........-..|++...+|++.+|.
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti---------~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATI---------CYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHH---------HHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 999999999988743221 222211 121111100 0 0000011124578999999999998
Q ss_pred chhhhhHHH------HHHHHHhcCHHHHHHHHHHhh
Q psy11738 273 FYSQNVLML------GKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 273 ~~~~~~~~l------g~~y~~~g~~~~A~~~~~~al 302 (323)
. +..+..+ =.-+.+.|| .||+.|---.+
T Consensus 379 V-p~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL 412 (539)
T PF04184_consen 379 V-PKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHL 412 (539)
T ss_pred C-chhhhccCCCCCChHHhcCCCc-HHHHHHHHHHH
Confidence 7 4422211 112344554 66666544433
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.27 E-value=0.057 Score=46.60 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=83.2
Q ss_pred HhhccHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHH-HHHHHHHHHHhhccC-------CCCcH
Q psy11738 25 FEEQQFEEVNKMLESSE---YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQ-LILSAYFLVYNALPQ-------HEDHY 93 (323)
Q Consensus 25 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~-------~p~~~ 93 (323)
..+|+++-|..++.++. ...+++....+++++++.|...-. .+ .++.|..++++|+++ ++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~------~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS------KKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 46799999999999983 256778888999999999964322 22 444555555555444 23333
Q ss_pred HH-------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 94 AI-------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 94 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
+. +..++.++...+..+ ...++......+-...|+.+..+...=.++...++.+.+.+.+-..+..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~-------~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYE-------SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChH-------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33 233444444444443 2224555666666677887777644444444444443333333333333
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCC
Q psy11738 167 TL-PTSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 167 ~~-~~~~~~~A~~~~~~al~~~p 188 (323)
.. +...++.++.++....+.+|
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~~~ 173 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEKSP 173 (278)
T ss_pred cccccchHHHHHHHHHHHHhhCc
Confidence 22 33344455555555444444
No 242
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.012 Score=50.95 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...|+..|.+|.+-.+-+...|...|.+-+..++ +.+.|.+.|+.+++..|.+ ...|...
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-------------------d~~~A~~Ife~glk~f~~~-~~~~~~Y 76 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-------------------DPKRARKIFERGLKKFPSD-PDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--------------------HHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence 3488999999997777788899888888666442 2256999999999999997 6888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
...+...|+.+.|...|++++..-|....... ++.+...--. .-|+.+.......++.+..|+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~--------iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKK--------IWKKFIEFES---KYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH--------HHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH--------HHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999987554431100 0111000000 1367778888888888887764
No 243
>KOG1550|consensus
Probab=97.26 E-value=0.037 Score=52.66 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=70.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC---CHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE---NYEQAA 212 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g---~~~~A~ 212 (323)
++.+.+.+|.+|........ -++..|+.+|.++-+... +.+.+.+|.+|..-. ++..|.
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~---------------~d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~~g~~~~d~~~A~ 348 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEK---------------IDYEKALKLYTKAAELGN---PDAQYLLGVLYETGTKERDYRRAF 348 (552)
T ss_pred CCccccHHHHHHhcCCCCcc---------------ccHHHHHHHHHHHHhcCC---chHHHHHHHHHHcCCccccHHHHH
Confidence 45566677766665432200 034667777777766533 245666777766554 456777
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-cC
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-EN 290 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g~ 290 (323)
++|..|.... +..+. + .++.++. |....-+...|..+++++.+..+ +.+...++..+... ++
T Consensus 349 ~yy~~Aa~~G--~~~A~-~----------~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~---~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 349 EYYSLAAKAG--HILAI-Y----------RLALCYELGLGVERNLELAFAYYKKAAEKGN---PSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHHHHHHHcC--ChHHH-H----------HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC---hhhHHHHHHHHHHcccc
Confidence 7777775531 11110 0 1111111 22234567788888888887773 34455666555533 66
Q ss_pred HHHHHHHHHH
Q psy11738 291 YEQAAYYLEM 300 (323)
Q Consensus 291 ~~~A~~~~~~ 300 (323)
++.+.-.+..
T Consensus 413 ~~~~~~~~~~ 422 (552)
T KOG1550|consen 413 YDTALALYLY 422 (552)
T ss_pred ccHHHHHHHH
Confidence 6665544433
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.26 E-value=0.12 Score=46.11 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc----CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL----KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l----~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
....+-..|....+++ ..++..+..-.+ -++.+...+.+|-++.+.+. .
T Consensus 143 iv~~lllSyRdiqdyd----------amI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~-----------------~ 195 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYD----------AMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK-----------------P 195 (374)
T ss_pred HHHHHHHHhhhhhhHH----------HHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc-----------------C
Confidence 3344444455555554 444555544444 34566666666766555222 2
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc---------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL---------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
|+.++|+..+..++....+..++.+..+|.+|..+ ...++|+.+|+++..++|+......+.. ..
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At-----LL- 269 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT-----LL- 269 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHH-----HH-
Confidence 66799999999966554443378899999987532 2377999999999999977654322111 00
Q ss_pred HHHHHhhccCCCCcHHHHHHHH---H-----H-HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYF---L-----E-AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~---~-----~-a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.+... ..-.+..... . + ..+-.+++ ..+-.++.+..-.|+++.|..++++++.+.|.
T Consensus 270 ----~~~g~~~-~~~~el~~i~~~l~~llg~kg~~~~~~dY--Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 270 ----MLAGHDF-ETSEELRKIGVKLSSLLGRKGSLEKMQDY--WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ----HHcCCcc-cchHHHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 0001100 0111111111 0 1 11112222 34567788888999999999999999999655
No 245
>KOG1308|consensus
Probab=97.25 E-value=0.00024 Score=60.90 Aligned_cols=87 Identities=17% Similarity=0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
|.+++|+..+-.+++++|..+..|.+.+.++..+.... .+++-+..|++++|+....+-..|+.+..+|+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~----------~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN----------AAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCc----------hhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 45778999999999999999999999999999998888 78888999999999998888888888888877
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+ ++|..++..+++++-+
T Consensus 198 ~--------------------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 W--------------------EEAAHDLALACKLDYD 214 (377)
T ss_pred h--------------------HHHHHHHHHHHhcccc
Confidence 6 8888888888887655
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.19 E-value=0.00021 Score=40.66 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
++..||.+|..+|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999876643
No 247
>KOG1586|consensus
Probab=97.14 E-value=0.072 Score=43.78 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLFYS-----QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~-----~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
+++.||.+|+.+-+.-.+.-. ..++.-+..-...++|.+|+..|++...-.-++....+ +-...+.+ +
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy---s~Kdyflk----A 201 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY---SAKDYFLK----A 201 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh---HHHHHHHH----H
Confidence 458899999988776333211 34555677778999999999999998765444432211 11111111 1
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+-.....+.-.+-..+++-.+++|.+
T Consensus 202 gLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 202 GLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 111111334445555556666788876
No 248
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.13 E-value=0.063 Score=47.36 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.+|.+++.|..+...--.+-...... ........+.-+..+++|++.+|++...+..+-.+....-...
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~-~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~---------- 82 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSS-KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE---------- 82 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccc-hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH----------
Confidence 69999999998887655443322210 2334556778899999999999988876655444444333222
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-------C----C
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-------H----P 188 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~----p 188 (323)
+..+.+++++..+|+++..|..+-.+.+.. +.+ .+......|.+++.. . +
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f------------------~v~~~~~~y~~~l~~L~~~~~~~~~~~~ 144 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASF------------------TVSDVRDVYEKCLRALSRRRSGRMTSHP 144 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccC------------------cHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 566789999999999999887766544432 221 224444444444432 1 0
Q ss_pred C------chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 189 L------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 189 ~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
. ....++..+.......|-.+.|+..++..++++
T Consensus 145 ~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 145 DLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0 012456667788899999999999999999874
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.11 E-value=0.00099 Score=37.86 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997654
No 250
>KOG1585|consensus
Probab=97.11 E-value=0.03 Score=46.22 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=92.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc----
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---- 92 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 92 (323)
.+-+..+...++|++|-..+.++ +--.+...+|--|.+|-..+-... ....+.++..++++|..+.-++
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak------e~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK------ELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 33344444568888888877776 222223446666666655553322 1445667777777776654221
Q ss_pred -HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh---HHHH---HhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 93 -YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST---TLFM---LGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~---~~~~---lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+..-.-.+--...--+++ +|++.|++++.+-..+.. +.-. .++++.+.
T Consensus 109 tAAmaleKAak~lenv~Pd----------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl--------------- 163 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPD----------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL--------------- 163 (308)
T ss_pred hHHHHHHHHHHHhhcCCHH----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh---------------
Confidence 111111111111112222 567777777766443322 2222 23333333
Q ss_pred cCCCCCCHHHHHHHHHHHHh----cCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 166 DTLPTSSYEEALKYFLEAEK----QHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~----~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
.+|.+|-..|.+-.. .+.-+. ...+...-.+|....+|..|..+++...+++......
T Consensus 164 -----~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 164 -----EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred -----HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 245888777777433 232220 1234444455666779999999999988876655443
No 251
>KOG1308|consensus
Probab=97.10 E-value=0.00033 Score=60.12 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
|.++.|+.+|..+++++|.. +..+-..+.++++++++..|+.-|..|+.++|+.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 33466666666666666654 4555555555555555555555555555555544
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.09 E-value=0.00058 Score=37.75 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++++.+|.+|...|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999988863
No 253
>KOG1550|consensus
Probab=97.05 E-value=0.045 Score=52.06 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=100.5
Q ss_pred hccHHHHHHHHHhC-C------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS-E------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 27 ~~~~~~A~~~~~~~-~------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
..+.+.|+..++.+ . ...++.+...+|.+|..-..... . +...|+.++.++.+.. ++++.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~-------~-d~~~A~~~~~~aA~~g--~~~a~~~l 331 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK-------I-DYEKALKLYTKAAELG--NPDAQYLL 331 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-------c-cHHHHHHHHHHHHhcC--CchHHHHH
Confidence 35777777777665 2 12345566778888876543322 1 5678999999999885 67788889
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
|.++.... .. .+...|.++|..|.. -.+..+.+.+|.+|..-... ..+...|..+
T Consensus 332 g~~~~~g~-~~------~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv----------------~r~~~~A~~~ 386 (552)
T KOG1550|consen 332 GVLYETGT-KE------RDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGV----------------ERNLELAFAY 386 (552)
T ss_pred HHHHHcCC-cc------ccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCc----------------CCCHHHHHHH
Confidence 98887655 11 222378888888874 46888999999876543111 1234999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHc-CCHHHHHHHHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRL-ENYEQAAYYLEM 217 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~ 217 (323)
|+++-+.++ +.+.+.++.++... ++++.+.-.+..
T Consensus 387 ~k~aA~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 387 YKKAAEKGN---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred HHHHHHccC---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 999999872 35555566555433 666655544433
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.21 Score=44.25 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC---CCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP---VKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
|.++-|..+-.++.+.-|.- +++....-...+..||++.|++..+...... +...+.....+ ..-+.. .+
T Consensus 168 GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL-----LtAkA~-s~ 240 (531)
T COG3898 168 GAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVL-----LTAKAM-SL 240 (531)
T ss_pred ccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHH-----HHHHHH-HH
Confidence 56699999999999999996 6888888888899999999999998765432 22111111111 111111 11
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
. ..+-..|...-..+.++.|++ ...-..-+..+...|+.-++-..++.+-+..||.+.
T Consensus 241 l----dadp~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 241 L----DADPASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred h----cCChHHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 1 345678899999999999998 677788899999999999999999999999999554
No 255
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.03 E-value=0.19 Score=43.64 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=107.3
Q ss_pred HhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 25 FEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILN 104 (323)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 104 (323)
...+.+..|+..+..+....++...+.++..|..-..... +..+|+.++..+.+ ..++.+.+.+|.+|.
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~---------~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~ 120 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSR---------DKTKAADWYRCAAA--DGLAEALFNLGLMYA 120 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccc---------cHHHHHHHHHHHhh--cccHHHHHhHHHHHh
Confidence 4568889999988887444555788888888876554433 46789999996555 457888889998887
Q ss_pred HhhcccchHHHHHhHHHHHHHHHHHHccCCCC-hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy11738 105 EKATLEGTKARIQQLETIKHHMNKAIELKPDD-STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183 (323)
Q Consensus 105 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 183 (323)
.-.-.. .+..+|..+|.+|.+..-.. ..+.+.+|.++..-. . .... ..+...|+..|.++
T Consensus 121 ~G~gv~------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~---~~~~---------~~~~~~A~~~~~~a 181 (292)
T COG0790 121 NGRGVP------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q---ALAV---------AYDDKKALYLYRKA 181 (292)
T ss_pred cCCCcc------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h---hhcc---------cHHHHhHHHHHHHH
Confidence 632111 14458999999999875444 345888887765531 0 0000 01225788888888
Q ss_pred HhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 184 EKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 184 l~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
-... + +.+.+.+|.+|.. ..++.+|+.+|.+|...
T Consensus 182 a~~~--~-~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 182 AELG--N-PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHhc--C-HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 8765 2 4677788876643 22455555555555444
No 256
>KOG1585|consensus
Probab=96.98 E-value=0.055 Score=44.75 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH------HHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT------LFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~------~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+...+.++....+++ +|+.++.+|.+-..+|... +...|.+...+.
T Consensus 33 ~yekAAvafRnAk~fe----------KakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~----------------- 85 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFE----------KAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS----------------- 85 (308)
T ss_pred HHHHHHHHHHhhccHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-----------------
Confidence 3444456666667777 7777788887655444332 222232222222
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHH--HHHcCCHHHHHHHHHHHhCCCCCCchhhh-hhhcchhHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKT--YMRLENYEQAAYYLEMTKNYPVKQDKDQC-FEITDMPWYQ 240 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~--y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~ 240 (323)
.+.++..+|++|..+ .|+ ++-..|+.. ..+.-++++|+..|++++.+-..+..... +.+ .
T Consensus 86 ---klsEvvdl~eKAs~lY~E~Gspd---tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------~ 153 (308)
T KOG1585|consen 86 ---KLSEVVDLYEKASELYVECGSPD---TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------Y 153 (308)
T ss_pred ---HhHHHHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------H
Confidence 349999999999887 343 333444433 56677899999999999988666554433 111 1
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.+..+ ....+|++|-..+.+-... .|+. -..+...-.+|+...||..|..+++....++.-
T Consensus 154 gk~sr~l---Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~-~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 154 GKCSRVL---VRLEKFTEAATAFLKEGVAADKCDAYNSQ-CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HHhhhHh---hhhHHhhHHHHHHHHhhhHHHHHhhcccH-HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 1111111 1245788887777664433 2222 234555556677788999999999997777654
No 257
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.92 E-value=0.11 Score=45.18 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=111.2
Q ss_pred hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-HHHHHHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH-YAIHKWLAVILNE 105 (323)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~ 105 (323)
..+..+|+..+...-...++...+.+|..|..-.-.. .+..+|..++++|.+..-.. ..+.+.+|.++..
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~---------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~ 160 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVP---------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS 160 (292)
T ss_pred cccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcc---------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Confidence 3568899999997767788899999999887633121 15688999999999985322 2337778877776
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 185 (323)
-....+. ......|...|.++.... ++.+.+.+|.+|..-.-. ..++.+|+.+|.++-+
T Consensus 161 g~~~~~~---~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv----------------~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 161 GLQALAV---AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV----------------PRDLKKAFRWYKKAAE 219 (292)
T ss_pred Chhhhcc---cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC----------------CcCHHHHHHHHHHHHH
Confidence 4311111 112236778888888776 888999999766442110 1356999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhCC
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLE---------------NYEQAAYYLEMTKNY 221 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g---------------~~~~A~~~~~~al~~ 221 (323)
... ..+.+.++ ++...| +...|..++..+...
T Consensus 220 ~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 220 QGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 876 37788888 777666 666666666666554
No 258
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.91 E-value=0.0021 Score=34.59 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+++.+|.++..+|++++|+.+++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998775
No 259
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.80 E-value=0.094 Score=46.98 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred hhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC-----------------
Q psy11738 26 EEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ----------------- 88 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------- 88 (323)
.+++.+.-+.++. ..|-+++++..++.++...|+...+ .+.++.|+-.+++++--
T Consensus 22 ~~~Dp~~l~~ll~--~~PyHidtLlqls~v~~~~gd~~~A------~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 22 QSHDPNALINLLQ--KNPYHIDTLLQLSEVYRQQGDHAQA------NDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HccCHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 3456666555654 4799999999999999999986554 66777787777755321
Q ss_pred --CCCcHHHHHH---HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhh-HHHHhcCCcHHHHHHH
Q psy11738 89 --HEDHYAIHKW---LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGM-WCFEITDMPWYQRKIA 161 (323)
Q Consensus 89 --~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~-~~~~~~~~~~~~~~~~ 161 (323)
.|.|-..+.. ....+...|.+. .|.+.++-.+.+||. ||......-. ...+.+++.|+.+...
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~r----------TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWR----------TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 1223332222 233344444444 899999999999999 8876544443 3355556666555443
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH---------------HHHHHHHHHHhCCCCCC
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY---------------EQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~---------------~~A~~~~~~al~~~~~~ 225 (323)
+.. ...+...+..-|+. -+.++.++...++. +.|...+.+|+...|.-
T Consensus 164 ~~~------------~~~~~~~~~~lPn~----a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 164 SPL------------AKCYRNWLSLLPNF----AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hHh------------hhhhhhhhhhCccH----HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 210 00122223334543 56678888888888 89999999999886653
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.80 E-value=0.0012 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+++.+|.+|...|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999999999988776
No 261
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.70 E-value=0.21 Score=44.83 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC-CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh---
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK-QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--- 268 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--- 268 (323)
.+.+.....+.+.|-+..|.++++-.+++||. |+-...+.+.-.+ + ..++|+=-+..+.....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A---------L----rs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA---------L----RSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH---------H----hcCCHHHHHHHHHhHhhhhh
Confidence 45666677889999999999999999999999 5433221111110 0 13445444444443222
Q ss_pred -----hCCcchhhhhHHHHHHHHHhcCH---------------HHHHHHHHHhhCCCCh
Q psy11738 269 -----QHPLFYSQNVLMLGKTYMRLENY---------------EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 269 -----~~p~~~~~~~~~lg~~y~~~g~~---------------~~A~~~~~~al~~~~~ 307 (323)
.-|+ ..+..+.++..+++. +.|...+.+|+..-|.
T Consensus 171 ~~~~~~lPn----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 171 RNWLSLLPN----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhCcc----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 2343 357788888888888 8899999999888775
No 262
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.62 E-value=0.0058 Score=37.97 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
+.++.+|..+.++|+|++|..+.+.+|++.|++.-...|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3468899999999999999999999999988765543333
No 263
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.59 E-value=0.0039 Score=33.42 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..++.+|.+|..+|+++.|+.+|++++++.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45789999999999999999999999998774
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.067 Score=41.12 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.|++++|+..+++++.++|.+ ..++..+-.+|...|+..+|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999998 68999999999999999999999998754
No 265
>KOG3824|consensus
Probab=96.50 E-value=0.0041 Score=52.84 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+.|..++|...|+-|+.++|.+++++..+|.+...-.+.. +|-.+|-+|+.++|.|.++..+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv----------~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV----------EADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH----------hhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4567899999999999999999999988888777666555 88899999999999999998887653
No 266
>KOG2471|consensus
Probab=96.48 E-value=0.015 Score=52.59 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=102.0
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh-ccCCCC---
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA-LPQHED--- 91 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~--- 91 (323)
.-++..++...+..-+....+.+ ...+.+.+++.-+..++..|++. +|...+... +...|.
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~-------------kA~KlL~~sni~~~~g~~~ 276 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP-------------KAMKLLLVSNIHKEAGGTI 276 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH-------------HHHHHHHhcccccccCccc
Confidence 33556666777777777766665 34477788888899999888654 355544332 222232
Q ss_pred ---c--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---------cCC---------CChhHHHHHhhHHH
Q psy11738 92 ---H--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---------LKP---------DDSTTLFMLGMWCF 148 (323)
Q Consensus 92 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---------l~p---------~~~~~~~~lg~~~~ 148 (323)
- .-++.++|.+.+.++.+. -+.-+|.+|+. +.| ...+..|+.|..+.
T Consensus 277 T~q~~~cif~NNlGcIh~~~~~y~----------~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 277 TPQLSSCIFNNNLGCIHYQLGCYQ----------ASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred cchhhhheeecCcceEeeehhhHH----------HHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH
Confidence 1 123467788888888776 56677888885 222 24567889999888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
..|.. -.|.++|.++......+ +..|+.|+.|++...
T Consensus 347 h~grP--------------------l~AfqCf~~av~vfh~n-PrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 347 HSGRP--------------------LLAFQCFQKAVHVFHRN-PRLWLRLAECCIMAL 383 (696)
T ss_pred hcCCc--------------------HHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHh
Confidence 88776 99999999999998887 689999999987543
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.48 E-value=0.1 Score=46.45 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=101.8
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYK------EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+.....+.-+......|+++-|...+.++... ..+.+.+..++.....|+. .+|+..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~-------------~~Ai~~L~ 208 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ-------------EEAIQKLR 208 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH-------------HHHHHHHH
Confidence 4455666788888899999999999988887321 2567777788888888754 23444444
Q ss_pred hhccCCC-------------------------C--cHHHHHHHHHHHHHhhcccchH---HHHHhHHHHHHHHHHHHccC
Q psy11738 84 NALPQHE-------------------------D--HYAIHKWLAVILNEKATLEGTK---ARIQQLETIKHHMNKAIELK 133 (323)
Q Consensus 84 ~al~~~p-------------------------~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~al~l~ 133 (323)
..++..+ . ........+.++..+|++.... .......++...|.++++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 209 ELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred HHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 4444100 0 1112233456666666655322 01244557889999999999
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHH-H-----HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQ-R-----KIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
|+...+|+.+|..+...-...... . ..... -..|+.+|-+++...|..
T Consensus 289 ~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 289 PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEY---------LEQAIEGYLKALSLGSKY 342 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHH---------HHHHHHHHHHHHhhCCCc
Confidence 999999999998876653221100 0 00000 167899999999998874
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.43 E-value=0.61 Score=41.43 Aligned_cols=153 Identities=17% Similarity=0.046 Sum_probs=98.2
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~ 209 (323)
.......+..++.+....|.+ +-|...+.++...++.. .+.+.+..+..+-..|+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~--------------------~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~ 201 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNF--------------------QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQE 201 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCc--------------------HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHH
Confidence 444455566666666666544 99999999988865221 2466777889999999999
Q ss_pred HHHHHHHHHhCC-CCCCch-----h-----------------hhhhhcchhHHHHHHHHHhhccC----CCCcHHHHHHH
Q psy11738 210 QAAYYLEMTKNY-PVKQDK-----D-----------------QCFEITDMPWYQRKIANAIFDTL----PTSSYEEALKY 262 (323)
Q Consensus 210 ~A~~~~~~al~~-~~~~~~-----~-----------------~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~Al~~ 262 (323)
+|+..++..+.. ...... . ........+-....++.-. ... ..+..++++..
T Consensus 202 ~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~-~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 202 EAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL-DELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH-HhhccccccccHHHHHHH
Confidence 999999988872 111100 0 0000000000000111100 112 45789999999
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCH-----------------HHHHHHHHHhhCCCCh
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENY-----------------EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-----------------~~A~~~~~~al~~~~~ 307 (323)
|..++.++|+. ...++.+|..+...-+. ..|+.+|-+++...+.
T Consensus 281 ~~~a~~~~~~~-~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSW-EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhH-HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999987 68899999887654222 3488899999988777
No 269
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.33 E-value=0.24 Score=43.70 Aligned_cols=121 Identities=12% Similarity=-0.046 Sum_probs=80.7
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccc--hHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEG--TKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~ 157 (323)
.-+++.++-+|.+.+++..+............ ........+.-+..+++|++.+|++...+..+=......-+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~---- 81 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS---- 81 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----
Confidence 45778899999999998888776665544332 122233344556789999999999888776655554444332
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHH--cCCHHHHHHHHHHHhCC
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT-YMR--LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~-y~~--~g~~~~A~~~~~~al~~ 221 (323)
++..+-+++++..+|++ ...|...-.. ... .-.++.....|.+++..
T Consensus 82 ----------------~~l~~~we~~l~~~~~~-~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 82 ----------------EKLAKKWEELLFKNPGS-PELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred ----------------HHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 77788899999999997 4555443322 222 33466777777777653
No 270
>KOG3364|consensus
Probab=96.08 E-value=0.065 Score=40.03 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
.....++++++.....+- .+.++.+..++..++ -+|...-...++|+..++++++|+.++.+
T Consensus 31 s~~s~f~lAwaLV~S~~~-----------------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~y 93 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT-----------------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRY 93 (149)
T ss_pred hHHHHHHHHHHHHcccch-----------------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHH
Confidence 345566777666544332 123788999999996 66665457788999999999999999999
Q ss_pred HHHHhCCCCCCchhh
Q psy11738 215 LEMTKNYPVKQDKDQ 229 (323)
Q Consensus 215 ~~~al~~~~~~~~~~ 229 (323)
++..++..|++....
T Consensus 94 vd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 94 VDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHhhCCCcHHHH
Confidence 999999999987653
No 271
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.07 E-value=0.11 Score=42.75 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=54.8
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..+..++++|-..++.......+ ..|+..|.++++.... +.....+.+|.++++.|++++|+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl-------------~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~ 185 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFL-------------RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAK 185 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHH-------------HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 34566677776666643333333 8899999999986433 22367888999999999999999
Q ss_pred HHHHHHhCCCCC
Q psy11738 213 YYLEMTKNYPVK 224 (323)
Q Consensus 213 ~~~~~al~~~~~ 224 (323)
.+|.+++.....
T Consensus 186 ~~fs~vi~~~~~ 197 (214)
T PF09986_consen 186 RWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHcCCCC
Confidence 999999886433
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.03 E-value=0.01 Score=36.90 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+.++.++..+.++|+|++|..+.+.+++++|++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 457889999999999999999999999999998754
No 273
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.03 E-value=0.073 Score=37.28 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTY 202 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y 202 (323)
..+++.++.+|+|..+.+.++..+...|++ ++|+..+..+++.++++. ..+.-.+-.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~--------------------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDY--------------------EEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-H--------------------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 457777888888888888888877776654 888888888888776641 24455555666
Q ss_pred HHcCCHHHHHHHHHH
Q psy11738 203 MRLENYEQAAYYLEM 217 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~ 217 (323)
..+|.-+.-...|++
T Consensus 69 ~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 69 ELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHH-TT-HHHHHHHH
T ss_pred HHcCCCChHHHHHHH
Confidence 666665444444443
No 274
>KOG4507|consensus
Probab=95.93 E-value=0.054 Score=50.23 Aligned_cols=96 Identities=17% Similarity=0.047 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhccCCCCcHH-HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYA-IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
.|+-..|+.++..|+...|.... ...+++.++...+... .|-..+.+++.+.-..|..++.+|+.+..+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~----------da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL----------DATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc----------cHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 44556799999999999998665 3577888888877555 677889999999999999999999999988
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
.+. +.|+++|+.|+.++|++ +..-..|
T Consensus 690 ~~i--------------------~~a~~~~~~a~~~~~~~-~~~~~~l 716 (886)
T KOG4507|consen 690 KNI--------------------SGALEAFRQALKLTTKC-PECENSL 716 (886)
T ss_pred hhh--------------------HHHHHHHHHHHhcCCCC-hhhHHHH
Confidence 877 99999999999999998 4554333
No 275
>KOG3364|consensus
Probab=95.87 E-value=0.057 Score=40.33 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHh-hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
-++.+..++.+..+.+..+...++ -+|...-...++|+..+.++|+|+.++.+....++..|++.-
T Consensus 40 waLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 40 WALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334555567788999999999996 677664567899999999999999999999999999776443
No 276
>KOG4507|consensus
Probab=95.86 E-value=0.033 Score=51.54 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHH
Q psy11738 117 QQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195 (323)
Q Consensus 117 ~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 195 (323)
++-..|+.++.+|+-+.|.... ...+|+.+...-+-. .+|-..+..++.+.... +..+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~--------------------~da~~~l~q~l~~~~se-pl~~ 679 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH--------------------LDATKLLLQALAINSSE-PLTF 679 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh--------------------ccHHHHHHHHHhhcccC-chHH
Confidence 3444788999999999997655 467788776655433 78999999999998765 6889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.+|.+|.-+.+.+.|++.++.|++++|+...
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999999999999864
No 277
>KOG3824|consensus
Probab=95.82 E-value=0.028 Score=47.99 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++|...|+.|++++|.++.+...+|.+.-...++ -+|-.+|-+|+.++|.+ ..++.+..
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i--------------------v~ADq~Y~~ALtisP~n-seALvnR~ 191 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEI--------------------VEADQCYVKALTISPGN-SEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh--------------------HhhhhhhheeeeeCCCc-hHHHhhhh
Confidence 3899999999999999999999999876555544 78999999999999998 67777665
Q ss_pred HH
Q psy11738 200 KT 201 (323)
Q Consensus 200 ~~ 201 (323)
..
T Consensus 192 RT 193 (472)
T KOG3824|consen 192 RT 193 (472)
T ss_pred cc
Confidence 43
No 278
>KOG0529|consensus
Probab=95.80 E-value=0.79 Score=40.96 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=115.5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+++..-.+.++.+|+...+|...-.++...-. -.....+.....+-+.+...+++.+|+...+|+.+..+....+..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 346777778888888888887665544443322 111122223444566788999999999999999999887766532
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC----CHHHHHHHHHHHhCCCCCCchhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE----NYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g----~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
++..-++...++++.||.++ .+|-..=.++.+.. ...+=+++..+++.-++.+..+
T Consensus 126 ------------------~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa- 185 (421)
T KOG0529|consen 126 ------------------DWNTELQLCEKALKQDPRNF-HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA- 185 (421)
T ss_pred ------------------hHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH-
Confidence 34778899999999999985 55544444433333 3567788889988877776554
Q ss_pred hhhhcchhHHHHHH-HHHhhccCCCC------cHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 230 CFEITDMPWYQRKI-ANAIFDTLPTS------SYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 230 ~~~~~~~~~~~~~~-a~~~~~~~~~~------~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
|.++.+ ...+++....| ....-++.-..|+-.+|++ ...|++
T Consensus 186 --------WhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~D-qS~WfY 234 (421)
T KOG0529|consen 186 --------WHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPED-QSCWFY 234 (421)
T ss_pred --------HHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccc-cceeee
Confidence 333321 22223322233 3456678888899999998 566665
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.77 E-value=0.065 Score=42.83 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC--chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ--DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++..+|..|.+.|+.++|+++|.++....... ..+.++.+..++.+ .+++.....+..++..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-------------~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-------------FGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999987653221 11111222222111 467888888877777653
Q ss_pred Cc--c---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 271 PL--F---YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 271 p~--~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.. + ....-..-|..++..++|.+|...|-.+.-
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22 1 112345668889999999999999966543
No 280
>KOG1310|consensus
Probab=95.76 E-value=0.065 Score=49.08 Aligned_cols=106 Identities=14% Similarity=-0.039 Sum_probs=87.1
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
++.++-++++++.-+..+....|+..+.++ ..|.....+...+.++...+=.. ..-.|+..+-.|+++
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~----------d~~~AlrDch~Alrl 440 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRG----------DSYLALRDCHVALRL 440 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccc----------cHHHHHHhHHhhccC
Confidence 556677888888888889999999999887 58888888888888887654221 235589999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
+|....+|++++.++..++++. +|+++..-+.-..|.+
T Consensus 441 n~s~~kah~~la~aL~el~r~~----------eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYL----------EALSCHWALQMSFPTD 478 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHH----------HhhhhHHHHhhcCchh
Confidence 9999999999999999999988 7777777777777754
No 281
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.76 E-value=0.3 Score=35.31 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCC-cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 121 TIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDM-PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
+|.+..+..+..++++. ..+..-|.+++.++.. ....-+..- .-.++.+|.++..+.|.. +..++
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~y----------Ll~sve~~s~a~~Lsp~~-A~~L~ 82 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRY----------LLGSVECFSRAVELSPDS-AHSLF 82 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHH----------HHHhHHHHHHHhccChhH-HHHHH
Confidence 89999999999999887 5667778888766521 100111111 167899999999999996 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
.+|.-+--..-|++++.-.++++++.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99988777778889999888888763
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.69 E-value=0.59 Score=40.35 Aligned_cols=147 Identities=16% Similarity=0.068 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhc----CCCch---hHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCC----CCCchhhhhhhcchhH
Q psy11738 171 SSYEEALKYFLEAEKQ----HPLFY---SQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYP----VKQDKDQCFEITDMPW 238 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~----~p~~~---~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~ 238 (323)
|+++.|..++.|+-.+ +|+.. +..+++.|......+ +++.|+.++++|.++- +.........- -...
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-lr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-LRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-HHHH
Confidence 5668999999987765 34431 256888899999999 9999999999998882 22211111000 0112
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC--hhHHHHHHHH
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA--VQEATKLLEK 316 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~~~~~~~l~~ 316 (323)
..+.++.+++.......+++|......+..-.|+. +..++.-=.+..+.++.+++.+.+.+.+.-.+ +.....++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~-~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK-PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 33456677776555567778888888887777875 44443333334447889999999998887644 3333444444
Q ss_pred HHh
Q psy11738 317 AKS 319 (323)
Q Consensus 317 ~~~ 319 (323)
+..
T Consensus 165 i~~ 167 (278)
T PF08631_consen 165 IKQ 167 (278)
T ss_pred HHH
Confidence 433
No 283
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.68 E-value=0.028 Score=45.92 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
.++++.|.+.|..++++-|+. ...|+.+|..-.+.|+++.|...|++.++++|.+...
T Consensus 8 ~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 356799999999999999997 7899999999999999999999999999999998544
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.53 E-value=0.12 Score=36.09 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+..+++.+..+|++ ..+.+.+|..+...|++++|++.+-.++..++.
T Consensus 7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 466788899999999 799999999999999999999999999999766
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.49 E-value=0.67 Score=33.97 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLF-----------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
+.|++|...+.++.+..-+- .+.++-.|+..+..+|+|++++..-++++
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL-------------------- 82 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL-------------------- 82 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------------------
Confidence 45699999999988763221 12456778888999999998887665553
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+|.+==+++.+. ++.+.+..|.++..+|+.++|+..|+++-+.
T Consensus 83 ---------------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 83 ---------------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ---------------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ---------------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3333333334332 2345677899999999999999999987654
No 286
>KOG1914|consensus
Probab=95.40 E-value=1.6 Score=40.51 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=121.0
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHHhhcccch----HHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHHHHhcCCcH
Q psy11738 81 LVYNALPQHEDHYAIHKWLAVILNEKATLEGT----KARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 81 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~ 155 (323)
.+++++.--+..+++|+-.+..+...++.... ........++...+++++..--. +...++.++. ++-+..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~--~eE~~~-- 342 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD--YEESRY-- 342 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHhc--
Confidence 34555555566777777666555555442111 11112234677888888865432 2223333332 111111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
+. ..++.--..+.+++.+...++..++..+-..-.+..-.+.|...|.+|-+..-...
T Consensus 343 ----------~~---n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h--------- 400 (656)
T KOG1914|consen 343 ----------DD---NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH--------- 400 (656)
T ss_pred ----------cc---chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc---------
Confidence 00 02466677788877764443335566666777777778888888888865422111
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHH
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATK 312 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~ 312 (323)
+-.++.++.....+++...|...|+-.+...++. +..-......+.++++-..|...|++++.- -|-+++.+
T Consensus 401 ----hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~-p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 401 ----HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS-PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 1113333333344789999999999999999987 665566677788999999999999999977 33344433
No 287
>PRK10941 hypothetical protein; Provisional
Probab=95.23 E-value=0.094 Score=44.80 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKS 319 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~ 319 (323)
.++++.|+.+....+.+.|++ +.-+-..|.+|..+|.+..|...++..++.-|++...++++.--+
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 194 EKQMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 689999999999999999998 677888999999999999999999999999998888877765443
No 288
>KOG2396|consensus
Probab=95.20 E-value=0.17 Score=46.18 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
.-...|..|+...+.++..|..........+.+. +....|.+++..+|++++.|..-+.+.+..+..
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~----------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n--- 155 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG----------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN--- 155 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---
Confidence 4466778888888877777766655555555454 555679999999999999999999998887742
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 194 (323)
.+.|...|.++|+.+|+. +..
T Consensus 156 ----------------i~saRalflrgLR~npds-p~L 176 (568)
T KOG2396|consen 156 ----------------IESARALFLRGLRFNPDS-PKL 176 (568)
T ss_pred ----------------hHHHHHHHHHHhhcCCCC-hHH
Confidence 289999999999999997 443
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.20 E-value=0.046 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.++.+||.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 367889999999999999999999999875
No 290
>KOG0985|consensus
Probab=94.99 E-value=4.5 Score=40.69 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
...|-.|+..+..+|+|+.|+..-++|-..
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 355778899999999999999888887544
No 291
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.96 E-value=0.6 Score=34.20 Aligned_cols=110 Identities=16% Similarity=0.054 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC------------cHHHHHHHHHHHHHhhcccchHHHHH
Q psy11738 50 WRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED------------HYAIHKWLAVILNEKATLEGTKARIQ 117 (323)
Q Consensus 50 ~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (323)
...+.+|..+++-.. .-.-+.|++|-..+.+|++.... ++-+|.+++..+..+|+++ +.+.
T Consensus 4 keVa~aY~aLs~ae~----ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~---e~L~ 76 (144)
T PF12968_consen 4 KEVAMAYMALSDAER----QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYD---ECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHH----HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HH---HHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHH---HHHH
Confidence 345666666664321 12245688888888888766422 3446788889999999998 4555
Q ss_pred hHHHHHHHHHHHHccCCCChhHHH----HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 118 QLETIKHHMNKAIELKPDDSTTLF----MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l~p~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
....|..+|.+==+++.+....|. ..+..+... |+.++|++.|+.+-++
T Consensus 77 sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~--------------------Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 77 SADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGL--------------------GRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHH
Confidence 666888899998899887665543 334443333 5669999999998875
No 292
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.93 E-value=0.092 Score=31.15 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhc
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~ 322 (323)
.+.||.+|..+|+.+.|.+.+++.+.-.+ .+...+|+++|.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~----~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD----EAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 36799999999999999999999985432 223445555543
No 293
>KOG3616|consensus
Probab=94.92 E-value=0.4 Score=45.98 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=26.1
Q ss_pred CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 270 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 270 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+|+...+.+..+|.-|...|+.+.|.++|-+|-+.
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 45543456778888999999999998888776544
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.91 E-value=0.029 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..++.+||.+|...|++++|..++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356889999999999999999999999865
No 295
>KOG2300|consensus
Probab=94.70 E-value=1.6 Score=39.95 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCc------HHHHH--------HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---cC
Q psy11738 71 KKQLILSAYFLVYNALPQHEDH------YAIHK--------WLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---LK 133 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---l~ 133 (323)
..|.++++..+-++++..-.+. ..+.. +...|-...|++..+ +.+.....+.+.+.-. +.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~a---l~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEA---LEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHhCCchHHHH
Confidence 3567777777777776543221 11111 122222334555422 2222233344443322 11
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHcCCHHHH
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~y~~~g~~~~A 211 (323)
-..+..++.+|..+...+.+ ++|..+|..|.++-..... ..-.+++.+|.+.|+.+.-
T Consensus 364 ~~~~~ih~LlGlys~sv~~~--------------------enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~ 423 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCY--------------------ENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL 423 (629)
T ss_pred HhHHHHHHHHhhHhhhcchH--------------------HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 12456788888877777655 9999999999987443212 3456789999999987665
Q ss_pred HHHHHHHhCCCCCCchhhh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHH
Q psy11738 212 AYYLEMTKNYPVKQDKDQC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTY 285 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y 285 (323)
-+.++. +.|.+..... ..+.....+ +..++. ...+++.||-..+.+.++..... .+-.+..||.+.
T Consensus 424 y~~ld~---i~p~nt~s~ssq~l~a~~~~----v~glfa-f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ 495 (629)
T KOG2300|consen 424 YKALDL---IGPLNTNSLSSQRLEASILY----VYGLFA-FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVF 495 (629)
T ss_pred HHHHHh---cCCCCCCcchHHHHHHHHHH----HHHHHH-HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 555554 3444321111 111010011 111121 12688999999999998876321 012356788999
Q ss_pred HHhcCHHHHHHHHHHhhC
Q psy11738 286 MRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~ 303 (323)
.-.|+..++..-..-++.
T Consensus 496 lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 496 LSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHhcchHHHHhccchHHH
Confidence 999999988765444433
No 296
>KOG3616|consensus
Probab=94.57 E-value=3.4 Score=40.00 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred CHHHHHHHHHH------HHhc----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 172 SYEEALKYFLE------AEKQ----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 172 ~~~~A~~~~~~------al~~----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++++|+++|++ ++++ .|......-...|.-+..+|+++.|+.+|-.|
T Consensus 676 d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 676 DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 34777777765 4444 35432222344688889999999999988655
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.38 E-value=0.65 Score=36.08 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
++...+.-.--+.|..++....-|.++...|++ .+|+..|+.+.+-.|.. +.+--.++.
T Consensus 28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w--------------------~dA~rlLr~l~~~~~~~-p~~kALlA~ 86 (160)
T PF09613_consen 28 DAEALLDALRVLRPEFPELDLFDGWLHIVRGDW--------------------DDALRLLRELEERAPGF-PYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHhccCCCC-hHHHHHHHH
Confidence 555667777778999999999999999998876 99999999999988887 688888999
Q ss_pred HHHHcCCHH
Q psy11738 201 TYMRLENYE 209 (323)
Q Consensus 201 ~y~~~g~~~ 209 (323)
|+..+|+++
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999999976
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.37 E-value=0.091 Score=43.07 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.++.+.|.+.|.+++.+-|+. ...|+.+|....+.|+.+.|...|++.++++|.+..
T Consensus 8 ~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 578899999999999999987 899999999999999999999999999999888543
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.25 E-value=0.15 Score=35.95 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHHHhhCCcc--------hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLF--------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSY 320 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~--------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 320 (323)
.++|.+|++.+.+.++..... ...+...+|.++...|++++|+..+++|+.+.........|..+-..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 688999988888877664322 12456789999999999999999999999997776666666555433
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.18 E-value=0.4 Score=38.30 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=72.7
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.++..+|..|.+.|+. ++|++.|.++.... |+.....++.+-.+....|++..+..++
T Consensus 37 ~~~~~l~~~~~~~Gd~--------------------~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 37 MALEDLADHYCKIGDL--------------------EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHHhhhH--------------------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4677899999998877 99999999988863 4433466788888999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++-.+.....+... ...+.++ .++. ....++|.+|-..|..+....
T Consensus 97 ~ka~~~~~~~~d~~~--~nrlk~~-~gL~-----~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 97 EKAESLIEKGGDWER--RNRLKVY-EGLA-----NLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhccchHHH--HHHHHHH-HHHH-----HHHhchHHHHHHHHHccCcCC
Confidence 999877544322111 0011111 1111 122678999999998776544
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=1.1 Score=35.90 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 120 ETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
.+|...++.++....+. +.+-..|+++....+.+ ++|++.+...- ++++.+...-
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~--------------------D~AL~~L~t~~--~~~w~~~~~e 163 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA--------------------DAALKTLDTIK--EESWAAIVAE 163 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH--------------------HHHHHHHhccc--cccHHHHHHH
Confidence 37777888887554332 33566778887776544 88887776543 3333234456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
..|.++...|+-++|+..|++++..++..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 68999999999999999999999986443
No 302
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.07 E-value=0.23 Score=42.61 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHH
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEK 316 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~ 316 (323)
|..+|.+|..+.|+. +..+..||.++...|+.=.|+.+|-+++-. .|...+.+-|..
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~ 58 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQK 58 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 678999999999999 799999999999999999999999999977 777666554443
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=2.6 Score=33.29 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 174 EEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
++|+..|...-+..-+.+ ..+.+..+-+....|+...|+..|..+-...|--...+-.... +-+..+ .+
T Consensus 75 d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl-------raa~lL---vD 144 (221)
T COG4649 75 DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL-------RAAYLL---VD 144 (221)
T ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH-------HHHHHH---hc
Confidence 889999988877655543 3568888999999999999999999987654432211110000 111122 34
Q ss_pred CCcHHHHHHHHHHHH-hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 253 TSSYEEALKYFLEAE-KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~-~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.|.|+.-..-.+... +.+| ....+.-.||.+-++.|++..|..+|.+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 778877665554332 2233 2245677899999999999999999998765
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.85 E-value=3.3 Score=37.72 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
|+|.++.-+-.=..++.|. +.++..+|.|++...+|++|-.++..
T Consensus 476 gey~kc~~ys~WL~~iaPS--~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAPS--PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5679888888888899995 59999999999999999999999975
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.94 Score=42.35 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=87.4
Q ss_pred HHHHHHhhccCCCCcHHHHHHH--HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 78 AYFLVYNALPQHEDHYAIHKWL--AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++..+...+.++|.+++.+... ...+..++... .+.-.+..++..+|++..+..+||......+..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~-- 117 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADST----------LAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ-- 117 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccch----------hHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH--
Confidence 5666666677889888875443 44444455443 455678899999999999999999887665433
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH------HHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM------LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.-+...-..+....|++ ...... +|.....+|+..++...+++++.+.|.+..
T Consensus 118 -----------------~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 118 -----------------FLALADISEIAEWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred -----------------HHHHHHHHHHHHhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 233444444488888887 454444 488899999999999999999999988743
No 306
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.78 E-value=1.5 Score=44.24 Aligned_cols=119 Identities=8% Similarity=0.010 Sum_probs=92.5
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+...+.+...+.|+.|+..|+++ .+|+. -++.+++|-+......-... ...+.+|+.-|++... .|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~ 550 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGD------PRDFTQALSEFSYLHG-GVG 550 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCC------hHHHHHHHHHHHHhcC-CCC
Confidence 456677888899999999999998 46554 67889999888776654443 3578999999999654 355
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
-|--|.-.|.+|..++++. +-++++.-|++--|++|..-...-.+.+++.+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYN----------EEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred CchHHHhHHHHHHHhhhHH----------HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 6666777788888888888 77889999999999999987776666666543
No 307
>KOG2300|consensus
Probab=93.75 E-value=1.9 Score=39.60 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=100.0
Q ss_pred hccHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cHHHHHH
Q psy11738 27 EQQFEEVNKMLESS-----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HYAIHKW 98 (323)
Q Consensus 27 ~~~~~~A~~~~~~~-----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 98 (323)
.|++.+|+..+..+ +.|...=+..--+.+.+-+|.+.-+ .+-++.|...|..|+++-.+ .+-+..+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s------v~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS------VNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh------cchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 68999998777654 4555322222333444444444333 33556677777776655322 2334466
Q ss_pred HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 99 LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+|+.|...++.+ .+++-.=.+.|.|.. .....|.+++-.|-+...+ +++.|
T Consensus 410 lAi~YL~~~~~e-------------d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q-------------n~lnE 463 (629)
T KOG2300|consen 410 LAISYLRIGDAE-------------DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ-------------NDLNE 463 (629)
T ss_pred HHHHHHHhccHH-------------HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh-------------ccHHH
Confidence 788888877665 223333334555422 2222333333332221111 24499
Q ss_pred HHHHHHHHHhcCCC-c----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 176 ALKYFLEAEKQHPL-F----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 176 A~~~~~~al~~~p~-~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
|.....+.+++..- + .+-.+..||.+..-.|+..++.+..+-++.+..+.++..
T Consensus 464 aK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 464 AKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 99999999997521 1 113466789999999999999999999988876665543
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=2.6 Score=32.82 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=84.2
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.+..++..+..-...++..++..++..+ ..|..++....-|..+...|+ +.+|+..++.+.+..|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~-------------w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD-------------WDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC-------------HHHHHHHHHHHhccCC
Confidence 3445677777777888999999999877 599999998888888887774 5679999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
..+-+--.++.|+..+++... ..+...+++..| ++.+......+
T Consensus 76 ~~p~~kALlA~CL~~~~D~~W-----------r~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 76 GFPYAKALLALCLYALGDPSW-----------RRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred CChHHHHHHHHHHHHcCChHH-----------HHHHHHHHhcCC-ChHHHHHHHHH
Confidence 999998999999999999873 123555666664 55555444433
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.49 E-value=0.14 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567889999999999999999876
No 310
>KOG1310|consensus
Probab=93.42 E-value=0.36 Score=44.44 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.++.+|.+++...|.....+-+.+.++...+=. ++--.|+...-.|++++|.. ..+++.|+.
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-----------------~d~~~AlrDch~Alrln~s~-~kah~~la~ 453 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-----------------GDSYLALRDCHVALRLNPSI-QKAHFRLAR 453 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-----------------ccHHHHHHhHHhhccCChHH-HHHHHHHHH
Confidence 577889999999999988888888776654311 23367899999999999996 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++..++++.+|+++...+.-..|.+.
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999988888888654
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.42 E-value=0.14 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
...+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4578999999999999999988753
No 312
>KOG1258|consensus
Probab=93.24 E-value=7.5 Score=36.65 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-CCCChhHHHHHhhHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-~p~~~~~~~~lg~~~~ 148 (323)
.+.|.+......+++++--.....+.|..++..+...|+.. -+...+.++.++ .|+.+..+..-+.+.-
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~----------~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS----------LANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh----------HHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 35677888899999998888888888888888888887776 333344445444 4667777777777776
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH---HHHHHhCCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY---YLEMTKNYPVKQ 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~---~~~~al~~~~~~ 225 (323)
..|++ ..|...+++..+--|+. ..+-..-....++.|+.+.+.. .+.....--.+.
T Consensus 378 ~~~n~--------------------~~A~~~lq~i~~e~pg~-v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 378 SNGNF--------------------DDAKVILQRIESEYPGL-VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred hhccH--------------------HHHHHHHHHHHhhCCch-hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 66655 99999999999888997 5766667778889999988883 333333221111
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
... ........++... -.++.+.|...+..+.+..|++ ...+..+-...
T Consensus 437 ~i~-~~l~~~~~r~~~~---------i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~ 485 (577)
T KOG1258|consen 437 GIL-EKLYVKFARLRYK---------IREDADLARIILLEANDILPDC-KVLYLELIRFE 485 (577)
T ss_pred chh-HHHHHHHHHHHHH---------HhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHH
Confidence 110 0111111121111 1567889999999999999987 45544444433
No 313
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.15 E-value=0.12 Score=29.59 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998763
No 314
>PRK10941 hypothetical protein; Provisional
Probab=92.94 E-value=1.2 Score=38.16 Aligned_cols=58 Identities=16% Similarity=-0.008 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+++.|+.+.+..+.++|++ +.-+.-.|.+|.++|.+..|..-++.-+...|+++....
T Consensus 196 ~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 196 QMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred cHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3488888888888888887 466777888888888888888888888888888765543
No 315
>KOG2422|consensus
Probab=92.73 E-value=7.7 Score=36.52 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=89.8
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------------CCCchh--HHHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------------HPLFYS--QNVL 196 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~--~~~~ 196 (323)
.|-+......++.++..+|+......-+ +.|+=.|+.++.- .|.|.. .+++
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLi-------------eR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~ 346 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLI-------------ERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF 346 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHH-------------HHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH
Confidence 3556778888899888888875554444 5666666666642 233210 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCC-CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH-----HHhhC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYPVK-QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE-----AEKQH 270 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~-----a~~~~ 270 (323)
..-..+.+.|-+..|.++++-.++++|. ++....+.+.-.+.. ..+|.=-|+.+.. .+.+-
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr-------------areYqwiI~~~~~~e~~n~l~~~ 413 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR-------------AREYQWIIELSNEPENMNKLSQL 413 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH-------------HHhHHHHHHHHHHHHhhccHhhc
Confidence 2334467889999999999999999998 543322111100000 1223222333222 24556
Q ss_pred CcchhhhhHHHHHHHHHhcC---HHHHHHHHHHhhCCCCh
Q psy11738 271 PLFYSQNVLMLGKTYMRLEN---YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 271 p~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~ 307 (323)
|++ + .-..||..|..... .+.|...+.+|+.+.|.
T Consensus 414 PN~-~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 414 PNF-G-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred CCc-h-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 765 2 23567888887776 57799999999999884
No 316
>KOG1839|consensus
Probab=92.66 E-value=0.49 Score=48.13 Aligned_cols=174 Identities=14% Similarity=0.174 Sum_probs=106.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNK------MLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~------~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
......++.+...+.+|.+++|+. ++... .+|.....+.-+++.+..+++...+ ...-.+|.-..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~A------i~~~~ka~ii~ 1003 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEA------IAQQRKACIIS 1003 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHH------HHhcccceeee
Confidence 456678889999999999998888 55533 4888888889999999988875431 22223333344
Q ss_pred HhhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCC
Q psy11738 83 YNALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 83 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~ 153 (323)
++.+..+ |+....+.+++.......+.. .|...+.++..+ .|.-.....+++.+++.++++
T Consensus 1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~----------~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLS----------GALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred chhccCCCHHHHHHhhHHHHHHHhccCcc----------chhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 4444444 444455566665555555444 233333333332 344444556677776665544
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.|+++.+.|+.+.... ....+..++....-++++..|+.+.+....+
T Consensus 1074 --------------------d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1074 --------------------DTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred --------------------HHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 78888888887753221 1234555667777777777777666655443
No 317
>KOG3783|consensus
Probab=92.62 E-value=8.8 Score=35.81 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=55.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
++++..-.++.+|.+++.+|+...|..+|...+.... .
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~------------------------------------------~ 481 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES------------------------------------------K 481 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------------------------h
Confidence 4444334577789999999999999999887764200 0
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcC-HHHHHHHHHHhhCCCChhHH
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~ 310 (323)
...+|-..|.+++.||..|..+|. ..++..++.+|-+-..+-+.
T Consensus 482 ~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 482 RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 111222235678888888888888 88888888888776644333
No 318
>KOG0890|consensus
Probab=92.42 E-value=21 Score=39.56 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CCh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAV 307 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~ 307 (323)
.|+++.|-.+...|.+..+ +.++...|...+.+|+...|+..+++.++. .|+
T Consensus 1683 aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 6899999999999998885 567899999999999999999999999965 444
No 319
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.34 E-value=0.3 Score=34.41 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcC-----CC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 171 SSYEEALKYFLEAEKQH-----PL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~-----p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|..|++.+.+.+... +. ....+.+++|.+....|++++|+..+++|+++.....+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 56688877777766542 11 123678889999999999999999999999986555443
No 320
>KOG2396|consensus
Probab=92.30 E-value=1.6 Score=40.17 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=73.5
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.....|.+|..--+.|...|.....++...+.+ .+--+.|.+++..+|++ +..|..-+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~--------------------~~v~ki~~~~l~~Hp~~-~dLWI~aA~ 147 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY--------------------GEVKKIFAAMLAKHPNN-PDLWIYAAK 147 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHhCCCC-chhHHhhhh
Confidence 344678999999999999998887766655433 77788999999999998 798988888
Q ss_pred HHHHcCC-HHHHHHHHHHHhCCCCCCchhhh
Q psy11738 201 TYMRLEN-YEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 201 ~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
-....+. .+.|...+.+++..+|+++....
T Consensus 148 wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 148 WEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 8777777 99999999999999999975433
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.50 E-value=0.4 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYY--LEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~--~~~al~~~~~ 224 (323)
+.++.+|..+..+|++++|++. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999999 5476666554
No 322
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.44 E-value=1.5 Score=39.41 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=55.3
Q ss_pred hHHHhhccHHHHHHHHHhC---CCCCCH--H--------HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 22 DDLFEEQQFEEVNKMLESS---EYKEDV--E--------IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~---~~~~~~--~--------~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
..-...|+|..|++++.+- ..|..+ + +--++..||..+++. +-|+....+.+.+
T Consensus 191 ~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp-------------dlALnh~hrsI~l 257 (569)
T PF15015_consen 191 KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP-------------DLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC-------------chHHHHHhhhhhc
Confidence 3333456666777777663 232221 1 123677788777754 4489999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccc
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEG 111 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~ 111 (323)
+|.+..-|.+.+.+...+.+|.+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~e 280 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSE 280 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999884
No 323
>KOG4814|consensus
Probab=91.40 E-value=1.8 Score=41.01 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 275 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~ 275 (323)
.+-+.-..+..+|..++++|...+..-|.+.....+. -..+.++.++++ ..+.+.|.+++..|-+.+|.. +
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~Fa-----K~qR~l~~CYL~---L~QLD~A~E~~~EAE~~d~~~-~ 428 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFA-----KIQRALQVCYLK---LEQLDNAVEVYQEAEEVDRQS-P 428 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHH-----HHHHHHHHHHhh---HHHHHHHHHHHHHHHhhcccc-H
Confidence 3345557888999999999999999888886554431 233444444444 567899999999999999987 6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
-..+.+-.+....|.-++|..+.......
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 77788888889999999999988777655
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.36 E-value=0.3 Score=27.92 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.++..||.+-...++|++|+.-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999876
No 325
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.12 E-value=1.3 Score=36.84 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHH---------HhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhc
Q psy11738 275 SQNVLMLGKTYM---------RLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 275 ~~~~~~lg~~y~---------~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~ 322 (323)
+..+-.+|..+. ..++...|..++++|+.++|+...+..++++.+.|+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Confidence 345666777773 456788999999999999999999988888887775
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.86 E-value=3.1 Score=31.96 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
++...++..--+.|+.++....-|.++...|++ .+|+..|....+-.+.. +.+.-.++.
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w--------------------~eA~rvlr~l~~~~~~~-p~~kAL~A~ 86 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNY--------------------DEAARILRELLSSAGAP-PYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCH--------------------HHHHHHHHhhhccCCCc-hHHHHHHHH
Confidence 455566666678999999999999999998876 99999999999977775 677788899
Q ss_pred HHHHcCCHHH
Q psy11738 201 TYMRLENYEQ 210 (323)
Q Consensus 201 ~y~~~g~~~~ 210 (323)
|+.-+||.+-
T Consensus 87 CL~al~Dp~W 96 (153)
T TIGR02561 87 CLNAKGDAEW 96 (153)
T ss_pred HHHhcCChHH
Confidence 9999999763
No 327
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.34 E-value=11 Score=32.27 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLE-------SSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~-------~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
+-+..-+..+++.|++.-|.++.. +...+.+.+..-++.++......-. .++......|+.+. +.-.
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~-----p~r~~fi~~ai~WS-~~~~ 84 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE-----PERKKFIKAAIKWS-KFGS 84 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT------TTHHHHHHHHHHHH-HTSS
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc-----chHHHHHHHHHHHH-ccCC
Confidence 334556666677777777754332 2245556666667777666665322 23566777788777 4444
Q ss_pred CCCCcHHHHHHHHHHHHHhhccc
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
-.-.+++.|..+|..+...+++.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~ 107 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYY 107 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HH
T ss_pred CCCCCHHHHHHHHHHHHhhccHH
Confidence 44457778888888887777665
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.32 E-value=4.1 Score=37.50 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
..|+..-|-+-...++...|.. +..-...+.+...+|+|+.+...+.-+-..-.....+.. +. ...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~-p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~-------~~----~r~-- 366 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQD-PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR-------CR----LRS-- 366 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCC-chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH-------HH----HHh--
Confidence 4466677777888888888887 566667789999999999998876544332111111100 00 111
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
....+++++|+......+.-.-+. +.+...-+..-..+|-+++|..+|++.+.++|..
T Consensus 367 -~~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 367 -LHGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred -hhchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 123577888887776666554444 3433333444556777788888888888886663
No 329
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=10 Score=35.78 Aligned_cols=124 Identities=10% Similarity=-0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHccCCCChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++..+...+.++|.++..+... ....... ++...++-.+..++..+|++ +.+..+|+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~--------------------~~~~~~~~~~~~~l~~~~~~-~~~~~~L~ 108 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPL--------------------ADSTLAFLAKRIPLSVNPEN-CPAVQNLA 108 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccc--------------------ccchhHHHHHhhhHhcCccc-chHHHHHH
Confidence 3445666777888888764332 3322222 34478899999999999998 79999999
Q ss_pred HHHHHcCCHHHHHHH-HHHHhCCCCCCchhhhhh--hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh
Q psy11738 200 KTYMRLENYEQAAYY-LEMTKNYPVKQDKDQCFE--ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~ 276 (323)
......|..-.+... .+.+....|.+....... +..++-+.+ . .++-.++.....++.++.|.+ ++
T Consensus 109 ~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~---l~~~~~~~~~l~~~~d~~p~~-~~ 177 (620)
T COG3914 109 AALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK-------L---LGRTAEAELALERAVDLLPKY-PR 177 (620)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH-------H---hccHHHHHHHHHHHHHhhhhh-hh
Confidence 998877776665554 555888888876543321 111111111 1 456677777888888888876 44
Q ss_pred h
Q psy11738 277 N 277 (323)
Q Consensus 277 ~ 277 (323)
.
T Consensus 178 ~ 178 (620)
T COG3914 178 V 178 (620)
T ss_pred h
Confidence 3
No 330
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.85 E-value=0.87 Score=39.03 Aligned_cols=62 Identities=10% Similarity=-0.130 Sum_probs=51.1
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 78 AYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
|..+|.+|+.+.|.+...|.++|.+....++.- .|.=+|-|++-...-.+.+..+|...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l----------~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL----------DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH----------HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999999999988877 78888999998766668888888887766
No 331
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.85 E-value=0.81 Score=39.44 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH-HHHhcCCcHHHHH
Q psy11738 81 LVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW-CFEITDMPWYQRK 159 (323)
Q Consensus 81 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~-~~~~~~~~~~~~~ 159 (323)
.+.++....|.++..|..++......+.+. +....|..++..+|.|.+.|..-+.. +...+++
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~----------~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani------ 158 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYG----------EMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI------ 158 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCCCceeeeeeccchhhhhccH------
Confidence 345556667888888777666555555444 56677999999999999998774432 3334443
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 195 (323)
+.+...|.++++++|++ +..|
T Consensus 159 --------------~s~Ra~f~~glR~N~~~-p~iw 179 (435)
T COG5191 159 --------------ESSRAMFLKGLRMNSRS-PRIW 179 (435)
T ss_pred --------------HHHHHHHHhhhccCCCC-chHH
Confidence 99999999999999997 5543
No 332
>KOG0530|consensus
Probab=89.54 E-value=12 Score=31.76 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=120.6
Q ss_pred HHHhhhHHHh----hc-cHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 17 FLKKSDDLFE----EQ-QFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 17 ~~~~a~~~~~----~~-~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
-|.++..+|+ .+ .-..|+.+...+ ..|.+-.+|--.-.+...++. .+.+-+.++...++-+
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~------------dL~~El~~l~eI~e~n 108 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS------------DLNKELEYLDEIIEDN 108 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHhC
Confidence 3444444443 34 345677777765 477776665444444444442 3556799999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH----HHHHhh
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK----IANAIF 165 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~----~~~~~~ 165 (323)
|+|-.++.+.-.+...+|++.+ .-.+....++..+..|..+|...-.++...+.+...... +..-++
T Consensus 109 pKNYQvWHHRr~ive~l~d~s~---------rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 109 PKNYQVWHHRRVIVELLGDPSF---------RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred ccchhHHHHHHHHHHHhcCccc---------chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998774 234678889999999999999988888877765322221 111111
Q ss_pred cC----------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cC--CHHHHHHHHHHHh
Q psy11738 166 DT----------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LE--NYEQAAYYLEMTK 219 (323)
Q Consensus 166 ~~----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g--~~~~A~~~~~~al 219 (323)
.+ .+...-+.-+.+..+.+.+.|++ ..+|..|..++.. .| .+...........
T Consensus 180 NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N-eSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 180 NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN-ESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 11 11123466778888899999998 6899999888876 44 1334444444444
No 333
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.29 E-value=4.7 Score=36.45 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCC-CCchhh-hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPV-KQDKDQ-CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~ 276 (323)
+..-...|+|..|++.+.+...+.. ...... ...+ ..|+.-++..+++. +++-+-|+.+-.+.+-++|.+ ..
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v--aSfIetklv~CYL~---~rkpdlALnh~hrsI~lnP~~-fr 263 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV--ASFIETKLVTCYLR---MRKPDLALNHSHRSINLNPSY-FR 263 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH--HHHHHHHHHHhhhh---cCCCchHHHHHhhhhhcCcch-hh
Confidence 3333445556666666665544432 222111 1122 22445555555554 677889999999999999988 68
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.++.-|.|+..+.+|.+|..-+.-|
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987655444
No 334
>PF12854 PPR_1: PPR repeat
Probab=88.72 E-value=1.3 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.8
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
+.|+ ..+|..|-..|.+.|+.++|.+.+++
T Consensus 3 ~~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPD--VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCc--HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3576 37799999999999999999999875
No 335
>KOG1839|consensus
Probab=88.59 E-value=3.4 Score=42.48 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=81.3
Q ss_pred HHHHHHHh-hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCc
Q psy11738 77 SAYFLVYN-ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 77 ~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+++.++.. --.+.|..+..+..++.++..+++..++ +.....|.-..++.+-++ |+....+-+++.+.+..++.
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~A---i~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~- 1031 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEA---IAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNL- 1031 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHH---HHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCc-
Confidence 44446663 3356788899999999999999988721 111112222233444444 34556677777777766654
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
..|+..+.+++.+ .|.- +....+++.++...++++.|+.+++.|++..
T Consensus 1032 -------------------~~al~~~~ra~~l~~Ls~ge~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1032 -------------------SGALKSLNRALKLKLLSSGEDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred -------------------cchhhhHHHHHHhhccccCCCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666666654 4442 3556789999999999999999999999854
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.11 E-value=13 Score=30.25 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=44.9
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A 211 (323)
++++..+.||.+|... +. ++|+..+.+++++.+.+ .+.++..|+.+|..+|+++.|
T Consensus 139 ~t~elq~aLAtyY~kr-D~--------------------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYTKR-DP--------------------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHcc-CH--------------------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 5788888999776543 33 99999999999984332 257899999999999999877
Q ss_pred H
Q psy11738 212 A 212 (323)
Q Consensus 212 ~ 212 (323)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.11 E-value=0.92 Score=26.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.+.|+.+|..+|+.+.|.+.++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46799999999999999999999985
No 338
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.06 E-value=0.88 Score=25.63 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCHHHHHHH--HHHhhCCCCh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYY--LEMTKNYPAV 307 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~--~~~al~~~~~ 307 (323)
.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 467788888889999999988 4466555543
No 339
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.05 E-value=1.5 Score=37.11 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.++++.|+....+.+.++|++ +.-+--.|.+|..+|-+.-|+..+...++.-|++...++++...
T Consensus 194 e~~~~~al~~~~r~l~l~P~d-p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 194 ELQWELALRVAERLLDLNPED-PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCC-hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 578999999999999999998 66678899999999999999999999999988888877776543
No 340
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=87.94 E-value=20 Score=32.35 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc-cCCCC
Q psy11738 31 EEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL-PQHED 91 (323)
Q Consensus 31 ~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~ 91 (323)
.+|...+.-- .....+++....+.+|..+.-+..+ .+.+......=+..++..+ .++|.
T Consensus 155 ~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~--~~r~~kmhkRR~d~Le~~~~~Ln~~ 215 (371)
T PF12309_consen 155 NKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEED--PDRQIKMHKRRADLLEPLLKELNPQ 215 (371)
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4444444332 2445677888889999999888775 5555555566666666665 34443
No 341
>KOG4814|consensus
Probab=87.89 E-value=6.6 Score=37.46 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred HHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 116 IQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 116 ~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+.++..+++.|...+.--|.|.. ....|..+|....++ +.|.+++++|-+.+|.
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL--------------------D~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL--------------------DNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH--------------------HHHHHHHHHHHhhccc
Confidence 34555889999999998887643 244455566665544 9999999999999999
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 190 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+ +..-+.+..+....|.-++|+.+..+..+.
T Consensus 427 ~-~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 427 S-PLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred c-HHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 7 577777888888999999999998887765
No 342
>KOG1258|consensus
Probab=87.78 E-value=25 Score=33.30 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=112.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
.+..+.....+..-.+.....|+++....+++++- =....++|++.++-....|+... |-..+.+
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~-------------~~~~~~~ 356 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL-------------ANNVLAR 356 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH-------------HHHHHHh
Confidence 34455566667777788888999999999999873 34567899999987777765543 3333444
Q ss_pred hccC-CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 85 ALPQ-HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 85 al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
+.++ .|+.+..+...+.+....|++. .|+..+++...--|+...+-..-..+....|+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~----------~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~---------- 416 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFD----------DAKVILQRIESEYPGLVEVVLRKINWERRKGNL---------- 416 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHH----------HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch----------
Confidence 4443 4667777777676666666666 777888888887788777766666666666655
Q ss_pred hhcCCCCCCHHHHH---HHHHHHHhc--CCCchhHHHHHHH-HHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 164 IFDTLPTSSYEEAL---KYFLEAEKQ--HPLFYSQNVLMLG-KTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 164 ~~~~~~~~~~~~A~---~~~~~al~~--~p~~~~~~~~~lg-~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+.+. ..+.....- +++-....+...+ ..+.-.++.+.|...+.+++...|.+.
T Consensus 417 ----------~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 417 ----------EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred ----------hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 3333 222222221 1211011122222 224556778888888888888887764
No 343
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.46 E-value=2.3 Score=30.05 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
..-.+.++++-..+-..++-.+-.||..|.+.|+.+.|...|+.-..+.|.+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 44455666666655544456688999999999999999999999999988764
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.09 E-value=12 Score=28.81 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.+++...+...--+.|+.++....-|.++...|++. +|...|.....-.|..+.+.-.++.|++-+++..
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~----------eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD----------EAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH----------HHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 345666666666788999999999999999999999 8999999998888888988899999999999887
Q ss_pred HHHHH
Q psy11738 155 WYQRK 159 (323)
Q Consensus 155 ~~~~~ 159 (323)
|-...
T Consensus 96 Wr~~A 100 (153)
T TIGR02561 96 WHVHA 100 (153)
T ss_pred HHHHH
Confidence 65443
No 345
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.07 E-value=7.4 Score=32.68 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
+..++.+....++++ +...++++++..+|+ +.+-...+..+|
T Consensus 4 li~~Aklaeq~eRy~----------dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYD----------DMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHH----------HHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHH----------HHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 355677777777777 888899999999876 334444555444
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.88 E-value=5.4 Score=26.70 Aligned_cols=29 Identities=10% Similarity=-0.053 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVIL 103 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 103 (323)
|.+|++.+.+++...|+++........+.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44478888888888888776544444433
No 347
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.59 E-value=3.7 Score=35.28 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC-------CCChhHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN-------YPAVQEATKLLEKA 317 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-------~~~~~~~~~~l~~~ 317 (323)
.++++.++..+++.+..+|-+ ...|..+-.+|...|+...|+..|++.-. +.|..+......++
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 578999999999999999988 78999999999999999999998887655 46666666665554
No 348
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.28 E-value=8.1 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
..+..++.+|...=..|+|++|+.+|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3445566666666666777777654444
No 349
>KOG1464|consensus
Probab=86.21 E-value=3.9 Score=34.74 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQHPLFYS---QNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~---~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|++++++.|.--. .++-.+-.++.++|++++..+.|++.+.
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8999999999999876311 4566677888999999998888887764
No 350
>KOG2581|consensus
Probab=85.86 E-value=12 Score=33.71 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC--CCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPV--KQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
..|+.+..+|...|+...-...+...+.... ++... ...+ +.|.. ..+ ...+.|+.|-....++.--+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~-qavL--iN~LL----r~y---L~n~lydqa~~lvsK~~~pe 239 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG-QAVL--INLLL----RNY---LHNKLYDQADKLVSKSVYPE 239 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh-HHHH--HHHHH----HHH---hhhHHHHHHHHHhhcccCcc
Confidence 5688889999999997776666665554321 11111 1111 11111 111 22455777766665544111
Q ss_pred ---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy11738 271 ---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 271 ---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.+.+++..+++|.+-.-.++|..|.+++.+|+...|++.+--..+.+.
T Consensus 240 ~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 240 AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 112356789999999999999999999999999999855544444443
No 351
>KOG2422|consensus
Probab=85.04 E-value=36 Score=32.35 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcc------------CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChh-
Q psy11738 74 LILSAYFLVYNALP------------QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDST- 138 (323)
Q Consensus 74 ~~~~A~~~~~~al~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~- 138 (323)
-|++|...|.-|+. -.|.+.+.+..++.+....|+.+.+...++ .++=.|++++.- .|....
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie---R~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIE---RGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHH---HHHHHHHHHhccccccccccc
Confidence 35666666655543 357788889999999999999885555444 444456666642 122111
Q ss_pred ---------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCH
Q psy11738 139 ---------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 139 ---------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~~g~~ 208 (323)
-.++|+.+-+... ....|=+.-|.++.+-.++++|. ++.-+.+.+-....+..+|
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~---------------l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQS---------------LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHH---------------HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence 1222222211110 00113348999999999999999 6333344455555788888
Q ss_pred HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 209 EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.--|+.++..-..+.-. .+-++ .|...+|..++.......-..|+..+.+|+...|
T Consensus 395 qwiI~~~~~~e~~n~l~------~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 395 QWIIELSNEPENMNKLS------QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHhhccHh------hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 88888887763321100 00000 1222233333332222246678888888888877
No 352
>KOG2041|consensus
Probab=84.90 E-value=40 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.++.++|..+..+..+++|.++|...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777777777777777777654
No 353
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.84 E-value=5.6 Score=30.37 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS 65 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~ 65 (323)
...++..+...+..|+|+-|..+++.+ -+|+|.++....+.+|..+|....+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 456788999999999999999999987 5999999999999999999876554
No 354
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.81 E-value=15 Score=37.42 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
....|+.|+..|++...--|...+ +.+..|+.+.....-.+.. ....+|...|++.. -.|.-|.-|...+.+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP---RDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh---HHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 456799999999999999988765 5577788777665544332 23446666666543 3456666677777788
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
++++++ ++-+++|..|++.-|.++
T Consensus 563 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 563 QRLGEY--------------------NEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHhhhH--------------------HHHHHHHHHHHHhcCCCC
Confidence 888765 999999999999988873
No 355
>KOG0890|consensus
Probab=84.74 E-value=16 Score=40.32 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=97.2
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
.....+-+++.|......|+++.|...+-++.+..-+++....|+..+..|+. ..|+..++..++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~-------------~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDE-------------LNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccH-------------HHHHHHHHHHHHhh
Confidence 44556677888888888999999998888875555777888888888877754 44888888888654
Q ss_pred -CC----------cHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 90 -ED----------HYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 90 -p~----------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
|+ ... +...++......++++ .......|..+.++.|.....++.+|..+-..-.
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~--------s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~ 1804 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFE--------SKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLE 1804 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchh--------HHHHHHHHHHHHHHcccccCceeeHHHHHHHHhh
Confidence 22 111 2223333444444433 2356688999999999999999999965432210
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHHhcCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEE---ALKYFLEAEKQHPL 189 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~p~ 189 (323)
. . ....+.+.|++.. ++-.|-+++.-...
T Consensus 1805 ~-----~---~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1805 D-----Y---KSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred h-----h---hcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 0 0 0011224455555 66677777775444
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.31 E-value=21 Score=29.06 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHhcCHHHHH
Q psy11738 275 SQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~ 295 (323)
+.++..|+.+|..+|+++.|-
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
Confidence 466888899999999998874
No 357
>KOG2114|consensus
Probab=84.23 E-value=47 Score=33.05 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhccCCCC-cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-CCCChhHHHHHhhHHH
Q psy11738 71 KKQLILSAYFLVYNALPQHED-HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-~p~~~~~~~~lg~~~~ 148 (323)
++..|.-|+...+.- ..+|+ -.+.+..+|..++..|++. +|...|-+.|.. +|...--.+ .
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~----------~A~~qYI~tI~~le~s~Vi~kf------L 408 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFD----------EATDQYIETIGFLEPSEVIKKF------L 408 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHcccCChHHHHHHh------c
Confidence 577788899888764 33333 4557788899999999998 777777777753 332111111 0
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
... .| .+-..+++...+..=.+ .+--..|-.||.++++.++-.++.++.
T Consensus 409 daq-------~I-------------knLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQ-------RI-------------KNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHH-------HH-------------HHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 000 00 23334444444432222 233445678999999988777666543
No 358
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.14 E-value=2.4 Score=38.48 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHH-------HhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 171 SSYEEALKYFLEA-------EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 171 ~~~~~A~~~~~~a-------l~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+|..|++.++-. +..-|.-....++.+|.+|+++++|..|+..|...+.
T Consensus 136 GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457776665432 2222332246799999999999999999999998865
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.88 E-value=11 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+|+..+.++++..++.+..+..+|.+.....++
T Consensus 24 ~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~ 56 (80)
T PF10579_consen 24 QALQKWRKALEKITDREDRFRVLGYLIQAHMEW 56 (80)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 788999999999999998888888766555555
No 360
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=83.56 E-value=3.8 Score=35.49 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=65.2
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM-LGKTYMR 204 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-lg~~y~~ 204 (323)
|.++-..-|+|+..|...+..-...+ .|.+--..|-.+++.+|.+ ++.|.. -..-|..
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k--------------------~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~ 154 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK--------------------MYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFE 154 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhh
Confidence 55666677888888877765444433 3477778899999999998 677665 4555788
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
.++++.+...+.+++.++|.++..+.
T Consensus 155 ~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 155 IANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hccHHHHHHHHHhhhccCCCCchHHH
Confidence 99999999999999999999986654
No 361
>KOG4014|consensus
Probab=83.39 E-value=22 Score=28.56 Aligned_cols=199 Identities=15% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
....++.-.+|+...- -.+.+|++|...|++--+-+. .+..-+.+|..+. .|.-- . -.....
T Consensus 30 ~EK~Pe~C~lLgdYlE------------gi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~-~GKgG-~---~~~l~~ 91 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLE------------GIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYML-AGKGG-D---DASLSK 91 (248)
T ss_pred ccCCchHHHHHHHHHH------------HHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhh-cccCC-C---ccCHHH
Confidence 3455666555555432 345688999999988776654 4555666665433 22221 0 122237
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|++.+..+-. .+.+.+..++|.++....-. +. ...+-.+|.+++.++..++.. .+-++|+..
T Consensus 92 a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~----r~---------~dpd~~Ka~~y~traCdl~~~---~aCf~LS~m 153 (248)
T KOG4014|consen 92 AIRPMKIACD--ANIPQACRYLGLLHWNGEKD----RK---------ADPDSEKAERYMTRACDLEDG---EACFLLSTM 153 (248)
T ss_pred HHHHHHHHhc--cCCHHHHhhhhhhhccCcCC----cc---------CCCCcHHHHHHHHHhccCCCc---hHHHHHHHH
Confidence 8888887775 67888999999887653210 00 011248999999999987654 556667666
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
|+.-. ++ +..-.|.. .+.....+ +.. ..+.+.|+++-.+|-+++- +.+.-+
T Consensus 154 ~~~g~--~k-------~~t~ap~~g~p~~~~~~---~~~-------------~kDMdka~qfa~kACel~~---~~aCAN 205 (248)
T KOG4014|consen 154 YMGGK--EK-------FKTNAPGEGKPLDRAEL---GSL-------------SKDMDKALQFAIKACELDI---PQACAN 205 (248)
T ss_pred Hhccc--hh-------hcccCCCCCCCcchhhh---hhh-------------hHhHHHHHHHHHHHHhcCC---hHHHhh
Confidence 54332 22 22223311 11000011 011 3568899999999998874 455667
Q ss_pred HHHHHHH----hcCHHHHHHHHHHhhCC
Q psy11738 281 LGKTYMR----LENYEQAAYYLEMTKNY 304 (323)
Q Consensus 281 lg~~y~~----~g~~~~A~~~~~~al~~ 304 (323)
+...|.. -.+.++|..+-.+|.++
T Consensus 206 ~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 206 VSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 7776653 23556777777777655
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.21 E-value=6.6 Score=33.75 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..++++.++..+++.+.++|-+ ...|..+-..|...|+...|+..|++..+.
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3467899999999999999998 699999999999999999999999998764
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.98 E-value=21 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccch
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGT 112 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (323)
+..|-+-...+++..|..|......+.+...+|.+++.
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~ 342 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQA 342 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHH
Confidence 34444455555666666666656666666666666643
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.92 E-value=4.5 Score=37.40 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+++++.+... +-++-|.-+..-...++..+.+.|-++.|++.. .||+.. +.+ | .
T Consensus 276 d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-----~D~~~r----FeL----------A------l 329 (443)
T PF04053_consen 276 DFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFV-----TDPDHR----FEL----------A------L 329 (443)
T ss_dssp -HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-----S-HHHH----HHH----------H------H
T ss_pred Chhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc-----CChHHH----hHH----------H------H
Confidence 3455554443 223334432234666788888899888888754 333211 111 0 0
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..|+++.|++..+ ..+. +..|-.||...+..|+++-|.++|.++-+.
T Consensus 330 ~lg~L~~A~~~a~-----~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 330 QLGNLDIALEIAK-----ELDD-PEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HCT-HHHHHHHCC-----CCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred hcCCHHHHHHHHH-----hcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 1466777766543 2223 467889999999999999999998887543
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.85 E-value=9.6 Score=25.77 Aligned_cols=63 Identities=6% Similarity=0.145 Sum_probs=43.1
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHH---HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVE---IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~---~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
....-+++|-.++.+.+.++|+...+++ +.++..+ ++--+.++|+..| .+++.+.+.-+-++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-------------kyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-------------KYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 4556788999999999999999999887 3334333 3445567777777 45556666655443
Q ss_pred C
Q psy11738 88 Q 88 (323)
Q Consensus 88 ~ 88 (323)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 3
No 366
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.28 E-value=29 Score=29.16 Aligned_cols=182 Identities=15% Similarity=0.075 Sum_probs=87.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--E-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~-~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++++..|......|+|++.+..++++ . ..-+.+-...+..+|.+.- +....+...+.......+.
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i------------~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI------------GSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc------------ccchHHHHhhhhHhhhhcc
Confidence 45677788888899999999999886 2 3345666677777775542 1223344444333332222
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH----HHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT----LFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~----~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
.... .....+-........ +-.....+.+...++.+--...+++. +...|.+|.....+..-...-..
T Consensus 70 ~~~~-~~~~~i~~yk~kie~--EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~----- 141 (236)
T PF00244_consen 70 KGNE-KQVKLIKDYKKKIED--ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEA----- 141 (236)
T ss_dssp TTTH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-----
T ss_pred cchh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHH-----
Confidence 2110 111111111111110 01112223444444433333334332 22234444333322111111111
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCCchh--HHHHHHH-HHHHHcCCHHHHHHHHHHHhCC
Q psy11738 168 LPTSSYEEALKYFLEAEKQ-----HPLFYS--QNVLMLG-KTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg-~~y~~~g~~~~A~~~~~~al~~ 221 (323)
-+.|...|++|+++ .|.++. ...++.+ ..|..+|+.++|++..++|+..
T Consensus 142 -----~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 -----AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 17788888888764 666621 1122233 3356699999999999888653
No 367
>KOG1538|consensus
Probab=82.19 E-value=51 Score=31.95 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=89.8
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhCCCCCCH-HH-----HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESSEYKEDV-EI-----IWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~-----~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+.+..|+.+--.|+|.+|-.++.+..+.+.+ +. .|-+++-+...|. +++|+...++--. .|-...
T Consensus 634 ~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~------~~eKKmL~RKRA~---WAr~~k 704 (1081)
T KOG1538|consen 634 NDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGD------PKEKKMLIRKRAD---WARNIK 704 (1081)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCC------hHHHHHHHHHHHH---HhhhcC
Confidence 3455666677788888888888876333321 21 1233443433332 2333333222222 222221
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH------H
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN------A 163 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~------~ 163 (323)
.|.+ .+..+...|+...+..-+.+..=+--.++-+-+++-.+-+....++..+.....++...+.... .
T Consensus 705 --ePka---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksi 779 (1081)
T KOG1538|consen 705 --EPKA---AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSL 779 (1081)
T ss_pred --CcHH---HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHH
Confidence 1211 1233333444432222111111111124444455555555555555444444433222222111 0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.---.+.+++.+|...-++ .|....++|+-.|.-+....+|++|-+.|.+|=+
T Consensus 780 VqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 0001245677877766554 6666556788888888899999999988887633
No 368
>PF12854 PPR_1: PPR repeat
Probab=81.65 E-value=4 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.4
Q ss_pred hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 269 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
+.|+ ..+|..|-..|.+.|+.++|.+.|++
T Consensus 3 ~~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPD--VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCc--HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3566 46789999999999999999999875
No 369
>KOG0529|consensus
Probab=80.66 E-value=44 Score=30.30 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
+.++...+++-+.+...++..+|+.-.+++....++.......- ..-.+.++++++.||.|..+|.+.-.+.
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~--------~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW--------NTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH--------HHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 66778889999999999999999999999999999987666521 1345689999999999999988766543
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH------cCC------HHHHHHHH
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR------LEN------YEQAAYYL 215 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~------~g~------~~~A~~~~ 215 (323)
-..... .....+=+.+..+++.-++.|+ .+|-+...++.. .|. ...-++..
T Consensus 156 ~~~~~~----------------~~~~~~El~ftt~~I~~nfSNY-saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v 218 (421)
T KOG0529|consen 156 EQAERS----------------RNLEKEELEFTTKLINDNFSNY-SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMV 218 (421)
T ss_pred HHHhcc----------------cccchhHHHHHHHHHhccchhh-hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHH
Confidence 322100 0012566788888888898885 777666655541 231 23456777
Q ss_pred HHHhCCCCCCchh
Q psy11738 216 EMTKNYPVKQDKD 228 (323)
Q Consensus 216 ~~al~~~~~~~~~ 228 (323)
..|+=.+|.+...
T Consensus 219 ~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 219 HSAIFTDPEDQSC 231 (421)
T ss_pred HHHHhcCccccce
Confidence 7888888888644
No 370
>KOG4151|consensus
Probab=80.65 E-value=6.3 Score=38.34 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+++.....++++.... |....+.+++..+.--|..++.+-|.+............ +.+...+.
T Consensus 44 ~di~v~l~ra~~~~~E---------~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~--------s~~m~~~l 106 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEE---------GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQA--------SCYMQLGL 106 (748)
T ss_pred cchHHHHHHHHHHHhh---------hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHH--------HHHhhcCc
Confidence 3555666666665433 344556677777777788888888865433221111111 11223458
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHHhhh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAKSYL 321 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 321 (323)
++|.+++..+.-++...|.. ..+++-.+.+|..+++.+-|++...-.....|.. ++.++..+.+.+|
T Consensus 107 ~~~~~~~~E~~la~~~~p~i-~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 107 GEYPKAIPECELALESQPRI-SKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred cchhhhcCchhhhhhccchH-HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999998 6888888999999999999999988888887775 4456666665554
No 371
>KOG3807|consensus
Probab=80.58 E-value=25 Score=30.96 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK 133 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 133 (323)
+..+..+-+.....|++++|+-+.++..++.-- ..-..+|...|++|++..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE------------a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEE------------ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh------------hhhHHHHHHHHHHHHHHH
Confidence 334445567778888999998877766554211 111225666777777654
No 372
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=80.39 E-value=2.4 Score=37.87 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
..-+..|+..++++.+.++|++|..+|.++..+|+.... ...++...|.+|...+.+|-..
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~-eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDN-ESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SS-HHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhccccc-chHHHHHHHHHHHHHHHHHhhc
Confidence 456678889999887788999999999999999998764 1234677899999999887543
No 373
>KOG4014|consensus
Probab=80.11 E-value=29 Score=27.86 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHhhhHHHh-hccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFE-EQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~-~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.-...++.+-. +.+|++|...++.- .+-..+..-+++|..+ ..|..-. .+.+..|+..++.+-+.+ .+
T Consensus 36 ~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~-~~GKgG~-------~~~l~~a~r~~~~aC~~n--~~ 105 (248)
T KOG4014|consen 36 SCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYM-LAGKGGD-------DASLSKAIRPMKIACDAN--IP 105 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhh-hcccCCC-------ccCHHHHHHHHHHHhccC--CH
Confidence 33344444443 68999999999875 5556677777777544 3443321 235678999999998854 56
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC----------cHHHHHHHHH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM----------PWYQRKIANA 163 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----------~~~~~~~~~~ 163 (323)
.+-.++|.++-.-.....+ -.+..+|.+++.++-.+ ++..+.++|..+|..-..- +-........
T Consensus 106 ~aC~~~gLl~~~g~~~r~~---dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~ 180 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKA---DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL 180 (248)
T ss_pred HHHhhhhhhhccCcCCccC---CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence 6666677665432222211 11244788999998866 4667888888776543110 0000000000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
.++-+.|.++--+|.+++- +.+--+++..|.. -.+-++|..+-++|.++
T Consensus 181 ------~kDMdka~qfa~kACel~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 ------SKDMDKALQFAIKACELDI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred ------hHhHHHHHHHHHHHHhcCC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 0123677777777777643 3445555555532 22455666666666554
No 374
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.02 E-value=5.2 Score=34.03 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.+.++.|+.+.++.+.++|+++.-+.-.|.+|..++.+. .|++-+...++.-|+++.+-...+.
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~----------vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH----------VALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch----------hhHHHHHHHHHhCCCchHHHHHHHH
Confidence 446788999999999999999988888999999999888 7888899999999999887655443
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.81 E-value=9.2 Score=30.83 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHH
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l 314 (323)
+..+..++..++.+...|+ +..+..++.++...|+.++|.....++..+-|.++.....
T Consensus 125 ~~l~~~~~~a~~~l~~~P~--~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPD--PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3456677888888888996 6888999999999999999999999999999976665444
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.63 E-value=5.8 Score=34.13 Aligned_cols=48 Identities=21% Similarity=0.077 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.|.+.+|++..++++.++|=+ ...+..|-.++..+||.-.+..+|++-
T Consensus 292 ~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 688999999999999999987 688889999999999988888877663
No 377
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=79.08 E-value=38 Score=28.59 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-CC--CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-KP--DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-~p--~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
..++.+....++++ +...+..+++++ +| -+.+-...|..+|-..= |..
T Consensus 5 v~~Aklaeq~eRyd----------dm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i-------------------~~~ 55 (244)
T smart00101 5 VYMAKLAEQAERYE----------EMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVI-------------------GAR 55 (244)
T ss_pred HHHHHHHHHhcCHH----------HHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhh-------------------ccc
Confidence 44566666667776 777788888876 54 35555666666653321 122
Q ss_pred HHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHc------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHH
Q psy11738 174 EEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRL------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 174 ~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~ 245 (323)
..+.+.+...-+.. .++ .....+..-|... .--.+.+..+.+-+--...+.+..++.+--.+=|++.++.
T Consensus 56 R~s~R~i~sie~ke~~~~~--~~~~~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE 133 (244)
T smart00101 56 RASWRIISSIEQKEESRGN--EDHVASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAE 133 (244)
T ss_pred HHHHHHHhHHHHhhhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 44444444321110 111 1111111111110 0112344444444433333334444333333344555554
Q ss_pred HhhccCCCCcHHHHHHHHHHHHhh-----CCcchhhh--hHHHHHHHH-HhcCHHHHHHHHHHhh
Q psy11738 246 AIFDTLPTSSYEEALKYFLEAEKQ-----HPLFYSQN--VLMLGKTYM-RLENYEQAAYYLEMTK 302 (323)
Q Consensus 246 ~~~~~~~~~~~~~Al~~~~~a~~~-----~p~~~~~~--~~~lg~~y~-~~g~~~~A~~~~~~al 302 (323)
...+.....-.+.|...|+.|.++ .|.++... .++.+..|. .+++.++|....++|+
T Consensus 134 ~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 134 FKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332211111256778888877754 46552222 233334433 5899999987665554
No 378
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.01 E-value=75 Score=31.92 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
...|.+....++++ ++.++.+.++..-|.+.. +...+|.+..-.|+
T Consensus 462 aL~a~val~~~~~e----------~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~------------------- 512 (894)
T COG2909 462 ALRAQVALNRGDPE----------EAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE------------------- 512 (894)
T ss_pred HHHHHHHHhcCCHH----------HHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch-------------------
Confidence 33455555566666 788888888888877533 34455555555544
Q ss_pred CHHHHHHHHHHHHhcC----CCch-hHHHHHHHHHHHHcCCHHHHH--HHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQH----PLFY-SQNVLMLGKTYMRLENYEQAA--YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~----p~~~-~~~~~~lg~~y~~~g~~~~A~--~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+.+|..+...+.++. .-+. ..+....+.++..+|+...|. ..+...-...-.......+.+. ....+.
T Consensus 513 -~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~----~r~~ll 587 (894)
T COG2909 513 -LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR----IRAQLL 587 (894)
T ss_pred -HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH----HHHHHH
Confidence 488888888888762 2211 234555678888999443333 2233222211111110000000 000011
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhh----CC--cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQ----HP--LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~----~p--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+.+ +++.+.......+++ .| ....-.+++|+.++...|++++|...+.....+
T Consensus 588 ~~~~------r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 588 RAWL------RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHH------HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1111 134444444444433 22 221122358999999999999999887766544
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.58 E-value=42 Score=30.47 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=45.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC-C-CCCCH--HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS-E-YKEDV--EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~-~-~~~~~--~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
..+.++..+++.++|..|..++..+ . -|.+. ..+..++++|..-..+ .+++|..++++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-----------d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-----------DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHH
Confidence 4577899999999999999999887 2 24443 4566677777655544 467899999987765
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.11 E-value=75 Score=30.91 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccCCCC----cHHHHHHHHHHHH-HhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HHHHH
Q psy11738 75 ILSAYFLVYNALPQHED----HYAIHKWLAVILN-EKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TLFML 143 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~l 143 (323)
+.-|+.+++-++...+= .+.+++.+|.+|. ...+++ .|..++.|++.+...+.. +.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~----------~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll 106 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLD----------LAETYLEKAILLCERHRLTDLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 45578888888842221 2335667777766 455555 889999999888755322 23445
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL----FYSQNVLMLGKTYM-RLENYEQAAYYLEMT 218 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~y~-~~g~~~~A~~~~~~a 218 (323)
+.++...+. ..|.+...+.++.-.+ .+..++..+-..+. ..+++..|++.++..
T Consensus 107 ~~i~~~~~~---------------------~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~ 165 (608)
T PF10345_consen 107 ARIYFKTNP---------------------KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSI 165 (608)
T ss_pred HHHHHhcCH---------------------HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566555542 3377778887776333 11122222322233 337999999999999
Q ss_pred hCCCC
Q psy11738 219 KNYPV 223 (323)
Q Consensus 219 l~~~~ 223 (323)
.....
T Consensus 166 ~~~a~ 170 (608)
T PF10345_consen 166 AQLAN 170 (608)
T ss_pred HHHhh
Confidence 88753
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.04 E-value=7.4 Score=35.36 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
...|..++.-+|||..|++.++.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~ 147 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN 147 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc
Confidence 33445668899999999998865
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.51 E-value=9.7 Score=30.70 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+..+...++.++..|+ +.++..++.++...|+.++|....+++..+-|.+
T Consensus 128 ~~~~~~a~~~l~~~P~--~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD--PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 6677888888888997 5889999999999999999999999999998843
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.93 E-value=13 Score=32.16 Aligned_cols=49 Identities=20% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
..|.+.+|+...+++++++|=+ ...+..+-.+|..+||--.++++|++-
T Consensus 291 e~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 291 EAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3466799999999999999987 688888888999999988888888764
No 384
>PF13041 PPR_2: PPR repeat family
Probab=74.57 E-value=7 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..+|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 367888999999999999999999998765
No 385
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=74.52 E-value=73 Score=29.53 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.++..+-..-.+..-.+.|...|-++-+..-..... .+..++.....++++..|...|.-.+...|+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v-------------yi~~A~~E~~~~~d~~ta~~ifelGl~~f~d 464 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV-------------YIYCAFIEYYATGDRATAYNIFELGLLKFPD 464 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce-------------eeeHHHHHHHhcCCcchHHHHHHHHHHhCCC
Confidence 344444455556666777888887776553111110 1112222223478889999999999999998
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
. +..-.-.-..+...++-..|...|+++++.-...+.+++-++
T Consensus 465 ~-~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~k 507 (660)
T COG5107 465 S-TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDK 507 (660)
T ss_pred c-hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHH
Confidence 7 443334445566889999999999988876555566555443
No 386
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=73.96 E-value=5.6 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
+|..+-.+|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366778899999999999999988654
No 387
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.42 E-value=75 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=46.1
Q ss_pred hhhhHHHHHH-hhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcc------cC-CC-CcHHHHHHHHHHHH
Q psy11738 10 VSKVSEEFLK-KSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLAT------HS-SS-LSDADKKQLILSAY 79 (323)
Q Consensus 10 ~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~------~~-~~-~~~~~~~~~~~~A~ 79 (323)
.++.++..+. .||..|..++|+-|+..|+.+ .+-.+-.++..+|.++-..+- .. .. ...++....++.|.
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~ 282 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY 282 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence 3455565544 789999999999999999987 344444455555554443331 11 10 01233455677788
Q ss_pred HHHHhh
Q psy11738 80 FLVYNA 85 (323)
Q Consensus 80 ~~~~~a 85 (323)
..|.++
T Consensus 283 ~~Y~~~ 288 (414)
T PF12739_consen 283 YTYLKS 288 (414)
T ss_pred HHHHhh
Confidence 888773
No 388
>KOG0292|consensus
Probab=72.83 E-value=53 Score=33.01 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh------hhhhhcchhH-HHHHHHHH-hhccCCCCcHHHH--HHHHHH
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD------QCFEITDMPW-YQRKIANA-IFDTLPTSSYEEA--LKYFLE 265 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~-~~~~~a~~-~~~~~~~~~~~~A--l~~~~~ 265 (323)
+..|.-+...|++.+|++.|+.++-.-|--..+ ..-.+..++. |.-++.-. .....+....+.+ +..|-.
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 445666778999999999999987654432211 1111111110 00000000 0122445566666 445555
Q ss_pred HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy11738 266 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 266 a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
-..+.|....-+...--.++.+++++..|.....+.+++.|..+..+...+++
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~ 1127 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIK 1127 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 56677765333333334568899999999999999999988766655544444
No 389
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.66 E-value=6.4 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.5
Q ss_pred CCcHHHHHHHHHHHHhh
Q psy11738 253 TSSYEEALKYFLEAEKQ 269 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~ 269 (323)
.|+|++|+..|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46788888888777754
No 390
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.24 E-value=5.4 Score=26.83 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhCCC
Q psy11738 209 EQAAYYLEMTKNYP 222 (323)
Q Consensus 209 ~~A~~~~~~al~~~ 222 (323)
..|+++..+|+..|
T Consensus 4 ~~Ai~~a~~Ave~D 17 (76)
T cd02681 4 RDAVQFARLAVQRD 17 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 35777777777753
No 391
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.19 E-value=1.1e+02 Score=29.91 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=93.4
Q ss_pred HHHHHHHHHHc-cCCC---ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCch---
Q psy11738 121 TIKHHMNKAIE-LKPD---DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFY--- 191 (323)
Q Consensus 121 ~a~~~~~~al~-l~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~--- 191 (323)
.|+.+++-+++ ..+. ...+++.+|.+++.-. ..++.|..++.+++.+. ++..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT-------------------~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEET-------------------ENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhccccchHHHH
Confidence 56777777774 2221 3456888888887543 23499999999998875 3321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC-
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH- 270 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~- 270 (323)
-.+.+.++.+|.+.+... |+..+++.++...+...... .|..+.+--.+.-. .+++..|++.+.......
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w------~~~frll~~~l~~~--~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW------YYAFRLLKIQLALQ--HKDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH------HHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHhh
Confidence 123556788888888887 99999999887544211111 11111110001101 268889999999888765
Q ss_pred -Ccch-hh--hhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 271 -PLFY-SQ--NVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 271 -p~~~-~~--~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
++++ .. ..+..|.++...+..+.+++...++
T Consensus 171 ~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 171 QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 2331 12 2333466677777777777777766
No 392
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=71.13 E-value=8.7 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHh----cCHHHHHHHHHHhhCC
Q psy11738 276 QNVLMLGKTYMRL----ENYEQAAYYLEMTKNY 304 (323)
Q Consensus 276 ~~~~~lg~~y~~~----g~~~~A~~~~~~al~~ 304 (323)
.+++.||.+|..- .+..+|+.+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3567788887642 3788888888888654
No 393
>KOG2114|consensus
Probab=70.36 E-value=1.2e+02 Score=30.33 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=86.8
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc-CCCCcH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESSE-YKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP-QHEDHY 93 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~ 93 (323)
+-.+.+.++++.-|.-|+.+.+... +++. .+.....|.-++..| ++++|...|-+.+. ++|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kg-------------df~~A~~qYI~tI~~le~s~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKG-------------DFDEATDQYIETIGFLEPSEV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHcccCChHHH
Confidence 4456778889999999999888763 3322 344455555555555 45667777777764 344322
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
--.+ ++ + +++. +...+++..++..-.+..---.|-.+|..+++...+...+...-.+. ---+.
T Consensus 404 i~kf-----------Ld-a-q~Ik---nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~-~~fd~ 466 (933)
T KOG2114|consen 404 IKKF-----------LD-A-QRIK---NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGE-WFFDV 466 (933)
T ss_pred HHHh-----------cC-H-HHHH---HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcc-eeeeH
Confidence 1111 11 1 1111 23344555555444444444455566777776654444433211000 00023
Q ss_pred HHHHHHHHHHH------hcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 174 EEALKYFLEAE------KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 174 ~~A~~~~~~al------~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
+.|++.++++= -+...+ ...-..+-..+..+|+|++|+.++..
T Consensus 467 e~al~Ilr~snyl~~a~~LA~k~-~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 467 ETALEILRKSNYLDEAELLATKF-KKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHHHhChHHHHHHHHHHh-ccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence 55555554421 111110 01111244567788999999999864
No 394
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.00 E-value=94 Score=28.85 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
.|+|.++.-+..=..++.| . +.++-.+|.|.+...+|++|..++.+ +||+++..
T Consensus 475 qgey~kc~~ys~WL~~iaP-S-~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~ 528 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-S-PQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhH
Confidence 6899999999999999999 4 79999999999999999999999955 78876554
No 395
>KOG1914|consensus
Probab=68.60 E-value=1.1e+02 Score=29.09 Aligned_cols=220 Identities=11% Similarity=-0.019 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSL-SDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.+-.+++|+..+......++..... +..+.+..-+++...++++++---.. . ..+|....++++.........
T Consensus 275 l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~-----~~Ly~~~a~~eE~~~~~n~~~ 348 (656)
T KOG1914|consen 275 LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-N-----KLLYFALADYEESRYDDNKEK 348 (656)
T ss_pred HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHhhHHHhcccchhh
Confidence 3445666665554444444321100 01122455678888888887643221 1 122222333332111100112
Q ss_pred HHHHHHHHHHccCCCChhH-HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTT-LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
.-.+++++++.+...++.. +..+-+.-.+.. ++ ..|...|.+|-+..-.- -.++..-+
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e-------Gl-------------kaaR~iF~kaR~~~r~~-hhVfVa~A 407 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE-------GL-------------KAARKIFKKAREDKRTR-HHVFVAAA 407 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhh-------hH-------------HHHHHHHHHHhhccCCc-chhhHHHH
Confidence 3345666666665444432 211111111111 11 67777888877743221 13333333
Q ss_pred HH-HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh--CCcchhh
Q psy11738 200 KT-YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--HPLFYSQ 276 (323)
Q Consensus 200 ~~-y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~--~p~~~~~ 276 (323)
.+ |.-+++.+-|...|+-.++..++++.-.. .+.+ -+. ..++-..|...|++++.. .|+-...
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~-~Yld----------fL~---~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVL-KYLD----------FLS---HLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHH-HHHH----------HHH---HhCcchhHHHHHHHHHhccCChhhhHH
Confidence 33 66788889999999998888777654211 1000 000 034455677778877766 5554345
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
+|..+-..-..-|+...+++.=++-.
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55555555556677766665444433
No 396
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.93 E-value=11 Score=19.92 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
|..+-.+|.+.|++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 566778899999999999999987653
No 397
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.84 E-value=34 Score=22.91 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+.|..+..+|++.|.. |++. +.+..+.+|++.+.+++...|+++........+
T Consensus 4 ~~A~~~a~~AVe~D~~---------------gr~~---eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 4 EMARKYAINAVKAEKE---------------GNAE---DAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHHhc---------------CCHH---HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3477777777776643 3333 344555689999999999999998766555544
No 398
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=66.69 E-value=85 Score=27.09 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=56.0
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT-----LPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
.+.++.=++-.|++..++..+|.++...+ |..|..+.+-.-. ....-.+.|..++.+|++++|+. ..+...
T Consensus 63 ~~~LkaWv~a~P~Sy~A~La~g~~~~~~A---w~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~-~~A~~~ 138 (277)
T PF13226_consen 63 LAVLKAWVAACPKSYHAHLAMGMYWVHRA---WDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRP-VAAAIG 138 (277)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHH---HHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHH
Confidence 34556667889999999999998887654 1111100000000 00001289999999999999996 678888
Q ss_pred HHHHHHHcCCHHHHHH
Q psy11738 198 LGKTYMRLENYEQAAY 213 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~ 213 (323)
+-.+-...|+++==..
T Consensus 139 m~~~s~~fgeP~WL~~ 154 (277)
T PF13226_consen 139 MINISAYFGEPDWLAA 154 (277)
T ss_pred HHHHHhhcCCchHHHH
Confidence 8788778888764333
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.94 E-value=19 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
+.+.+...|.+++...|.. +..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~-~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKS-VELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC-hHHHHHHHH
Confidence 4667888889999888876 677665543
No 400
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.76 E-value=84 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
...+-+|+..++.++..+|.|.....++..+|..+|-..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~ 234 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGS 234 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Confidence 456778999999999999999999999999999888777
No 401
>KOG0686|consensus
Probab=63.74 E-value=33 Score=31.07 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh---
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--- 269 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~--- 269 (323)
.++.-+|..|...|+++.|+.+|-++-...-...-. ..++.- -+-.++ -+++|-.-+.+-.+|...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv-----Inm~ln--~i~VSI----~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV-----INMCLN--LILVSI----YMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH-----HHHHHH--HHHHHH----hhcchhhhhhHHHHHHhCchh
Confidence 467789999999999999999998865443221110 111000 011111 145665555555555443
Q ss_pred ----CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 270 ----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 270 ----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.+...+.+...-|.+...+++|..|..+|-.+
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222355677788999999999999988654
No 402
>PF13041 PPR_2: PPR repeat family
Probab=63.58 E-value=29 Score=20.62 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCC--CChhHH
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNY--PAVQEA 310 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~~~~~~ 310 (323)
..|..+-..|.+.|++++|.+.|++-.+. .|+.-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 56777777888888888888888877654 555433
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.98 E-value=26 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.++|+...+.-++-+|.+ ....-.+-..|.-.|++++|..-++-+-.++|+...
T Consensus 16 sL~dai~~a~~qVkakPtd-a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTD-AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred cHHHHHHHHHHHHhcCCcc-ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4489999999999999998 677777889999999999999999999999988753
No 404
>KOG0546|consensus
Probab=61.35 E-value=38 Score=30.11 Aligned_cols=66 Identities=15% Similarity=0.014 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
.+.+..|+.....+++.+++...+|+..+..+..+.++. +|.+.+..+....|++......+...-
T Consensus 288 ~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~----------~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD----------EALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh----------hhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 334556788888888899999999999999999998888 888999999999999988766655443
No 405
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=60.93 E-value=1e+02 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=31.3
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC-C--C--CCCHHHHHHHHHHHHHh
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS-E--Y--KEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~-~--~--~~~~~~~~~la~~y~~~ 59 (323)
+++..|...-..++|++.+..++++ + . .-+.+-...+..+|.+.
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~ 51 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNV 51 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhh
Confidence 3455666666779999999988876 2 2 34667777788888654
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.83 E-value=1e+02 Score=25.99 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
.....+|.-|...|++++|+.+|+.+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445567888888888888888888773
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.79 E-value=17 Score=27.81 Aligned_cols=38 Identities=13% Similarity=-0.098 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
+.++-|.++...++..+|+|.++...++.+|..+|.-.
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 35677999999999999999999999999998888765
No 408
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.59 E-value=47 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=12.7
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
..++.+|...-..|+|++|+.+|..
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~ 31 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQH 31 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555444455566665554443
No 409
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=59.99 E-value=18 Score=19.95 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHhCC
Q psy11738 193 QNVLMLG--KTYMRLE-----NYEQAAYYLEMTKNY 221 (323)
Q Consensus 193 ~~~~~lg--~~y~~~g-----~~~~A~~~~~~al~~ 221 (323)
.+.+.|| .+|..-. ++++|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4667777 4444333 478899998888653
No 410
>KOG4151|consensus
Probab=59.95 E-value=41 Score=33.08 Aligned_cols=103 Identities=11% Similarity=0.042 Sum_probs=70.3
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
..-.+++.++.++.|.+|..-+... .++..+...-..+-+|..++ .+++.+++.-.+-++...
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~-----------l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLG-----------LGEYPKAIPECELALESQ 123 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcC-----------ccchhhhcCchhhhhhcc
Confidence 3456777888888888884434332 24455555566677777666 345677888899999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
|....+....+.+|...+.++ -|.+.+.-....+|.+..+
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d----------~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLD----------LAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHH----------HHHHHHHHHhcCCCCcchH
Confidence 999888888888888888755 3444455555666666443
No 411
>KOG2041|consensus
Probab=59.94 E-value=1.8e+02 Score=28.69 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred HhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHHhcc--cCCCCc-HH----------HHHHHHHHHHHH
Q psy11738 19 KKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLV---RVKYNLAT--HSSSLS-DA----------DKKQLILSAYFL 81 (323)
Q Consensus 19 ~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la---~~y~~~~~--~~~~~~-~~----------~~~~~~~~A~~~ 81 (323)
++|+.----|+|++|..+|..+ +..--++...++| ++|..+.. -..+.. .+ .-...+++|.++
T Consensus 739 q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444458888888888776 2222344443333 23322221 111100 00 113346677777
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
|.+.-.. -.+..+++.+.++. -++.....-|++....-.+|..+-+.|-.
T Consensus 819 Y~~~~~~--------e~~~ecly~le~f~--------------~LE~la~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 819 YSYCGDT--------ENQIECLYRLELFG--------------ELEVLARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHhccch--------HhHHHHHHHHHhhh--------------hHHHHHHhcCcccchHHHHHHHHHhhchH
Confidence 7654322 23445666666665 25555666788888888888888777654
No 412
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.68 E-value=16 Score=23.77 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=10.5
Q ss_pred HHHHHHhcCHHHHHHHHHHhh
Q psy11738 282 GKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al 302 (323)
|.-+-..|++++|+.+|.+++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555554444
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.68 E-value=38 Score=28.10 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+...++|...+.-++-+|.+ ......+-+.|.-.|++++|...++-+-++.|+
T Consensus 14 ~~sL~dai~~a~~qVkakPtd-a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTD-AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred hccHHHHHHHHHHHHhcCCcc-ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 567899999999999999998 777888889999999999999999999999777
No 414
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.33 E-value=37 Score=31.12 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc----h--hhhhhhcchhHHHHHHHHHh---hccCCCCcHHHHHHH---
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD----K--DQCFEITDMPWYQRKIANAI---FDTLPTSSYEEALKY--- 262 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~----~--~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~Al~~--- 262 (323)
.+..|.-+...|+|.+|+..|+.++..-|-.. . .....+..++. ..-++-.+ .+..+....++..+.
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icr-EYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICR-EYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34456667788889999888888765422211 1 01111111111 11111111 112222333333222
Q ss_pred --HHHHHhhCCcchhhhhHHHHHH-HHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 263 --FLEAEKQHPLFYSQNVLMLGKT-YMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 263 --~~~a~~~~p~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
|-....+.|.. ...-+..|+. .++.++|..|..+.++.|++.|..+ ..+++++++
T Consensus 286 AAYFThc~LQp~H-~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~---~a~qArKil 343 (422)
T PF06957_consen 286 AAYFTHCKLQPSH-LILALRSAMSQAFKLKNFITAASFARRLLELNPSPE---VAEQARKIL 343 (422)
T ss_dssp HHHHCCS---HHH-HHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH---HHHHHHHHH
T ss_pred HHHHhcCCCcHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH---HHHHHHHHH
Confidence 22223344543 2222333443 4578999999999999999988765 334444443
No 415
>KOG0546|consensus
Probab=58.47 E-value=10 Score=33.49 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HHHHHHHh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KLLEKAKS 319 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 319 (323)
.+.+..|+.....++..++.. ..+++..|..+..+.++++|...++.+....|.+..- +.+..+.+
T Consensus 288 ~~~~~~a~~~~~~~~~~~~s~-tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALRDERSK-TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccCCCcceeccccccccChhh-CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 456667777766677777776 6889999999999999999999999999998885543 44444433
No 416
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.26 E-value=41 Score=25.04 Aligned_cols=28 Identities=4% Similarity=0.005 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
+..+|..-.+.+++-.++-+|+.|+++.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 5678888889999999999999998763
No 417
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=1.3e+02 Score=26.23 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=35.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhCCC---C-------CCHHHHHHHHHHHHHhcccCC
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESSEY---K-------EDVEIIWRLVRVKYNLATHSS 64 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~~~---~-------~~~~~~~~la~~y~~~~~~~~ 64 (323)
++.|+..++.+++++|+..+.+... + ..-.+...++..|...|++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 7889999999999999999988611 1 123356678888888887654
No 418
>KOG1464|consensus
Probab=58.02 E-value=1.2e+02 Score=26.07 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhccCCCCcHH----HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 74 LILSAYFLVYNALPQHEDHYA----IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
..++|+..|++.+++.|+-.+ ++...-.+...++++....+ .+.+...+...|..-+-........+-.+ ..
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~---~Y~qlLTYIkSAVTrNySEKsIN~IlDyi-St 117 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMME---RYKQLLTYIKSAVTRNYSEKSINSILDYI-ST 117 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHH---HHHHHHHHHHHHHhccccHHHHHHHHHHH-hh
Confidence 567899999999999998766 33444566777777773221 22233333333333332221111111111 01
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC----
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ---- 225 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---- 225 (323)
..+...++..+ +-.+..++.|-. ..-+-..-..||.+|...|+|.+-.+.+++.-.-+.+.
T Consensus 118 S~~m~LLQ~FY-------------eTTL~ALkdAKN--eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 118 SKNMDLLQEFY-------------ETTLDALKDAKN--ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred hhhhHHHHHHH-------------HHHHHHHHhhhc--ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 11111111111 223333332221 11011234468999988888887666655543332222
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-hhh----hHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQN----VLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-~~~----~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.......+..+...... .+-. ..+-..--..|.+++.+....+ +.+ .-.=|..+++.|++++|-..|-.
T Consensus 183 D~kKGtQLLEiYAlEIQ----mYT~--qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQ----MYTE--QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhccchhhhhHhhHhh----hhhh--hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 11111222222111110 1111 1111222334556665543220 111 22236778889999998877777
Q ss_pred hhCC
Q psy11738 301 TKNY 304 (323)
Q Consensus 301 al~~ 304 (323)
|++-
T Consensus 257 AFKN 260 (440)
T KOG1464|consen 257 AFKN 260 (440)
T ss_pred HHhc
Confidence 7755
No 419
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.94 E-value=55 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhCCcc
Q psy11738 258 EALKYFLEAEKQHPLF 273 (323)
Q Consensus 258 ~Al~~~~~a~~~~p~~ 273 (323)
+|++.|..++...|+.
T Consensus 31 ~aie~l~~~lk~e~d~ 46 (77)
T cd02683 31 EGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 4445555555555543
No 420
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.74 E-value=53 Score=29.12 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHH--HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNV--LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~--~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
.-+...|+.+.+.-|++....+ +.-|.++...++|.+....+..+-..-..+.+....+..... + ++..+..
T Consensus 38 ~~~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~-~---vGst~vN-- 111 (449)
T COG3014 38 ESPKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAG-Y---VGATMIN-- 111 (449)
T ss_pred hcchhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheecccccc-c---hhhhhhc--
Confidence 3455667777777666533333 345889999999988877776653322222111111111100 0 1111110
Q ss_pred CCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
....+.+|..+ ....+.+|.-|+...|++.|.--|.++...
T Consensus 112 ------------DNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 112 ------------DNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred ------------cchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 11112233322 234567788888888888888888888766
No 421
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=56.09 E-value=28 Score=18.27 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.|..+-.++.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788899999999999999987654
No 422
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=54.84 E-value=25 Score=18.60 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHH
Q psy11738 78 AYFLVYNALPQHEDHYAIHKWLAVILNE 105 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~~~~~~~~~~~~ 105 (323)
.+.+...++..+|+|-.++...-.++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4778889999999999998877666543
No 423
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.12 E-value=58 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=15.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+-.++.+|-..=+.|++++|+.+|..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455566666666777777665544
No 424
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.56 E-value=1.9e+02 Score=26.92 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=14.9
Q ss_pred hHHHhhccHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhc
Q psy11738 22 DDLFEEQQFEEVNKMLESS-EYK-EDVEIIWRLVRVKYNLA 60 (323)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~la~~y~~~~ 60 (323)
...+..|+++++..++... ..| -..+...+++.-+...|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 3445578888876666521 111 12333445555444444
No 425
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.42 E-value=38 Score=22.46 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhCCCChh
Q psy11738 292 EQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~ 308 (323)
..|++.|.+++...|++
T Consensus 32 ~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 32 KKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHhccCCCH
Confidence 34455555556565543
No 426
>KOG0276|consensus
Probab=53.25 E-value=50 Score=31.65 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
+....++..+..+|-.++|++ +..||++..... ...|+++.|.+...++ +
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~-----~s~D~d~rFela--------------------l~lgrl~iA~~la~e~---~-- 664 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALE-----LSTDPDQRFELA--------------------LKLGRLDIAFDLAVEA---N-- 664 (794)
T ss_pred hhhhhHHhHhhhccchHhhhh-----cCCChhhhhhhh--------------------hhcCcHHHHHHHHHhh---c--
Confidence 456667777777777766665 233444322111 1146677776654432 2
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
. ..=|-.||.+.+..|++..|.+|+.+|-.+.
T Consensus 665 s-~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 665 S-EVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred c-hHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 2 3447888999999999999999998876543
No 427
>KOG2581|consensus
Probab=52.31 E-value=98 Score=28.25 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHh--cCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 172 SYEEALKYFLEAEK--QHPLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 172 ~~~~A~~~~~~al~--~~p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
.|+.|-+...++.- -..++ .+..++++|.+..-+++|..|.+++-.|+...|++
T Consensus 224 lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 224 LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 45778777777652 11221 23457789999999999999999999999999985
No 428
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.66 E-value=2e+02 Score=26.19 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=41.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CC-----CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EY-----KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~-----~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
...+..+++.++|..|..++..+ +. ....+.+..++++|.....+ .+++|..++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f-----------d~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF-----------EHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc-----------CHHHHHHHHhh
Confidence 34667899999999999999887 22 12355667788888766654 46789999986
No 429
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.45 E-value=27 Score=23.47 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhC
Q psy11738 258 EALKYFLEAEKQH 270 (323)
Q Consensus 258 ~Al~~~~~a~~~~ 270 (323)
.|+.+.++|++.|
T Consensus 5 ~Ai~~a~~Ave~D 17 (76)
T cd02681 5 DAVQFARLAVQRD 17 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.74 E-value=1.1e+02 Score=22.87 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
..+.+++..+..++.++..+..+...+...
T Consensus 25 ~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 25 ELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 677888999998888888888888777554
No 431
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.68 E-value=2.4e+02 Score=26.85 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=96.1
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHH
Q psy11738 36 MLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKA 114 (323)
Q Consensus 36 ~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 114 (323)
++.+. ....+--+++.++++|...++.. =...+++.++.+-++...-..++..|.. .+...+..
T Consensus 88 ~c~~~l~~~e~kmal~el~q~y~en~n~~--------------l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~ 152 (711)
T COG1747 88 LCTRVLEYGESKMALLELLQCYKENGNEQ--------------LYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAE 152 (711)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCchh--------------hHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHH
Confidence 44444 45566667888888888775432 2555666666666555554445544443 22221110
Q ss_pred HH----------HhHHHHHHHHHHHHccCCCChhHHHHHhhHHH-HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy11738 115 RI----------QQLETIKHHMNKAIELKPDDSTTLFMLGMWCF-EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183 (323)
Q Consensus 115 ~~----------~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 183 (323)
-. ......++.+.+..++-|++.+..+.+-.-.. ..|.- ...-.+......=..+..|.+|++...-.
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEG-RGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 00 00112346788888888888766544332111 11110 00000000001112345789999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHhCCCCCC
Q psy11738 184 EKQHPLFYSQNVLMLGKTYMR--------------------LENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 184 l~~~p~~~~~~~~~lg~~y~~--------------------~g~~~~A~~~~~~al~~~~~~ 225 (323)
++.+..+ ..+.-.+-..++. -.++-.++.-|++.+..+..+
T Consensus 232 l~~d~k~-~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 232 LEHDEKD-VWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhhcchh-hhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9998887 5777777666555 455777888888887777665
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.64 E-value=1.6e+02 Score=24.81 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcC--CCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 172 SYEEALKYFLEAEKQH--PLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~--p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+|++|+++|+.+...- .+. ...++..+..|+..+|+.+..+.+.=+.+
T Consensus 193 ~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 193 DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4499999999997552 111 12567788999999999998887764443
No 433
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.85 E-value=20 Score=24.30 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHhhCC
Q psy11738 255 SYEEALKYFLEAEKQHP 271 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p 271 (323)
.|+.|.++..+++..+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 35667776666666554
No 434
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.79 E-value=29 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
-..+|..+...|++++|..+|-+|+.+.|+-
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 3458999999999999999999999997764
No 435
>KOG0276|consensus
Probab=47.27 E-value=1.3e+02 Score=29.14 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
...|-+...+.++||++.|+. +-.+- +...+|+++ .| ++ |....++..-|..||.+....+
T Consensus 620 va~Fle~~g~~e~AL~~s~D~-d~rFe---lal~lgrl~----------iA---~~--la~e~~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 620 VAHFLESQGMKEQALELSTDP-DQRFE---LALKLGRLD----------IA---FD--LAVEANSEVKWRQLGDAALSAG 680 (794)
T ss_pred HHhHhhhccchHhhhhcCCCh-hhhhh---hhhhcCcHH----------HH---HH--HHHhhcchHHHHHHHHHHhhcc
Confidence 445566777788888887753 22232 333445555 33 22 2233456777889999888887
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 185 (323)
++ ..|.++|.++-.
T Consensus 681 ~l--------------------~lA~EC~~~a~d 694 (794)
T KOG0276|consen 681 EL--------------------PLASECFLRARD 694 (794)
T ss_pred cc--------------------hhHHHHHHhhcc
Confidence 77 667777766543
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.89 E-value=79 Score=22.58 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=36.0
Q ss_pred HHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 262 YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 262 ~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.+.++-..+-...+-.+-.||..|...|+.+.|+.-|+.-..+.|++-.
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 4444444443333455778999999999999999999988888877544
No 437
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=46.59 E-value=1.6e+02 Score=28.16 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
..++..|.+|+.. +..+ .--|..+|.+|++.+++.+|+...-.|-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~H-vYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHH-VYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCc-cccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887765 2222 35588899999999999999999887744
No 438
>KOG1463|consensus
Probab=45.66 E-value=2.2e+02 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.6
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS 40 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~ 40 (323)
..+..+..+...+++++++..+.+.
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~v 30 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSV 30 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHH
Confidence 3488889999999999999999886
No 439
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.97 E-value=3.5e+02 Score=27.48 Aligned_cols=51 Identities=20% Similarity=0.043 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 172 SYEEALKYFLEAEKQHPLFY----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
+.++|++.-+.++..=|.+. ..++..+|.+..-.|++++|..+...+.++.
T Consensus 473 ~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 473 DPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred CHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 34999999999999866541 2567889999999999999999999988764
No 440
>KOG1538|consensus
Probab=43.90 E-value=2.4e+02 Score=27.68 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
..++|.+|....++ .|.+.+..++-.|..+.+..++++|...|.+|=. ..|+...|++
T Consensus 785 e~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr---~~EA~~vLeQ 842 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR---QREAVQVLEQ 842 (1081)
T ss_pred ecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcc---hHHHHHHHHH
Confidence 36788888877665 5554445577778888888888888888877632 3444445444
No 441
>KOG4279|consensus
Probab=43.87 E-value=62 Score=31.94 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
++-.++-..|+...+|+.-+...+....+...-..... ..+.+. .+-++......|+=++|+.....+++....
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~---~nv~f~---YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVET---HNVRFH---YAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhcc---CceEEE---eeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 55666777899999999999988887666322110000 000000 011122334468889999999998887655
Q ss_pred chhhhhHHHHHHHHH---------hcCHHHHHHHHHHhhCCCCh
Q psy11738 273 FYSQNVLMLGKTYMR---------LENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~---------~g~~~~A~~~~~~al~~~~~ 307 (323)
..++.+..-|.+|.. .+..+.|+++|++|++..|.
T Consensus 276 vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 276 VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 445667777777764 46668899999999999887
No 442
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.56 E-value=45 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+.|..+..+++..+. .|+.++|+.+|++++.
T Consensus 5 ~~~A~~~I~kaL~~dE----------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRADE----------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhhh----------------cCCHHHHHHHHHHHHH
Confidence 4777777777777543 3556666666666654
No 443
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=43.35 E-value=99 Score=20.65 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhCCCChhHH
Q psy11738 292 EQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~~~ 310 (323)
..|+++|..++...++..-
T Consensus 30 ~~~i~~~~~~~k~e~~~~~ 48 (75)
T cd02677 30 RAGVDLLLKGVQGDSSPER 48 (75)
T ss_pred HHHHHHHHHHhccCCCHHH
Confidence 3444555555555544333
No 444
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.22 E-value=2.2e+02 Score=24.61 Aligned_cols=135 Identities=15% Similarity=0.101 Sum_probs=81.2
Q ss_pred hhhHHHhhccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
....++..++|++=-..+.+. ......+..+..+.....+.+.... ++. -..-...++.=+...|++..+
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~--~~~----~~~~~~~LkaWv~a~P~Sy~A 79 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSV--VDA----WQARLAVLKAWVAACPKSYHA 79 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchh--hhH----HHhHHHHHHHHHHHCCCChHH
Confidence 567788889998876666664 1211222112222111112222111 111 112455566667789999999
Q ss_pred HHHHHHHHHHhhccc-c--h---------HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHH
Q psy11738 96 HKWLAVILNEKATLE-G--T---------KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~-~--~---------~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
+...|.++...+=.. + . ..--...+.|..++.+|++++|....+...+-++....|..+|+...+
T Consensus 80 ~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l~ 156 (277)
T PF13226_consen 80 HLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAALF 156 (277)
T ss_pred HHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHHH
Confidence 998888776643211 0 0 001234557888999999999999999999888888888887765543
No 445
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.16 E-value=1.2e+02 Score=27.59 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q psy11738 117 QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 117 ~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 188 (323)
.....|++++++|.. .++|..|..++.++..+|++......-.. .-|.+|.+.+.+|=....
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe--------~~Y~eAE~iL~kAN~at~ 393 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQE--------KAYKEAEKILKKANKATN 393 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HH--------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHH--------HHHHHHHHHHHHHhhccc
Confidence 445578888888885 67899999999999999876322221111 114778888887766533
No 446
>KOG3024|consensus
Probab=43.05 E-value=1.5e+02 Score=25.61 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHH----------------hcccCCCCcHHHHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS--------EYKEDVEIIWRLVRVKYN----------------LATHSSSLSDADKK 72 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~la~~y~~----------------~~~~~~~~~~~~~~ 72 (323)
+...+.+++.++.++.|+.++-.- ....-++....+.++|-. +|....+ ..+++
T Consensus 29 ~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~~~~--eper~ 106 (312)
T KOG3024|consen 29 YRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEADPS--EPERK 106 (312)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCCC--ccHHH
Confidence 445667777778888888765431 122334555555555544 1211111 33467
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
..++.|+++-..--+---.+|..|..+|..+..-++.. +|..+|-
T Consensus 107 ~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~----------~a~~HFl 151 (312)
T KOG3024|consen 107 TFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVE----------EARRHFL 151 (312)
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHH----------HHHhHhh
Confidence 77788888877654445568889999999888887777 6777764
No 447
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.78 E-value=94 Score=29.61 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
--|..+|..|++.+++.+|+.+|..|-.
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999998887743
No 448
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.89 E-value=2.4e+02 Score=24.65 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=35.2
Q ss_pred hhhHHHhhccHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHhcccCCC
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--------EYKEDVEIIWRLVRVKYNLATHSSS 65 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~la~~y~~~~~~~~~ 65 (323)
.+-.++..|+|.+|+.+++.. ..++-++.+..-..+|..+.+...+
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~Ks 184 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKS 184 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhh
Confidence 444567789999999877654 2556678888889999999887765
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.76 E-value=45 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=23.8
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHhCCCCCC
Q psy11738 195 VLMLGKTYM---------RLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 195 ~~~lg~~y~---------~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+-.+|..+. ..++...|+.++++|+.++|+-
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 445566663 4467889999999999998875
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.41 E-value=80 Score=23.43 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
...+|..+...|++++|..+|-+|+..-|...
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 45678888888888888888888888866644
No 451
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=40.27 E-value=39 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=27.1
Q ss_pred HHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhcC
Q psy11738 283 KTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323 (323)
Q Consensus 283 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~~ 323 (323)
.+|+.+|++++|..+.+.- |.....-+.+++..++.|
T Consensus 111 k~yl~~~~fd~Al~~~~~~----~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKTN----PAQRDQVLIKQADHLFQK 147 (147)
T ss_pred HHHHhcCcHHHHHHHccCC----HHHHHHHHHHHHHHHhhC
Confidence 5788999999998887542 555555667777777664
No 452
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.95 E-value=1.6e+02 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+..+..+|.+|.+.|+..++-+.+++|.+.
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 577999999999999999999999998764
No 453
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.76 E-value=83 Score=28.29 Aligned_cols=44 Identities=25% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
-+|+-.++.++..+|.+ ....+.+..+|..+|-...|...|...
T Consensus 200 ~~Ai~lLE~~l~~s~~n-~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHN-YQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 78899999999999999 599999999999999999999999653
No 454
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.72 E-value=1.1e+02 Score=20.17 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy11738 74 LILSAYFLVYNALPQHED 91 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~ 91 (323)
.|..|+..+.+++...|+
T Consensus 30 ~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 30 LYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 344466666666666654
No 455
>KOG0686|consensus
Probab=39.53 E-value=1.5e+02 Score=27.11 Aligned_cols=102 Identities=13% Similarity=0.015 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC---ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD---DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.-+|..|...|++. .|.++|-++=.--.+ -...+.++-.+-..+++|+.....+
T Consensus 152 a~~Dl~dhy~~cG~l~----------~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~----------- 210 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLD----------NALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYI----------- 210 (466)
T ss_pred HHHHHHHHHHHhccHH----------HHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHH-----------
Confidence 5566788888888887 555555553222221 2234555555556677775444444
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
.+|...-..-....+...+.....-|.+...+++|+.|..++-.+.
T Consensus 211 --~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 211 --SKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred --HHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333332111111111112345556667777779999999986553
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.61 E-value=92 Score=19.81 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
..+...-..|..+|++++|.+|..+..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556677778899999999999998764
No 457
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=36.48 E-value=3.4e+02 Score=24.92 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCC----------CCcHHHHHHH
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLP----------TSSYEEALKY 262 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~----------~~~~~~Al~~ 262 (323)
-...||..+..+|+|+-|...|+.+.+-..++....++ + ......+.+++ .... ..-++.|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~--A---~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYL--A---GAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHH--H---hHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 46669999999999999999999987754433322221 0 01111222222 1111 1236777777
Q ss_pred HHHHHh---hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 263 FLEAEK---QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 263 ~~~a~~---~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
|.++-. -.|....+..+..+.++...|.+.+|...+-+....
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 777421 122232466777788888999998888777666543
No 458
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.66 E-value=1.3e+02 Score=19.99 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD 135 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 135 (323)
+.+|+..+.+|++.+.. |++. +.+..+..+++.|..+++-.|+
T Consensus 3 l~~A~~l~~~Ave~d~~---------------~~y~---eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKEEE---------------GDYE---AAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHHH---------------hhHH---HHHHHHHHHHHHHHHHhccCCC
Confidence 35577777777665532 2333 2223334666777777776655
No 459
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.92 E-value=1.4e+02 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy11738 74 LILSAYFLVYNALPQHED 91 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~ 91 (323)
.|..|+..+.+++...|+
T Consensus 28 ~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 28 LYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 334466666666666554
No 460
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.75 E-value=1.4e+02 Score=19.69 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 258 EALKYFLEAEKQHP 271 (323)
Q Consensus 258 ~Al~~~~~a~~~~p 271 (323)
.|++.|..++...|
T Consensus 31 ~aie~l~~~~k~e~ 44 (75)
T cd02678 31 HALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHHhhCC
Confidence 33344444444444
No 461
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.65 E-value=1.5e+02 Score=19.79 Aligned_cols=26 Identities=4% Similarity=-0.087 Sum_probs=14.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+..++.+|...=..|+|++|+.+|..
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ 31 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCS 31 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34455555555555666666655444
No 462
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.63 E-value=3.1e+02 Score=26.52 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 23 DLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
.+.++...+.+..+++.. .....+-.++.-|+.+-..+.. +.|..+|++.+..+|+ ++++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~ 81 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNET-------------ERAYALYETLIAQNND--EARYEYA 81 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhh-------------HhHHHHHHHHHHhCCc--chHHHHH
Confidence 344455566666666553 1223333344444444444432 4466777777777766 3444445
Q ss_pred HHHHHhhccc
Q psy11738 101 VILNEKATLE 110 (323)
Q Consensus 101 ~~~~~~~~~~ 110 (323)
.-+...|-..
T Consensus 82 ~~~~~~~~~~ 91 (578)
T PRK15490 82 RRLYNTGLAK 91 (578)
T ss_pred HHHHhhhhhh
Confidence 5555544433
No 463
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.66 E-value=3.1e+02 Score=26.52 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+..++.+....+.-+.-....+......+..+...++.+ +|-.+|++.+.-+|+ +.++..++-+++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETE----------RAYALYETLIAQNND--EARYEYARRLYNTG 88 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhH----------hHHHHHHHHHHhCCc--chHHHHHHHHHhhh
Confidence 345666777777777666666666666677777766666 888999999999999 56666676666666
Q ss_pred CC
Q psy11738 152 DM 153 (323)
Q Consensus 152 ~~ 153 (323)
-.
T Consensus 89 ~~ 90 (578)
T PRK15490 89 LA 90 (578)
T ss_pred hh
Confidence 44
No 464
>KOG4279|consensus
Probab=32.59 E-value=3.2e+02 Score=27.36 Aligned_cols=75 Identities=11% Similarity=-0.029 Sum_probs=50.7
Q ss_pred hccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhc---ccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLA---THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
.|+-.+|+...-.+ +.|-.++.+...|++|..+- ++.. .+..+.|+.+|++|.+..|.--.. .+++
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytD-------a~s~~~a~~WyrkaFeveP~~~sG-IN~a 327 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTD-------AESLNHAIEWYRKAFEVEPLEYSG-INLA 327 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcc-------hhhHHHHHHHHHHHhccCchhhcc-ccHH
Confidence 47788888766655 45666777777888886653 2222 345678999999999999974433 4556
Q ss_pred HHHHHhhcc
Q psy11738 101 VILNEKATL 109 (323)
Q Consensus 101 ~~~~~~~~~ 109 (323)
.++...|+.
T Consensus 328 tLL~aaG~~ 336 (1226)
T KOG4279|consen 328 TLLRAAGEH 336 (1226)
T ss_pred HHHHHhhhh
Confidence 666555543
No 465
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=31.97 E-value=1.3e+02 Score=23.96 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=38.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
|+.++.++|++...++.+-..+--.....+++..+.-+...|+.+.+..+.++++-+
T Consensus 54 F~~i~~~dy~~S~~fL~~hp~l~~E~~~d~Ll~~af~~emegk~~~~~q~vhQsllL 110 (173)
T PF08565_consen 54 FGMIPSGDYEDSEQFLLEHPELLCEQTADALLMWAFDLEMEGKHELARQVVHQSLLL 110 (173)
T ss_dssp HHC----SHHHHHHHHHHCGGG-SHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHhCccccChhhccHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566788999999988666644433466777788888999999999999887654
No 466
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=31.95 E-value=68 Score=23.35 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=20.5
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
.+..++.+|..++..|+.+.|+.++.+
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R 63 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMR 63 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346678888888889999999877665
No 467
>KOG0687|consensus
Probab=31.81 E-value=3.7e+02 Score=23.94 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC--CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK--QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 269 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~ 269 (323)
..++.+.+..|.++||-+.|.+++++.....-. ...+..+....++.+. .+..-..+.++..+..++.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy----------~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY----------LDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh----------ccHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999998887654211 1111122222222221 1122234444544444444
Q ss_pred CCcchh---hhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 270 HPLFYS---QNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 270 ~p~~~~---~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.-+- . +.-.+-|...+...++.+|-..|-.++..
T Consensus 174 GgDW-eRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 174 GGDW-ERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred CCCh-hhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 3321 1 22344577777788888888887665543
No 468
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=31.13 E-value=2.2e+02 Score=21.10 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEK 106 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 106 (323)
.....+.+++..+..++.++..+..+..+|...
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 356789999999999888888888888888654
No 469
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=30.68 E-value=1.5e+02 Score=25.49 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=60.0
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhh
Q psy11738 203 MRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQN 277 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~ 277 (323)
+..++.=.|+..+...+.-.|.+--+..+.- .++.. +--.+-........+.|.+++..|+-+-..-. .-.
T Consensus 6 ~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a---~~lEk-~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 6 YDEKEPLKALHLYDEILKGSPTNLTALIFKA---ACLEK-LYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred hcccchHHHhhhhhhhhccCCcceeEEeehh---hhHHH-HHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 3445555666666666666666632221111 11111 00111122345567888998888887644321 123
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+..+..|+...+|+.|..||.+|+.+-.+
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 566788899999999999999999988433
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=3.9e+02 Score=23.42 Aligned_cols=21 Identities=10% Similarity=0.030 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHhcccCC
Q psy11738 44 EDVEIIWRLVRVKYNLATHSS 64 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~ 64 (323)
.-.+++.++|+.|+++++.+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~n 133 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQN 133 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 447889999999999997654
No 471
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=29.33 E-value=18 Score=34.49 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh--CCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK--NYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
..|..++..|-.-.+.......+.-+..+...|++..|...+...- .++|..........+.+. .
T Consensus 6 ~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~la-------------l 72 (536)
T PF04348_consen 6 QAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLA-------------L 72 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHH-------------H
Confidence 3444555555555554323445556888999999999999998765 233322211111111111 1
Q ss_pred CCCcHHHHHHHHHH--HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 252 PTSSYEEALKYFLE--AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 252 ~~~~~~~Al~~~~~--a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..++++.|+..+.. ...+.+......+..++.+|...|++-+|...+-..-.+
T Consensus 73 ~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 73 AQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp -------------------------------------------------------
T ss_pred hcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 25788899888763 233334432355667799999999998888776554444
No 472
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=29.19 E-value=1.9e+02 Score=19.68 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEG 111 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 111 (323)
.+....++.-..+.++.+|+||..+ |.+-..++.|..
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~L---A~~Qa~l~eyn~ 56 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALL---AAYQSKLSEYNL 56 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHHHH
Confidence 3445667777778889999999874 444444555543
No 473
>KOG0739|consensus
Probab=28.81 E-value=3.4e+02 Score=24.03 Aligned_cols=42 Identities=29% Similarity=0.263 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCcchhhh-hHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 258 EALKYFLEAEKQHPLFYSQN-VLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 258 ~Al~~~~~a~~~~p~~~~~~-~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.|+++|..+++...+. ..+ -...+.|+..+.+-++-..+++.
T Consensus 35 ~aleYF~~~lKYE~~~-~kaKd~IraK~~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 35 NALEYFLHALKYEANN-KKAKDSIRAKFTEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455444443222 111 12334454444444444444443
No 474
>KOG2063|consensus
Probab=28.67 E-value=6.6e+02 Score=25.83 Aligned_cols=180 Identities=10% Similarity=-0.008 Sum_probs=89.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYK-----EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~-----~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
+...+..|...|++++|++++... ..+ .-.+.+-++-+....++.. ..+-.+++....++.+|
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~-----------~~~Li~~y~~wvl~~~p 575 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAE-----------NLDLILEYADWVLNKNP 575 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccc-----------chhHHHHHhhhhhccCc
Confidence 445556666789999999999987 222 1223333333333333332 23456777778777777
Q ss_pred CcHHHHH-----------HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHHHHhcC-CcHHH
Q psy11738 91 DHYAIHK-----------WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWCFEITD-MPWYQ 157 (323)
Q Consensus 91 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~-~~~~~ 157 (323)
...--.+ ....++..... ..-.-++.++++++..... +...+..+...|...-+ .....
T Consensus 576 ~~gi~Ift~~~~~~~~sis~~~Vl~~l~~--------~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 576 EAGIQIFTSEDKQEAESISRDDVLNYLKS--------KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhheeeeeccChhhhccCCHHHHHHHhhh--------hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Confidence 6432100 00111111100 1112466888888887766 44455556655544322 11111
Q ss_pred HHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 158 RKIANAIFDTLPTSS-YEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.+ + ...+.-. .+......+..-..+|+. ...-+...+..+.++|+.++|+..|-..+.
T Consensus 648 ~k-g----~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 648 GK-G----EEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hc-c----ccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11 0 0000000 122222222222223331 113466678888899999999999877665
No 475
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.52 E-value=4.1e+02 Score=23.33 Aligned_cols=123 Identities=12% Similarity=0.015 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHh----cCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC--chhhhhhhcchhHHHHHHHHH
Q psy11738 174 EEALKYFLEAEK----QHPL-FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ--DKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 174 ~~A~~~~~~al~----~~p~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~a~~ 246 (323)
++-++.+.+.++ .+.. .-..++.++|..|.+.++.+.+.+++.+.++.+-.. ..+..+....++.+
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~------- 164 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI------- 164 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh-------
Confidence 555555644443 2312 124789999999999999999999998877642100 01111111122111
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchh--hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~--~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
..+..-.++.++.....++..-+... +.-..-|...+...++.+|-..+-..+....
T Consensus 165 ---y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 165 ---YGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ---hccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 11222355666666666665543100 2233457777777888888887766654433
No 476
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.92 E-value=70 Score=23.10 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
+..|+..|...|.+.+|.+.+.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67888999999999999999888766
No 477
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=27.57 E-value=1.7e+02 Score=21.01 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~ 207 (323)
.|+|..|.+...++-+..+. +..+++.-+.+-..+||
T Consensus 72 ~G~~~~A~k~~~~a~~~~~~-~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKLSDN-PLLNYLLAARAAQAQGD 108 (108)
T ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCC
Confidence 46678888888888776554 34555555555555543
No 478
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=26.69 E-value=88 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhCCCCCCc
Q psy11738 197 MLGKTYMRLE-NYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 197 ~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~ 226 (323)
.+|..+...| +.+++..+|-+|+.+.|+-.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 4899999999 99999999999999987643
No 479
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=26.55 E-value=1.9e+02 Score=26.20 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
..++.||.+|.-..++.+|...++.|+...|.
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 55889999999999999999999999999887
No 480
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.84 E-value=1.2e+02 Score=16.51 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++.|...|++.+..+|+ +.+|...+
T Consensus 3 ~dRAR~IyeR~v~~hp~--~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE--VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC--chHHHHHH
Confidence 47888899999988887 36666554
No 481
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=4.6e+02 Score=22.84 Aligned_cols=135 Identities=12% Similarity=0.003 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh--hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEK--ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
++...++.-+.++..+++-+|++-..+.+.-.++... .++. .-....++.+..||.|...|.+.-.++
T Consensus 85 dk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~----------rEl~itkklld~DsrNyH~W~YR~~vl 154 (328)
T COG5536 85 DKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWG----------RELFITKKLLDSDSRNYHVWSYRRWVL 154 (328)
T ss_pred cchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccc----------hhHHHHHHHhcccccccceeeeEeeee
Confidence 3455677789999999999999988888777776654 2222 223457889999999998887766554
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH---HHHHHHcCC------HHHHHHHHHHH
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML---GKTYMRLEN------YEQAAYYLEMT 218 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l---g~~y~~~g~------~~~A~~~~~~a 218 (323)
....+.. ..+.+....++=..++..++.++ .+|-.. -......|+ +++-+++.-.+
T Consensus 155 ~~ie~~~--------------N~S~~k~e~eytt~~I~tdi~N~-SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~ 219 (328)
T COG5536 155 RTIEDLF--------------NFSDLKHELEYTTSLIETDIYNN-SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDK 219 (328)
T ss_pred ecchhhc--------------cchhHHHHHHhHHHHHhhCCCCh-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh
Confidence 2221110 01223444566666777788873 554443 222233343 45667777777
Q ss_pred hCCCCCCchhh
Q psy11738 219 KNYPVKQDKDQ 229 (323)
Q Consensus 219 l~~~~~~~~~~ 229 (323)
+-.+|.+.+..
T Consensus 220 if~~p~~~S~w 230 (328)
T COG5536 220 IFTDPDNQSVW 230 (328)
T ss_pred hhcCccccchh
Confidence 77788876543
No 482
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=24.56 E-value=3e+02 Score=20.45 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
..+..+-.++.+.|+.+....++++.-.++++.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~ 35 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG 35 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC
Confidence 345556677789999999999999988887665
No 483
>KOG3783|consensus
Probab=23.98 E-value=6.4e+02 Score=24.10 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+-+.+.+.+.......|.+ +.-.++-+..+...|+.+.|+.+++..++ +.-. .+-.++.+....+...
T Consensus 248 d~~~~~~~Ll~~~~~~p~g-a~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~k-----Q~~~l~~fE~aw~~v~---- 315 (546)
T KOG3783|consen 248 DGEECEKALKKYRKRYPKG-ALWLLMEARILSIKGNSEAAIDMESLSIP--IRMK-----QVKSLMVFERAWLSVG---- 315 (546)
T ss_pred cHHHHHHHhHHHHHhCCCC-ccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHH-----HHHHHHHHHHHHHHHH----
Confidence 3377777788888889987 56677889999999998889999988777 2211 2222233333333332
Q ss_pred CCCcHHHHHHHHHHHHhhCCcc
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
..+|..|-..+....+.+...
T Consensus 316 -~~~~~~aad~~~~L~desdWS 336 (546)
T KOG3783|consen 316 -QHQYSRAADSFDLLRDESDWS 336 (546)
T ss_pred -HHHHHHHhhHHHHHHhhhhhh
Confidence 457888888888888776543
No 484
>KOG4056|consensus
Probab=23.76 E-value=1.3e+02 Score=22.81 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
.+|..|...|+++++..++-.|+.+.|...
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 489999999999999999999999877643
No 485
>KOG0687|consensus
Probab=23.40 E-value=5.4e+02 Score=23.00 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhh
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGM 145 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~ 145 (323)
.+++...++++++..++-+- ...-.+++...|..|...|+-+.+.+ .-...+.+++.+.-. -......+|.
T Consensus 80 neeki~eld~~iedaeenlG-E~ev~ea~~~kaeYycqigDkena~~------~~~~t~~ktvs~g~kiDVvf~~iRlgl 152 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLG-ESEVREAMLRKAEYYCQIGDKENALE------ALRKTYEKTVSLGHKIDVVFYKIRLGL 152 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhccHHHHHH------HHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 34556667777766665422 23456788888888988888773222 122345555554432 1223344555
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
+|..+. .+.+.+ +.|...+++.-..+-.| .-...-|...+...+|.+|-..|-.+++..
T Consensus 153 fy~D~~---lV~~~i-------------ekak~liE~GgDWeRrN--RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 153 FYLDHD---LVTESI-------------EKAKSLIEEGGDWERRN--RLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhccHH---HHHHHH-------------HHHHHHHHhCCChhhhh--hHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 544332 111111 44444444432222222 122334777788888999988888777654
No 486
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=22.42 E-value=3.4e+02 Score=20.36 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----hCCCCCCc
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMT----KNYPVKQD 226 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~a----l~~~~~~~ 226 (323)
..-+|+..++.+|+.+=.++|++-| +.+-|.=+
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 3557899999999999999998765 34445433
No 487
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=22.34 E-value=5.6e+02 Score=22.85 Aligned_cols=28 Identities=4% Similarity=-0.083 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.+++..|..+...+++-+++..++.|.+
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 3455566666666777777777777654
No 488
>KOG2997|consensus
Probab=22.20 E-value=1.7e+02 Score=25.87 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=36.8
Q ss_pred hhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHH
Q psy11738 6 AAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWR 51 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~ 51 (323)
....-...+..++++|-..-+.|..-+|+.++..+ .-+.++|..++
T Consensus 11 ekd~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 11 EKDPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 33444456677888888888999999999999998 67788888776
No 489
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.01 E-value=1.1e+02 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=36.9
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYN 58 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~ 58 (323)
...+.+..-|.+|..+|..++|.+|+..+-.+.+.-.|.++-++-..|..
T Consensus 514 ~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~~~ri~~~y~~ 563 (569)
T PRK04778 514 SDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEPGVTKRIEDSYEK 563 (569)
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Confidence 34566778899999999999999999999776333333455566666654
No 490
>KOG0739|consensus
Probab=20.89 E-value=4.3e+02 Score=23.40 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=10.4
Q ss_pred HHHHHHHHhhccCCCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~ 93 (323)
..|++||..+++-..++.
T Consensus 34 ~~aleYF~~~lKYE~~~~ 51 (439)
T KOG0739|consen 34 QNALEYFLHALKYEANNK 51 (439)
T ss_pred HHHHHHHHHHHHhhhcCh
Confidence 336777776666554443
No 491
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=20.85 E-value=1.7e+02 Score=16.25 Aligned_cols=34 Identities=3% Similarity=-0.082 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
+..|.+|.++..... .....+++..++..++..|
T Consensus 2 qt~FnyAw~Lv~S~~----------~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNN----------REDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHHSSS----------HHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhcCCC----------HHHHHHHHHHHHHHHhccC
Confidence 456677777766554 3355778999998887665
No 492
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=20.03 E-value=4.1e+02 Score=20.36 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+..+.-+|.+|.+.|+..+|-+.+.+|-+-
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 577899999999999999999999998654
Done!