Query psy11738
Match_columns 323
No_of_seqs 172 out of 1932
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 17:39:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.4E-31 208.0 27.9 274 9-308 62-372 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-27 2.6E-31 209.5 25.4 234 18-290 139-388 (388)
3 2h6f_A Protein farnesyltransfe 100.0 2.8E-27 9.4E-32 211.9 21.0 247 7-310 90-354 (382)
4 4eqf_A PEX5-related protein; a 100.0 1.1E-27 3.7E-32 213.2 17.8 238 11-307 62-313 (365)
5 2pl2_A Hypothetical conserved 100.0 2.2E-27 7.6E-32 196.6 18.2 201 43-303 2-213 (217)
6 3ieg_A DNAJ homolog subfamily 100.0 3.9E-26 1.3E-30 201.4 26.7 273 8-322 31-354 (359)
7 3hym_B Cell division cycle pro 99.9 5.8E-26 2E-30 198.2 25.1 280 9-318 17-314 (330)
8 3hym_B Cell division cycle pro 99.9 5.1E-26 1.8E-30 198.6 21.4 228 41-307 17-268 (330)
9 2y4t_A DNAJ homolog subfamily 99.9 5.1E-25 1.8E-29 201.0 28.5 291 7-319 19-374 (450)
10 1fch_A Peroxisomal targeting s 99.9 6.5E-26 2.2E-30 201.4 21.2 235 14-308 64-318 (368)
11 3ieg_A DNAJ homolog subfamily 99.9 9.3E-25 3.2E-29 192.5 27.2 259 13-307 2-304 (359)
12 3u4t_A TPR repeat-containing p 99.9 3.4E-26 1.2E-30 194.8 17.0 248 14-317 3-264 (272)
13 3cv0_A Peroxisome targeting si 99.9 3.6E-25 1.2E-29 193.0 20.7 237 12-307 19-272 (327)
14 3uq3_A Heat shock protein STI1 99.9 4.7E-25 1.6E-29 185.7 19.9 226 12-305 3-237 (258)
15 2pl2_A Hypothetical conserved 99.9 3.6E-25 1.2E-29 183.2 18.4 198 11-267 2-212 (217)
16 3fp2_A TPR repeat-containing p 99.9 2.9E-24 1E-28 200.2 25.2 267 12-307 23-410 (537)
17 2y4t_A DNAJ homolog subfamily 99.9 1.1E-24 3.7E-29 198.8 21.8 234 41-308 21-290 (450)
18 2h6f_A Protein farnesyltransfe 99.9 1.3E-24 4.4E-29 194.6 19.2 208 42-308 93-308 (382)
19 2xpi_A Anaphase-promoting comp 99.9 6.1E-24 2.1E-28 200.8 23.6 263 11-315 302-591 (597)
20 3vtx_A MAMA; tetratricopeptide 99.9 4.2E-24 1.4E-28 171.6 18.7 171 92-308 4-174 (184)
21 3fp2_A TPR repeat-containing p 99.9 3.5E-24 1.2E-28 199.6 20.4 245 15-310 244-497 (537)
22 3cv0_A Peroxisome targeting si 99.9 2.1E-24 7.1E-29 188.1 17.2 241 9-308 50-319 (327)
23 4eqf_A PEX5-related protein; a 99.9 1.5E-24 5E-29 192.9 16.5 239 8-304 93-356 (365)
24 2gw1_A Mitochondrial precursor 99.9 1.3E-23 4.3E-28 194.6 23.1 249 11-310 234-484 (514)
25 4g1t_A Interferon-induced prot 99.9 2.8E-24 9.6E-29 197.5 18.5 264 13-308 135-463 (472)
26 1fch_A Peroxisomal targeting s 99.9 4.5E-24 1.5E-28 189.5 18.7 238 8-304 92-359 (368)
27 4g1t_A Interferon-induced prot 99.9 4.9E-23 1.7E-27 189.2 25.0 261 10-310 90-369 (472)
28 2xpi_A Anaphase-promoting comp 99.9 6.8E-23 2.3E-27 193.6 24.9 245 18-307 276-548 (597)
29 3vtx_A MAMA; tetratricopeptide 99.9 2.9E-23 9.9E-28 166.7 16.5 171 12-226 3-175 (184)
30 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-23 7.3E-28 177.5 16.5 229 20-308 11-248 (275)
31 4i17_A Hypothetical protein; T 99.9 1.2E-22 3.9E-27 168.9 18.8 194 90-322 4-228 (228)
32 4abn_A Tetratricopeptide repea 99.9 2E-23 6.9E-28 192.7 15.6 223 29-301 83-318 (474)
33 2q7f_A YRRB protein; TPR, prot 99.9 5.2E-23 1.8E-27 171.9 15.9 207 45-310 22-228 (243)
34 2ho1_A Type 4 fimbrial biogene 99.9 2E-22 7E-27 169.5 19.5 212 41-311 31-245 (252)
35 2q7f_A YRRB protein; TPR, prot 99.9 4.8E-23 1.6E-27 172.0 14.7 220 11-289 20-241 (243)
36 4i17_A Hypothetical protein; T 99.9 3.4E-22 1.2E-26 166.1 19.2 211 10-286 3-225 (228)
37 3u4t_A TPR repeat-containing p 99.9 1.8E-22 6.1E-27 171.7 17.9 201 45-305 2-209 (272)
38 4gyw_A UDP-N-acetylglucosamine 99.9 4.6E-23 1.6E-27 198.1 15.8 174 88-307 4-177 (723)
39 2gw1_A Mitochondrial precursor 99.9 1E-22 3.5E-27 188.4 17.1 238 11-308 183-448 (514)
40 1ouv_A Conserved hypothetical 99.9 2.2E-21 7.4E-26 165.7 23.6 234 10-309 2-256 (273)
41 3mkr_A Coatomer subunit epsilo 99.9 1.3E-21 4.4E-26 169.2 22.1 231 16-311 36-271 (291)
42 2vq2_A PILW, putative fimbrial 99.9 6.1E-22 2.1E-26 163.1 19.1 210 42-310 4-217 (225)
43 3urz_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 162.4 17.3 184 45-320 3-202 (208)
44 4abn_A Tetratricopeptide repea 99.9 1.7E-21 5.6E-26 179.9 19.8 224 46-309 54-292 (474)
45 2ho1_A Type 4 fimbrial biogene 99.9 5.2E-21 1.8E-25 160.9 21.2 211 10-279 32-247 (252)
46 4gyw_A UDP-N-acetylglucosamine 99.9 3.5E-22 1.2E-26 192.0 14.0 175 7-225 2-178 (723)
47 3mkr_A Coatomer subunit epsilo 99.9 5.9E-21 2E-25 165.0 19.6 223 20-307 5-232 (291)
48 2vq2_A PILW, putative fimbrial 99.9 1.4E-20 4.9E-25 154.8 20.9 213 9-280 3-221 (225)
49 2ond_A Cleavage stimulation fa 99.9 1.9E-20 6.4E-25 163.1 22.5 226 31-307 33-273 (308)
50 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-21 1.8E-25 162.5 18.4 229 10-298 39-269 (275)
51 3nf1_A KLC 1, kinesin light ch 99.9 1E-22 3.4E-27 176.2 6.5 256 7-307 20-310 (311)
52 3urz_A Uncharacterized protein 99.9 1.3E-21 4.6E-26 160.6 12.1 170 13-225 3-190 (208)
53 4a1s_A PINS, partner of inscut 99.9 1.2E-21 4.2E-26 176.6 12.7 272 11-313 45-381 (411)
54 3sf4_A G-protein-signaling mod 99.9 1.7E-21 5.7E-26 174.8 12.6 121 9-152 4-142 (406)
55 3ulq_A Response regulator aspa 99.9 1.4E-21 4.8E-26 175.2 11.1 232 20-306 109-370 (383)
56 3uq3_A Heat shock protein STI1 99.9 2.4E-20 8.2E-25 156.7 16.9 195 45-307 4-205 (258)
57 3ro2_A PINS homolog, G-protein 99.8 5.1E-21 1.7E-25 166.5 12.9 247 13-304 4-292 (338)
58 3qky_A Outer membrane assembly 99.8 4.9E-20 1.7E-24 156.3 18.0 191 86-309 8-229 (261)
59 1qqe_A Vesicular transport pro 99.8 3.8E-20 1.3E-24 160.0 17.6 228 29-321 32-284 (292)
60 3qky_A Outer membrane assembly 99.8 4E-20 1.4E-24 156.9 16.5 175 8-225 9-228 (261)
61 2ond_A Cleavage stimulation fa 99.8 1.9E-19 6.5E-24 156.7 19.8 192 75-304 32-232 (308)
62 3sf4_A G-protein-signaling mod 99.8 9.4E-21 3.2E-25 169.8 11.6 253 14-307 47-339 (406)
63 4a1s_A PINS, partner of inscut 99.8 1.4E-20 4.7E-25 169.7 11.9 235 15-273 87-376 (411)
64 2pzi_A Probable serine/threoni 99.8 3.8E-20 1.3E-24 178.0 15.3 204 41-307 389-608 (681)
65 1ouv_A Conserved hypothetical 99.8 2.9E-18 9.8E-23 146.2 25.0 199 42-306 2-217 (273)
66 3as5_A MAMA; tetratricopeptide 99.8 3.8E-19 1.3E-23 141.5 18.1 173 11-227 5-179 (186)
67 3edt_B KLC 2, kinesin light ch 99.8 6.7E-21 2.3E-25 162.1 6.9 235 26-305 20-282 (283)
68 3ro2_A PINS homolog, G-protein 99.8 2.4E-20 8.4E-25 162.2 10.6 253 14-307 43-335 (338)
69 3as5_A MAMA; tetratricopeptide 99.8 5.3E-19 1.8E-23 140.7 17.4 153 76-308 25-177 (186)
70 2pzi_A Probable serine/threoni 99.8 2.1E-19 7.1E-24 172.9 17.0 169 12-228 392-570 (681)
71 4ga2_A E3 SUMO-protein ligase 99.8 3E-20 1E-24 144.5 9.1 126 72-228 10-136 (150)
72 4ga2_A E3 SUMO-protein ligase 99.8 1E-19 3.5E-24 141.4 12.1 147 98-290 2-149 (150)
73 3q15_A PSP28, response regulat 99.8 1E-19 3.6E-24 162.8 13.5 236 17-307 104-368 (378)
74 3dra_A Protein farnesyltransfe 99.8 9.2E-19 3.2E-23 151.2 17.6 241 13-309 31-293 (306)
75 3gyz_A Chaperone protein IPGC; 99.8 6.9E-20 2.4E-24 142.3 8.9 128 121-321 20-147 (151)
76 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.8E-18 1.3E-22 141.6 19.3 185 92-309 3-218 (225)
77 3gyz_A Chaperone protein IPGC; 99.8 2E-19 6.9E-24 139.7 10.2 123 73-226 16-138 (151)
78 4gco_A Protein STI-1; structur 99.8 3.2E-19 1.1E-23 134.4 11.0 114 84-228 4-117 (126)
79 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.7E-18 1.3E-22 141.7 17.7 183 13-228 3-220 (225)
80 2r5s_A Uncharacterized protein 99.8 1.2E-18 4.2E-23 138.9 14.1 164 13-220 5-172 (176)
81 3dss_A Geranylgeranyl transfer 99.8 1.6E-17 5.5E-22 144.4 22.2 246 24-311 39-311 (331)
82 2r5s_A Uncharacterized protein 99.8 1.5E-18 5.2E-23 138.4 13.6 168 43-302 3-171 (176)
83 1qqe_A Vesicular transport pro 99.8 2.1E-18 7.1E-23 149.0 14.5 223 11-284 33-283 (292)
84 3ulq_A Response regulator aspa 99.8 4.5E-18 1.5E-22 152.3 16.2 257 8-307 6-296 (383)
85 4gco_A Protein STI-1; structur 99.8 2.4E-18 8.3E-23 129.5 10.5 118 41-202 8-125 (126)
86 3qou_A Protein YBBN; thioredox 99.7 4.5E-17 1.5E-21 140.3 16.9 167 11-220 114-283 (287)
87 2vsy_A XCC0866; transferase, g 99.7 2.5E-17 8.7E-22 155.2 15.6 167 73-282 3-169 (568)
88 3qou_A Protein YBBN; thioredox 99.7 3.2E-17 1.1E-21 141.3 14.7 169 90-303 114-283 (287)
89 2xm6_A Protein corresponding t 99.7 1.3E-15 4.6E-20 140.8 25.7 248 10-305 35-326 (490)
90 3dss_A Geranylgeranyl transfer 99.7 3.7E-16 1.3E-20 135.8 20.2 204 76-308 47-271 (331)
91 2vgx_A Chaperone SYCD; alterna 99.7 2.3E-17 7.9E-22 127.8 11.1 118 79-227 7-124 (148)
92 2vsy_A XCC0866; transferase, g 99.7 6.4E-17 2.2E-21 152.4 16.1 158 27-228 2-164 (568)
93 2xm6_A Protein corresponding t 99.7 1.7E-15 6E-20 140.0 24.5 253 12-306 145-434 (490)
94 3e4b_A ALGK; tetratricopeptide 99.7 1.8E-15 6.3E-20 138.6 24.1 235 14-306 141-389 (452)
95 4f3v_A ESX-1 secretion system 99.7 5.2E-17 1.8E-21 137.5 12.6 216 8-314 1-247 (282)
96 2vgx_A Chaperone SYCD; alterna 99.7 7.4E-17 2.5E-21 124.9 11.7 127 125-321 9-136 (148)
97 4gcn_A Protein STI-1; structur 99.7 1.7E-17 6E-22 125.0 7.5 120 136-318 7-126 (127)
98 2xcb_A PCRH, regulatory protei 99.7 3.8E-17 1.3E-21 125.5 9.6 117 80-227 5-121 (142)
99 1p5q_A FKBP52, FK506-binding p 99.7 2.5E-18 8.6E-23 151.5 3.3 185 73-304 79-294 (336)
100 3q15_A PSP28, response regulat 99.7 1.2E-16 3.9E-21 142.9 14.1 259 9-307 7-293 (378)
101 2ooe_A Cleavage stimulation fa 99.7 1.2E-15 4.3E-20 142.4 21.3 226 31-307 255-495 (530)
102 3rjv_A Putative SEL1 repeat pr 99.7 4.2E-16 1.4E-20 128.1 15.7 193 77-317 4-209 (212)
103 1dce_A Protein (RAB geranylger 99.7 1.2E-16 4.2E-21 149.9 13.2 203 76-307 46-270 (567)
104 2ooe_A Cleavage stimulation fa 99.7 1.1E-15 3.8E-20 142.7 18.8 194 76-306 255-456 (530)
105 3q7a_A Farnesyltransferase alp 99.7 3.3E-15 1.1E-19 130.4 20.4 248 16-309 55-337 (349)
106 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-15 3.9E-20 139.9 17.9 69 31-110 55-123 (452)
107 2xcb_A PCRH, regulatory protei 99.7 1.6E-16 5.5E-21 121.9 9.6 127 125-321 6-133 (142)
108 3dra_A Protein farnesyltransfe 99.7 4.1E-15 1.4E-19 128.4 19.2 192 76-305 50-251 (306)
109 2c2l_A CHIP, carboxy terminus 99.7 2.8E-16 9.7E-21 134.9 11.8 199 43-305 1-200 (281)
110 2ifu_A Gamma-SNAP; membrane fu 99.7 3.8E-16 1.3E-20 135.8 11.4 195 73-307 5-226 (307)
111 2c2l_A CHIP, carboxy terminus 99.7 1.2E-15 4.2E-20 130.9 14.2 169 90-309 1-169 (281)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.7 4E-15 1.4E-19 121.6 16.7 133 47-226 7-155 (213)
113 1hz4_A MALT regulatory protein 99.7 4.1E-15 1.4E-19 132.3 18.0 242 14-306 14-284 (373)
114 2fo7_A Synthetic consensus TPR 99.7 2.6E-15 8.9E-20 112.5 13.9 134 47-224 2-135 (136)
115 3edt_B KLC 2, kinesin light ch 99.6 1E-15 3.5E-20 129.8 12.1 169 9-221 38-281 (283)
116 2ifu_A Gamma-SNAP; membrane fu 99.6 2E-15 6.8E-20 131.2 13.7 191 51-296 41-253 (307)
117 1zu2_A Mitochondrial import re 99.6 2.9E-15 9.7E-20 115.3 12.8 112 68-190 11-124 (158)
118 3nf1_A KLC 1, kinesin light ch 99.6 9.2E-16 3.1E-20 132.2 11.2 178 87-307 21-227 (311)
119 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-16 7.1E-21 139.2 7.0 151 26-220 125-293 (336)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.2E-14 4.1E-19 118.7 16.8 156 13-225 5-176 (213)
121 2fo7_A Synthetic consensus TPR 99.6 8.3E-15 2.8E-19 109.7 14.0 118 174-307 18-135 (136)
122 3rjv_A Putative SEL1 repeat pr 99.6 4.7E-15 1.6E-19 121.8 13.2 171 11-221 15-197 (212)
123 2e2e_A Formate-dependent nitri 99.6 1.7E-15 5.9E-20 120.3 10.1 125 72-227 23-150 (177)
124 1hz4_A MALT regulatory protein 99.6 5.1E-14 1.8E-18 125.1 20.3 239 16-307 55-325 (373)
125 2hr2_A Hypothetical protein; a 99.6 2.5E-15 8.4E-20 115.9 9.9 112 137-310 11-137 (159)
126 2qfc_A PLCR protein; TPR, HTH, 99.6 1.2E-14 4E-19 125.3 14.5 182 90-311 72-273 (293)
127 4gcn_A Protein STI-1; structur 99.6 1.8E-15 6.2E-20 113.8 8.0 104 91-224 6-115 (127)
128 3upv_A Heat shock protein STI1 99.6 4.3E-15 1.5E-19 111.2 9.9 102 90-222 1-102 (126)
129 3upv_A Heat shock protein STI1 99.6 7.3E-15 2.5E-19 109.9 11.1 119 43-205 1-125 (126)
130 1a17_A Serine/threonine protei 99.6 2E-14 6.9E-19 112.2 13.9 132 46-221 13-146 (166)
131 2qfc_A PLCR protein; TPR, HTH, 99.6 4.2E-14 1.4E-18 121.8 16.6 168 11-221 72-266 (293)
132 1hxi_A PEX5, peroxisome target 99.6 6.9E-15 2.4E-19 109.6 10.1 102 94-226 18-119 (121)
133 3sz7_A HSC70 cochaperone (SGT) 99.6 9.8E-15 3.4E-19 114.6 11.2 111 87-228 5-115 (164)
134 2lni_A Stress-induced-phosphop 99.6 2.9E-14 9.8E-19 106.9 12.1 122 42-207 12-133 (133)
135 2e2e_A Formate-dependent nitri 99.6 1E-14 3.4E-19 115.9 10.0 52 257-309 98-149 (177)
136 3u3w_A Transcriptional activat 99.6 4.4E-14 1.5E-18 121.7 14.6 162 73-307 89-269 (293)
137 3sz7_A HSC70 cochaperone (SGT) 99.6 1.8E-14 6.1E-19 113.1 11.0 117 42-202 7-123 (164)
138 1zu2_A Mitochondrial import re 99.6 3.3E-14 1.1E-18 109.3 11.4 103 113-226 12-125 (158)
139 2vyi_A SGTA protein; chaperone 99.6 2.3E-14 7.9E-19 106.8 10.4 123 42-208 8-130 (131)
140 1a17_A Serine/threonine protei 99.5 1.3E-13 4.4E-18 107.6 14.6 104 92-226 12-115 (166)
141 3q7a_A Farnesyltransferase alp 99.5 1.4E-13 4.8E-18 120.1 16.0 175 76-291 71-258 (349)
142 2hr2_A Hypothetical protein; a 99.5 1.6E-14 5.5E-19 111.3 9.0 105 92-227 10-137 (159)
143 2lni_A Stress-induced-phosphop 99.5 1.1E-13 3.9E-18 103.6 13.3 105 88-223 11-115 (133)
144 3u3w_A Transcriptional activat 99.5 5.8E-14 2E-18 121.0 13.2 169 11-222 72-267 (293)
145 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.4E-15 1.8E-19 135.6 7.0 121 75-226 250-385 (457)
146 2fbn_A 70 kDa peptidylprolyl i 99.5 6.1E-15 2.1E-19 119.5 6.6 150 27-220 17-185 (198)
147 1dce_A Protein (RAB geranylger 99.5 1.5E-13 5.3E-18 128.9 16.5 175 23-230 37-230 (567)
148 2fbn_A 70 kDa peptidylprolyl i 99.5 4.9E-15 1.7E-19 120.1 5.5 167 92-304 3-186 (198)
149 3mv2_B Coatomer subunit epsilo 99.5 1.4E-12 4.7E-17 111.8 20.7 252 13-315 13-293 (310)
150 2vyi_A SGTA protein; chaperone 99.5 7.4E-14 2.5E-18 104.0 11.4 102 89-221 8-109 (131)
151 2kck_A TPR repeat; tetratricop 99.5 4.1E-14 1.4E-18 102.6 9.3 108 88-226 1-111 (112)
152 3gw4_A Uncharacterized protein 99.5 3.7E-14 1.3E-18 114.6 9.8 165 72-309 5-181 (203)
153 3q49_B STIP1 homology and U bo 99.5 6.3E-14 2.1E-18 106.0 10.5 108 87-225 3-110 (137)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.8E-15 2E-19 135.4 5.1 150 26-219 246-413 (457)
155 3q49_B STIP1 homology and U bo 99.5 1.9E-13 6.4E-18 103.4 11.0 121 42-206 5-130 (137)
156 3rkv_A Putative peptidylprolyl 99.5 1.2E-13 4.1E-18 108.1 9.5 120 45-207 10-147 (162)
157 1na0_A Designed protein CTPR3; 99.5 7.9E-13 2.7E-17 97.5 13.4 121 42-206 4-125 (125)
158 1xi4_A Clathrin heavy chain; a 99.5 4.8E-12 1.6E-16 125.7 22.0 232 26-307 1088-1348(1630)
159 1wao_1 Serine/threonine protei 99.5 3.5E-14 1.2E-18 130.8 6.4 125 72-227 19-156 (477)
160 1hxi_A PEX5, peroxisome target 99.5 1.9E-13 6.5E-18 101.7 9.3 100 48-190 19-118 (121)
161 1elw_A TPR1-domain of HOP; HOP 99.5 1.1E-12 3.6E-17 95.9 13.1 105 92-227 3-107 (118)
162 3rkv_A Putative peptidylprolyl 99.5 1.8E-13 6E-18 107.1 8.9 104 92-226 10-131 (162)
163 1elw_A TPR1-domain of HOP; HOP 99.5 8.7E-13 3E-17 96.3 12.1 114 45-202 3-116 (118)
164 1na0_A Designed protein CTPR3; 99.5 1.8E-12 6.1E-17 95.6 13.9 100 93-223 9-108 (125)
165 2dba_A Smooth muscle cell asso 99.5 6.4E-13 2.2E-17 101.5 11.5 113 84-227 19-134 (148)
166 2kck_A TPR repeat; tetratricop 99.5 3.4E-13 1.1E-17 97.7 9.4 108 132-307 1-109 (112)
167 1wao_1 Serine/threonine protei 99.5 2.1E-14 7.3E-19 132.2 3.5 82 121-223 24-105 (477)
168 3gw4_A Uncharacterized protein 99.4 3.4E-13 1.2E-17 108.8 10.1 156 24-222 2-177 (203)
169 1elr_A TPR2A-domain of HOP; HO 99.4 2.2E-13 7.4E-18 101.6 8.0 124 135-321 2-125 (131)
170 1xi4_A Clathrin heavy chain; a 99.4 1.7E-11 5.7E-16 121.9 22.8 196 21-306 1056-1252(1630)
171 2dba_A Smooth muscle cell asso 99.4 1.7E-12 5.9E-17 99.1 12.8 117 42-202 24-143 (148)
172 1b89_A Protein (clathrin heavy 99.4 1.1E-13 3.6E-18 123.8 6.2 166 72-307 74-239 (449)
173 2if4_A ATFKBP42; FKBP-like, al 99.4 2.4E-13 8.2E-18 119.7 7.4 143 87-273 173-332 (338)
174 2xev_A YBGF; tetratricopeptide 99.4 1.4E-12 4.9E-17 97.3 10.6 104 94-227 3-111 (129)
175 2if4_A ATFKBP42; FKBP-like, al 99.4 1.3E-13 4.3E-18 121.5 5.4 123 74-227 194-334 (338)
176 3k9i_A BH0479 protein; putativ 99.4 2.5E-13 8.7E-18 100.2 5.7 88 73-190 4-94 (117)
177 1b89_A Protein (clathrin heavy 99.4 9E-13 3.1E-17 117.8 8.7 125 174-316 194-324 (449)
178 1ihg_A Cyclophilin 40; ppiase 99.4 2.7E-12 9.3E-17 114.3 11.7 124 47-214 224-363 (370)
179 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 99.3 5.1 86 121-227 8-96 (117)
180 2xev_A YBGF; tetratricopeptide 99.4 5.9E-12 2E-16 93.9 11.2 111 48-202 4-120 (129)
181 1elr_A TPR2A-domain of HOP; HO 99.4 2E-12 6.8E-17 96.3 8.3 119 44-207 2-127 (131)
182 4b4t_Q 26S proteasome regulato 99.3 1.8E-12 6.1E-17 117.3 8.2 163 16-222 6-205 (434)
183 3ro3_A PINS homolog, G-protein 99.3 2.9E-12 9.9E-17 98.8 6.8 141 92-305 8-159 (164)
184 3u64_A Protein TP_0956; tetrat 99.3 2.2E-11 7.7E-16 102.0 12.3 177 34-225 52-273 (301)
185 1ihg_A Cyclophilin 40; ppiase 99.3 1.5E-11 5.2E-16 109.4 11.4 101 93-224 223-339 (370)
186 3ro3_A PINS homolog, G-protein 99.3 6.7E-12 2.3E-16 96.8 7.6 134 46-222 9-159 (164)
187 4f3v_A ESX-1 secretion system 99.3 5.2E-12 1.8E-16 106.9 6.8 172 9-224 35-240 (282)
188 2kat_A Uncharacterized protein 99.2 2.1E-11 7.3E-16 89.3 8.3 84 121-225 3-86 (115)
189 3ly7_A Transcriptional activat 99.2 1.8E-10 6.2E-15 100.4 14.2 152 42-226 190-344 (372)
190 2kat_A Uncharacterized protein 99.2 8E-11 2.7E-15 86.2 9.9 101 77-207 3-104 (115)
191 2l6j_A TPR repeat-containing p 99.2 7.7E-12 2.6E-16 90.6 4.1 96 92-217 3-103 (111)
192 1na3_A Designed protein CTPR2; 99.2 1.9E-10 6.4E-15 80.0 9.6 85 91-206 7-91 (91)
193 3mv2_B Coatomer subunit epsilo 99.2 2.4E-09 8.3E-14 91.7 17.8 185 33-277 85-289 (310)
194 2l6j_A TPR repeat-containing p 99.1 2.5E-11 8.4E-16 87.9 4.5 102 136-301 3-104 (111)
195 3ma5_A Tetratricopeptide repea 99.1 7.5E-11 2.6E-15 84.3 6.5 73 132-225 2-74 (100)
196 3ma5_A Tetratricopeptide repea 99.1 1.2E-10 4.2E-15 83.2 6.5 86 186-321 2-87 (100)
197 1klx_A Cysteine rich protein B 99.1 2.2E-09 7.5E-14 81.5 12.2 115 72-221 8-126 (138)
198 4e6h_A MRNA 3'-END-processing 99.1 1.1E-08 3.9E-13 97.4 19.5 188 75-306 325-535 (679)
199 3u64_A Protein TP_0956; tetrat 99.0 1.5E-08 5.3E-13 84.9 16.9 140 72-225 45-237 (301)
200 1na3_A Designed protein CTPR2; 99.0 8.8E-10 3E-14 76.5 8.1 86 43-151 6-91 (91)
201 2kc7_A BFR218_protein; tetratr 99.0 3.2E-10 1.1E-14 80.4 5.4 90 141-273 4-94 (99)
202 4e6h_A MRNA 3'-END-processing 99.0 1.2E-08 4E-13 97.3 17.0 228 32-316 327-582 (679)
203 2kc7_A BFR218_protein; tetratr 99.0 4.7E-10 1.6E-14 79.5 5.6 91 97-226 4-95 (99)
204 4b4t_Q 26S proteasome regulato 99.0 2.3E-09 7.7E-14 96.8 11.1 175 93-306 4-206 (434)
205 1klx_A Cysteine rich protein B 98.9 1.3E-08 4.4E-13 77.1 12.3 50 253-305 74-127 (138)
206 3bee_A Putative YFRE protein; 98.9 1.8E-08 6.1E-13 70.7 10.2 75 133-225 2-76 (93)
207 3ly7_A Transcriptional activat 98.8 1.5E-07 5.3E-12 82.0 17.1 145 12-190 194-343 (372)
208 3n71_A Histone lysine methyltr 98.8 2.6E-08 8.8E-13 91.5 10.8 102 89-220 347-463 (490)
209 3n71_A Histone lysine methyltr 98.8 3.1E-08 1E-12 91.0 10.6 124 169-303 321-463 (490)
210 3bee_A Putative YFRE protein; 98.7 5.6E-08 1.9E-12 68.1 8.5 75 89-190 2-76 (93)
211 1pc2_A Mitochondria fission pr 98.6 1.4E-07 4.6E-12 71.7 7.9 91 121-228 16-107 (152)
212 3qww_A SET and MYND domain-con 98.5 1.4E-07 4.8E-12 85.2 7.5 95 169-305 310-412 (433)
213 1pc2_A Mitochondria fission pr 98.5 5.3E-07 1.8E-11 68.5 9.4 96 74-197 13-110 (152)
214 2v5f_A Prolyl 4-hydroxylase su 98.5 5E-07 1.7E-11 64.7 7.7 72 136-228 4-82 (104)
215 2uy1_A Cleavage stimulation fa 98.4 0.00026 8.8E-09 65.1 26.9 254 10-302 10-381 (493)
216 3qwp_A SET and MYND domain-con 98.3 1.2E-06 4E-11 79.2 7.6 93 170-304 300-400 (429)
217 3qww_A SET and MYND domain-con 98.2 2.6E-06 8.8E-11 76.9 7.7 84 118-221 313-411 (433)
218 2v5f_A Prolyl 4-hydroxylase su 98.2 9.2E-06 3.2E-10 57.9 8.9 76 93-199 5-87 (104)
219 2uy1_A Cleavage stimulation fa 98.0 6.1E-05 2.1E-09 69.3 12.9 52 256-309 195-246 (493)
220 3qwp_A SET and MYND domain-con 98.0 7.3E-06 2.5E-10 74.0 6.4 84 118-221 302-400 (429)
221 1nzn_A CGI-135 protein, fissio 97.9 5.1E-05 1.8E-09 55.4 7.8 92 120-228 18-110 (126)
222 1nzn_A CGI-135 protein, fissio 97.8 0.00016 5.6E-09 52.7 9.0 98 74-199 16-115 (126)
223 4h7y_A Dual specificity protei 97.7 0.00038 1.3E-08 52.1 10.3 115 87-227 7-129 (161)
224 4g26_A Pentatricopeptide repea 97.7 0.0026 9E-08 58.5 18.2 164 20-220 32-203 (501)
225 3o48_A Mitochondria fission 1 97.4 0.0008 2.7E-08 49.3 8.6 62 250-311 53-114 (134)
226 3o48_A Mitochondria fission 1 97.4 0.0013 4.3E-08 48.3 9.3 76 136-228 39-114 (134)
227 4g26_A Pentatricopeptide repea 97.4 0.01 3.5E-07 54.5 17.8 177 100-316 33-218 (501)
228 4h7y_A Dual specificity protei 97.4 0.0017 5.8E-08 48.6 10.0 115 185-308 7-127 (161)
229 1y8m_A FIS1; mitochondria, unk 97.4 0.0025 8.4E-08 47.3 10.7 99 28-146 20-120 (144)
230 1y8m_A FIS1; mitochondria, unk 97.2 0.0016 5.5E-08 48.3 7.8 69 250-318 52-121 (144)
231 3ffl_A Anaphase-promoting comp 96.9 0.0055 1.9E-07 46.8 8.5 78 121-218 38-148 (167)
232 4gns_B Protein CSD3, chitin bi 96.7 0.037 1.3E-06 53.0 15.0 47 171-218 351-397 (754)
233 3kae_A CDC27, possible protein 96.7 0.022 7.4E-07 43.5 10.3 119 132-307 28-146 (242)
234 3ffl_A Anaphase-promoting comp 96.6 0.006 2.1E-07 46.5 6.9 106 171-300 34-147 (167)
235 4gns_B Protein CSD3, chitin bi 95.8 0.14 4.7E-06 49.1 13.3 121 173-302 265-398 (754)
236 3txn_A 26S proteasome regulato 95.3 0.54 1.9E-05 41.4 14.6 112 172-291 114-236 (394)
237 4b4t_R RPN7, 26S proteasome re 94.4 0.28 9.7E-06 43.9 10.6 109 135-271 129-239 (429)
238 1ya0_A SMG-7 transcript varian 94.0 0.3 1E-05 44.5 9.9 65 119-204 168-232 (497)
239 3kae_A CDC27, possible protein 93.7 1.8 6.1E-05 33.1 13.6 102 89-225 29-147 (242)
240 1zbp_A Hypothetical protein VP 93.6 0.93 3.2E-05 37.5 11.2 112 170-307 10-132 (273)
241 1ya0_A SMG-7 transcript varian 93.6 0.3 1E-05 44.5 9.0 64 253-317 165-229 (497)
242 4b4t_S RPN3, 26S proteasome re 93.4 2.7 9.1E-05 38.3 14.7 133 73-227 150-305 (523)
243 4b4t_P 26S proteasome regulato 93.3 0.4 1.4E-05 43.2 9.4 50 13-63 16-73 (445)
244 2ff4_A Probable regulatory pro 93.3 3.9 0.00013 35.8 15.8 108 202-316 125-253 (388)
245 3mkq_A Coatomer beta'-subunit; 92.3 3.8 0.00013 39.3 15.5 19 135-153 679-697 (814)
246 3mkq_B Coatomer subunit alpha; 91.9 3.4 0.00012 31.8 13.2 44 171-220 19-62 (177)
247 4b4t_S RPN3, 26S proteasome re 91.6 0.46 1.6E-05 43.2 7.4 77 187-307 226-302 (523)
248 1zbp_A Hypothetical protein VP 90.8 2.5 8.7E-05 34.9 10.4 117 73-226 11-134 (273)
249 3mkq_B Coatomer subunit alpha; 89.7 5 0.00017 30.9 10.7 96 74-218 20-115 (177)
250 3txn_A 26S proteasome regulato 89.4 10 0.00036 33.2 16.4 168 15-220 20-209 (394)
251 4b4t_R RPN7, 26S proteasome re 89.1 2.2 7.4E-05 38.1 9.6 121 71-221 109-237 (429)
252 1wfd_A Hypothetical protein 15 85.4 6.6 0.00023 26.6 8.6 32 8-39 9-40 (93)
253 2ff4_A Probable regulatory pro 85.2 2.6 9E-05 37.0 7.7 50 170-220 184-233 (388)
254 3mkq_A Coatomer beta'-subunit; 84.8 5.4 0.00018 38.2 10.5 42 173-220 668-709 (814)
255 2w2u_A Hypothetical P60 katani 80.7 4.8 0.00017 26.6 5.8 32 8-39 13-44 (83)
256 4fhn_B Nucleoporin NUP120; pro 79.8 11 0.00038 38.2 10.8 112 186-301 837-964 (1139)
257 4fhn_B Nucleoporin NUP120; pro 78.3 37 0.0013 34.3 14.1 79 128-226 833-933 (1139)
258 3spa_A Mtrpol, DNA-directed RN 77.8 25 0.00085 35.1 11.9 94 96-221 130-230 (1134)
259 4a5x_A MITD1, MIT domain-conta 77.0 13 0.00046 24.6 8.3 29 11-39 13-41 (86)
260 3spa_A Mtrpol, DNA-directed RN 76.9 27 0.00093 34.8 11.9 48 172-221 142-194 (1134)
261 2vkj_A TM1634; membrane protei 74.5 2.7 9.3E-05 27.9 3.0 37 12-48 51-88 (106)
262 2wpv_A GET4, UPF0363 protein Y 71.5 45 0.0015 28.1 18.6 40 71-110 112-151 (312)
263 3ax2_A Mitochondrial import re 70.0 5.5 0.00019 25.6 3.7 31 196-226 21-51 (73)
264 3mv2_A Coatomer subunit alpha; 69.7 43 0.0015 28.3 10.1 35 284-321 216-250 (325)
265 2ynq_A ESSB; membrane protein, 66.3 39 0.0013 25.3 8.8 84 12-110 6-90 (161)
266 2v6y_A AAA family ATPase, P60 65.7 22 0.00074 23.3 6.1 28 12-39 9-36 (83)
267 4gq2_M Nucleoporin NUP120; bet 64.8 56 0.0019 32.3 11.5 99 183-309 832-932 (950)
268 2crb_A Nuclear receptor bindin 63.9 7.6 0.00026 26.1 3.5 25 15-39 16-40 (97)
269 2crb_A Nuclear receptor bindin 62.3 11 0.00039 25.2 4.1 28 275-302 15-42 (97)
270 3ax2_A Mitochondrial import re 61.6 18 0.00061 23.2 4.9 32 278-309 20-51 (73)
271 2cpt_A SKD1 protein, vacuolar 61.5 40 0.0014 23.8 8.2 28 12-39 16-43 (117)
272 4b4t_P 26S proteasome regulato 60.6 91 0.0031 27.6 12.1 98 94-221 138-247 (445)
273 1qsa_A Protein (soluble lytic 55.6 1.3E+02 0.0045 28.0 13.2 25 196-220 385-409 (618)
274 3ubw_A 14-3-3E, 14-3-3 protein 55.2 85 0.0029 25.6 10.6 43 95-147 33-76 (261)
275 4gq2_M Nucleoporin NUP120; bet 54.9 81 0.0028 31.2 10.7 80 126-225 829-930 (950)
276 2wpv_A GET4, UPF0363 protein Y 54.4 97 0.0033 26.0 16.1 31 10-40 9-39 (312)
277 2v6x_A Vacuolar protein sortin 53.4 44 0.0015 21.8 7.9 29 11-39 10-38 (85)
278 2cfu_A SDSA1; SDS-hydrolase, l 53.0 37 0.0013 32.0 7.6 52 14-65 449-502 (658)
279 2vkj_A TM1634; membrane protei 52.3 38 0.0013 22.5 5.2 38 275-312 53-90 (106)
280 2wb7_A PT26-6P; extra chromoso 52.1 37 0.0013 30.5 6.8 60 255-320 454-516 (526)
281 2ijq_A Hypothetical protein; s 51.9 39 0.0013 25.4 6.1 31 10-40 28-58 (161)
282 1om2_A Protein (mitochondrial 50.3 9.7 0.00033 25.8 2.3 29 196-224 24-52 (95)
283 1wfd_A Hypothetical protein 15 49.9 46 0.0016 22.3 5.7 15 258-272 40-54 (93)
284 3re2_A Predicted protein; meni 49.6 64 0.0022 27.8 7.6 78 141-220 239-324 (472)
285 2w2u_A Hypothetical P60 katani 47.7 21 0.00071 23.5 3.6 15 256-270 16-30 (83)
286 2cpt_A SKD1 protein, vacuolar 47.4 71 0.0024 22.4 8.9 48 74-139 14-61 (117)
287 2rpa_A Katanin P60 ATPase-cont 47.3 18 0.0006 23.6 3.1 27 278-304 15-41 (78)
288 3t5x_A PCI domain-containing p 45.4 20 0.00067 28.2 3.8 34 193-226 15-48 (203)
289 1wy6_A Hypothetical protein ST 45.2 86 0.0029 23.1 6.7 47 174-221 108-154 (172)
290 1o9d_A 14-3-3-like protein C; 44.8 1.3E+02 0.0043 24.6 10.9 42 96-147 11-55 (260)
291 2v6y_A AAA family ATPase, P60 43.1 27 0.00091 22.9 3.6 14 257-270 9-22 (83)
292 3uzd_A 14-3-3 protein gamma; s 42.6 1.3E+02 0.0046 24.2 10.0 42 96-147 7-49 (248)
293 2br9_A 14-3-3E, 14-3-3 protein 42.5 1.3E+02 0.0045 24.1 11.2 42 96-147 8-50 (234)
294 3t5x_A PCI domain-containing p 41.7 20 0.00069 28.1 3.3 33 275-307 14-46 (203)
295 1om2_A Protein (mitochondrial 41.6 32 0.0011 23.2 3.8 29 279-307 24-52 (95)
296 2dl1_A Spartin; SPG20, MIT, st 41.5 34 0.0012 24.1 4.0 48 70-135 14-61 (116)
297 2rpa_A Katanin P60 ATPase-cont 40.1 27 0.00091 22.7 3.1 27 195-221 15-41 (78)
298 4abx_A DNA repair protein RECN 39.8 59 0.002 24.6 5.7 51 256-307 72-122 (175)
299 2npm_A 14-3-3 domain containin 38.5 1.6E+02 0.0055 24.0 10.3 48 256-303 172-226 (260)
300 3u84_A Menin; MLL, JUND, ledgf 36.7 1.3E+02 0.0043 26.6 7.5 78 141-220 261-346 (550)
301 1wy6_A Hypothetical protein ST 35.8 1.3E+02 0.0043 22.3 6.3 49 255-304 106-154 (172)
302 4a5x_A MITD1, MIT domain-conta 35.7 41 0.0014 22.2 3.6 26 286-311 27-59 (86)
303 3lpz_A GET4 (YOR164C homolog); 35.0 2.1E+02 0.0072 24.3 21.7 33 255-288 262-295 (336)
304 3iqu_A 14-3-3 protein sigma; s 33.0 1.9E+02 0.0065 23.2 17.3 47 13-59 7-56 (236)
305 3iqu_A 14-3-3 protein sigma; s 32.2 1.9E+02 0.0067 23.1 12.3 42 96-147 11-53 (236)
306 3ubw_A 14-3-3E, 14-3-3 protein 31.8 2.1E+02 0.0071 23.3 17.9 47 13-59 30-79 (261)
307 3lpz_A GET4 (YOR164C homolog); 31.1 2.4E+02 0.0084 23.9 17.3 31 9-39 7-40 (336)
308 3eab_A Spastin; spastin, MIT, 30.5 25 0.00086 23.4 1.8 53 68-135 6-58 (89)
309 3mkr_B Coatomer subunit alpha; 30.4 2.5E+02 0.0084 23.7 12.0 35 284-321 207-241 (320)
310 4gq4_A Menin; tumor suppressor 29.2 2.1E+02 0.0072 25.3 7.7 46 174-220 281-331 (489)
311 4ady_A RPN2, 26S proteasome re 29.1 4.3E+02 0.015 26.1 11.0 226 24-307 384-627 (963)
312 3uzd_A 14-3-3 protein gamma; s 28.9 2.3E+02 0.0078 22.9 19.3 46 14-59 4-52 (248)
313 2br9_A 14-3-3E, 14-3-3 protein 28.3 2.3E+02 0.0078 22.6 17.7 46 14-59 5-53 (234)
314 1o9d_A 14-3-3-like protein C; 28.1 2.4E+02 0.0083 22.9 17.3 46 14-59 8-58 (260)
315 3myv_A SUSD superfamily protei 26.5 1.5E+02 0.005 26.3 6.8 48 173-220 164-218 (454)
316 2a9u_A Ubiquitin carboxyl-term 25.9 67 0.0023 23.6 3.6 26 14-39 42-67 (144)
317 2cfu_A SDSA1; SDS-hydrolase, l 25.8 62 0.0021 30.5 4.4 38 73-110 463-500 (658)
318 3lew_A SUSD-like carbohydrate 24.5 1.3E+02 0.0045 27.0 6.1 48 173-220 174-231 (495)
319 1qsa_A Protein (soluble lytic 24.5 4.3E+02 0.015 24.5 17.1 48 172-220 300-347 (618)
320 4gq4_A Menin; tumor suppressor 24.1 2E+02 0.007 25.3 6.7 27 276-302 304-330 (489)
321 3lew_A SUSD-like carbohydrate 23.7 1.3E+02 0.0044 27.0 6.0 28 276-303 204-231 (495)
322 3u84_A Menin; MLL, JUND, ledgf 23.6 2.1E+02 0.0073 25.2 6.7 28 276-303 319-346 (550)
323 3t5v_B Nuclear mRNA export pro 23.5 64 0.0022 28.8 3.7 63 142-225 181-254 (455)
324 3myv_A SUSD superfamily protei 23.5 1.7E+02 0.0059 25.8 6.7 48 256-303 164-218 (454)
325 2xze_A STAM-binding protein; h 23.1 79 0.0027 23.2 3.6 26 14-39 40-65 (146)
326 3kez_A Putative sugar binding 22.5 1.8E+02 0.0062 25.7 6.6 48 173-220 170-224 (461)
327 3mcx_A SUSD superfamily protei 22.4 1.9E+02 0.0067 25.6 6.9 48 173-220 176-230 (477)
328 3re2_A Predicted protein; meni 22.2 3.4E+02 0.012 23.5 7.6 27 277-303 298-324 (472)
329 2yhe_A SEC-alkyl sulfatase; hy 26.7 20 0.00069 33.9 0.0 51 14-64 461-513 (668)
330 3kez_A Putative sugar binding 20.7 1.7E+02 0.0058 25.9 6.0 48 256-303 170-224 (461)
331 2npm_A 14-3-3 domain containin 20.3 3.5E+02 0.012 22.0 18.2 47 13-59 27-79 (260)
332 2dl1_A Spartin; SPG20, MIT, st 20.0 1.4E+02 0.0047 21.0 4.1 44 255-307 18-61 (116)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-26 Score=208.01 Aligned_cols=274 Identities=13% Similarity=0.082 Sum_probs=172.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------H---------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------D--------- 68 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------~--------- 68 (323)
..|..+..++..|..+...|++++|+..++++ .+|+++.++..+|.++...|++..+.. +
T Consensus 62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34556666777777777777777777777776 477777777777777777776643210 0
Q ss_pred ---HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 69 ---ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 69 ---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
....+++++|+..++++++.+|+++.++..+|.++...|++. +|+..|+++++++|+++.++..+|.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW----------LAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 001244556666666666666666666666666666666555 6666777777777777777777777
Q ss_pred HHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++...+++......+...+.-. ...|++++|+..|+++++++|++ +.++..+|.+|...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 7766666533222221111100 12355666666666666666665 45666666666666666666
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+.+|+++++++|.+..... .++..+. ..|++++|+..|.+++.++|++ ..++..+|.+|...|++
T Consensus 291 ~~~~~~al~~~p~~~~~~~-----------~l~~~~~---~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 291 EDCYNTALRLCPTHADSLN-----------NLANIKR---EQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHH-----------HHHHHHH---TTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhCcccHHHHH-----------HHHHHHH---HcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH
Confidence 6666666666555433211 1222222 2577888888888888888877 67778888888888888
Q ss_pred HHHHHHHHHhhCCCChh
Q psy11738 292 EQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~ 308 (323)
++|+.+|+++++++|..
T Consensus 356 ~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 356 QEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 88888888888887663
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.7e-27 Score=209.51 Aligned_cols=234 Identities=16% Similarity=0.080 Sum_probs=167.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
...|..+...|++++|+..+.++ .+|+++.++..+|.+|...| ++++|+..++++++++|+++.+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG-------------EIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-------------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhcCCCcHHH
Confidence 33444444444444444444443 24444444444444444444 4567888888888888888888
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT-------- 167 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------- 167 (323)
+..+|.++...+++. +|+..|.+++.++|+++.++..+|.++...|++......+...+...
T Consensus 206 ~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 206 YINLGNVLKEARIFD----------RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHHHHHHHTTTCTT----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 888888888888887 66677777777777777777777777777666533222222111110
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 168 ------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 168 ------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
...|++++|+..|+++++++|++ +.++..+|.++...|++++|+.+|+++++++|.+.....
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------- 343 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS----------- 343 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-----------
Confidence 12367799999999999999998 699999999999999999999999999999998754321
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
.++..+.. .|++++|+..|++++.++|++ +.+++.+|.++..+|+
T Consensus 344 ~l~~~~~~---~g~~~~A~~~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 344 NLASVLQQ---QGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHT---TTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 12222222 789999999999999999998 8999999999998875
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=2.8e-27 Score=211.93 Aligned_cols=247 Identities=9% Similarity=0.005 Sum_probs=214.1
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....|.....+...+..+...|++++|+..++++ .+|++..+++.+|.++..+|+ .+++|+.++++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~------------d~~eAl~~~~~ 157 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------------DLHEEMNYITA 157 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc------------CHHHHHHHHHH
Confidence 3456677788888999999999999999999998 599999999999999999884 14779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+++++|+++.+|+++|.++..+|++. +|+.+|+++++++|++..+|+.+|.++..+|++
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~~~----------eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----------- 216 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRDPS----------QELEFIADILNQDAKNYHAWQHRQWVIQEFKLW----------- 216 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh-----------
Confidence 99999999999999999999999999 899999999999999999999999999999877
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhCCCCCCchhhhhhhcchhH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQA-----AYYLEMTKNYPVKQDKDQCFEITDMPW 238 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~ 238 (323)
++|+.+|+++++++|++ ..+|+++|.+|.. .|.+++| +.+|++++.++|++.....
T Consensus 217 ---------~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~-------- 278 (382)
T 2h6f_A 217 ---------DNELQYVDQLLKEDVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN-------- 278 (382)
T ss_dssp ---------TTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred ---------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH--------
Confidence 99999999999999998 6999999999999 5554788 5999999999999875432
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhc--------C-HHHHHHHHHHh-hCCCChh
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE--------N-YEQAAYYLEMT-KNYPAVQ 308 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g--------~-~~~A~~~~~~a-l~~~~~~ 308 (323)
. ++..+. ....+++++|++.+.++ +.+|++ ..++..||.+|..+| + +++|+.+|+++ ++++|..
T Consensus 279 -~--l~~ll~-~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 279 -Y--LKGILQ-DRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp -H--HHHHHT-TTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred -H--HHHHHH-ccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 1 111111 11123689999999998 999998 789999999999985 3 58999999999 9999975
Q ss_pred HH
Q psy11738 309 EA 310 (323)
Q Consensus 309 ~~ 310 (323)
..
T Consensus 353 ~~ 354 (382)
T 2h6f_A 353 KE 354 (382)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.1e-27 Score=213.18 Aligned_cols=238 Identities=13% Similarity=0.063 Sum_probs=205.0
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+.+...++..|..++..|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN-------------EQAAIVALQRCLEL 128 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhc
Confidence 345566899999999999999999999998 599999999999999999885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH----------hhHHHHhcCCcHHHH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML----------GMWCFEITDMPWYQR 158 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l----------g~~~~~~~~~~~~~~ 158 (323)
+|+++.++..+|.++...|++. +|+..|+++++++|+++.++..+ |.++...|
T Consensus 129 ~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 191 (365)
T 4eqf_A 129 QPNNLKALMALAVSYTNTSHQQ----------DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS------- 191 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCHHHHCC-------------------CCH-------
T ss_pred CCCCHHHHHHHHHHHHccccHH----------HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh-------
Confidence 9999999999999999999998 89999999999999988777666 55555554
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDM 236 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 236 (323)
++++|+.+|+++++++|+ + +.++..+|.+|...|++++|+.+|+++++++|.+.....
T Consensus 192 -------------~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------ 251 (365)
T 4eqf_A 192 -------------VLEGVKELYLEAAHQNGDMID-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN------ 251 (365)
T ss_dssp -------------HHHHHHHHHHHHHHHSCSSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred -------------hHHHHHHHHHHHHHhCcCccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 449999999999999999 6 689999999999999999999999999999998754321
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++.++|++ +.++..+|.+|..+|++++|+.+|++++++.|.
T Consensus 252 -----~l~~~~~~---~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 252 -----RLGATLAN---GDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp -----HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHH---cCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 12222222 689999999999999999998 799999999999999999999999999999876
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-27 Score=196.60 Aligned_cols=201 Identities=17% Similarity=0.147 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|.++++++.+|.++...|+ +++|+..++++++++|+++.++..+|.++...|++. +|
T Consensus 2 p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~----------~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-------------YDAALTLFERALKENPQDPEALYWLARTQLKLGLVN----------PA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HH
Confidence 7788999999999999885 467999999999999999999999999999999999 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHh-----------cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEI-----------TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
+..|+++++++|+++.+++.+|.++... |++ ++|+..|+++++++|++
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~--------------------~~A~~~~~~al~~~P~~- 117 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL--------------------EQALSVLKDAERVNPRY- 117 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH--------------------HHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH--------------------HHHHHHHHHHHHhCccc-
Confidence 9999999999999999999999999988 654 99999999999999998
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+.+++.+|.+|..+|++++|+.+|+++++++ .+.... . .++.++.. .|++++|+..|++++.++|
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~----------~la~~~~~---~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR-S----------ALAELYLS---MGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH-H----------HHHHHHHH---HTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH-H----------HHHHHHHH---cCCHHHHHHHHHHHHHhCC
Confidence 6999999999999999999999999999998 443321 1 12222222 6899999999999999999
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
++ +.++..+|.++..+|++++|+.+|+++-.
T Consensus 183 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 183 KD-LDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp TC-HHHHHHHHHHHTC----------------
T ss_pred CC-hHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 98 79999999999999999999999988743
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.9e-26 Score=201.36 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=227.6
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC---------cH---H----
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL---------SD---A---- 69 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~---------~~---~---- 69 (323)
...|.....++..|..++..|++++|+..++++ ..|+++.++..+|.+|...|++..+. .+ .
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 110 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH
Confidence 345666777888899999999999999988887 48888899999999998888765321 01 1
Q ss_pred --------------------HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHH
Q psy11738 70 --------------------DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA 129 (323)
Q Consensus 70 --------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 129 (323)
...+++++|+.+++++++.+|.++.++..+|.++...|++. +|...+.++
T Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~ 180 (359)
T 3ieg_A 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR----------KAISDLKAA 180 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH----------HHHHHHHHH
Confidence 12455789999999999999999999999999999999999 899999999
Q ss_pred HccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH------------H
Q psy11738 130 IELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL------------M 197 (323)
Q Consensus 130 l~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------~ 197 (323)
++++|+++.++..+|.++...|++ ++|+..|+++++++|++ ..++. .
T Consensus 181 ~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 181 SKLKSDNTEAFYKISTLYYQLGDH--------------------ELSLSEVRECLKLDQDH-KRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HTTCSCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCccc-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766 99999999999999997 45543 4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+|.++...|++++|+.++++++...|.+.......+ ..++..+.. .|++++|+..|.+++..+|++ +.+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~ 308 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK-------ERICHCFSK---DEKPVEAIRICSEVLQMEPDN-VNA 308 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH-------HHHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH-------HHHHHHHHH---ccCHHHHHHHHHHHHHhCccc-HHH
Confidence 488999999999999999999999998654322111 112222332 689999999999999999998 799
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHHhhhc
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAKSYLK 322 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~~ 322 (323)
++.+|.+|...|++++|+.+|+++++++|++ +....+.+++..++
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998874 44577888777664
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-26 Score=198.24 Aligned_cols=280 Identities=11% Similarity=0.033 Sum_probs=201.7
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..+++...++..|..++..|++++|+..++++ .+|.+..++..++.++...|++ ++|+.++++++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~~~ 83 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA-------------NELFYLSHKLV 83 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCH-------------HHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhH-------------HHHHHHHHHHH
Confidence 34555666788899999999999999988887 5888888888888888888854 55777777777
Q ss_pred cCCCCcHHHHHHHHHHHHHhh-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKA-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+.+|.++.++..+|.++...| ++. +|+.+|.++++++|+++.++..+|.++...|++......+..++.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 84 DLYPSNPVSWFAVGCYYLMVGHKNE----------HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHCTTSTHHHHHHHHHHHHSCSCHH----------HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777777777 666 677777777777777777777777777777765322222211111
Q ss_pred cC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 166 DT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 166 ~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.. ...|++++|+..|+++++++|++ +.++..+|.+|...|++++|+.++++++...|........
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 00 02456688888888888888887 5788888888888888888888888888775432211000
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH-H
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE-A 310 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~ 310 (323)
. ........++..+.. .|++++|+..|++++.++|++ ..++..+|.+|..+|++++|+.+|+++++++|++. +
T Consensus 233 ~--~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 233 D--KWEPLLNNLGHVCRK---LKKYAEALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp T--TCCHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred c--HHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 0 000111123333332 689999999999999999998 79999999999999999999999999999988644 3
Q ss_pred HHHHHHHH
Q psy11738 311 TKLLEKAK 318 (323)
Q Consensus 311 ~~~l~~~~ 318 (323)
...+..+.
T Consensus 307 ~~~l~~~~ 314 (330)
T 3hym_B 307 VTMLGHCI 314 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.1e-26 Score=198.59 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=186.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..+.++++++.+|..++..|+ +++|+.+++++++.+|.++.++..++.++...|++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~---------- 73 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCD-------------FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN---------- 73 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHH----------
T ss_pred hchhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHH----------
Confidence 367788899999999998885 567999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhc-CCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHh
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEIT-DMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~ 185 (323)
+|...+.++++.+|+++.++..+|.++...| ++......+..++... ...|++++|+..|+++++
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 6643333222221111 134678999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 265 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~ 265 (323)
+.|++ ..++..+|.+|...|++++|+.++++++..+|.+..... .++..+.. .|++++|+..|.+
T Consensus 154 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~ 218 (330)
T 3hym_B 154 LMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH-----------EVGVVAFQ---NGEWKTAEKWFLD 218 (330)
T ss_dssp HTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHH
T ss_pred hcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHH---cccHHHHHHHHHH
Confidence 98887 588888999999999999999999999998887653321 12222222 6899999999999
Q ss_pred HHhhC---------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 266 AEKQH---------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 266 a~~~~---------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++... |.. +.++..+|.+|...|++++|+.+|++++++.|.
T Consensus 219 a~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKW-EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHTTTSCSCTTTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhhccccccccHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 99986 555 578999999999999999999999999999776
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.1e-25 Score=200.98 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=222.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-----------------
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS----------------- 67 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~----------------- 67 (323)
....|.++..++..|..++..|++++|+..++++ .+|.++.+++.+|.+|...|++..+..
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4566778888889999999999999999999887 488889999999999998888654320
Q ss_pred ----HHHHHHHHHHHHHHHHhhccCCCCcH---HHHHHH------------HHHHHHhhcccchHHHHHhHHHHHHHHHH
Q psy11738 68 ----DADKKQLILSAYFLVYNALPQHEDHY---AIHKWL------------AVILNEKATLEGTKARIQQLETIKHHMNK 128 (323)
Q Consensus 68 ----~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 128 (323)
.-.+.+++++|+.+++++++++|.++ .++..+ |.++...|++. +|+..|++
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~ 168 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT----------AAIAFLDK 168 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----------HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHH
Confidence 01145678999999999999999998 776666 44466666666 89999999
Q ss_pred HHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHH
Q psy11738 129 AIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQN 194 (323)
Q Consensus 129 al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~ 194 (323)
+++++|.++.++..+|.++...|++......+...+... ...|++++|+..|+++++++|++ ...
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~ 247 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-KRC 247 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-HHH
Confidence 999999999999999999999998743322222211100 13578899999999999999987 566
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 195 VLML------------GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 262 (323)
Q Consensus 195 ~~~l------------g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~ 262 (323)
+..+ |.++...|++++|+.+|++++.++|.+....... ...++..+.. .|++++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------~~~l~~~~~~---~g~~~~A~~~ 317 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS-------KERICHCFSK---DEKPVEAIRV 317 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH-------HHHHHHHHHT---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH-------HHHHHHHHHH---CCCHHHHHHH
Confidence 6555 8889999999999999999998888764321111 1122222222 6899999999
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH-HHHHHHHHHh
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE-ATKLLEKAKS 319 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~l~~~~~ 319 (323)
+.+++.++|++ +.++..+|.+|...|++++|+.+|++++++.|++. ....+..++.
T Consensus 318 ~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 318 CSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 99999999998 79999999999999999999999999999988743 3455555443
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=6.5e-26 Score=201.38 Aligned_cols=235 Identities=14% Similarity=0.101 Sum_probs=207.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
...++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++++|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~ 130 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ-------------ELLAISALRRCLELKPD 130 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-------------HHHHHHHHHHHHhcCCC
Confidence 556789999999999999999999997 699999999999999999885 46799999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHH----------------HHhhHHHHhcCCcH
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLF----------------MLGMWCFEITDMPW 155 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~----------------~lg~~~~~~~~~~~ 155 (323)
++.++..+|.++...|++. +|++.+.++++++|++...+. .+|.++ ..|+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 196 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQR----------QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL--- 196 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH---
T ss_pred CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc---
Confidence 9999999999999999998 899999999999999988776 345444 5443
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+++|+..|+++++++|+ . +.++..+|.+|...|++++|+.+|++++.++|.+.....
T Consensus 197 -----------------~~~A~~~~~~a~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 255 (368)
T 1fch_A 197 -----------------FLEVKELFLAAVRLDPTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN--- 255 (368)
T ss_dssp -----------------HHHHHHHHHHHHHHSTTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred -----------------HHHHHHHHHHHHHhCcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH---
Confidence 49999999999999999 6 688999999999999999999999999999988754321
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.++..+.. .|++++|+..|.+++.++|+. +.++..+|.+|..+|++++|+.+|++++++.|..
T Consensus 256 --------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 256 --------KLGATLAN---GNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp --------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 12222222 689999999999999999998 7999999999999999999999999999997765
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=9.3e-25 Score=192.48 Aligned_cols=259 Identities=11% Similarity=0.049 Sum_probs=217.9
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HH
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DA 69 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~ 69 (323)
+++.++..|..++..|++++|+..++++ .+|.++.+++.+|.+|...|++..+.. .-
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677899999999999999999999997 599999999999999999998764320 01
Q ss_pred HHHHHHHHHHHHHHhhccCCC---CcHHHHHHH------------HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC
Q psy11738 70 DKKQLILSAYFLVYNALPQHE---DHYAIHKWL------------AVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 134 (323)
...+++++|+..++++++++| +++.++..+ |.++...|++. +|++.++++++.+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT----------AAITFLDKILEVCV 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCC
Confidence 256779999999999999999 999998887 56777777777 89999999999999
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
+++.++..+|.++...|++ ++|+..|+++++++|++ +.++..+|.+|...|++++|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEP--------------------RKAISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998765 99999999999999998 69999999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchh--HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh----hhhHHHHHHHHHh
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMP--WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS----QNVLMLGKTYMRL 288 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~----~~~~~lg~~y~~~ 288 (323)
+++++..+|.+...... +..+. ......+..++. .|++++|+..|.+++...|++ + ..+..+|.+|...
T Consensus 211 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAH-YKQVKKLNKLIESAEELIR---DGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHCTTCHHHHHH-HHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCccchHHHHH-HHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHc
Confidence 99999999988654321 00000 001112333333 689999999999999999987 4 3466799999999
Q ss_pred cCHHHHHHHHHHhhCCCCh
Q psy11738 289 ENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 289 g~~~~A~~~~~~al~~~~~ 307 (323)
|++++|+.+|+++++++|.
T Consensus 286 ~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999886
No 12
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=3.4e-26 Score=194.83 Aligned_cols=248 Identities=12% Similarity=0.051 Sum_probs=203.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+.++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++ .|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~-~~~ 68 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-------------YDLAQKDIETYFS-KVN 68 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-------------HHHHHHHHHHHHT-TSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHh-ccC
Confidence 345788999999999999999999997 699999999999999999885 4679999999999 555
Q ss_pred cHHH----HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 92 HYAI----HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 92 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++.. +..+|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------------- 124 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDS----------LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF-------------- 124 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH--------------
T ss_pred chhHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH--------------
Confidence 5444 899999999999998 899999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.+|+++++++|++ +.+++.+|......+++++|+.+|+++++++|.+..... . ++...
T Consensus 125 ------~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~---------~--~~~~~ 186 (272)
T 3u4t_A 125 ------PLAIQYMEKQIRPTTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL---------W--RARAN 186 (272)
T ss_dssp ------HHHHHHHGGGCCSSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH---------H--HHHHH
T ss_pred ------HHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH---------H--HHHHH
Confidence 99999999999999998 699999995555566999999999999999998754322 1 11112
Q ss_pred hccCCCCcHHHHHHHHHHHHhhC---Ccc----hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQH---PLF----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKA 317 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~---p~~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~ 317 (323)
........+++|+..|++++.+. |+. ...++..+|.+|..+|++++|+.+|+++++++|++.. .+.+..+
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 21112233788999999999886 441 1257889999999999999999999999999887543 4555443
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=3.6e-25 Score=192.98 Aligned_cols=237 Identities=16% Similarity=0.094 Sum_probs=204.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
.....++..|..++..|++++|+..++++ .+|+++.++..+|.++...|+ +++|+.+++++++++
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK-------------DGLAIIALNHARMLD 85 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcC
Confidence 45667899999999999999999999997 599999999999999999885 467999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH--------------hh-HHHHhcCCc
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML--------------GM-WCFEITDMP 154 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l--------------g~-~~~~~~~~~ 154 (323)
|.++.++..+|.++...|++. +|.+.+.++++.+|.+...+..+ |. ++...
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNAN----------AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP---- 151 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTSTTTTTC--------------------CCTTSH----
T ss_pred cCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc----
Confidence 999999999999999999998 89999999999999999888777 43 33333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+++++|+..|+++++.+|++ ..++..+|.+|...|++++|+.++++++..+|.+.....
T Consensus 152 ----------------~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 210 (327)
T 3cv0_A 152 ----------------NEYRECRTLLHAALEMNPND-AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN---- 210 (327)
T ss_dssp ----------------HHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred ----------------ccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH----
Confidence 34599999999999999997 699999999999999999999999999999988754321
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++..+|+. ..++..+|.+|...|++++|+.+|++++++.|.
T Consensus 211 -------~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 211 -------KLGATLAN---GNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp -------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHH---cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 12222222 689999999999999999998 789999999999999999999999999999777
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-25 Score=185.74 Aligned_cols=226 Identities=13% Similarity=0.155 Sum_probs=197.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
..+..++..|..++..|++++|+..++++ .. .++.+++.+|.+|..+|+ +++|+.+++++++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-------------YETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHhC
Confidence 45678899999999999999999999987 36 889999999999999885 467999999999999
Q ss_pred CCc-------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 90 EDH-------YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 90 p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
|++ +.++..+|.++...|++. +|+.+|+++++++|. +.++...+++
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~--------~~~~~~~~~~--------- 121 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLK----------KTIEYYQKSLTEHRT--------ADILTKLRNA--------- 121 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCCC--------HHHHHHHHHH---------
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhcCch--------hHHHHHHhHH---------
Confidence 987 789999999999999998 899999999999987 2334444433
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
++|+..+++++..+|+. +.++..+|.++...|++++|+.+|++++..+|.+..... .
T Consensus 122 -----------~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~ 178 (258)
T 3uq3_A 122 -----------EKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-----------N 178 (258)
T ss_dssp -----------HHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------H
T ss_pred -----------HHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH-----------H
Confidence 99999999999999997 699999999999999999999999999999998753211 1
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++..+.. .|++++|+..|.+++..+|++ +.++..+|.+|..+|++++|+.+|++++++.
T Consensus 179 l~~~~~~---~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 179 RAAALAK---LMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 2222222 689999999999999999998 7999999999999999999999999999998
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=3.6e-25 Score=183.23 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=162.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|+++..++..|..++..|++++|+..++++ .+|+++++++.+|.++...|+ +++|+..+++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-------------VNPALENGKTLVAR 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh
Confidence 667778899999999999999999999997 699999999999999999885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHh-----------hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHH
Q psy11738 89 HEDHYAIHKWLAVILNEK-----------ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~ 157 (323)
+|+++.++..+|.++... |++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~---- 134 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE----------QALSVLKDAERVNPRYAPLHLQRGLVYALLGER---- 134 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----
Confidence 999999999999999999 7777 899999999999999999999999999998765
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+..|+++++++ ++ +.+++++|.+|..+|++++|+.+|++++.++|.+.....
T Consensus 135 ----------------~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~------- 189 (217)
T 2pl2_A 135 ----------------DKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV------- 189 (217)
T ss_dssp ----------------HHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH-------
T ss_pred ----------------HHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Confidence 99999999999999 76 799999999999999999999999999999998865422
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAE 267 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~ 267 (323)
.++..+. ..|++++|+..|+++.
T Consensus 190 ----~la~~~~---~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 190 ----RYASALL---LKGKAEEAARAAALEH 212 (217)
T ss_dssp ----HHHHHHT---C---------------
T ss_pred ----HHHHHHH---HccCHHHHHHHHHHHh
Confidence 1222222 3689999999998764
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.9e-24 Score=200.20 Aligned_cols=267 Identities=13% Similarity=0.177 Sum_probs=217.9
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
..+..++..|..++..|++++|+..++++ .+|+++.++..+|.+|..+|+ +++|+..++++++++
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-------------LEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcC
Confidence 35677899999999999999999999998 599999999999999999885 467999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHH-----------------------------------------------------
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARI----------------------------------------------------- 116 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 116 (323)
|+++.++..+|.++...|++..+....
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 999999999999999999877554321
Q ss_pred ----------------------------------------------HhHHHHHHHHHHHHccCCCChhH-------HHHH
Q psy11738 117 ----------------------------------------------QQLETIKHHMNKAIELKPDDSTT-------LFML 143 (323)
Q Consensus 117 ----------------------------------------------~~~~~a~~~~~~al~l~p~~~~~-------~~~l 143 (323)
+...+|+..|+++++.+|+++.. +..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 25668888999999999999764 6666
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhc-------------CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFD-------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~ 210 (323)
|.++...|++......+...+.. -...|++++|+..|+++++++|++ +.++..+|.+|...|++++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 67777766654332222221111 135688999999999999999997 6999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 211 AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 211 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
|+.+|++++.++|.+..... .++..++. .|++++|+..|.+++..+|++ +.++..+|.+|...|+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~-----------~la~~~~~---~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYI-----------QLACLLYK---QGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCC
Confidence 99999999999998764322 12222222 689999999999999999998 7899999999999999
Q ss_pred HHHHHHHHHHhhCCCCh
Q psy11738 291 YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 291 ~~~A~~~~~~al~~~~~ 307 (323)
+++|+.+|++++++.|.
T Consensus 394 ~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999999988765
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-24 Score=198.80 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=178.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
.+|.+++.++.+|.+|...|++..+.. .....+++++|+.+++++++++|+++.++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 588999999999999999987653210 01134557777777777777777777777777
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
|.++...|++. +|+..|+++++++|+++ .++..++.++...+.+. .+.... ..|++++|
T Consensus 101 ~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~---~~~~~~~A 162 (450)
T 2y4t_A 101 GHLLLKQGKLD----------EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS-----QALNAF---GSGDYTAA 162 (450)
T ss_dssp HHHHHHTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHTCHHHH
T ss_pred HHHHHHcCCHH----------HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH-----HHHHHH---HcCCHHHH
Confidence 77777777777 89999999999999998 88777755422221110 000000 01456999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcH
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSY 256 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (323)
+..|+++++++|++ ..++..+|.+|...|++++|+.+|++++..+|.+..... .++..+.. .|++
T Consensus 163 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~g~~ 227 (450)
T 2y4t_A 163 IAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY-----------KISTLYYQ---LGDH 227 (450)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH-----------HHHHHHHH---TTCH
T ss_pred HHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCCH
Confidence 99999999999998 699999999999999999999999999999888754321 12222222 6899
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHH------------HHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLML------------GKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~l------------g~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++|+..|.+++.++|+. ...+..+ |.++...|++++|+.+|++++++.|.+
T Consensus 228 ~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDH-KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999998 6666555 999999999999999999999998773
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.3e-24 Score=194.58 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHhHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 120 (323)
+|++.+++..+|.++...|++ ++|+..++++++++|++..++..+|.++..+|+ +.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~-------------~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~---------- 149 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERS-------------ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH---------- 149 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCC-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH----------
T ss_pred ChhhHHHHHHHHHHHHHCCCh-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHH----------
Confidence 667789999999999888754 669999999999999999999999999999997 88
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+.+|+++++++|+++.+|+.+|.++..+|++ ++|+.+|+++++++|++ ..+|+++|.
T Consensus 150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~--------------------~eAl~~~~kal~ldP~~-~~a~~~lg~ 208 (382)
T 2h6f_A 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--------------------SQELEFIADILNQDAKN-YHAWQHRQW 208 (382)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC--------------------TTHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCccC-HHHHHHHHH
Confidence 899999999999999999999999999999877 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH-----HHHHHHHHhhCCcchh
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA-----LKYFLEAEKQHPLFYS 275 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A-----l~~~~~a~~~~p~~~~ 275 (323)
++..+|++++|+.+|++++.++|.+..... .+..+ +... .+.+++| +.+|.+++.++|++ .
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~---------~lg~~--l~~l--~~~~~eA~~~~el~~~~~Al~l~P~~-~ 274 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWN---------QRYFV--ISNT--TGYNDRAVLEREVQYTLEMIKLVPHN-E 274 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHH---------HHHHH--HHHT--TCSCSHHHHHHHHHHHHHHHHHSTTC-H
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHH---------HHHHH--HHHh--cCcchHHHHHHHHHHHHHHHHHCCCC-H
Confidence 999999999999999999999999876532 22222 1110 1233555 69999999999999 7
Q ss_pred hhhHHHHHHHHHhc--CHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLE--NYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~ 308 (323)
.+|+++|.++...| ++++|++.+.++ +.+|++
T Consensus 275 ~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 275 SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp HHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred HHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 99999999999988 699999999998 777763
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.1e-24 Score=200.82 Aligned_cols=263 Identities=12% Similarity=0.010 Sum_probs=188.7
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------c---------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------S--------- 67 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~--------- 67 (323)
+++...+...+..+...|++++|+..++++ ..|.+..++..++.+|...|+..... .
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 466777888888899999999999888887 47777777777888877777542210 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
...+.|++++|+.+|+++++++|.++.++..++.++...|+++ +|++.|+++++..|++..++..+|.++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD----------QAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 0012233455566666666556655555555666665555555 556666666666666666666666666
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC---
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK--- 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--- 224 (323)
...| ++++|+..|+++++++|++ +.++..+|.+|.+.|++++|+.+|+++++..|.
T Consensus 452 ~~~g--------------------~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 452 MQLG--------------------NILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHT--------------------CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHcC--------------------CHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 5554 4599999999999999997 688999999999999999999999999887432
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.... .....++..+.. .|++++|+..|++++..+|++ +.++..+|.+|...|++++|..+|++++++
T Consensus 511 ~p~~~~-------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 511 NEKPWA-------ATWANLGHAYRK---LKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CSGGGH-------HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHH-------HHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 221100 011122222222 689999999999999999998 799999999999999999999999999999
Q ss_pred CChhHH-HHHHH
Q psy11738 305 PAVQEA-TKLLE 315 (323)
Q Consensus 305 ~~~~~~-~~~l~ 315 (323)
+|++.. ...|.
T Consensus 580 ~p~~~~~~~~l~ 591 (597)
T 2xpi_A 580 SPNEIMASDLLK 591 (597)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 887643 34443
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=4.2e-24 Score=171.63 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.+|+.+|.++...|+++ +|+++|+++++++|+++.++..+|.++...|++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~------------------ 55 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFD----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------------ 55 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH------------------
Confidence 4445555555555555555 555555555555555555555555555554433
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|+..+.+++..+|++ +.++..+|.++...++++.|+..+++++.++|.+..... .++..+..
T Consensus 56 --~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~-----------~lg~~~~~-- 119 (184)
T 3vtx_A 56 --NDAIESLKKFVVLDTTS-AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY-----------KLGLVYDS-- 119 (184)
T ss_dssp --HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH--
T ss_pred --HHHHHHHHHHHhcCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH-----------HHHHHHHH--
Confidence 55555555555555554 355555555555555555555555555555555432211 01111111
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.|++++|+..|+++++++|++ +.+++.+|.+|..+|++++|+.+|++|++++|++
T Consensus 120 -~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 120 -MGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred -hCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 455666666666667778877 7889999999999999999999999999998864
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.5e-24 Score=199.63 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=208.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
..+...|..+...|++++|+..++++ .+|. +.+++.+|.+|...|++ ++|+.+++++++.+|++
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~~~~~~~ 309 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS-------------QEFFKFFQKAVDLNPEY 309 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC-------------HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH-------------HHHHHHHHHHhccCCCC
Confidence 34677888888999999999999997 4777 89999999999887755 66999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+.++..+|.++...|++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 310 ~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~------------------- 360 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYK----------NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF------------------- 360 (537)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------------------
Confidence 999999999999999998 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc--
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT-- 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 250 (323)
++|+..|+++++++|++ +.++..+|.++...|++++|+.+|++++.++|.+..... .++. ++ ..+..+...
T Consensus 361 -~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~--~~--~~a~~~~~~~~ 433 (537)
T 3fp2_A 361 -TESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV-GIGP--LI--GKATILARQSS 433 (537)
T ss_dssp -HHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS-TTHH--HH--HHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH-HHHH--HH--HHHHHHHHHhh
Confidence 99999999999999998 699999999999999999999999999999877654322 1100 01 111111110
Q ss_pred -----CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 251 -----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 251 -----~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
...|++++|+..|.+++..+|++ +.++..+|.+|..+|++++|+.+|++++++.|....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRS-EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 11188999999999999999998 799999999999999999999999999999887443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.1e-24 Score=188.13 Aligned_cols=241 Identities=12% Similarity=-0.009 Sum_probs=205.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|......+..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 50 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~~ 116 (327)
T 3cv0_A 50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN-------------ANAALASLRAWL 116 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 34566777888899999999999999999987 589999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHH--------------HH-HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 87 PQHEDHYAIHKWL--------------AV-ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 87 ~~~p~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+.+|.+...+..+ +. ++...|++. +|+..++++++.+|+++.++..+|.++...|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 117 LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR----------ECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HTSTTTTTC--------------------CCTTSHHHHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999887776 44 466666666 8999999999999999999999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
++ ++|+..|+++++++|++ +.++..+|.+|...|++++|+.+|++++..+|.+.....
T Consensus 187 ~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 244 (327)
T 3cv0_A 187 NY--------------------DSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY- 244 (327)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred cH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Confidence 65 99999999999999998 699999999999999999999999999999988654321
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------------chhhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------------FYSQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------------~~~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.++..+.. .|++++|+..|++++.+.|+ . ...+..+|.+|..+|++++|..+++
T Consensus 245 ----------~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 245 ----------NMAVSYSN---MSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT-RSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp ----------HHHHHHHH---TTCHHHHHHHHHHHHHHHTTSCC-----CCTHH-HHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ----------HHHHHHHH---hccHHHHHHHHHHHHHhCCccccccccchhhcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12222222 68999999999999999998 6 7889999999999999999999999
Q ss_pred HhhCCCChh
Q psy11738 300 MTKNYPAVQ 308 (323)
Q Consensus 300 ~al~~~~~~ 308 (323)
++++..|+.
T Consensus 311 ~~l~~~~~~ 319 (327)
T 3cv0_A 311 QNVEPFAKE 319 (327)
T ss_dssp CCSHHHHHH
T ss_pred HHHHhcchh
Confidence 988775543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=1.5e-24 Score=192.92 Aligned_cols=239 Identities=14% Similarity=0.004 Sum_probs=200.0
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...|.....+...|..+...|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.+++++
T Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~a 159 (365)
T 4eqf_A 93 LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH-------------QQDACEALKNW 159 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc-------------HHHHHHHHHHH
Confidence 345667788899999999999999999999997 589999999999999999885 46799999999
Q ss_pred ccCCCCcHHHHHHH----------HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHHHHhcCC
Q psy11738 86 LPQHEDHYAIHKWL----------AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 86 l~~~p~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~ 153 (323)
++++|+++.++..+ |.++...|++. +|+.+|+++++++|+ ++.++..+|.++...|++
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE----------GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHH----------HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH----------HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 99999988887766 77777777777 899999999999999 999999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
++|+.+|+++++++|++ +.++..+|.+|...|++++|+.+|++++.++|.+.....
T Consensus 230 --------------------~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--- 285 (365)
T 4eqf_A 230 --------------------NRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY--- 285 (365)
T ss_dssp --------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred --------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH---
Confidence 99999999999999998 699999999999999999999999999999998754322
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----------hhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----------SQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----------~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
.++..+.. .|++++|+..|++++.++|+.. ..++..+|.++..+|+.+.|..+..+.+
T Consensus 286 --------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 286 --------NLGISCIN---LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp --------HHHHHHHH---HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred --------HHHHHHHH---CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 12222222 5889999999999999998721 4678999999999999999999887765
Q ss_pred CC
Q psy11738 303 NY 304 (323)
Q Consensus 303 ~~ 304 (323)
+.
T Consensus 355 ~~ 356 (365)
T 4eqf_A 355 DV 356 (365)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=194.56 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=216.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|.....++..|..++..|++++|+..++++ ..|. +.++..+|.+|...|++.. |+.++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~-------------A~~~~~~~~~~ 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTE-------------YYNYFDKALKL 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTT-------------GGGHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHH-------------HHHHHHHHhhc
Confidence 666777888999999999999999999987 4777 9999999999999998765 89999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------- 354 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYD----------QAGKDFDKAKELDPENIFPYIQLACLAYRENKF--------------- 354 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTT----------HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH---------------
T ss_pred CcCCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH---------------
Confidence 9999999999999999999999 899999999999999999999999999887655
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+++++.+|++ +.++..+|.+|...|++++|+.+|++++..+|.+...... . .....++..++
T Consensus 355 -----~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~--~~~~~l~~~~~ 423 (514)
T 2gw1_A 355 -----DDCETLFSEAKRKFPEA-PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG---I--APLVGKATLLT 423 (514)
T ss_dssp -----HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC---S--HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH---H--HHHHHHHHHHh
Confidence 99999999999999998 6999999999999999999999999999998877542110 0 01112222222
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.....|++++|+..|.+++..+|++ +.++..+|.+|...|++++|+.+|++++++.|.+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 2001589999999999999999998 799999999999999999999999999999887544
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=197.50 Aligned_cols=264 Identities=15% Similarity=0.096 Sum_probs=180.8
Q ss_pred hHHHHHHhhhHHHh--hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------------HH----
Q psy11738 13 VSEEFLKKSDDLFE--EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------------DA---- 69 (323)
Q Consensus 13 ~~~~~~~~a~~~~~--~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------------~~---- 69 (323)
.+......|..+.. .++|++|+..++++ .+|++++++..++.++..++....... ..
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 34445555655554 56899999999998 599999999999999887766543210 00
Q ss_pred ---------HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH
Q psy11738 70 ---------DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL 140 (323)
Q Consensus 70 ---------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~ 140 (323)
...+.+++|+.++++++.++|.++.++..+|.++...|++. +|+..|.++++++|+++.++
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD----------KAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH----------HHHHHHHHHHHhCCChHHHH
Confidence 01345667888888888888888888888888888888877 88888999999999999888
Q ss_pred HHHhhHHHHhcCCc---------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 141 FMLGMWCFEITDMP---------WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 141 ~~lg~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
+.+|.+|...+... ...... ..+++|+.+|+++++++|.+ ..++..+|.+|...|++++|
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLL----------ELIGHAVAHLKKADEANDNL-FRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHH----------HHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhccHHHH
Confidence 88888876543110 000001 12489999999999999997 69999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC---------------------
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--------------------- 270 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~--------------------- 270 (323)
+.+|+++++++|.+........ .++.... ...+++++|+.+|.+++.++
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHL--------RYGNFQL--YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHH--------HHHHHHH--HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHH--------HHHHHHH--HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999877543211000 0111111 12578999999998888765
Q ss_pred ---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 271 ---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 271 ---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
|++ +.++..||.+|..+|++++|+++|++|+++.|..
T Consensus 424 ~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 424 SKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHCC-C-TTHHHHHHHHHHHHHHCC----------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 555 5789999999999999999999999999997653
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=4.5e-24 Score=189.48 Aligned_cols=238 Identities=15% Similarity=0.028 Sum_probs=204.9
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...|.....++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+..++++
T Consensus 92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~ 158 (368)
T 1fch_A 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL-------------QRQACEILRDW 158 (368)
T ss_dssp HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Confidence 345667778889999999999999999999997 589999999999999999885 46799999999
Q ss_pred ccCCCCcHHHHH----------------HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHH
Q psy11738 86 LPQHEDHYAIHK----------------WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWC 147 (323)
Q Consensus 86 l~~~p~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~ 147 (323)
+.++|.+...+. .++.++ ..|++. +|+..|.++++++|+ ++.++..+|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFL----------EVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHTSTTTGGGCC---------------CTTHHHH-HHHHHH----------HHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHH----------HHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 999999988765 355555 667776 899999999999999 899999999999
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...|++ ++|+.+|+++++++|++ +.++..+|.+|...|++++|+.+|++++.++|.+..
T Consensus 228 ~~~g~~--------------------~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 228 NLSGEY--------------------DKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp HHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCH--------------------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 998765 99999999999999998 699999999999999999999999999999987754
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc----------hhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF----------YSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~----------~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
... .++..+.. .|++++|+..|.+++.+.|+. ...++..+|.+|..+|++++|..+
T Consensus 287 ~~~-----------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 287 SRY-----------NLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHH-----------HHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHH-----------HHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 321 12222222 689999999999999998875 147899999999999999999999
Q ss_pred HHHhhCC
Q psy11738 298 LEMTKNY 304 (323)
Q Consensus 298 ~~~al~~ 304 (323)
+.++++.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 9887654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=4.9e-23 Score=189.20 Aligned_cols=261 Identities=14% Similarity=0.105 Sum_probs=196.3
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+..+..+...|..++..|++++|+..++++ ..+..++++..+|.++...| .+++++|+
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~y~~A~ 158 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-----------GNQNERAK 158 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-----------TTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-----------cccHHHHH
Confidence 4445556677888899999999998887764 14567888888888887776 23789999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.+|+++++++|++++++..+|.++..++.+... .+|++.++++++++|+++.++..+|..+...+..
T Consensus 159 ~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~-------~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~------ 225 (472)
T 4g1t_A 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS-------QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE------ 225 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC-------CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhh------
Confidence 999999999999999999999887766554311 1678899999999999999999999887766532
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
.+++++|+++|++++.++|++ ..++..+|.+|...|++++|+..|+++++.+|++..... .+ +..
T Consensus 226 ----------~~~~~~a~~~~~~al~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l---g~~ 290 (472)
T 4g1t_A 226 ----------GEEEGEGEKLVEEALEKAPGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC-QI---GCC 290 (472)
T ss_dssp --------------CHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-HH---HHH
T ss_pred ----------hhHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH-HH---HHH
Confidence 245689999999999999998 699999999999999999999999999999999865432 11 111
Q ss_pred HHHHHHHhhcc---------CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 240 QRKIANAIFDT---------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 240 ~~~~a~~~~~~---------~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
........... ...+.+++|+..|.+++.++|.+ ..++..+|.+|...|++++|+.+|++++++.|.+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 11000000000 00134677888888888888877 677888888888888888888888888877665443
No 28
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.8e-23 Score=193.62 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=181.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HHHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DADKKQLI 75 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~~~~~~~ 75 (323)
...+..+...|++++|+..++++ ..|.++.++..++.+|...|++..+.. ...+.+++
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 44588888999999999999998 457899999999999999987543110 00133444
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..++++++.+|.++.++..+|.+|...|+++ +|.+.|+++++++|.+..++..+|.++...|+
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 422 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS----------EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--- 422 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Confidence 55555555555555555555555555555555555 56666666666666666666666666666554
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
+++|+..|+++++..|++ ..++..+|.+|...|++++|+.+|++++..+|.+.....
T Consensus 423 -----------------~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----- 479 (597)
T 2xpi_A 423 -----------------HDQAISAYTTAARLFQGT-HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN----- 479 (597)
T ss_dssp -----------------HHHHHHHHHHHHHTTTTC-SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH-----
T ss_pred -----------------HHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Confidence 499999999999998887 688888999999999999999999999888887653311
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++.. +|+....++..+|.+|...|++++|+.+|++++++.|.
T Consensus 480 ------~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 480 ------ELGVVAFN---KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp ------HHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ------HHHHHHHH---hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 12222222 68999999999999998 66643578999999999999999999999999999775
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.9e-23 Score=166.70 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=159.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+++.-++..|..++..|+|++|+..++++ .+|++++++..+|.+|...|+ +++|+..+.+++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------------~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-------------PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcC
Confidence 45566789999999999999999999998 599999999999999999885 466999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|+++.++..+|.++...+++. .+...+.++++++|+++.++..+|.++...|++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~---------------- 123 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQ----------AAIDALQRAIALNTVYADAYYKLGLVYDSMGEH---------------- 123 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred chhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc----------------
Confidence 999999999999999999998 888999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+..|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 124 ----~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 124 ----DKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp ----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred ----hhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999998 79999999999999999999999999999998753
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=2.1e-23 Score=177.47 Aligned_cols=229 Identities=15% Similarity=0.091 Sum_probs=193.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS-E-----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~-~-----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.+..+...|++++|+..++++ . .|.++.+++.+|.+|...|+ +++|+.+++++++++|.++
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~al~~~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL-------------RALARNDFSQALAIRPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHcCCCcH
Confidence 344555679999999999987 2 35678899999999999885 4679999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.++..+|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++
T Consensus 78 ~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-------------------- 127 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-------------------- 127 (275)
T ss_dssp HHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCccccHHHHHHHHHHHHhccH--------------------
Confidence 99999999999999999 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+..|+++++++|++ ......++ ++...|++++|+.++++++...|.+..... ++...+ ..
T Consensus 128 ~~A~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~---~~ 190 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPND-PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN------------IVEFYL---GN 190 (275)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH------------HHHHHT---TS
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH------------HHHHHH---Hh
Confidence 99999999999999997 45555555 447779999999999999998887643211 111222 25
Q ss_pred CcHHHHHHHHHHHHhhCCcch---hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++.++|+..+.+++...|... ...++.+|.+|..+|++++|+.+|++++.++|++
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 678999999999998887421 4778999999999999999999999999998864
No 31
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.2e-22 Score=168.94 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=165.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
|.++.+++..|.++...|++. +|+..|.++++++| .+..+++.+|.++...|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~--------------- 58 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYA----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY--------------- 58 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH---------------
T ss_pred ccCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH---------------
Confidence 456789999999999999999 89999999999999 9999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+.+|+++++++|++ +.++..+|.+|..+|++++|+.+|+++++++|++..... .+......++....
T Consensus 59 -----~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 59 -----KEAADYFDIAIKKNYNL-ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEK----LYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----HHHHHHHHHHHHTTCSH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCcch-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH----HHHHHHHHHhHHHH
Confidence 99999999999999997 799999999999999999999999999999998863211 01111222333333
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCc--chhhhhHHHHHHHHHhcCH---------------------------HHHHHHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENY---------------------------EQAAYYLE 299 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~--~~~~~~~~lg~~y~~~g~~---------------------------~~A~~~~~ 299 (323)
. .|++++|+..|.+++.++|+ + +.+++.+|.+|...|+. ++|+.+|+
T Consensus 129 ~---~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 129 Q---AGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp H---TTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 68999999999999999999 8 79999999999999999 99999999
Q ss_pred HhhCCCChhH-HHHHHHHHHhhhc
Q psy11738 300 MTKNYPAVQE-ATKLLEKAKSYLK 322 (323)
Q Consensus 300 ~al~~~~~~~-~~~~l~~~~~~~~ 322 (323)
++++++|++. ...++.+++..++
T Consensus 205 ~a~~l~p~~~~~~~~l~~i~~~~k 228 (228)
T 4i17_A 205 EAVTLSPNRTEIKQMQDQVKAMIK 228 (228)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTTC-
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhC
Confidence 9999988754 4578888776553
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2e-23 Score=192.65 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=187.0
Q ss_pred cHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q psy11738 29 QFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEK 106 (323)
Q Consensus 29 ~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 106 (323)
++++|+..+... ..|.++.+++.+|.+|...|++. ++|+.+++++++++|+++.++..+|.++...
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS------------PEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCC------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccH------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 466777777765 48889999999999999888541 5599999999999999999999999999999
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
|++. +|+++|+++++++|+ +.++..+|.++...+.-. ..... +++++|+.+|++++++
T Consensus 151 g~~~----------~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~-~~~~~----------g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 151 GDVT----------SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS-GDEHS----------RHVMDSVRQAKLAVQM 208 (474)
T ss_dssp TCHH----------HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC-HHHHH----------HHHHHHHHHHHHHHHH
T ss_pred CCHH----------HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC-hhhhh----------hhHHHHHHHHHHHHHh
Confidence 9999 899999999999999 799999999998871000 00000 1339999999999999
Q ss_pred CCCchhHHHHHHHHHHHHc--------CCHHHHHHHHHHHhCCCC---CCchhhhhhhcchhHHHHHHHHHhhccCCCCc
Q psy11738 187 HPLFYSQNVLMLGKTYMRL--------ENYEQAAYYLEMTKNYPV---KQDKDQCFEITDMPWYQRKIANAIFDTLPTSS 255 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 255 (323)
+|++ ..+++.+|.+|... |++++|+.+|++++.++| .+..... .++..+.. .|+
T Consensus 209 ~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------~lg~~~~~---~g~ 273 (474)
T 4abn_A 209 DVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL-----------NRATLHKY---EES 273 (474)
T ss_dssp CTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH-----------HHHHHHHH---TTC
T ss_pred CCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH-----------HHHHHHHH---cCC
Confidence 9998 69999999999999 999999999999999998 5543211 22222222 689
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
+++|+..|.+++.++|++ ..++..+|.++..+|++++|+..+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998 799999999999999999999887654
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=5.2e-23 Score=171.86 Aligned_cols=207 Identities=18% Similarity=0.142 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.+..++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|+.
T Consensus 22 ~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~----------~A~~ 78 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD-------------YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE----------RALA 78 (243)
T ss_dssp ---------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHHHHhhC-------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH----------HHHH
Confidence 35566677777777664 456899999999999999999999999999999998 8999
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|+++++++|+++.++..+|.++...|++ ++|+..|+++++++|++ ..++..+|.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 79 FYDKALELDSSAATAYYGAGNVYVVKEMY--------------------KEAKDMFEKALRAGMEN-GDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHTCCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 99999999999999999999999988765 99999999999999997 6999999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.++++++..+|.+..... .++..++. .|++++|+..|.+++..+|+. +..+..+|.+
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 202 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARF-----------QFGMCLAN---EGMLDEALSQFAAVTEQDPGH-ADAFYNAGVT 202 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---HTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 99999999999999999887654321 12222222 578999999999999999998 7899999999
Q ss_pred HHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
|...|++++|..+|++++++.|++..
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHccCHHHHHHHHHHHHccCcchHH
Confidence 99999999999999999999887654
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2e-22 Score=169.52 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=187.1
Q ss_pred CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhH
Q psy11738 41 EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQL 119 (323)
Q Consensus 41 ~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (323)
.+|.+ +.+++.+|.++...|++.. |+.+++++++.+|.++.++..+|.++...|++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~-------------A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~--------- 88 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQ-------------AKVPLRKALEIDPSSADAHAALAVVFQTEMEPK--------- 88 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGG-------------GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH---------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHH-------------HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH---------
Confidence 45655 7889999999999987654 899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCCCchhHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLM 197 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~ 197 (323)
+|.+.|.++++++|.++.++..+|.++...|++ ++|+.+|+++++ ..|.+ ..++..
T Consensus 89 -~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~ 146 (252)
T 2ho1_A 89 -LADEEYRKALASDSRNARVLNNYGGFLYEQKRY--------------------EEAYQRLLEASQDTLYPER-SRVFEN 146 (252)
T ss_dssp -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHTTCTTCTTH-HHHHHH
T ss_pred -HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH--------------------HHHHHHHHHHHhCccCccc-HHHHHH
Confidence 899999999999999999999999999988765 999999999999 88886 689999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+|.+|...|++++|+.++++++..+|.+..... .++..+.. .|++++|+..|.+++...|+. ...
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~g~~~~A~~~~~~~~~~~~~~-~~~ 211 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL-----------EMADLLYK---EREYVPARQYYDLFAQGGGQN-ARS 211 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHTTSCCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCcCc-HHH
Confidence 999999999999999999999999987643221 22222222 689999999999999999988 788
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+..++.+|...|++++|..++++++++.|++...
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999998876543
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=4.8e-23 Score=172.05 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=170.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+..+..++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.+++++++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE-------------LERALAFYDKALEL 86 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHc
Confidence 344466788999999999999999999987 589999999999999998885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|.+.++++++++|.++.++..+|.++...|++
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 141 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYK----------EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP--------------- 141 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH---------------
T ss_pred CCcchHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH---------------
Confidence 9999999999999999999998 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|++++++.|++ ..++..+|.++...|++++|+.++++++..+|.+..... .++..+.
T Consensus 142 -----~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~ 204 (243)
T 2q7f_A 142 -----KLALPYLQRAVELNEND-TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY-----------NAGVTYA 204 (243)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-----------HHHHHHH
Confidence 99999999999999997 699999999999999999999999999999887654211 1222222
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhc
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g 289 (323)
. .|++++|+..|++++.++|++ ..++..++.+....|
T Consensus 205 ~---~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 205 Y---KENREKALEMLDKAIDIQPDH-MLALHAKKLLGHHHH 241 (243)
T ss_dssp H---TTCTTHHHHHHHHHHHHCTTC-HHHHHHHTC------
T ss_pred H---ccCHHHHHHHHHHHHccCcch-HHHHHHHHHHHhhcc
Confidence 2 688999999999999999998 788887777665444
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=3.4e-22 Score=166.09 Aligned_cols=211 Identities=9% Similarity=0.058 Sum_probs=174.9
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
++.++..++..|..++..|++++|+..++++ ..| .+..+++.+|.+|..+|+ +++|+.++++++
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~al 69 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-------------YKEAADYFDIAI 69 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-------------HHHHHHHHHHHH
Confidence 3445688999999999999999999999987 466 888999999999999885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-------hHHHHHhhHHHHhcCCcHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-------TTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-------~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+++|+++.++..+|.++..+|++. +|+..|+++++++|+++ .++..+|.++...|++
T Consensus 70 ~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~------ 133 (228)
T 4i17_A 70 KKNYNLANAYIGKSAAYRDMKNNQ----------EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI------ 133 (228)
T ss_dssp HTTCSHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HhCcchHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH------
Confidence 999999999999999999999999 89999999999999999 5578888887777654
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+.+|+++++++|+ + +.+++.+|.+|...|+ ..++++..+.+.+..... ..
T Consensus 134 --------------~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~-~~---- 188 (228)
T 4i17_A 134 --------------EKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYA-SE---- 188 (228)
T ss_dssp --------------HHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHH-HH----
T ss_pred --------------HHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHH-HH----
Confidence 9999999999999999 8 6999999999987664 456677776555432111 00
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~ 286 (323)
. .. ..+.|++|+.+|+++++++|++ ..+...++.+..
T Consensus 189 -~-----~~-----~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~i~~ 225 (228)
T 4i17_A 189 -K-----AK-----ADAAFKKAVDYLGEAVTLSPNR-TEIKQMQDQVKA 225 (228)
T ss_dssp -H-----HH-----HHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHT
T ss_pred -H-----HH-----HHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHH
Confidence 0 00 0356899999999999999998 788877777653
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.8e-22 Score=171.73 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
+++.++..|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|+.
T Consensus 2 n~~~~~~~a~~~~~~~~-------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~ 58 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNN-------------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD----------LAQK 58 (272)
T ss_dssp ---CHHHHHHHHHTTTC-------------HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH----------HHHH
Confidence 45678889999988885 567999999999999999999999999999999999 8999
Q ss_pred HHHHHHccCCCChhH----HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTT----LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 125 ~~~~al~l~p~~~~~----~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.++++++ .|.++.. +..+|.++...|++ ++|+.+|+++++++|++ +.++..+|.
T Consensus 59 ~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~l~~ 116 (272)
T 3u4t_A 59 DIETYFS-KVNATKAKSADFEYYGKILMKKGQD--------------------SLAIQQYQAAVDRDTTR-LDMYGQIGS 116 (272)
T ss_dssp HHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-THHHHHHHH
T ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhcCccc-HHHHHHHHH
Confidence 9999999 5555544 89999999998765 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|...|++++|+.+|++++.++|.+..... .++...+. .+++++|+..|.++++++|++ ...++.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~-~~~~~~ 181 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFY-----------ELGQAYYY---NKEYVKADSSFVKVLELKPNI-YIGYLW 181 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSSCCCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHSTTC-HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhcCCCcHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHhCccc-hHHHHH
Confidence 999999999999999999999988764322 12211111 358999999999999999998 799999
Q ss_pred HHHHHHHhcC---HHHHHHHHHHhhCCC
Q psy11738 281 LGKTYMRLEN---YEQAAYYLEMTKNYP 305 (323)
Q Consensus 281 lg~~y~~~g~---~~~A~~~~~~al~~~ 305 (323)
+|.++..+|+ +++|+.+|++++++.
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 9999999999 999999999999885
No 38
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=4.6e-23 Score=198.10 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=157.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
-.|++++++.++|.++..+|+++ +|+.+|++|++++|+++.++++||.++..+|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~-------------- 59 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-------------- 59 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH--------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------
Confidence 46999999999999999999999 999999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.+|+++++++|++ +.+++++|.+|..+|++++|+++|+++++++|++..... .++..+
T Consensus 60 ------~eA~~~~~~Al~l~P~~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~-----------~Lg~~~ 121 (723)
T 4gyw_A 60 ------QEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-----------NLASIH 121 (723)
T ss_dssp ------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHH
Confidence 99999999999999998 799999999999999999999999999999999865422 122222
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.. .|++++|+..|+++++++|++ +.++.+||.+|..+|++++|.+.|++++++.|+
T Consensus 122 ~~---~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KD---SGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH---TTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HH---cCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 22 689999999999999999999 899999999999999999999999999988665
No 39
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1e-22 Score=188.41 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=207.6
Q ss_pred hhhHHHHHHhhhHHHh---hccHHHHHHHHHhC-C--------C-------CCCHHHHHHHHHHHHHhcccCCCCcHHHH
Q psy11738 11 SKVSEEFLKKSDDLFE---EQQFEEVNKMLESS-E--------Y-------KEDVEIIWRLVRVKYNLATHSSSLSDADK 71 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~-~--------~-------~~~~~~~~~la~~y~~~~~~~~~~~~~~~ 71 (323)
|......+..+..++. .|++++|+..++++ . . |.++.++..+|.++...|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 252 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND---------- 252 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC----------
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC----------
Confidence 4456777888888876 89999999999876 3 2 5567788888888888874
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+++|+.+++++++.+|. +.++..+|.++...|++. +|+..++++++++|+++.++..+|.++...|
T Consensus 253 ---~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDST----------EYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp ---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCT----------TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 56799999999999999 999999999999999999 7888999999999999999999999999988
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
++ ++|+..|+++++++|++ ..++..+|.+|...|++++|+.++++++..+|.+.....
T Consensus 319 ~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 376 (514)
T 2gw1_A 319 NY--------------------DQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN- 376 (514)
T ss_dssp CT--------------------THHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH-
T ss_pred CH--------------------HHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH-
Confidence 77 99999999999999998 699999999999999999999999999999988764322
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh------hhHHHHHHHHH---hcCHHHHHHHHHHhh
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ------NVLMLGKTYMR---LENYEQAAYYLEMTK 302 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~------~~~~lg~~y~~---~g~~~~A~~~~~~al 302 (323)
.++..+.. .|++++|+..|.+++...|+. .. +++.+|.+|.. .|++++|+.+|++++
T Consensus 377 ----------~la~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 377 ----------FFAEILTD---KNDFDKALKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp ----------HHHHHHHH---TTCHHHHHHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHH---CCCHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 12222222 689999999999999999987 44 89999999999 999999999999999
Q ss_pred CCCChh
Q psy11738 303 NYPAVQ 308 (323)
Q Consensus 303 ~~~~~~ 308 (323)
++.|..
T Consensus 443 ~~~~~~ 448 (514)
T 2gw1_A 443 KLDPRS 448 (514)
T ss_dssp HHCTTC
T ss_pred HhCccc
Confidence 998763
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=2.2e-21 Score=165.67 Aligned_cols=234 Identities=16% Similarity=0.159 Sum_probs=195.9
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYN----LATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
.|.++...+..|..++..|++++|+..++++..|+++.+++.+|.+|.. .+ ++++|+.+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~-------------~~~~A~~~~~~a 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEK-------------NLKKAASFYAKA 68 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-------------CHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCC-------------CHHHHHHHHHHH
Confidence 3567788899999999999999999999998568999999999999988 55 457799999999
Q ss_pred ccCCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCcHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMPWYQ 157 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~~~ 157 (323)
++.+ ++.+++.+|.++.. .+++. +|+.+|+++++.+ ++.+++.+|.++.. .+
T Consensus 69 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~----------~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~------ 128 (273)
T 1ouv_A 69 CDLN--YSNGCHLLGNLYYSGQGVSQNTN----------KALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR------ 128 (273)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC------
T ss_pred HHCC--CHHHHHHHHHHHhCCCCcccCHH----------HHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc------
Confidence 9986 89999999999998 88887 8999999999884 89999999999887 55
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
++++|+.+|+++++.+ + +.+++.+|.+|.. .+++++|+.+|+++++.++ ... ..
T Consensus 129 --------------~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a-~~-- 186 (273)
T 1ouv_A 129 --------------DFKKAVEYFTKACDLN--D-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPG-CF-- 186 (273)
T ss_dssp --------------CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-HH--
T ss_pred --------------CHHHHHHHHHHHHhcC--c-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHH-HH--
Confidence 4599999999999986 3 5789999999999 9999999999999998742 111 11
Q ss_pred cchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCChh
Q psy11738 234 TDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~ 308 (323)
.++..+. +....+++++|+.+|+++++.+| +.+++.+|.+|.. .+++++|+.+|++++++.|..
T Consensus 187 --------~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 187 --------NAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp --------HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred --------HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 1222222 12236899999999999999977 4678999999999 999999999999999998764
Q ss_pred H
Q psy11738 309 E 309 (323)
Q Consensus 309 ~ 309 (323)
-
T Consensus 256 a 256 (273)
T 1ouv_A 256 A 256 (273)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=1.3e-21 Score=169.19 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=178.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--CCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--HEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 93 (323)
.....+..++..|++++|+..++.. .|.+..++..++..+...+ ++++|+..+++++.. +|+++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~-------------~~~~A~~~l~~ll~~~~~P~~~ 101 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHS-------------RRDAIVAELDREMSRSVDVTNT 101 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCST-------------THHHHHHHHHHHHHSCCCCSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCC-------------cHHHHHHHHHHHHhcccCCCCH
Confidence 3344566666667777766655542 3334555555555555444 457799999998865 69999
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+++.+|.++...|+++ +|++.+.+ |+++.++..+|.++..+|++
T Consensus 102 ~~~~~la~~~~~~g~~~----------~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~-------------------- 146 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPD----------AALRTLHQ-----GDSLECMAMTVQILLKLDRL-------------------- 146 (291)
T ss_dssp HHHHHHHHHHHHTTCHH----------HHHHHHTT-----CCSHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHCCCHH----------HHHHHHhC-----CCCHHHHHHHHHHHHHCCCH--------------------
Confidence 99999999999999999 88888877 89999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHH--HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLG--KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg--~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|++.|+++++++|++ ....+..+ .++...|++++|+.+|+++++.+|.+..... .++.++..
T Consensus 147 ~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~-----------~la~~~~~-- 212 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN-----------GQAACHMA-- 212 (291)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH-----------HHHHHHHH--
T ss_pred HHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHHH--
Confidence 99999999999999986 33333323 3344458999999999999999998754321 11222222
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH-HHHHHHHhhCCCChhHHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ-AAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~~~~~~~ 311 (323)
.|++++|+..|++++.++|++ +.++.++|.++..+|+.++ +..+++++++++|++...
T Consensus 213 -~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 213 -QGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 789999999999999999999 8999999999999999987 568999999998886554
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=6.1e-22 Score=163.06 Aligned_cols=210 Identities=16% Similarity=0.072 Sum_probs=184.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++.+++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~ 60 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQD-------------YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND----------K 60 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred CcccHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH----------H
Confidence 57788999999999999885 467999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCCCchhHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLML 198 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~l 198 (323)
|.+++.++++++|+++.++..+|.++... |++ ++|+..|+++++ .+|.. ..++..+
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~l 119 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRP--------------------AESMAYFDKALADPTYPTP-YIANLNK 119 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH--------------------HHHHHHHHHHHTSTTCSCH-HHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHcCcCCcch-HHHHHHH
Confidence 99999999999999999999999999988 766 999999999999 66765 5889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC-cchhhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP-LFYSQN 277 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p-~~~~~~ 277 (323)
|.++...|++++|+.+++++++.+|.+..... .++..+.. .|++++|+..+.+++...| +. ...
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~-~~~ 184 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK-----------ELARTKML---AGQLGDADYYFKKYQSRVEVLQ-ADD 184 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-----------HHHHHHHH---HTCHHHHHHHHHHHHHHHCSCC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCC-HHH
Confidence 99999999999999999999999988754321 12222222 5899999999999999999 87 788
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+..++.++...|+.+.|..+++.+.+..|++..
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 889999999999999999999999888777554
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.89 E-value=6.7e-22 Score=162.43 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHH----------------HHHHHHHhhc
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKW----------------LAVILNEKAT 108 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~~~~~~~~~~ 108 (323)
.++.++..|..+...|+ +++|+.+|+++++++|+++.++++ +|.++...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ-------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 56777888888888774 577999999999999999999998 7777777777
Q ss_pred ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 188 (323)
+. +|+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|
T Consensus 70 ~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~P 119 (208)
T 3urz_A 70 YD----------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE--------------------KDALRMYEKILQLEA 119 (208)
T ss_dssp HH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCT
T ss_pred HH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCC
Confidence 66 667777777777777777777777777766544 777777777777777
Q ss_pred CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh
Q psy11738 189 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 268 (323)
Q Consensus 189 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~ 268 (323)
++ +.+++++|.+|...|+.+ ...+...|.+++.
T Consensus 120 ~~-~~a~~~lg~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~ 152 (208)
T 3urz_A 120 DN-LAANIFLGNYYYLTAEQE----------------------------------------------KKKLETDYKKLSS 152 (208)
T ss_dssp TC-HHHHHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHC---C
T ss_pred CC-HHHHHHHHHHHHHHhHHH----------------------------------------------HHHHHHHHHHHhC
Confidence 76 577777777665554322 2233444444443
Q ss_pred hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhh
Q psy11738 269 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSY 320 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 320 (323)
..|. ...++.+|.++..+|++++|+.+|++++++.|+.+....|.++..+
T Consensus 153 ~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~~~ 202 (208)
T 3urz_A 153 PTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRI 202 (208)
T ss_dssp CCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3332 3457888999999999999999999999999998888777776544
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=179.85 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcc-cchHHHHHhHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSL-SDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATL-EGTKARIQQLETIK 123 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~ 123 (323)
.+.++.+...|+......... ......+.+++++..++.+....|.++.+++.+|.++...|++ . +|+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~----------~A~ 123 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP----------EAE 123 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCH----------HHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHH----------HHH
Confidence 344555566666554333210 0123456689999999999999999999999999999999999 8 899
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
++|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|+ . .++..+|.+|.
T Consensus 124 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~-~-~~~~~lg~~~~ 181 (474)
T 4abn_A 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDV--------------------TSAHTCFSGALTHCKN-K-VSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHTTCCC-H-HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCC-H-HHHHHHHHHHH
Confidence 999999999999999999999999998766 9999999999999999 3 99999999999
Q ss_pred Hc---------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHhhCC--
Q psy11738 204 RL---------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD-TLPTSSYEEALKYFLEAEKQHP-- 271 (323)
Q Consensus 204 ~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~Al~~~~~a~~~~p-- 271 (323)
.. |++++|+.+|++++.++|++..... .++ ...... ++. ....+++++|+..|.+++.++|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg---~~~~~~---~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY-ILG---NAYLSL---YFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHH---HHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-HHH---HHHHHH---HHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 99 9999999999999999999865422 111 111110 000 0122789999999999999999
Q ss_pred -cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 272 -LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 272 -~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
++ +.+++.+|.+|..+|++++|+.+|+++++++|...
T Consensus 255 ~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 255 SSN-PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 87 79999999999999999999999999999988744
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=5.2e-21 Score=160.86 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=183.9
Q ss_pred hhhh-HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKV-SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.|.. +..++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~a~ 98 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME-------------PKLADEEYRKAL 98 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 3444 677899999999999999999999987 489999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+.+|.++.++..+|.++...|++. +|.+++++++. ..|.++.++..+|.++...|++
T Consensus 99 ~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------- 157 (252)
T 2ho1_A 99 ASDSRNARVLNNYGGFLYEQKRYE----------EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------- 157 (252)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH-----------
T ss_pred HHCcCcHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH-----------
Confidence 999999999999999999999998 89999999999 8899999999999999998765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+.+|+++++.+|++ ..++..+|.+|...|++++|+.++++++..+|.+..... . ++
T Consensus 158 ---------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~----------~~ 216 (252)
T 2ho1_A 158 ---------AQAKEYFEKSLRLNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL-L----------GI 216 (252)
T ss_dssp ---------HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH-H----------HH
T ss_pred ---------HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH-H----------HH
Confidence 99999999999999997 699999999999999999999999999999987654321 1 11
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
..+.. .|++++|+..+++++...|+. +....
T Consensus 217 ~~~~~---~g~~~~A~~~~~~~~~~~p~~-~~~~~ 247 (252)
T 2ho1_A 217 RLAKV---FEDRDTAASYGLQLKRLYPGS-LEYQE 247 (252)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHCTTS-HHHHH
T ss_pred HHHHH---ccCHHHHHHHHHHHHHHCCCC-HHHHH
Confidence 11111 689999999999999999987 55443
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=3.5e-22 Score=192.02 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=162.0
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
.+..|+.++.+...|..+..+|++++|+..++++ .+|++++++..+|.+|..+|+ +++|+.+|++
T Consensus 2 pgs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-------------~~eA~~~~~~ 68 (723)
T 4gyw_A 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-------------LQEALMHYKE 68 (723)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHH
Confidence 4567889999999999999999999999999998 599999999999999999885 5779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
|++++|+++.++.++|.++..+|+++ +|+++|+++++++|+++.++.++|.++...|++
T Consensus 69 Al~l~P~~~~a~~nLg~~l~~~g~~~----------~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~----------- 127 (723)
T 4gyw_A 69 AIRISPTFADAYSNMGNTLKEMQDVQ----------GALQCYTRAIQINPAFADAHSNLASIHKDSGNI----------- 127 (723)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------
Confidence 99999999999999999999999999 899999999999999999999999999998765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ +.++.+||.+|..+|++++|++.+++++++.|+.
T Consensus 128 ---------~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 128 ---------PEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp ---------HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999998 7999999999999999999999999999876543
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=5.9e-21 Score=165.01 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=185.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
.+..+|..|+|++|+..+++. ..|++ .+....++++|...|++ ++|+..++. .+|....++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~-------------~~al~~~~~---~~~~~~~a~ 68 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY-------------GVVLDEIKP---SSAPELQAV 68 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHSCT---TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCH-------------HHHHHHhcc---cCChhHHHH
Confidence 467788899999999999886 35555 56778889999998854 567877765 256677788
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
..++..+...++.+ +|++.+++++.. +|+++.+++.+|.++...|++ +
T Consensus 69 ~~la~~~~~~~~~~----------~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~--------------------~ 118 (291)
T 3mkr_A 69 RMFAEYLASHSRRD----------AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP--------------------D 118 (291)
T ss_dssp HHHHHHHHCSTTHH----------HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH--------------------H
T ss_pred HHHHHHHcCCCcHH----------HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH--------------------H
Confidence 88888888887777 888999998875 699999999999999998765 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+|+..|++ |++ ..++..+|.+|..+|++++|+..|++++..+|.+..... ..+|... .. ..|
T Consensus 119 ~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l----~~a~~~l-----~~---~~~ 180 (291)
T 3mkr_A 119 AALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL----ATAWVSL-----AA---GGE 180 (291)
T ss_dssp HHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHH-----HH---CTT
T ss_pred HHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHH----HHHHHHH-----Hh---Cch
Confidence 99999998 777 699999999999999999999999999999887642111 0111111 11 258
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++++|+..|.+++..+|++ +.+++.+|.++..+|++++|..+|+++++++|+
T Consensus 181 ~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998 799999999999999999999999999999887
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=1.4e-20 Score=154.81 Aligned_cols=213 Identities=14% Similarity=0.071 Sum_probs=183.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|..+...+..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~ 69 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-------------NDKAQESFRQAL 69 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-------------hHHHHHHHHHHH
Confidence 35677788899999999999999999999987 589999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
+.+|.++.++..+|.++... |++. +|...++++++ ..|.+..++..+|.++...|++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 129 (225)
T 2vq2_A 70 SIKPDSAEINNNYGWFLCGRLNRPA----------ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF---------- 129 (225)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCCHH----------HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------
T ss_pred HhCCCChHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------
Confidence 99999999999999999999 9998 89999999999 6677789999999999988765
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCchhhhhhhcchhHHHHH
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV-KQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~ 242 (323)
++|+.+|+++++.+|++ ..++..+|.++...|++++|+.++++++..+| .+..... .+ ..+
T Consensus 130 ----------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~---~~~--- 191 (225)
T 2vq2_A 130 ----------GLAEAYLKRSLAAQPQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL-LG---WKI--- 191 (225)
T ss_dssp ----------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH-HH---HHH---
T ss_pred ----------HHHHHHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH---HHH---
Confidence 99999999999999998 69999999999999999999999999999988 6544321 11 111
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
.. ..+++++|..+++.+...+|++ +.....
T Consensus 192 ----~~---~~~~~~~a~~~~~~~~~~~p~~-~~~~~~ 221 (225)
T 2vq2_A 192 ----AK---ALGNAQAAYEYEAQLQANFPYS-EELQTV 221 (225)
T ss_dssp ----HH---HTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred ----HH---hcCcHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 11 1678999999999999999987 555443
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.9e-20 Score=163.09 Aligned_cols=226 Identities=8% Similarity=-0.067 Sum_probs=189.3
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHh-------cccCCCCcHHHHHHHHHHHHHHHHhhcc-CCCCcHHHHHHHH
Q psy11738 31 EEVNKMLESS--EYKEDVEIIWRLVRVKYNL-------ATHSSSLSDADKKQLILSAYFLVYNALP-QHEDHYAIHKWLA 100 (323)
Q Consensus 31 ~~A~~~~~~~--~~~~~~~~~~~la~~y~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~ 100 (323)
++|+..++++ .+|.++++|+.+|..+... |+. +...+.+++|+..+++|++ ++|+++.++..+|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~------~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM------NNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC------HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccch------hhcccchHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 6788888887 4999999999999998754 432 2235567899999999999 7999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
.++...|+++ +|+..|+++++++|.++. +|..+|.++...|++ ++|+..
T Consensus 107 ~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~ 156 (308)
T 2ond_A 107 DYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------------KSGRMI 156 (308)
T ss_dssp HHHHHTTCHH----------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH--------------------HHHHHH
T ss_pred HHHHhcCCHH----------HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH--------------------HHHHHH
Confidence 9999999888 899999999999999997 999999999888766 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
|+++++.+|.. ..++...+.+... .|++++|+.+|+++++.+|++..... ..+..+. ..|++++
T Consensus 157 ~~~a~~~~p~~-~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~~~~~~~---~~g~~~~ 221 (308)
T 2ond_A 157 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL-----------AYIDYLS---HLNEDNN 221 (308)
T ss_dssp HHHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHHH---TTCCHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHH---HCCCHHH
Confidence 99999999987 5777666655433 79999999999999999998754321 1122222 2689999
Q ss_pred HHHHHHHHHhh---CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQ---HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~---~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|+..|.+++.. .|+.....|..++..+...|+.++|...+.++++..|+
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999995 56433678999999999999999999999999999886
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=5.4e-21 Score=162.54 Aligned_cols=229 Identities=9% Similarity=-0.076 Sum_probs=187.6
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.|..+..++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al~ 105 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-------------FDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHh
Confidence 5677788899999999999999999999997 599999999999999999885 4679999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++|.++.++..+|.++...|++. +|+..|+++++++|+++.....++.. ...|+
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--------------- 159 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDK----------LAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--------------- 159 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---------------
T ss_pred cCccccHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---------------
Confidence 99999999999999999999998 89999999999999999777666644 44454
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
+++|+..|.+++...|++ ... ..++.++...++.++|+..+++++...|....... .....++..+
T Consensus 160 -----~~~A~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~ 225 (275)
T 1xnf_A 160 -----EKQAKEVLKQHFEKSDKE-QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS-------ETNFYLGKYY 225 (275)
T ss_dssp -----HHHHHHHHHHHHHHSCCC-STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH-------HHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCCcc-hHH-HHHHHHHHHhcCHHHHHHHHHHHhccccccccccc-------HHHHHHHHHH
Confidence 499999999999999986 344 45888899999999999999999998665321111 1112233333
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 298 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 298 (323)
.. .|++++|+..|++++.++|++ +...+.++..+|++++|+..|
T Consensus 226 ~~---~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LS---LGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---TTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HH---cCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 33 689999999999999999976 234588999999999999887
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=176.16 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=187.1
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~ 76 (323)
....|..+..++..|..++..|++++|+..++++ . .|..+.++..+|.+|...|++ +
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------~ 86 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-------------K 86 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-------------H
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------------H
Confidence 4556777888899999999999999999999886 2 455678889999999988854 5
Q ss_pred HHHHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--------CCChhHH
Q psy11738 77 SAYFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--------PDDSTTL 140 (323)
Q Consensus 77 ~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--------p~~~~~~ 140 (323)
+|+.++++++.+ +|..+.++..+|.++...|++. +|..+|.+++++. |....++
T Consensus 87 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH----------HHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 577777777766 4777889999999999999998 8888899998874 5667789
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..+|.++...|++ ++|+.+|++++++ +|.. ..++..+|.+|...|++++|+
T Consensus 157 ~~la~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 157 NNLALLCQNQGKY--------------------EEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHTTTCH--------------------HHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHH
Confidence 9999999888755 9999999999998 6664 578999999999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
.++++++.+.|..............|.......... .....+.+.+|+..+.++...+|.. ..++..+|.+|...|++
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV-TTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHCCCH
Confidence 999999975432110000000000011110000000 1122456778888899999889987 78999999999999999
Q ss_pred HHHHHHHHHhhCCCCh
Q psy11738 292 EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~ 307 (323)
++|+.+|++++++.|.
T Consensus 295 ~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 295 EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988664
No 52
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1.3e-21 Score=160.60 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=149.3
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHH----------------HHHHHHHhcccCCCCcHHHHHHH
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWR----------------LVRVKYNLATHSSSLSDADKKQL 74 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~----------------la~~y~~~~~~~~~~~~~~~~~~ 74 (323)
.+..++.+|..++..|++++|+..++++ .+|+++++++. +|.+|...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------------- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN------------- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------------
Confidence 5678899999999999999999999997 59999999999 9999998885
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+++|+..++++++++|+++.++..+|.++...|++. +|+.+|+++++++|+++.+++.+|.+++..+..
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~- 138 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK----------DALRMYEKILQLEADNLAANIFLGNYYYLTAEQ- 138 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-
Confidence 577999999999999999999999999999999999 899999999999999999999999998876532
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
....+...|.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+.
T Consensus 139 -----------------~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 -----------------EKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----------------HHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----------------HHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 126778888888765444 3578889999999999999999999999999974
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=1.2e-21 Score=176.57 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=168.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.....++..|..++..|++++|+..++++ ..|++. .++..+|.+|...|++ ++|+.++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~-------------~~A~~~~~~ 111 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY-------------NKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH-------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHH
Confidence 456677889999999999999999999987 477776 5788999999888854 567888888
Q ss_pred hccC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHHhhHHHHhcC
Q psy11738 85 ALPQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL------KPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 85 al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~lg~~~~~~~~ 152 (323)
++++ .|..+.++..+|.++...|++. +|..+|.+++++ .|....++..+|.++...|+
T Consensus 112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD----------EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 8777 6888899999999999999998 888899999988 56677799999999999887
Q ss_pred -----------------CcHHHHHHHHH----------------hh--c--CCCCCCHHHHHHHHHHHHhcCCCch----
Q psy11738 153 -----------------MPWYQRKIANA----------------IF--D--TLPTSSYEEALKYFLEAEKQHPLFY---- 191 (323)
Q Consensus 153 -----------------~~~~~~~~~~~----------------~~--~--~~~~~~~~~A~~~~~~al~~~p~~~---- 191 (323)
+......+... .. + -...|++++|+.+|++++++.|...
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 41111100000 00 0 0123455555555555555543320
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 192 -SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 192 -~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
..++..+|.+|...|++++|+.+|++++.+.|....... .......++..+.. .|++++|+.+|.+++.+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-----EAQSCYSLGNTYTL---LHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHH
Confidence 014555555555555555555555555554433221111 01111222222222 455666666666665554
Q ss_pred Ccc-----hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHH
Q psy11738 271 PLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKL 313 (323)
Q Consensus 271 p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 313 (323)
+.. ...++..+|.+|..+|++++|..+|++++++.+.......
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 432 0124555666666666666666666666655555444443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=174.77 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=99.7
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
........++..|..++..|++++|+..++++ ..|.+ +.++..+|.+|...|++ ++|+.++
T Consensus 4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~ 70 (406)
T 3sf4_A 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-------------AKALEYH 70 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCH-------------HHHHHHH
Confidence 34556677899999999999999999999987 47777 46788999999988854 5577777
Q ss_pred HhhccC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh
Q psy11738 83 YNALPQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI 150 (323)
Q Consensus 83 ~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~ 150 (323)
++++.+ .|..+.++..+|.++...|++. +|..++.+++++.|.. ..++..+|.++...
T Consensus 71 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 777666 5667888999999999999998 8899999999987764 44899999999998
Q ss_pred cC
Q psy11738 151 TD 152 (323)
Q Consensus 151 ~~ 152 (323)
|+
T Consensus 141 g~ 142 (406)
T 3sf4_A 141 GK 142 (406)
T ss_dssp HH
T ss_pred CC
Confidence 87
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=1.4e-21 Score=175.17 Aligned_cols=232 Identities=13% Similarity=0.199 Sum_probs=181.5
Q ss_pred hhhHHHhhccHHHHHHHHHhC-C----CCC---CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC-
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS-E----YKE---DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE- 90 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~-~----~~~---~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 90 (323)
.|..++..|++++|+..++++ . .++ .+.++..+|.+|..+|++ ++|+.++++|+++.+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~-------------~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT-------------YFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHHHHh
Confidence 899999999999999999986 2 233 467889999999998864 557777777777644
Q ss_pred ------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCCcHHHH
Q psy11738 91 ------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~~~~~~ 158 (323)
..+.++..+|.++..+|+++ +|.++|.+++++.|... .++.++|.++...|++
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~----- 240 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYE----------DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY----- 240 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH-----
Confidence 34558889999999999998 89999999999876554 4889999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHh-----cC-CCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEK-----QH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++|+.+|+++++ .+ |.. +.++.++|.+|..+|++++|+.++++++.+.+.........
T Consensus 241 ---------------~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 241 ---------------EDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999 45 665 68899999999999999999999999998854322211100
Q ss_pred hcchhHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSS---YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~---~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
. ...++.... ..++ +++|+..+++. ...|.. ..++..+|.+|..+|++++|..+|++++++..
T Consensus 305 -----~-~~~l~~~~~---~~~~~~~~~~al~~~~~~-~~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 305 -----E-FEFLKSLYL---SGPDEEAIQGFFDFLESK-MLYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----H-HHHHHHHHT---SSCCHHHHHHHHHHHHHT-TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----H-HHHHHHHHh---CCCcHHHHHHHHHHHHHC-cCHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0 011222222 2455 88999999887 334444 57788999999999999999999999987744
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-20 Score=156.74 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.+..+|.++...|+ +++|+.+++++++.+ .++.++..+|.++...|++. +|+.
T Consensus 4 ~a~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~----------~A~~ 59 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQ-------------FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE----------TAIS 59 (258)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH----------HHHH
Confidence 46788889999988885 577999999999999 89999999999999999999 8999
Q ss_pred HHHHHHccCCCC-------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 125 HMNKAIELKPDD-------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 125 ~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
.+.++++++|++ +.++..+|.++...|++ ++|+.+|+++++++|+
T Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~-------- 111 (258)
T 3uq3_A 60 TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL--------------------KKTIEYYQKSLTEHRT-------- 111 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCCC--------
T ss_pred HHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhcCch--------
Confidence 999999999987 78999999999998765 9999999999999987
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+.++...|++++|+..+++++..+|.+..... .++..++. .|++++|+..|.+++..+|++ +.+
T Consensus 112 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~ 175 (258)
T 3uq3_A 112 -ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR-----------LEGKEYFT---KSDWPNAVKAYTEMIKRAPED-ARG 175 (258)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred -hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH-----------HHHHHHHH---hcCHHHHHHHHHHHHhcCccc-HHH
Confidence 24566778899999999999998876543211 22222332 689999999999999999998 799
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..+|.+|...|++++|+.+|++++++.|.
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 999999999999999999999999999877
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=5.1e-21 Score=166.54 Aligned_cols=247 Identities=16% Similarity=0.116 Sum_probs=151.5
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
....++..|..++..|++++|+..++++ ..|.+ +.++..+|.+|...|++ ++|+.++++++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al 70 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-------------AKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHH
Confidence 4567889999999999999999999987 47777 46788999999988854 55777777777
Q ss_pred cC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcC--
Q psy11738 87 PQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITD-- 152 (323)
Q Consensus 87 ~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~-- 152 (323)
.+ .|..+.++..+|.++...|++. +|..++.+++++.|.... ++..+|.++...|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 66 5667888999999999999998 888999999998776543 88899999998887
Q ss_pred -----------CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 153 -----------MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 153 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
...... .+++|+.+|++++++ .|. ...++..+|.+|...|++++|+.++
T Consensus 141 ~~~~~~~~~~~~~~a~~-------------~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRN-------------ALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp SSSSCC----CCHHHHH-------------HHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHH-------------HHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 100000 025555555555543 111 1234555555555555555555555
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHHHHhcC
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y~~~g~ 290 (323)
++++.+.+....... .......++..+.. .|++++|+..+.+++.+.|.. ...++..+|.+|...|+
T Consensus 207 ~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAA-----ERRAYSNLGNAYIF---LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHTCHHH-----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCChHH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 555554332211000 00001111111111 345555555555555443321 01334455555555555
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
+++|..++++++.+
T Consensus 279 ~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 279 YEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=4.9e-20 Score=156.32 Aligned_cols=191 Identities=10% Similarity=-0.007 Sum_probs=157.1
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.+++|.++..++.+|..+...|++. +|+..|+++++..|++ +.+++.+|.+++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~--------- 68 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYD----------RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY--------- 68 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHH----------HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH---------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH---------
Confidence 4578999999999999999999999 8999999999999999 88999999999998765
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHH--------cCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMR--------LENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++|+..|++++++.|++ .+.+++.+|.++.. .|++++|+..|++++...|++.......
T Consensus 69 -----------~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 69 -----------LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp -----------HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 99999999999998864 24689999999999 9999999999999999999886443210
Q ss_pred --h----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc--hhhhhHHHHHHHHHh----------cCHHHH
Q psy11738 233 --I----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRL----------ENYEQA 294 (323)
Q Consensus 233 --~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~--~~~~~~~lg~~y~~~----------g~~~~A 294 (323)
+ ..+......++..++. .|++++|+..|++++...|+. .+.+++.+|.+|..+ |++++|
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYER---RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 0 0000001223333333 789999999999999999984 146899999999987 999999
Q ss_pred HHHHHHhhCCCChhH
Q psy11738 295 AYYLEMTKNYPAVQE 309 (323)
Q Consensus 295 ~~~~~~al~~~~~~~ 309 (323)
+.+|+++++..|++.
T Consensus 215 ~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 215 VELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHCCCCh
Confidence 999999999988753
No 59
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=3.8e-20 Score=159.96 Aligned_cols=228 Identities=12% Similarity=0.012 Sum_probs=167.8
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC------cHHHHHHHHHH
Q psy11738 29 QFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED------HYAIHKWLAVI 102 (323)
Q Consensus 29 ~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~ 102 (323)
++++|+..+.++ |.+|...|++ ++|+.+|++++++.+. .+.++..+|.+
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 86 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKEL-------------NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKC 86 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCT-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCH-------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 477777766653 6677777754 6688888888887532 36788999999
Q ss_pred HHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 103 LNEKATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|..+|++. +|+.+|++|+++.|.. ..++..+|.++... |++ ++
T Consensus 87 ~~~~g~~~----------~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~--------------------~~ 136 (292)
T 1qqe_A 87 FKSGGNSV----------NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY--------------------AK 136 (292)
T ss_dssp HHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------------------HH
T ss_pred HHHCCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH--------------------HH
Confidence 99999998 8999999999998764 45788999998885 765 99
Q ss_pred HHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 176 ALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 176 A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
|+.+|++++++.|+.. ..++.++|.+|..+|++++|+.+|++++.++|.+...... .......++.++..
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~lg~~~~~- 211 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS----LKDYFLKKGLCQLA- 211 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH----HHHHHHHHHHHHHH-
Confidence 9999999999977531 3568899999999999999999999999999887543210 00011112222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhh-----hHHHHHHHH--HhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQN-----VLMLGKTYM--RLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~-----~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
.|++++|+.+|.+++.++|++ ... +..++.++. ..+++++|+..|.+++.++|.. ..++.+++..+
T Consensus 212 --~g~~~~A~~~~~~al~l~p~~-~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~--~~~~~~~k~~~ 284 (292)
T 1qqe_A 212 --ATDAVAAARTLQEGQSEDPNF-ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK--ITILNKIKESI 284 (292)
T ss_dssp --TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH--HHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH--HHHHHHHHHHh
Confidence 689999999999999999986 332 445666665 5678999999999999998865 35555555443
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=4e-20 Score=156.88 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=146.4
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
...+.++..++..|..++..|+|++|+..++++ ..|++ +++++.+|.+|...|+ +++|+..+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~ 75 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-------------YLLAASEY 75 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-------------HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-------------HHHHHHHH
Confidence 446777889999999999999999999999997 47888 9999999999999885 46799999
Q ss_pred HhhccCCCC---cHHHHHHHHHHHHH--------hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH-----------
Q psy11738 83 YNALPQHED---HYAIHKWLAVILNE--------KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL----------- 140 (323)
Q Consensus 83 ~~al~~~p~---~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~----------- 140 (323)
+++++++|+ .+.+++.+|.++.. .|++. +|+..|+++++..|+++.+.
T Consensus 76 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~----------~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 76 ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTR----------KAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHH----------HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHH----------HHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 999999885 46789999999998 78777 89999999999999998877
Q ss_pred ------HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHc-------
Q psy11738 141 ------FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRL------- 205 (323)
Q Consensus 141 ------~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~------- 205 (323)
+.+|.+++..|++ ++|+..|+++++..|++. +.+++.+|.+|..+
T Consensus 146 ~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 146 KLARKQYEAARLYERRELY--------------------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 7778888887655 999999999999999841 46899999999988
Q ss_pred ---CCHHHHHHHHHHHhCCCCCC
Q psy11738 206 ---ENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 206 ---g~~~~A~~~~~~al~~~~~~ 225 (323)
|++++|+.+|++++...|++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccchHHHHHHHHHHHHHHCCCC
Confidence 55555555555555555544
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.9e-19 Score=156.70 Aligned_cols=192 Identities=12% Similarity=0.014 Sum_probs=162.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh-------hcccchHHHHHhHHHHHHHHHHHHc-cCCCChhHHHHHhhH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEK-------ATLEGTKARIQQLETIKHHMNKAIE-LKPDDSTTLFMLGMW 146 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~~~~~~lg~~ 146 (323)
.++|+..|++++..+|.++++|+.+|.++... |+.. ...+...+|+..|++|++ ++|++..+|..+|.+
T Consensus 32 ~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN---NAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH---HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh---hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 36799999999999999999999999988754 5542 112233489999999999 799999999999999
Q ss_pred HHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 147 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ-NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+...|++ ++|+..|+++++++|++ +. +|..+|.++.+.|++++|+..|+++++.+|..
T Consensus 109 ~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 109 EESRMKY--------------------EKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHTTCH--------------------HHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHhcCCH--------------------HHHHHHHHHHHhccccC-ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 9887765 99999999999999997 55 89999999999999999999999999999876
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..... ..+...+ ...|++++|+..|++++..+|++ +..+..+|.++...|++++|+.+|++++..
T Consensus 168 ~~~~~-----------~~a~~~~--~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 168 HHVYV-----------TAALMEY--YCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp THHHH-----------HHHHHHH--HTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHH-----------HHHHHHH--HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 43211 1111111 11589999999999999999998 799999999999999999999999999995
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=169.84 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=191.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...++..|..++..|++++|+..++++ . .|..+.++..+|.+|...|+ +++|+.+++++
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~a 113 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN-------------FDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Confidence 456778999999999999999988875 1 34457788899999988885 46688888888
Q ss_pred ccCCCCc------HHHHHHHHHHHHHhhcccc----------hHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHH
Q psy11738 86 LPQHEDH------YAIHKWLAVILNEKATLEG----------TKARIQQLETIKHHMNKAIEL------KPDDSTTLFML 143 (323)
Q Consensus 86 l~~~p~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~l 143 (323)
+++.|.. +.++..+|.++...|+... ..+......+|..++.+++.+ .|....++..+
T Consensus 114 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 193 (406)
T 3sf4_A 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 8887765 4488899999999998100 001122233888888888887 34445678899
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|.++...|++ ++|+.+|++++++.|... ..++..+|.+|...|++++|+.+++++
T Consensus 194 a~~~~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 194 GNTHYLLGNF--------------------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHTBH--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCH--------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999988765 999999999999855431 238999999999999999999999999
Q ss_pred hCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH
Q psy11738 219 KNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~ 293 (323)
+.+.|....... .......++..+.. .|++++|+.+|.+++.+.+... ..++..+|.+|..+|++++
T Consensus 254 l~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 254 LLLARQLKDRAV-----EAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCcCchH-----HHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 988665432111 01112223333333 6899999999999998855431 3578899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|++++++.+.
T Consensus 326 A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 326 AMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988544
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=1.4e-20 Score=169.67 Aligned_cols=235 Identities=12% Similarity=0.046 Sum_probs=171.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS-E-------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~-~-------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..++..|..++..|++++|+..++++ . .+..+.++..+|.+|...|++ ++|+.++++++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al 153 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF-------------DEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHH
Confidence 45778999999999999999998875 1 355678888999999988854 56788888887
Q ss_pred cC------CCCcHHHHHHHHHHHHHhhc----------ccchHHHHHhHHHHHHHHHHHHccC------CCChhHHHHHh
Q psy11738 87 PQ------HEDHYAIHKWLAVILNEKAT----------LEGTKARIQQLETIKHHMNKAIELK------PDDSTTLFMLG 144 (323)
Q Consensus 87 ~~------~p~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~~~al~l~------p~~~~~~~~lg 144 (323)
++ .|..+.++..+|.++...|+ +. .......+|++++.+++++. |....++..+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~---~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 230 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD---DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh---hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77 67778899999999999999 22 11222337888888887764 33455888999
Q ss_pred hHHHHhcCCcHHHHHHHHHh----------------h--c--CCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHH
Q psy11738 145 MWCFEITDMPWYQRKIANAI----------------F--D--TLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLG 199 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~----------------~--~--~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg 199 (323)
.++...|++......+..++ . + -...|++++|+.+|++++++.|.. ...++..+|
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999887743222111110 0 0 025689999999999999986653 136789999
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+|...|++++|+.++++++.+.+....... .......++..+.. .|++++|+.+|.+++.+.+..
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIG-----EARACWSLGNAHSA---IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHH-----HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999997554332211 11222334444444 789999999999999999865
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.8e-20 Score=177.97 Aligned_cols=204 Identities=13% Similarity=-0.021 Sum_probs=169.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc--------cCCCCcHHHHHHHHHHHHHhhcccch
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL--------PQHEDHYAIHKWLAVILNEKATLEGT 112 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (323)
.+|+++.+.+..+ ... +++++|+..+++++ +.+|+++.++..+|.++...|++.
T Consensus 389 ~~p~~~~a~~~~a---~~~-------------~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~-- 450 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVL-------------SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVA-- 450 (681)
T ss_dssp CCTTSTTHHHHHH---TTT-------------CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHH--
T ss_pred CCCCCcchHHhhc---ccc-------------cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHH--
Confidence 4778877766555 222 25688999999999 999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 113 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
+|+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +
T Consensus 451 --------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~P~~-~ 501 (681)
T 2pzi_A 451 --------KATRKLDDLAERVGWRWRLVWYRAVAELLTGDY--------------------DSATKHFTEVLDTFPGE-L 501 (681)
T ss_dssp --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHSTTC-S
T ss_pred --------HHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-h
Confidence 899999999999999999999999999998765 99999999999999998 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+++++|.+|..+|++++ +.+|+++++++|++..... .++.++.. .|++++|+..|.+++.++|+
T Consensus 502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-----------~lg~~~~~---~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 502 APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-----------GLARARSA---EGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-----------HHHHHHHH---cCCHHHHHHHHHhhcccCcc
Confidence 999999999999999999 9999999999999875422 12222222 78999999999999999999
Q ss_pred chhhhhHHHHHHHHHhcC--------HHHHHHHHHHhhCCCCh
Q psy11738 273 FYSQNVLMLGKTYMRLEN--------YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~ 307 (323)
+ ..+++++|.++...|+ +.+|...+.+....+|.
T Consensus 567 ~-~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 567 F-TTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp H-HHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred c-HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 8 7999999999977554 66666666555433444
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=2.9e-18 Score=146.20 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH----hhcccchHHHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNE----KATLEGTKARIQ 117 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 117 (323)
+|+++.+++.+|.+|...++ +++|+.+++++++ |.++.+++.+|.++.. .+++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~------- 59 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-------------FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLK------- 59 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH-------
T ss_pred CCCChHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHH-------
Confidence 57899999999999998884 4679999999998 7889999999999999 88887
Q ss_pred hHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH
Q psy11738 118 QLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 193 (323)
Q Consensus 118 ~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 193 (323)
+|+.+|+++++++ ++.+++.+|.++.. .++ +++|+.+|+++++.+ + +.
T Consensus 60 ---~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~--------------------~~~A~~~~~~a~~~~--~-~~ 111 (273)
T 1ouv_A 60 ---KAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN--------------------TNKALQYYSKACDLK--Y-AE 111 (273)
T ss_dssp ---HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--------------------HHHHHHHHHHHHHTT--C-HH
T ss_pred ---HHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC--------------------HHHHHHHHHHHHHcC--C-cc
Confidence 8999999999986 89999999999887 554 499999999999984 4 68
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHh
Q psy11738 194 NVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEK 268 (323)
Q Consensus 194 ~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~ 268 (323)
+++.+|.+|.. .+++++|+.+|+++++.++. .. .. .++..+. +....+++++|+.+|+++++
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a-~~----------~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG--DG-CT----------ILGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH--HH-HH----------HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH--HH-HH----------HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 99999999999999987521 11 11 1222222 11236899999999999998
Q ss_pred hCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCC
Q psy11738 269 QHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~ 306 (323)
.++ +.+++.+|.+|.. .+++++|+.+|+++++..|
T Consensus 179 ~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 179 LKD---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp TTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCC---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 854 5779999999999 9999999999999999876
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=3.8e-19 Score=141.49 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=159.0
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
......++..|..++..|++++|+..++++ ..|.++.++..+|.++...|+ +++|+.+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-------------VDRGTELLERSLAD 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhc
Confidence 344566788999999999999999999998 588999999999999998885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|.++++++++.+|+++.++..+|.++...|++
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 126 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYD----------LAVPLLIKVAEANPINFNVRFRLGVALDNLGRF--------------- 126 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred CCCCHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH---------------
Confidence 9999999999999999999998 899999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++..|++ +.++..+|.++...|++++|+.++++++.++|.+..
T Consensus 127 -----~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 127 -----DEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -----HHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999997 699999999999999999999999999999887754
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=6.7e-21 Score=162.09 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=165.9
Q ss_pred hhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--------CCCcHH
Q psy11738 26 EEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--------HEDHYA 94 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 94 (323)
...-+++|+..+.+. ..|..+.++..+|.+|...|++ ++|+.++++++++ +|..+.
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-------------KEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH-------------HHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 334455566666554 2466788899999999998854 5577888777766 577888
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++..+|.++...|++. +|.++|.+++.+ +|....++..+|.++...|++
T Consensus 87 ~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------- 143 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA------------- 143 (283)
T ss_dssp HHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-------------
T ss_pred HHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH-------------
Confidence 9999999999999998 888899999988 577788899999999988765
Q ss_pred CCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW 238 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 238 (323)
++|+.+|++++++ +|.. ..++..+|.+|..+|++++|+.++++++.+.|..............+
T Consensus 144 -------~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 144 -------EEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp -------HHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred -------HHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 9999999999998 6664 58899999999999999999999999998743321110000001111
Q ss_pred HHHHHHHHhhc-cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 239 YQRKIANAIFD-TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 239 ~~~~~a~~~~~-~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..........+ ......+.++...+.......|.. ..++..+|.+|..+|++++|..+|++++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11111111000 112344666777776666666766 6889999999999999999999999999864
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=2.4e-20 Score=162.21 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=187.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...+...|..++..|++++|+..++++ . .+..+.++..+|.+|...|+ +++|+.+++++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~a 109 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN-------------FDEAIVCCQRH 109 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC-------------HHHHHHHHHHH
Confidence 455678899999999999999998875 1 33457788899999988885 46688888888
Q ss_pred ccCCCCcH------HHHHHHHHHHHHhhcccc----------hHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHH
Q psy11738 86 LPQHEDHY------AIHKWLAVILNEKATLEG----------TKARIQQLETIKHHMNKAIEL------KPDDSTTLFML 143 (323)
Q Consensus 86 l~~~p~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~l 143 (323)
+++.|... .++..+|.++...|+... .........+|.+++.+++.+ .|....++..+
T Consensus 110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 87766543 388889999999998100 001122233788888888876 33445678899
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|.++...|++ ++|+.+|++++++.|.. ...++..+|.+|...|++++|+.+++++
T Consensus 190 ~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 190 GNTHYLLGNF--------------------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCH--------------------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888765 99999999999885442 1237999999999999999999999999
Q ss_pred hCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH
Q psy11738 219 KNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~ 293 (323)
+.+.|....... .......++..+.. .|++++|+.++.+++.+.|... ..++..+|.+|..+|++++
T Consensus 250 l~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 250 LLLARQLKDRAV-----EAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhcchhH-----HHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 987655432111 01112223333333 6899999999999998865431 2478899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|..+|++++++.+.
T Consensus 322 A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 322 AMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998664
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=5.3e-19 Score=140.67 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..++++++.+|.++.++..+|.++...|++. +|..+++++++++|+++.++..+|.++...|++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 92 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD----------RGTELLERSLADAPDNVKVATVLGLTYVQVQKY-- 92 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--
Confidence 44566666666666665555555666555555555 555556666666666555555566555555433
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
++|+.+|+++++.+|++ +.++..+|.++...|++++|+.+++
T Consensus 93 ------------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~------------------- 134 (186)
T 3as5_A 93 ------------------DLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFK------------------- 134 (186)
T ss_dssp ------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHH-------------------
T ss_pred ------------------HHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHH-------------------
Confidence 55666666666655554 4555555555555555555555554
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+++...|+. +.++..+|.+|...|++++|..++++++++.|++
T Consensus 135 -----------------------------~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 135 -----------------------------IALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp -----------------------------HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred -----------------------------HHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555655 5667788888888888888888888887776554
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2.1e-19 Score=172.87 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=152.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
.++...+..+ +..|++++|+..++++ .+|+++++++.+|.+|...|+ +++|+..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-------------~~~A~~~ 455 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-------------VAKATRK 455 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-------------HHHHHHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-------------HHHHHHH
Confidence 3333444444 7789999999988764 268999999999999999885 4679999
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
++++++++|+++.+++.+|.++...|+++ +|+..|+++++++|+++.+++.+|.++...|++
T Consensus 456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~----------~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~-------- 517 (681)
T 2pzi_A 456 LDDLAERVGWRWRLVWYRAVAELLTGDYD----------SATKHFTEVLDTFPGELAPKLALAATAELAGNT-------- 517 (681)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC--------
T ss_pred HHHHhccCcchHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--------
Confidence 99999999999999999999999999999 899999999999999999999999999999877
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++ +.+|+++++++|++ ..+++++|.+|..+|++++|+.+|+++++++|++...
T Consensus 518 ------------~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 518 ------------DE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp ------------CT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred ------------HH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 88 99999999999998 6999999999999999999999999999999987654
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=3e-20 Score=144.50 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
++.+++|+..+++++..+|+++.+++.+|.+|...|+++ +|+++|+++++++|+++.+|+.+|.++...|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD----------LAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 345566777777777777777777777777777777666 6666777777777777777777777776665
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHhCCCCCCchh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTKNYPVKQDKD 228 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~~~~ 228 (323)
++ ++|+.+|+++++++|++ +.+++.+|.+|...|++++|... ++++++++|++...
T Consensus 80 ~~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 80 NT--------------------DKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred ch--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 44 77777777777777776 56677777777777776655543 46777777766543
No 72
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=1e-19 Score=141.43 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=122.5
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
++|.++...|+++ +|+..+.+++..+|+++.+++.+|.+|+..|++ ++|+
T Consensus 2 ~LG~~~~~~~~~e----------~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~--------------------~~A~ 51 (150)
T 4ga2_A 2 PLGSMRRSKADVE----------RYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY--------------------DLAK 51 (150)
T ss_dssp -----CCCHHHHH----------HHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH--------------------HHHH
T ss_pred HhHHHHHHcChHH----------HHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH--------------------HHHH
Confidence 4677777777777 899999999999999999999999999998765 9999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
++|+++++++|++ +.+++.+|.+|..+|++++|+.+|+++++++|++..... .++..+.. .++++
T Consensus 52 ~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~la~~~~~---~~~~~ 116 (150)
T 4ga2_A 52 KYICTYINVQERD-PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL-----------KIAELLCK---NDVTD 116 (150)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---HCSSS
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCChH
Confidence 9999999999998 799999999999999999999999999999999876432 12222222 46777
Q ss_pred HHHHH-HHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 258 EALKY-FLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 258 ~Al~~-~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
+|+.. ++++++++|++ +.++..++.++...|+
T Consensus 117 ~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 117 GRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 77765 58999999998 7889999999988875
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=1e-19 Score=162.77 Aligned_cols=236 Identities=15% Similarity=0.168 Sum_probs=180.5
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-C----CC---CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-E----YK---EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~----~~---~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
.+..|..++..|++++|+..++++ . .+ ..+.++..+|.+|..+|++ ++|+.++++++++
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~-------------~~A~~~~~~al~~ 170 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT-------------HVSMYHILQALDI 170 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc-------------HHHHHHHHHHHHH
Confidence 466888899999999999999886 1 12 3467888999999988864 4567777777665
Q ss_pred CC-------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC------ChhHHHHHhhHHHHhcCCcH
Q psy11738 89 HE-------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD------DSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 89 ~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~ 155 (323)
.+ ..+.++..+|.++..+|++. +|.++|.+++++.+. ...++.++|.++...|++
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-- 238 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYD----------KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD-- 238 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH--
Confidence 43 34557788999999999998 899999999987542 245788999999998765
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
++|+.+|+++++ .+|.. +.+++.+|.+|..+|++++|+.++++++.+.+.......
T Consensus 239 ------------------~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 239 ------------------QMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred ------------------HHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999 78886 789999999999999999999999999998765432211
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSS---YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~---~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
... . .+...++. ..++ +.+|+.++++. ...|.. ...+..+|.+|...|++++|..+|++++++...
T Consensus 300 ~~~------~-~~l~~ly~--~~~~~~~~~~al~~~~~~-~~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 300 KEL------F-LFLQAVYK--ETVDERKIHDLLSYFEKK-NLHAYI-EACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHH------H-HHHHHHHS--SSCCHHHHHHHHHHHHHT-TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH------H-HHHHHHHh--CCCcHHHHHHHHHHHHhC-CChhHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 100 0 11111221 2445 88999988873 333444 567889999999999999999999999876433
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.81 E-value=9.2e-19 Score=151.24 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=198.5
Q ss_pred hHHHHHHhhhHHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 13 VSEEFLKKSDDLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
....++......+..|.+ ++|+.+..++ .+|++..++...+.+...++. . .+++++.++++++..+
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~--~---------~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN--R---------NLYDELDWCEEIALDN 99 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT--S---------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc--c---------cHHHHHHHHHHHHHHC
Confidence 335566666666777777 5799999987 599999999999999988873 1 4677999999999999
Q ss_pred CCcHHHHHHHHHHH----HHh---hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 90 EDHYAIHKWLAVIL----NEK---ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 90 p~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
|++..++.+.+.++ ... +++. +++.+++++++.+|.+..+|+..+.+....+.+
T Consensus 100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~----------~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~--------- 160 (306)
T 3dra_A 100 EKNYQIWNYRQLIIGQIMELNNNDFDPY----------REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH--------- 160 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTCCCTH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT---------
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---------
Confidence 99999999999999 555 3444 788999999999999999999999998888765
Q ss_pred HhhcCCCCCCHH--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC------HHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 163 AIFDTLPTSSYE--EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN------YEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 163 ~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+ +++.++.++++.+|.| ..+|.+.+.++...|+ ++++++++++++..+|.+.....
T Consensus 161 -----------~~~~EL~~~~~~i~~d~~N-~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~---- 224 (306)
T 3dra_A 161 -----------NDAKELSFVDKVIDTDLKN-NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN---- 224 (306)
T ss_dssp -----------TCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH----
T ss_pred -----------ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH----
Confidence 6 9999999999999999 4999999999999998 99999999999999999987643
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC-CCChhH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN-YPAVQE 309 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~ 309 (323)
++.....-.+ ...++....+.+++.++ |.. +.++..+|.+|...|+.++|+++|+++.+ ++|-..
T Consensus 225 -----y~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 225 -----YLLGIHERFD----RSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp -----HHHHHHHHTT----CCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred -----HHHHHHHhcC----CChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 2221111111 12445566777777776 766 68899999999999999999999999996 788754
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=6.9e-20 Score=142.35 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=107.3
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+-..+.++++++|+++.+++.+|.+++..|++ ++|+..|+++++++|++ +.+|+++|.
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~--------------------~eA~~~~~~al~~~P~~-~~~~~~lg~ 78 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI--------------------EEAEVFFRFLCIYDFYN-VDYIMGLAA 78 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 334468889999999999999999999988755 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|..+|++++|+.+|++++++ +|++ +.++++
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l------------------------------------------------~P~~-~~~~~~ 109 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFAL------------------------------------------------GKND-YTPVFH 109 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------------------------------------------------SSSC-CHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhh------------------------------------------------CCCC-cHHHHH
Confidence 999888888777777666554 6666 678899
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+|.+|..+|++++|+.+|++++++.|+++ +-++++.+|
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~---~~~~A~~ll 147 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK---LKIKAQSYL 147 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH---HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH---HHHHHHHHH
Confidence 99999999999999999999999998876 455555544
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=3.8e-18 Score=141.59 Aligned_cols=185 Identities=9% Similarity=-0.022 Sum_probs=151.1
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+..++.+|..+...|++. +|+..|+++++..|+++ .+++.+|.+++..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~----------~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~--------------- 57 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWR----------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL--------------- 57 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH---------------
T ss_pred CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH---------------
Confidence 4677899999999999999 89999999999999875 6899999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHH------------------cCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMR------------------LENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~y~~------------------~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|+++++.+|++.. .+++.+|.++.. .|++++|+..|+++++..|++...
T Consensus 58 -----~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 58 -----PLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp -----HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred -----HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999731 379999999987 579999999999999999998754
Q ss_pred hhh--hh----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 229 QCF--EI----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 229 ~~~--~~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
... .+ ..+......++..++. .|++++|+..|+++++..|+.. +.+++.+|.+|..+|++++|+.++++
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 133 TDATKRLVFLKDRLAKYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 321 00 0011111223333443 6899999999999999999862 25799999999999999999999999
Q ss_pred hhCCCChhH
Q psy11738 301 TKNYPAVQE 309 (323)
Q Consensus 301 al~~~~~~~ 309 (323)
+....|.+.
T Consensus 210 l~~~~~~~~ 218 (225)
T 2yhc_A 210 IAANSSNTL 218 (225)
T ss_dssp HHHCCSCCC
T ss_pred HHhhCCCch
Confidence 998887754
No 77
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=2e-19 Score=139.70 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
..+-.+-..++++++++|+++++++.+|.++...|++. +|+..|++++.++|+++.+|+.+|.++...|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE----------EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 34444566788999999999999999999999999999 89999999999999999999999999999875
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|+..
T Consensus 86 ~--------------------~~Ai~~~~~al~l~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 F--------------------QQAADLYAVAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp H--------------------HHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred H--------------------HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 5 99999999999999998 79999999999999999999999999999988753
No 78
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=3.2e-19 Score=134.39 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=106.4
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
++..++|+.++++..+|..+...|++. +|+++|+++++++|+++.+++.+|.++..+|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------- 63 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYP----------TAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------- 63 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------
Confidence 456799999999999999999999999 899999999999999999999999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|++...
T Consensus 64 ----------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 64 ----------QRALDDCDTCIRLDSKF-IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp ----------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ----------HHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999998 6999999999999999999999999999999998754
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=3.7e-18 Score=141.69 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=148.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
++..++..|..++..|+|++|+..++++ ..|.+ .++++.+|.+|...|+ +++|+..++++++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------------LPLAQAAIDRFIR 69 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHH
Confidence 4567899999999999999999999987 35654 5789999999999885 4679999999999
Q ss_pred CCCCcHH---HHHHHHHHHHHhhcc--------cchHHHHHhHHHHHHHHHHHHccCCCChhHH----------------
Q psy11738 88 QHEDHYA---IHKWLAVILNEKATL--------EGTKARIQQLETIKHHMNKAIELKPDDSTTL---------------- 140 (323)
Q Consensus 88 ~~p~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~---------------- 140 (323)
.+|+++. +++++|.++..++.. .......+...+|+..|+++++..|+++.++
T Consensus 70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9999875 789999998875411 0001112445599999999999999998765
Q ss_pred -HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 141 -FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 141 -~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
+.+|.+++..| +|++|+..|+++++..|++. +.+++.+|.+|.++|++++|+.++++
T Consensus 150 ~~~~a~~~~~~~--------------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 150 EYSVAEYYTERG--------------------AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--------------------cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34455555554 55999999999999999862 26799999999999999999999999
Q ss_pred HhCCCCCCchh
Q psy11738 218 TKNYPVKQDKD 228 (323)
Q Consensus 218 al~~~~~~~~~ 228 (323)
+....|++.+.
T Consensus 210 l~~~~~~~~~~ 220 (225)
T 2yhc_A 210 IAANSSNTLEH 220 (225)
T ss_dssp HHHCCSCCCCC
T ss_pred HHhhCCCchhh
Confidence 99998887653
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.2e-18 Score=138.91 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=140.5
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..+..+..|..++..|++++|+..++++ .+|+++.+++.+|.+|...|+ +++|+..+++++..+|
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-------------~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-------------FELAQELLATIPLEYQ 71 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-------------HHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHhhhccC
Confidence 3456789999999999999999999998 599999999999999998885 4779999999999999
Q ss_pred CcHHHHHHHHHHHH-HhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 91 DHYAIHKWLAVILN-EKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++..+...+.+.. ..+... .++..++++++++|+++.+++.+|.++...|++
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~---------------- 124 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAES----------PELKRLEQELAANPDNFELACELAVQYNQVGRD---------------- 124 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred -ChHHHHHHHHHHHHhhcccc----------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------------
Confidence 8877665554432 222222 467899999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|+++++++|++. ..++..+|.++..+|++++|+.+|++++.
T Consensus 125 ----~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 ----EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999841 35899999999999999999999999875
No 81
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=1.6e-17 Score=144.36 Aligned_cols=246 Identities=9% Similarity=-0.019 Sum_probs=196.5
Q ss_pred HHhhccHH-HHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 24 LFEEQQFE-EVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 24 ~~~~~~~~-~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
....|++. +|+.++..+ .+|++..+|...+.+...++.... ++.....+++++.+++.++..+|++..++.+.+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~---~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---PEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc---chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567776 689999887 699999999999999988875432 344556689999999999999999999999999
Q ss_pred HHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q psy11738 101 VILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 178 (323)
Q Consensus 101 ~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (323)
.++..++. +. +++.++.++++++|.|..+|...+.+....+.. +++++.
T Consensus 116 wlL~~l~~~~~~----------~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~-------------------~~eel~ 166 (331)
T 3dss_A 116 WLLSRLPEPNWA----------RELELCARFLEADERNFHCWDYRRFVAAQAAVA-------------------PAEELA 166 (331)
T ss_dssp HHHHHCSSCCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------------------HHHHHH
T ss_pred HHHhccCcccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-------------------HHHHHH
Confidence 99999885 44 788899999999999999999999988777642 389999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 179 YFLEAEKQHPLFYSQNVLMLGKTYMRL--------------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 179 ~~~~al~~~p~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++.++++.+|++ ..+|.+++.++..+ +.++++++++.+++.++|++.....+ .+.+.
T Consensus 167 ~~~~~I~~~p~N-~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y--------~r~ll 237 (331)
T 3dss_A 167 FTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY--------HRWLL 237 (331)
T ss_dssp HHHHHHHHCSCC-HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHH--------HHHHH
T ss_pred HHHHHHHHCCCC-HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHH
Confidence 999999999999 59999999999888 56899999999999999999876431 11111
Q ss_pred HHhhccC-----CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH---HhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 245 NAIFDTL-----PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM---RLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 245 ~~~~~~~-----~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
....+.. ..+.++++++.+.+++++.|++ ..++..++.+.. ..|..++...++.+.+++||-....
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 1110000 0146899999999999999997 554444433322 3678889999999999999986654
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.5e-18 Score=138.36 Aligned_cols=168 Identities=11% Similarity=-0.050 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|...+.++.+|.++...|+ +++|+..++++++++|+++.++..+|.++...|++. +|
T Consensus 3 ~~~~~~~~~~a~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~----------~A 59 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGE-------------HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE----------LA 59 (176)
T ss_dssp ---CTTHHHHHHHHHHTTC-------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH----------HH
Confidence 4445567788888888775 467999999999999999999999999999999998 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHH-hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFE-ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
+..|++++..+| ++..+..++.+... .+.. .+|+..|+++++++|++ +.+++.+|.+
T Consensus 60 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~--------------------~~a~~~~~~al~~~P~~-~~~~~~la~~ 117 (176)
T 2r5s_A 60 QELLATIPLEYQ-DNSYKSLIAKLELHQQAAE--------------------SPELKRLEQELAANPDN-FELACELAVQ 117 (176)
T ss_dssp HHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS--------------------CHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHhhhccC-ChHHHHHHHHHHHHhhccc--------------------chHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 999999999999 88776666654332 1111 46899999999999998 6999999999
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 281 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~l 281 (323)
+...|++++|+.+|+++++.+|... . +.++..+
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------------------------~-~~a~~~l 150 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQ----------------------------------------------D-GEVKKTF 150 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTT----------------------------------------------T-THHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccC----------------------------------------------h-HHHHHHH
Confidence 9999999999999999888766431 1 3457788
Q ss_pred HHHHHHhcCHHHHHHHHHHhh
Q psy11738 282 GKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al 302 (323)
|.++..+|+.++|+.+|++++
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 888888899988888888876
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=2.1e-18 Score=149.01 Aligned_cols=223 Identities=10% Similarity=-0.042 Sum_probs=163.5
Q ss_pred hhhHHHHHHh-hhHHHhhccHHHHHHHHHhC-C------CC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKK-SDDLFEEQQFEEVNKMLESS-E------YK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 11 ~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~~-~------~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
.+.+...+.+ +..+...|++++|+..+.++ . ++ ..+.++..+|.+|..+|+ +++|+.+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------~~~A~~~ 99 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------SVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-------------HHHHHHH
Confidence 3344444554 45566689999999999876 1 11 225678888888888875 4679999
Q ss_pred HHhhccCCCCc------HHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHH
Q psy11738 82 VYNALPQHEDH------YAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCF 148 (323)
Q Consensus 82 ~~~al~~~p~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~ 148 (323)
+++|+++.|.. +.++..+|.+|... |+++ +|+.+|++|+++.|.+ ..++..+|.++.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~----------~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA----------KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH----------HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999988764 45788899999985 9988 8999999999998865 456888999998
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS------QNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
..|++ ++|+.+|++++++.|++.. .+++++|.|+..+|++++|+.+|++++.++
T Consensus 170 ~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 170 LDGQY--------------------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HTTCH--------------------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HhCCH--------------------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88755 9999999999999988621 157899999999999999999999999999
Q ss_pred CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 223 VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
|........ .....++.. +...+.+++++|+..|.+++.++|.. ...+..+-..
T Consensus 230 p~~~~~~~~------~~l~~l~~~-~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~ 283 (292)
T 1qqe_A 230 PNFADSRES------NFLKSLIDA-VNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKES 283 (292)
T ss_dssp --------H------HHHHHHHHH-HHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHH
T ss_pred CCCCCcHHH------HHHHHHHHH-HHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHH
Confidence 987543211 011112222 22335688999999999999999976 4555444443
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=4.5e-18 Score=152.26 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=176.2
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCCCHHHH--HHH--HHHHHHhcccCCCCcHH-HHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKEDVEII--WRL--VRVKYNLATHSSSLSDA-DKKQLILS 77 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~--~~l--a~~y~~~~~~~~~~~~~-~~~~~~~~ 77 (323)
..+++.+...+...-..+..+++++|..+++.+ .-..+.+.+ +.+ .+....++........+ +....+.
T Consensus 6 ~~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~- 84 (383)
T 3ulq_A 6 VISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS- 84 (383)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH-
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchh-
Confidence 345667788888999999999999999998886 122455444 222 12222222221110000 0000000
Q ss_pred HHHHHHhhccCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc---CCC---ChhHHHHHhh
Q psy11738 78 AYFLVYNALPQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL---KPD---DSTTLFMLGM 145 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l---~p~---~~~~~~~lg~ 145 (323)
..+++ ++..|...+ .++..|.++...|++. +|+.+|++++++ .|+ .+.+++.+|.
T Consensus 85 --~~~~~-i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 151 (383)
T 3ulq_A 85 --DLLLE-IDKKQARLTGLLEYYFNFFRGMYELDQREYL----------SAIKFFKKAESKLIFVKDRIEKAEFFFKMSE 151 (383)
T ss_dssp --HHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHH
T ss_pred --hHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333 222333333 3344899999999998 899999999998 233 5578999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+++..|++ ++|+.+|++++++.+.. ...++.++|.+|..+|++++|+.+|++++
T Consensus 152 ~~~~~~~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 152 SYYYMKQT--------------------YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHTTCH--------------------HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--------------------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99998765 99999999999984332 13579999999999999999999999999
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-----hC-CcchhhhhHHHHHHHHHhcCHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QH-PLFYSQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-----~~-p~~~~~~~~~lg~~y~~~g~~~~ 293 (323)
.+.|....... .+.....++..+.. .|++++|+.+|.+++. .+ |.. +.++..+|.+|..+|++++
T Consensus 212 ~~~~~~~~~~~-----~~~~~~~lg~~y~~---~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 282 (383)
T 3ulq_A 212 SMAEAEKQPQL-----MGRTLYNIGLCKNS---QSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDK 282 (383)
T ss_dssp HHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHH-----HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHH
Confidence 88665432211 01111223333333 6899999999999999 46 666 7889999999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|..++++++++.+.
T Consensus 283 A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 283 AHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998543
No 85
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=2.4e-18 Score=129.53 Aligned_cols=118 Identities=8% Similarity=-0.022 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.+|+.++.+..+|.+|+..|+ +++|+.+|+++++++|.++.++..+|.++..+|++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~---------- 64 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGD-------------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ---------- 64 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------
T ss_pred HCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHH----------
Confidence 478889999999999998885 577999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+..|+++++++|+++.+++.+|.++..+|++ ++|+.+|+++++++|++ ..++..|+.
T Consensus 65 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~--------------------~~A~~~~~~al~l~P~~-~~a~~~l~~ 123 (126)
T 4gco_A 65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMREW--------------------SKAQRAYEDALQVDPSN-EEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHCcCC-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 699999987
Q ss_pred HH
Q psy11738 201 TY 202 (323)
Q Consensus 201 ~y 202 (323)
|+
T Consensus 124 ~l 125 (126)
T 4gco_A 124 CL 125 (126)
T ss_dssp HC
T ss_pred hc
Confidence 74
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=4.5e-17 Score=140.28 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=150.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|...+..+..|..++..|++++|+..++++ .+|+++++++.+|.+|...|+ +++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-------------~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-------------SEDAEAVLXTIPLQ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-------------HHHHHHHHTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-------------HHHHHHHHHhCchh
Confidence 566677899999999999999999999997 599999999999999999885 47799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+....+...+..+...++.. +|+..+.++++++|+++.+++.+|.++...|++
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~----------~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~--------------- 235 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADT----------PEIQQLQQQVAENPEDAALATQLALQLHQVGRN--------------- 235 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred hcchHHHHHHHHHHHHhhcccC----------ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH---------------
Confidence 9987777777777788888887 788899999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|.++++.+|++. ..++..+|.++..+|+.++|+..|++++.
T Consensus 236 -----~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 -----EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp -----HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999851 47899999999999999999999999875
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=2.5e-17 Score=155.18 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+++++|+..++++++++|+++.++..+|.++...|++. +|.+.|+++++++|+++.++..+|.++...|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT----------AGEMAVQRGLALHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999999999999998 89999999999999999999999999999876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ ++|+.+|+++++++|++ ..+++++|.+|...|++++|+.+|+++++++|.+.....
T Consensus 73 ~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-- 129 (568)
T 2vsy_A 73 H--------------------AEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA-- 129 (568)
T ss_dssp H--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred H--------------------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 5 99999999999999998 699999999999999999999999999999998754322
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
.++..+....+-+++++|+..|++++..+|+. ...+..++
T Consensus 130 ---------~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~ 169 (568)
T 2vsy_A 130 ---------QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA-VEPFAFLS 169 (568)
T ss_dssp ---------HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC-SCHHHHTT
T ss_pred ---------HHHHHHHHhhccccHHHHHHHHHHHHhcCCcc-cChHHHhC
Confidence 12222222111288999999999999999987 67777776
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=3.2e-17 Score=141.26 Aligned_cols=169 Identities=11% Similarity=0.012 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.+++.+..+|..+...|++. +|...|+++++++|+++.+++.+|.++...|++
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~---------------- 167 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYT----------DALPLLXDAWQLSNQNGEIGLLLAETLIALNRS---------------- 167 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----------------
T ss_pred CCchhhHHHHHHHHHhCCCHH----------HHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----------------
Confidence 555556666666666666655 555566666666666666666666666655443
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+..|++++..+|+. .......+..+...++.++|+..|++++..+|++..... .++..+..
T Consensus 168 ----~~A~~~l~~~~~~~p~~-~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~-----------~la~~l~~ 231 (287)
T 3qou_A 168 ----EDAEAVLXTIPLQDQDT-RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT-----------QLALQLHQ 231 (287)
T ss_dssp ----HHHHHHHTTSCGGGCSH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH
T ss_pred ----HHHHHHHHhCchhhcch-HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH-----------HHHHHHHH
Confidence 66666666666666643 344555555555666666666666666666665544321 11111111
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcch-hhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.|++++|+..|.+++..+|++. ..++..+|.+|..+|+.++|...|++++.
T Consensus 232 ---~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 232 ---VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4566666666666666666541 35788999999999999999999998863
No 89
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.3e-15 Score=140.80 Aligned_cols=248 Identities=16% Similarity=0.095 Sum_probs=151.6
Q ss_pred hhhhHHHHHHhhhHHHh----hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 10 VSKVSEEFLKKSDDLFE----EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
.+.++...+..|..++. .+++++|+..++++...+++++++.+|.+|..-..... ++++|+.+++++
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---------~~~~A~~~~~~a 105 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQ---------DYAQAVIWYKKA 105 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---------CHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---------CHHHHHHHHHHH
Confidence 34566777888888888 89999999999988445889999999999987211111 457799999999
Q ss_pred ccCCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
.+. .++.+++.+|.+|.. .+++. +|+.+|+++.+. +++.+++.||.+|......
T Consensus 106 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~----------~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~-------- 163 (490)
T 2xm6_A 106 ALK--GLPQAQQNLGVMYHEGNGVKVDKA----------ESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGV-------- 163 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS--------
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC--------
Confidence 875 578888999998877 55555 788888888764 5788899999887652100
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcch-
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDM- 236 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~- 236 (323)
.+++++|+.+|+++++. ++ +.+++.||.+|.. .+++++|+.+|+++....+ ... ...++.+
T Consensus 164 --------~~d~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a-~~~lg~~y 229 (490)
T 2xm6_A 164 --------TRDYVMAREWYSKAAEQ--GN-VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELG-QLHLADMY 229 (490)
T ss_dssp --------CCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-HHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHH-HHHHHHHH
Confidence 12335555555555443 22 3445555555554 4555555555555544321 100 0000000
Q ss_pred -------------------------hHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh--
Q psy11738 237 -------------------------PWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-- 288 (323)
Q Consensus 237 -------------------------~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-- 288 (323)
......++..+. +....+++++|+.+|+++.+.. + +.+++.||.+|...
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N-SDGQYYLAHLYDKGAE 306 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C-HHHHHHHHHHHHHCBT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCC
Confidence 001112222222 1222456677777777766543 3 45566777777666
Q ss_pred ---cCHHHHHHHHHHhhCCC
Q psy11738 289 ---ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 289 ---g~~~~A~~~~~~al~~~ 305 (323)
+++++|+.+|+++++..
T Consensus 307 g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHhcC
Confidence 67777777777776663
No 90
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=3.7e-16 Score=135.77 Aligned_cols=204 Identities=7% Similarity=-0.059 Sum_probs=167.3
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+.++.+++.++|++..++...+.++..++...+.........+++.+++.++..+|.++.+|+..+.+....+..
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~-- 124 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP-- 124 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC--
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc--
Confidence 569999999999999999999999999988876432222333455888999999999999999999999998877631
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC-HHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
.+++++.++.++++++|.| ..+|.+.+.++...|. ++++++++.+++..+|.+..+..
T Consensus 125 ----------------~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~---- 183 (331)
T 3dss_A 125 ----------------NWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH---- 183 (331)
T ss_dssp ----------------CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH----
T ss_pred ----------------cHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH----
Confidence 3599999999999999999 4999999999999999 69999999999999999987643
Q ss_pred chhHHHHHHHHHhh-c--------cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-----------cCHHHH
Q psy11738 235 DMPWYQRKIANAIF-D--------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-----------ENYEQA 294 (323)
Q Consensus 235 ~~~~~~~~~a~~~~-~--------~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-----------g~~~~A 294 (323)
.+.....-+ . ..+.+.++++++++.+++.++|++ ..+|+++..++... +.++++
T Consensus 184 -----~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 184 -----YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp -----HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred -----HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 222111111 0 111256899999999999999999 78898777666655 568999
Q ss_pred HHHHHHhhCCCChh
Q psy11738 295 AYYLEMTKNYPAVQ 308 (323)
Q Consensus 295 ~~~~~~al~~~~~~ 308 (323)
++++.+++++.|++
T Consensus 258 l~~~~elle~~pd~ 271 (331)
T 3dss_A 258 LESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhCccc
Confidence 99999999999984
No 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=2.3e-17 Score=127.78 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=111.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 79 YFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
-..+++++.++|+++.+++.+|.++...|++. +|+..|.+++.++|+++.+|+.+|.++...|++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----- 71 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE----------DAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----- 71 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-----
Confidence 34688999999999999999999999999999 899999999999999999999999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|.++.
T Consensus 72 ---------------~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 72 ---------------DLAIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp ---------------HHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred ---------------HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 99999999999999998 699999999999999999999999999999988754
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=6.4e-17 Score=152.43 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=133.0
Q ss_pred hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILN 104 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 104 (323)
.|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.+++++++++|+++.++..+|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-------------TTAGEMAVQRGLALHPGHPEAVARLGRVRW 68 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 47899999999987 599999999999999998885 567999999999999999999999999999
Q ss_pred HhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy11738 105 EKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE 184 (323)
Q Consensus 105 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 184 (323)
..|+++ +|.++|+++++++|+++.+++.+|.++...|++ ++|+.+|++++
T Consensus 69 ~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al 118 (568)
T 2vsy_A 69 TQQRHA----------EAAVLLQQASDAAPEHPGIALWLGHALEDAGQA--------------------EAAAAAYTRAH 118 (568)
T ss_dssp HTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHH
T ss_pred HCCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHH
Confidence 999998 899999999999999999999999999998765 99999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHc---CCHHHHHHHHHHHhCCCCCCchh
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRL---ENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+++|++ ..++..+|.++..+ |++++|+..|+++++.+|.+...
T Consensus 119 ~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 119 QLLPEE-PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HhCCCC-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 999998 69999999999999 99999999999999999987543
No 93
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.7e-15 Score=140.02 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=153.0
Q ss_pred hhHHHHHHhhhHHHh----hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 12 KVSEEFLKKSDDLFE----EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
..+...+..|..+.. .+++++|+..++++...+++.+++.+|.+|..-..... ++++|+.+++++++
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---------~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER---------NDAISAQWYRKSAT 215 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc---------CHHHHHHHHHHHHH
Confidence 345556666666666 67777777777776444567777777777765211111 23445555555544
Q ss_pred CCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCc----H
Q psy11738 88 QHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMP----W 155 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~----~ 155 (323)
. .++.+++.+|.++.. .+++. +|+.+|+++++. .++.+++.+|.++.. .++.. |
T Consensus 216 ~--~~~~a~~~lg~~y~~g~g~~~~~~----------~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 216 S--GDELGQLHLADMYYFGIGVTQDYT----------QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHcCCCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 3 234455555555544 33333 444444444432 334444444444443 33221 1
Q ss_pred HHHH-----------HHHHhhc--CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC---CHHHHHHHHHHHh
Q psy11738 156 YQRK-----------IANAIFD--TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE---NYEQAAYYLEMTK 219 (323)
Q Consensus 156 ~~~~-----------~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al 219 (323)
+.+. ++..... ....+++++|+.+|+++++.. + +.+++.||.+|...| ++++|+.+|++++
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--D-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--C-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 1100 0000000 001256799999999998863 3 478899999998866 8889999999998
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQA 294 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A 294 (323)
... +... .+. ++..++ +....+++++|+.+|+++.+.. + +.+++.||.+|.. .+++++|
T Consensus 359 ~~~--~~~a-~~~----------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 359 AKG--EKAA-QFN----------LGNALLQGKGVKKDEQQAAIWMRKAAEQG--L-SAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HTT--CHHH-HHH----------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HCC--CHHH-HHH----------HHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCCCCCHHHH
Confidence 762 2211 111 222222 2223578999999999999865 3 6789999999998 8999999
Q ss_pred HHHHHHhhCCCC
Q psy11738 295 AYYLEMTKNYPA 306 (323)
Q Consensus 295 ~~~~~~al~~~~ 306 (323)
+.+|++|++..|
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999999974
No 94
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=1.8e-15 Score=138.55 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=173.1
Q ss_pred HHHHHHhhhHHHhhccHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVN----KMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~----~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+...+..|..+...+.+++++ .+++.+ ...++.+++.+|.+|...|. ..++++|+.+++++.+..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~----------~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQ----------PEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC----------cccHHHHHHHHHHHHHCC
Confidence 344455566666666444443 334433 23344488899999988653 236788999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|..+..++.+|.+|....-.. .+..+|+.+|+++. |+++.+++.||.+++....
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~------~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~----------------- 263 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGT------PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE----------------- 263 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSS------CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----------------
T ss_pred CHHHHHHHHHHHHHhCCCCCC------CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----------------
Confidence 999998899999996542111 12238999999998 9999999999998553211
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-----CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-----NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
.+++++|+.+|+++.+.. + +.++++||.+|. .| ++++|+.+|+++. |.+..... .+ +
T Consensus 264 ~~d~~~A~~~~~~Aa~~g--~-~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~-~L----------g 325 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD--Q-PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY-YL----------G 325 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH-HH----------H
T ss_pred CCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH-HH----------H
Confidence 156799999999999754 5 689999999998 66 9999999999998 55544322 22 2
Q ss_pred HHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCC
Q psy11738 245 NAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 245 ~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~ 306 (323)
..+. +.....++++|+.+|+++.+. ++ +.+++.||.+|.. ..++.+|..+|++|.+..+
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARN--GQ-NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTT--TC-TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhh--Ch-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 1122 222346899999999999874 44 6789999999985 5699999999999999854
No 95
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=5.2e-17 Score=137.48 Aligned_cols=216 Identities=7% Similarity=-0.032 Sum_probs=173.1
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHH-------HHHHHHhcccCCCCcHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRL-------VRVKYNLATHSSSLSDADKKQLILSA 78 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l-------a~~y~~~~~~~~~~~~~~~~~~~~~A 78 (323)
++..+++.+.|..|.-+ ..+++..|...+.++ .+|..+++|..+ +.++..++.. .++
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~-------------~~a 66 (282)
T 4f3v_A 1 GHMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS-------------RRN 66 (282)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT-------------GGG
T ss_pred CCchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH-------------HHH
Confidence 35678899999999987 689999999999998 599999999988 6777766644 458
Q ss_pred HHHHHhhccCCCCcHHHHHH---------------------HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh
Q psy11738 79 YFLVYNALPQHEDHYAIHKW---------------------LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS 137 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 137 (323)
+..+.+++.+.|....+++. ++.++...|++. +|.+.|..++...|++.
T Consensus 67 ~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~----------eA~~~l~~~~~~~p~~~ 136 (282)
T 4f3v_A 67 FGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA----------DAMEALEAAPVAGSEHL 136 (282)
T ss_dssp TTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH----------HHHHHHTSSCCTTCHHH
T ss_pred HHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCchH
Confidence 99999999999987777666 667788888888 88888998888889888
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+.+.+|.+++..+++ ++|+.+|+++.+..+. ....+++++|.++..+|++++|+.+|+
T Consensus 137 -~~~~~a~l~~~~~r~--------------------~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERW--------------------TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp -HHHHHHHHHHHTTCH--------------------HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCH--------------------HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 889999888887655 9999999888775322 112478899999999999999999888
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
+++... . +|.....+++.+|.++..+|+.++|..
T Consensus 196 ~a~~g~-~---------------------------------------------~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 196 EANDSP-A---------------------------------------------GEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHTST-T---------------------------------------------TTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCC-C---------------------------------------------CccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 886421 0 143225678899999999999999999
Q ss_pred HHHHhhCCCChhHHHHHH
Q psy11738 297 YLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 297 ~~~~al~~~~~~~~~~~l 314 (323)
.|++++..+|..++...|
T Consensus 230 ~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 230 LLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHH
Confidence 999999998884444444
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=7.4e-17 Score=124.89 Aligned_cols=127 Identities=16% Similarity=0.093 Sum_probs=93.3
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|.+++.++|++..+++.+|.+++..|++ ++|+..|+++++++|++ +.+++.+|.+|..
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXY--------------------EDAHXVFQALCVLDHYD-SRFFLGLGACRQA 67 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHcCccc-HHHHHHHHHHHHH
Confidence 47788888888888888888888887654 88888888888888887 6888888888888
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.+|++++.+ +|++ +.+++.+|.+
T Consensus 68 ~g~~~~A~~~~~~al~l------------------------------------------------~p~~-~~~~~~lg~~ 98 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAVM------------------------------------------------DIXE-PRFPFHAAEC 98 (148)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------------------------------STTC-THHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc------------------------------------------------CCCC-chHHHHHHHH
Confidence 88777777766666554 5555 5667777777
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
|..+|++++|+.+|++++++.|. .+......++..++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 77777777777777777777554 33344555555444
No 97
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=1.7e-17 Score=124.98 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.+.++..+|..++..|++ ++|+.+|+++++++|++ +.++.++|.+|..+|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~--------------------~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDF--------------------EKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHH
Confidence 455678899999998755 99999999999999998 699999999999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
+++++++|.+.... +.. +.+++.+|.+|..+|++++|+
T Consensus 66 ~~al~~~~~~~~~~-----------------------------------------~~~-a~~~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 66 EKAVEVGRETRADY-----------------------------------------KLI-AKAMSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHTTCCH-----------------------------------------HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCcccchhh-----------------------------------------HHH-HHHHHHHHHHHHHcCCHHHHH
Confidence 99998876543210 011 467889999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHH
Q psy11738 296 YYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 296 ~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.+|+++++.+|+.+....|.+++
T Consensus 104 ~~~~kal~~~~~~~~~~~l~~le 126 (127)
T 4gcn_A 104 QWFHRSLSEFRDPELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCHHHHHHHHHhC
Confidence 99999999999887766666654
No 98
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=3.8e-17 Score=125.46 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=107.8
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
..++++++++|+++.+++.+|.++...|++. +|+..|.+++.++|+++.+|+.+|.++...|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------ 68 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWD----------DAQKIFQALCMLDHYDARYFLGLGACRQSLGLY------ 68 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH------
Confidence 5688999999999999999999999999999 899999999999999999999999999998765
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+..
T Consensus 69 --------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 69 --------------EQALQSYSYGALMDINE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp --------------HHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred --------------HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999998 699999999999999999999999999999987754
No 99
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=2.5e-18 Score=151.53 Aligned_cols=185 Identities=12% Similarity=-0.003 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHh----hccCCCCcHHHHHHHHHHHH------------HhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 73 QLILSAYFLVYN----ALPQHEDHYAIHKWLAVILN------------EKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 73 ~~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
..+++|+..++. ++.++|.. ++...|.... .+.++. +|++.|.+++..+|++
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~----------~A~~~~~~a~~~~p~~ 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFE----------KAKESWEMNSEEKLEQ 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEE----------CCCCGGGCCHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecc----------cccchhcCCHHHHHHH
Confidence 478899999999 99999986 4444443321 233344 5667788889999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--------------hHHHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--------------SQNVLMLGKTY 202 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~lg~~y 202 (323)
+.++..+|.+++..|++ ++|+.+|+++++++|++. ..+++++|.||
T Consensus 147 a~~~~~~g~~~~~~g~~--------------------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKY--------------------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 999999999999999972 38899999999
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 203 MRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
..+|++++|+.+|++++.++|.+..... .++.+++. .+++++|+..|++++.++|++ ..++..+|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~-----------~lg~~~~~---~g~~~~A~~~~~~al~l~P~~-~~a~~~l~ 271 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLS-----------RRGEAHLA---VNDFELARADFQKVLQLYPNN-KAAKTQLA 271 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCSSC-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHHH---CCCHHHHHHHHHHHHHHCCCC-HHHHHHHH
Confidence 9999999999999999999998764322 12222232 689999999999999999998 79999999
Q ss_pred HHHHHhcCHHHH-HHHHHHhhCC
Q psy11738 283 KTYMRLENYEQA-AYYLEMTKNY 304 (323)
Q Consensus 283 ~~y~~~g~~~~A-~~~~~~al~~ 304 (323)
.++..+|++++| ...|++.+..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 5677776644
No 100
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.70 E-value=1.2e-16 Score=142.94 Aligned_cols=259 Identities=12% Similarity=0.105 Sum_probs=173.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCCCHHHH--HHHHH--HHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKEDVEII--WRLVR--VKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~--~~la~--~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+++.+...+..--..+.++++++|..+++++ .-..+.+.+ +.+-. ....++...... .+.....+.+++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~-~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGK-TYGNRPTVTELL 85 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC---------CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCccc-ccccccchHHHH
Confidence 44556666666666668899999999988875 122355554 22222 222223333210 000011112233
Q ss_pred HHHHhhccCCCC--cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHhhHHHHhc
Q psy11738 80 FLVYNALPQHED--HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 80 ~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg~~~~~~~ 151 (323)
...+..-...+. ....+++.|..+...|++. +|+.+|.+|+++.+ ..+.+++.+|.+++..|
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYV----------EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC
Confidence 333221111011 1115667889999999998 89999999998843 24568899999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++ ++|+.++++++++.+.. .+.++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 156 ~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 156 QT--------------------HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp CH--------------------HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred Cc--------------------HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 65 99999999999874321 24578899999999999999999999999875433
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-----hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-----~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
..... .+.....++..+.. .|++++|+.+|.+++. .+|.. ..+++.+|.+|..+|++++|..++++
T Consensus 216 ~~~~~-----~~~~~~~lg~~y~~---~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 216 QNDRF-----IAISLLNIANSYDR---SGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp TCHHH-----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHH-----HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22111 01111223333332 6899999999999999 78877 78999999999999999999999999
Q ss_pred hhCCCCh
Q psy11738 301 TKNYPAV 307 (323)
Q Consensus 301 al~~~~~ 307 (323)
++++.+.
T Consensus 287 al~~~~~ 293 (378)
T 3q15_A 287 GLDHITA 293 (378)
T ss_dssp HHHHCCT
T ss_pred HHHHHHH
Confidence 9988443
No 101
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1.2e-15 Score=142.37 Aligned_cols=226 Identities=8% Similarity=-0.059 Sum_probs=181.0
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHH-------hcccCCCCcHHHHHHHHHHHHHHHHhhcc-CCCCcHHHHHHHH
Q psy11738 31 EEVNKMLESS--EYKEDVEIIWRLVRVKYN-------LATHSSSLSDADKKQLILSAYFLVYNALP-QHEDHYAIHKWLA 100 (323)
Q Consensus 31 ~~A~~~~~~~--~~~~~~~~~~~la~~y~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~ 100 (323)
+.|+..++++ ..|.++++|+.+|..+.. .|+... .....++|+..+++|++ +.|+++.++..+|
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~------a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN------AKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHH------HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhh------hhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4677778776 489999999999999876 454321 01123479999999998 8999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
.++...|+++ +|...|++++++.|.++ .+|..+|.++...|++ ++|+..
T Consensus 329 ~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~ 378 (530)
T 2ooe_A 329 DYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------------KSGRMI 378 (530)
T ss_dssp HHHHHTTCHH----------HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH--------------------HHHHHH
T ss_pred HHHHhcCCHH----------HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH--------------------HHHHHH
Confidence 9999999888 89999999999999986 6899999988877655 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHH-HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKT-YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
|+++++..|.. ...+...+.+ +...|++++|..+|+++++.+|++..... ..+... ...|++++
T Consensus 379 ~~~Al~~~~~~-~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~-----------~~~~~~---~~~g~~~~ 443 (530)
T 2ooe_A 379 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL-----------AYIDYL---SHLNEDNN 443 (530)
T ss_dssp HHHHHTCTTCC-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHH---TTTTCHHH
T ss_pred HHHHHhccCCc-hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH-----------HHHHHH---HhCCCHhh
Confidence 99999998876 4666655544 45799999999999999999998754321 111111 23689999
Q ss_pred HHHHHHHHHhhCCcc---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|...|++++...|.. ....|..........|+.+.+..++.++++..|+
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999986644 1236777788888899999999999999999884
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=4.2e-16 Score=128.09 Aligned_cols=193 Identities=11% Similarity=0.055 Sum_probs=151.8
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+|+.+|+++.+. .++.+++.+|.++...+++. +|+++|+++++. .++.+++.||.+|.. +..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~----------~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~--- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQ----------KAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQ--- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHTTS-STT---
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHH----------HHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCC---
Confidence 478899999886 68999999999999988888 899999999865 689999999998876 411
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCC--chhhh
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQ--DKDQC 230 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~--~~~~~ 230 (323)
..++++|+.+|+++.+ +++ +.++++||.+|.. .+++++|+.+|+++....|.+ ....
T Consensus 66 -------------~~~~~~A~~~~~~A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~- 128 (212)
T 3rjv_A 66 -------------QADYPQARQLAEKAVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ- 128 (212)
T ss_dssp -------------SCCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH-
T ss_pred -------------CCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH-
Confidence 1256999999999965 565 6999999999998 999999999999999987632 2211
Q ss_pred hhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-c-----CHHHHHHHHHHhhC
Q psy11738 231 FEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-E-----NYEQAAYYLEMTKN 303 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~ 303 (323)
+ .++..+. +....+++++|+.+|+++... |++ +.+++.||.+|... | ++++|+.+|++|.+
T Consensus 129 ~----------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 129 M----------LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp H----------HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 1222222 222357899999999999998 555 67899999999864 3 89999999999998
Q ss_pred CCChhHHHHHHHHH
Q psy11738 304 YPAVQEATKLLEKA 317 (323)
Q Consensus 304 ~~~~~~~~~~l~~~ 317 (323)
.. +.++...|.+.
T Consensus 197 ~g-~~~A~~~l~~l 209 (212)
T 3rjv_A 197 EG-FDTGCEEFDRI 209 (212)
T ss_dssp HT-CHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHh
Confidence 75 34455555544
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.2e-16 Score=149.87 Aligned_cols=203 Identities=8% Similarity=-0.035 Sum_probs=169.2
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..+.++++++|++..+|++.+.++..+++..+.........++++.++++++.+|++..+|+..|.+....+..
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~-- 123 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP-- 123 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC--
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc--
Confidence 569999999999999999999999999999987432222333455899999999999999999999999998877632
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
++++++.++.++++++|.+ ..+|.+.+.++...| .++++++++++++..+|.+..+..
T Consensus 124 ----------------~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~---- 182 (567)
T 1dce_A 124 ----------------NWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH---- 182 (567)
T ss_dssp ----------------CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH----
T ss_pred ----------------cHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH----
Confidence 4599999999999999999 599999999999999 999999999999999999976533
Q ss_pred chhHHHHHHHHHhh-cc--------CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH------------
Q psy11738 235 DMPWYQRKIANAIF-DT--------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ------------ 293 (323)
Q Consensus 235 ~~~~~~~~~a~~~~-~~--------~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~------------ 293 (323)
.+..+.... .. ...+.++++++++.+|+.++|++ ..+|++++.++...+++++
T Consensus 183 -----~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~-~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 183 -----YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp -----HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC-SHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred -----HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 333221111 11 12367999999999999999999 7999999999999998777
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 66778888888775
No 104
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.1e-15 Score=142.71 Aligned_cols=194 Identities=12% Similarity=0.022 Sum_probs=160.2
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHH-------hhcccchHHHHHhHHHHHHHHHHHHc-cCCCChhHHHHHhhHH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNE-------KATLEGTKARIQQLETIKHHMNKAIE-LKPDDSTTLFMLGMWC 147 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~~~~~~lg~~~ 147 (323)
++++..|++++..+|.++.++..+|.++.. .|++..+. ....+|+..|++|++ +.|++..+|..+|.++
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~---~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK---LFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH---HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh---hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 467889999999999999999999999876 56653110 011268899999998 8999999999999998
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...|++ ++|...|++++++.|.+...+|..+|.++.+.|++++|+..|++|++..|....
T Consensus 332 ~~~g~~--------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 332 ESRMKY--------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HHTTCH--------------------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HhcCCH--------------------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 887755 999999999999999873358999999999999999999999999999876432
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
... . .++. .+. ..|++++|...|+++++.+|++ +..|..+|.++...|+.++|...|++++...|
T Consensus 392 ~~~-~---~a~~-------~~~--~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 392 VYV-T---AALM-------EYY--CSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHH-H---HHHH-------HHH--HTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHH-H---HHHH-------HHH--HcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 211 0 0111 010 1578999999999999999998 79999999999999999999999999998754
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.69 E-value=3.3e-15 Score=130.40 Aligned_cols=248 Identities=8% Similarity=0.033 Sum_probs=183.5
Q ss_pred HHHHhhhHHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 16 EFLKKSDDLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.++.....++..+.+ ++|+.++.++ .+|++..++...+.+...++. .+++++.++++++..+|++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~------------~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK------------SLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHhCCCc
Confidence 344444444455544 6899999987 599999999999999988873 2567999999999999999
Q ss_pred HHHHHHHHHHHHHh-h-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 93 YAIHKWLAVILNEK-A-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 93 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
..++...+.++..+ + ++. +++++++++++.+|.|..+|...+.+....+.+.....
T Consensus 123 y~aW~hR~wlL~~l~~~~~~----------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~------------ 180 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPV----------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISE------------ 180 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCH----------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCH------------
T ss_pred HHHHHHHHHHHHHhcCCChH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccch------------
Confidence 99999999999988 6 555 78889999999999999999999998887765410000
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC-------HHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-------YEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKI 243 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 243 (323)
..+.+++.++.++++.+|.| ..+|.+.+.++..+++ ++++++++++++.++|.+.....+. +.+
T Consensus 181 ~~~~eELe~~~k~I~~dp~N-~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl--------r~L 251 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDGRN-NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL--------RGF 251 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH--------HHH
T ss_pred hhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH--------HHH
Confidence 01149999999999999999 5999999999999997 7999999999999999997664321 111
Q ss_pred HHHhhccCCCC----------------cHHHHHHHHHHHHhhC------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 244 ANAIFDTLPTS----------------SYEEALKYFLEAEKQH------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 244 a~~~~~~~~~~----------------~~~~Al~~~~~a~~~~------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
... .+.. .. ...+-...+...+... +.. +.++..|+.+|...|+.++|..+|+..
T Consensus 252 l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 252 LKH-FSLP-LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHH-TTCC-SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh-cCCC-cccccccccccccccccccchhHHHHHHHHHhcccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 100 0000 00 1222233333333222 344 578899999999999999999999998
Q ss_pred h-CCCChhH
Q psy11738 302 K-NYPAVQE 309 (323)
Q Consensus 302 l-~~~~~~~ 309 (323)
. +.+|-..
T Consensus 329 ~~~~dpir~ 337 (349)
T 3q7a_A 329 SSEYDQMRA 337 (349)
T ss_dssp HHTTCGGGH
T ss_pred HhhhChHHH
Confidence 6 6677643
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.1e-15 Score=139.92 Aligned_cols=69 Identities=12% Similarity=-0.047 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 31 EEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 31 ~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
++|+..++++.+. ++++++.+|.++...+... .+++++|+.+++++++. .++.+++.+|.+|...+...
T Consensus 55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~--------~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~ 123 (452)
T 3e4b_A 55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGAT--------EAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSF 123 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CC--------HHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCC--------CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCC
Confidence 4555555444222 4444555555443333211 24678899999999884 45568888888888776643
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=1.6e-16 Score=121.93 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=92.0
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|.++++++|++..+++.+|..++..|++ ++|+..|+++++++|++ +.+++.+|.+|..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 64 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKW--------------------DDAQKIFQALCMLDHYD-ARYFLGLGACRQS 64 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccH--------------------HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHH
Confidence 57888888999888999999888887655 89999999999999987 6888889988888
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.+|++++.+ +|++ +..++.+|.+
T Consensus 65 ~g~~~~A~~~~~~al~~------------------------------------------------~p~~-~~~~~~lg~~ 95 (142)
T 2xcb_A 65 LGLYEQALQSYSYGALM------------------------------------------------DINE-PRFPFHAAEC 95 (142)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------------------------------CTTC-THHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc------------------------------------------------CCCC-cHHHHHHHHH
Confidence 88887777777766655 4444 4556777777
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
|..+|++++|+.+|++++++.|. .+...+..++..++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 77777777777777777777553 23334444444433
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=4.1e-15 Score=128.41 Aligned_cols=192 Identities=9% Similarity=-0.010 Sum_probs=159.5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh--cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH----HH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKA--TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC----FE 149 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~----~~ 149 (323)
++|+..+.+++.++|++..+++..+.++..++ ++. +++.++++++.++|++..+|+..+.+. ..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~----------eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLY----------DELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHH----------HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHH----------HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999988 666 889999999999999999999999887 33
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH--HHHHHHHHHhCCCCCCch
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE--QAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~--~A~~~~~~al~~~~~~~~ 227 (323)
.+. .+++++++.++.++++++|.+ ..+|.+.+.++..+|+++ ++++++++++..+|.+..
T Consensus 120 l~~-----------------~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 120 NNN-----------------DFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp TTT-----------------CCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred ccc-----------------cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 310 134599999999999999999 599999999999999999 999999999999999876
Q ss_pred hhhhhhcchhHHHHHHHHHhhcc-CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH-HHHHHHHhhCCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDT-LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ-AAYYLEMTKNYP 305 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~ 305 (323)
+ |..+.....-++. .+...++++++++.+++.++|++ ..+|+.++.++...|+..+ ...++.++++++
T Consensus 182 A---------W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 182 A---------WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp H---------HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred H---------HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 5 3333322111110 00113899999999999999999 7999999999999999665 556888887765
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=2.8e-16 Score=134.87 Aligned_cols=199 Identities=10% Similarity=-0.030 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|.++..+..+|.++...|+ +++|+..+++++.++|+++.++..+|.++..+|++. +|
T Consensus 1 p~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~----------~A 57 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK-------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------QA 57 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred ChhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------HH
Confidence 4556667777777776664 355777777777777777777777777777777777 67
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 202 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y 202 (323)
+..++++++++|+++.+++.+|.++...|++ ++|+..|+++++++|++ ..++.......
T Consensus 58 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~p~~-~~~~~~~~~~~ 116 (281)
T 2c2l_A 58 LADCRRALELDGQSVKAHFFLGQCQLEMESY--------------------DEAIANLQRAYSLAKEQ-RLNFGDDIPSA 116 (281)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHT-TCCCCSHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCccc-hhhHHHHHHHH
Confidence 7777777777777777777777777776544 77777777777776654 22111111111
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 203 MRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
. +..++..+........|.+..... . +...+ .|++++|++.++++++++|++ ......++
T Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~i~~-~----------l~~l~-----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~ 176 (281)
T 2c2l_A 117 L---RIAKKKRWNSIEERRIHQESELHS-Y----------LTRLI-----AAERERELEECQRNHEGHEDD-GHIRAQQA 176 (281)
T ss_dssp H---HHHHHHHHHHHHHTCCCCCCHHHH-H----------HHHHH-----HHHHHHHHTTTSGGGTTTSCH-HHHTHHHH
T ss_pred H---HHHHHHHHHHHHHHHHhhhHHHHH-H----------HHHHH-----HHHHHHHHHHHHhhhccccch-hhhhhHHH
Confidence 1 112222232333333333332211 0 01111 367889999999999999987 56677777
Q ss_pred HHHHHh-cCHHHHHHHHHHhhCCC
Q psy11738 283 KTYMRL-ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 283 ~~y~~~-g~~~~A~~~~~~al~~~ 305 (323)
..+... +.+++|...|.++.+..
T Consensus 177 ~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 177 CIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 777766 77888999998887653
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=3.8e-16 Score=135.77 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhhccCC--------CCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-----
Q psy11738 73 QLILSAYFLVYNALPQH--------EDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD----- 136 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~--------p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~----- 136 (323)
+++++|..+++++.+.. |+... .+...|.++...|++. +|.++|.+++++.+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLE----------QAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCCHHH
Confidence 45666776666665432 22222 3344467777778777 8889999999987643
Q ss_pred -hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--c---hhHHHHHHHHHHHHcCCHHH
Q psy11738 137 -STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--F---YSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 137 -~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~---~~~~~~~lg~~y~~~g~~~~ 210 (323)
..++..+|.+|...|++ ++|+.+|++++++.+. + ...++.++|.+|.. |++++
T Consensus 75 ~a~~~~~lg~~~~~~g~~--------------------~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRM--------------------PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCG--------------------GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 44788889888887766 9999999999998432 1 24678999999999 99999
Q ss_pred HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHH
Q psy11738 211 AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTY 285 (323)
Q Consensus 211 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y 285 (323)
|+.+|++++.+.|....... .......++..+.. .|+|++|+.+|.+++.+.|+.. ...++.+|.++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~-----~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQ-----AAELIGKASRLLVR---QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 99999999998765432111 01112233333333 7899999999999999876541 23678899999
Q ss_pred HHhcCHHHHHHHHHHhhCCCCh
Q psy11738 286 MRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..+|++++|+.+|++++ ++|.
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHcCCHHHHHHHHHHHh-CCCC
Confidence 99999999999999999 8875
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=1.2e-15 Score=130.90 Aligned_cols=169 Identities=12% Similarity=-0.010 Sum_probs=137.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.++.++..+|..+...|++. +|+..|.++++++|+++.+++.+|.++...|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------------- 54 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------- 54 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------------
T ss_pred ChhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------------
Confidence 677889999999999999999 899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+..|+++++++|++ ..+++.+|.+|..+|++++|+.+|++++.++|++..... ...+...
T Consensus 55 ----~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~----~~~~~~~-------- 117 (281)
T 2c2l_A 55 ----EQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG----DDIPSAL-------- 117 (281)
T ss_dssp ----HHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC----SHHHHHH--------
T ss_pred ----HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH----HHHHHHH--------
Confidence 99999999999999998 699999999999999999999999999999887643211 1111111
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+..++..+........|.. ..+...++..+ .|++++|++.|+++++++|.+.
T Consensus 118 -----~~~~~~~~~~~~~~~~~~~-~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 118 -----RIAKKKRWNSIEERRIHQE-SELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp -----HHHHHHHHHHHHHTCCCCC-CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred -----HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 1223334444444556665 56667777765 7999999999999999988743
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=4e-15 Score=121.57 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHM 126 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (323)
-.++.+|.++...|+ +++|+..+++++ +| ++.++..+|.++...|++. +|+.+|
T Consensus 7 ~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~----------~A~~~~ 60 (213)
T 1hh8_A 7 ISLWNEGVLAADKKD-------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT----------EAEKAF 60 (213)
T ss_dssp HHHHHHHHHHHHTTC-------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhCC-------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH----------HHHHHH
Confidence 346778888887774 577999999996 44 7889999999999999999 899999
Q ss_pred HHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh--------------
Q psy11738 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-------------- 192 (323)
Q Consensus 127 ~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------- 192 (323)
.++++++|+++.+++.+|.++...|++ ++|+.+|++++++.|++ .
T Consensus 61 ~~al~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~ 119 (213)
T 1hh8_A 61 TRSINRDKHLAVAYFQRGMLYYQTEKY--------------------DLAIKDLKEALIQLRGN-QLIDYKILGLQFKLF 119 (213)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHTTTTC-SEEECGGGTBCCEEE
T ss_pred HHHHHhCccchHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHHhCCCc-cHHHHHHhccccCcc
Confidence 999999999999999999999998765 99999999999988875 4
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 193 --QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 193 --~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
.+++++|.+|..+|++++|+.+|++++.++|.+.
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8899999999999999999999999999998753
No 113
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.66 E-value=4.1e-15 Score=132.26 Aligned_cols=242 Identities=13% Similarity=0.026 Sum_probs=176.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC-H----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED-V----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~-~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
....+..+..++..|++++|+..+.++ ..|.+ . .++..+|.++...|+ +++|+..+++++
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al 80 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-------------LTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc-------------HHHHHHHHHHHH
Confidence 344577888889999999999998875 23332 2 245677777777774 466888888888
Q ss_pred cCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--------CCChhHHHHHhhHHHHhcC
Q psy11738 87 PQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--------PDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 87 ~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--------p~~~~~~~~lg~~~~~~~~ 152 (323)
.+.|.... ++..+|.++...|++. +|..++.+++++. |....++..+|.+++..|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQ----------TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 87665433 3577899999999998 8888899988875 3344567889999988876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch-
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK- 227 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~- 227 (323)
+ ++|+.++.+++++.|.. ...++..+|.++...|++++|..++++++.+.+....
T Consensus 151 ~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 151 L--------------------DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp H--------------------HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred H--------------------HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 5 99999999999987652 1357889999999999999999999999876433211
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch---hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
...... .....+.... ..|++++|...+.+++...|... ...+..+|.++...|++++|...+++++.+
T Consensus 211 ~~~~~~-----~~~~~~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 211 SDWISN-----ANKVRVIYWQ---MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHH-----HHHHHHHHHH---HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHH-----HHHHHHHHHH---HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 101000 0001111111 16889999999999988776421 124678899999999999999999998876
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.+
T Consensus 283 ~~ 284 (373)
T 1hz4_A 283 AR 284 (373)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=2.6e-15 Score=112.50 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHM 126 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (323)
++++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|...+
T Consensus 2 ~~~~~l~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD----------EAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHH
T ss_pred cHHHHHHHHHHHcCc-------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH----------HHHHHH
Confidence 467788888888774 467999999999999999999999999999999988 899999
Q ss_pred HHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 127 ~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++++...|.++.++..+|.++...|++ ++|+..|+++++..|++ ..++..+|.++...|
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDY--------------------DEAIEYYQKALELDPRS-AEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHc
Confidence 999999999999999999999887655 99999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHhCCCCC
Q psy11738 207 NYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 207 ~~~~A~~~~~~al~~~~~ 224 (323)
++++|+.++++++..+|.
T Consensus 118 ~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 118 DYDEAIEYYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHccCCC
Confidence 999999999999988775
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.64 E-value=1e-15 Score=129.82 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=143.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSA 78 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A 78 (323)
..|..+..+...|..++..|++++|+..++++ . .|..+.++..+|.+|...|++ ++|
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A 104 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY-------------KEA 104 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH-------------HHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH-------------HHH
Confidence 34667778889999999999999999999876 1 355677888999999888854 557
Q ss_pred HHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHH
Q psy11738 79 YFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFM 142 (323)
Q Consensus 79 ~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~ 142 (323)
+.++++++++ +|..+.++..+|.++...|++. +|..+|++++++ +|....++..
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE----------EVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7777777776 5888899999999999999998 899999999998 7777889999
Q ss_pred HhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------------------------------------
Q psy11738 143 LGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------------------------------------ 186 (323)
Q Consensus 143 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------------------ 186 (323)
+|.++...|++ ++|+.+|++++++
T Consensus 175 la~~~~~~g~~--------------------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T 3edt_B 175 LASCYLKQGKY--------------------QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234 (283)
T ss_dssp HHHHHHHHTCH--------------------HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence 99999998866 8888888888875
Q ss_pred -------------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 -------------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 -------------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|.. ..++..+|.+|..+|++++|+.+|++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 235 GEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333 467999999999999999999999999876
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.64 E-value=2e-15 Score=131.16 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=137.2
Q ss_pred HHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 51 RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH------YAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 51 ~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
+.+.+|...|+ +++|+.++.+++++.+.. +.++..+|.++..+|++. +|+.
T Consensus 41 ~a~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~----------~A~~ 97 (307)
T 2ifu_A 41 KAAVAFKNAKQ-------------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP----------EAVQ 97 (307)
T ss_dssp HHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG----------GGHH
T ss_pred HHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH----------HHHH
Confidence 34667776664 566888888888876543 557888999999999999 8888
Q ss_pred HHHHHHccCCCC------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhH
Q psy11738 125 HMNKAIELKPDD------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQ 193 (323)
Q Consensus 125 ~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 193 (323)
+|++++++.+.. ..++..+|.+|.. |++ ++|+.+|++++++.|.. ...
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--------------------~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--------------------SKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--------------------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--------------------HHHHHHHHHHHHHHHhCCChhHHHH
Confidence 999999885432 3467778877765 654 99999999999986542 136
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
++.++|.+|..+|++++|+.+|++++.+.|.+..... .......++...+. .|++++|+.+|++++ ++|.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~g~~~~~---~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT-----CYKKCIAQVLVQLH---RADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHh-CCCCC
Confidence 7999999999999999999999999998765542111 00111122222222 589999999999999 99976
Q ss_pred hhh-----hhHHHHHHHHHhcCHHHHHH
Q psy11738 274 YSQ-----NVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 274 ~~~-----~~~~lg~~y~~~g~~~~A~~ 296 (323)
.. ....++.++ ..|+.+.+..
T Consensus 228 -~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 -SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 32 244555555 5677655444
No 117
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.64 E-value=2.9e-15 Score=115.26 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
..++.+.|++|+..++++++++|++++++.++|.++..++++......++...+|+..|++||+++|++..+++++|.+|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHhcCC--cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 148 FEITDM--PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 148 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
...|.+ .|. .. .++|++|+.+|++|++++|++
T Consensus 91 ~~lg~l~P~~~-~a----------~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDET-EA----------KHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHCCCHH-HH----------HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhcccCcchh-hh----------hccHHHHHHHHHHHHHhCCCC
Confidence 987621 110 00 135699999999999999997
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=132.18 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=145.7
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
.-+|.++.++..+|.++...|++. +|..+|.+++++ .|....++..+|.++...|++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 85 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYE----------VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----- 85 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-----
T ss_pred CcchHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-----
Confidence 456888899999999999999998 888899999985 677788999999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-----CCC
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-----VKQ 225 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-----~~~ 225 (323)
++|+.+|++++++ +|.. ..++..+|.+|...|++++|+.++++++.+. +.+
T Consensus 86 ---------------~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 86 ---------------KDAANLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------------HHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999987 3443 5789999999999999999999999999874 222
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh--------CCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
... ......++..+.. .|++++|+.+|.+++.+ +|.. ..++..+|.+|...|++++|+.+
T Consensus 150 ~~~--------~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~ 217 (311)
T 3nf1_A 150 PDV--------AKQLNNLALLCQN---QGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAETL 217 (311)
T ss_dssp HHH--------HHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHH--------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 211 1112223333332 68999999999999998 6766 67899999999999999999999
Q ss_pred HHHhhCCCCh
Q psy11738 298 LEMTKNYPAV 307 (323)
Q Consensus 298 ~~~al~~~~~ 307 (323)
|++++++.|.
T Consensus 218 ~~~al~~~~~ 227 (311)
T 3nf1_A 218 YKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987554
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=2.1e-16 Score=139.24 Aligned_cols=151 Identities=18% Similarity=0.095 Sum_probs=134.4
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-----------
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH----------- 92 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 92 (323)
..+++++|+..+... ..|.++.++..+|.+|...|+ +++|+.+|+++++++|.+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-------------YKQALLQYKKIVSWLEYESSFSNEEAQKA 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 456677777777665 377888899999999988884 577999999999999999
Q ss_pred ----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 93 ----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.++.++|.++..+|++. +|+.+|+++++++|+++.+++.+|.++..+|++
T Consensus 192 ~~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------- 246 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLKLQAFS----------AAIESCNKALELDSNNEKGLSRRGEAHLAVNDF--------------- 246 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH---------------
Confidence 689999999999999999 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH-HHHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~ 220 (323)
++|+.+|+++++++|++ ..++..+|.++..+|++++| ...|++.+.
T Consensus 247 -----~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 247 -----ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----HHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 69999999999999999999 556777654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.2e-14 Score=118.74 Aligned_cols=156 Identities=6% Similarity=0.010 Sum_probs=135.4
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.....+..|..++..|++++|+..++++.+| ++.+++.+|.+|...|+ +++|+.+++++++++|.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKN-------------MTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccc
Confidence 4456788999999999999999999998644 78999999999999885 467999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh----------------hHHHHHhhHHHHhcCCcHH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS----------------TTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~----------------~~~~~lg~~~~~~~~~~~~ 156 (323)
+.++..+|.++...|++. +|+..|++++++.|++. .+++.+|.++...|++
T Consensus 71 ~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 137 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYD----------LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--- 137 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH---
T ss_pred hHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH---
Confidence 999999999999999999 89999999999999887 9999999999998765
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ .. +..+.|+..+++.....|..
T Consensus 138 -----------------~~A~~~~~~al~~~p~~-~~------------~~~~~a~~~~~~~~~~~~~~ 176 (213)
T 1hh8_A 138 -----------------KKAEEQLALATSMKSEP-RH------------SKIDKAMECVWKQKLYEPVV 176 (213)
T ss_dssp -----------------HHHHHHHHHHHTTCCSG-GG------------GHHHHHHHHHHTTCCCCCCC
T ss_pred -----------------HHHHHHHHHHHHcCccc-cc------------chHHHHHHHHHhcccccccc
Confidence 99999999999999986 22 45567777777666555443
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=8.3e-15 Score=109.70 Aligned_cols=118 Identities=21% Similarity=0.427 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+..|+++++.+|++ ..++..+|.++...|++++|+.++++++...|.+..... .++..+.. .
T Consensus 18 ~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~ 82 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY-----------NLGNAYYK---Q 82 (136)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHT---T
T ss_pred HHHHHHHHHHHHcCCcc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH-----------HHHHHHHH---h
Confidence 66666666666666654 455666666666666666666666666655554422110 11111111 4
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|++++|+..+.+++...|+. ...+..+|.+|...|++++|..+++++++++|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 56666777777777777776 677888899999999999999999998887775
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=4.7e-15 Score=121.77 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=142.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..++...+..|..++..+++++|+..++++...+++.+++.+|.+|.. +.... ++++|+.+++++++ +
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~---------~~~~A~~~~~~A~~--~ 82 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQA---------DYPQARQLAEKAVE--A 82 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSC---------CHHHHHHHHHHHHH--T
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCC---------CHHHHHHHHHHHHH--C
Confidence 466778899999999999999999999998666899999999999987 53322 46889999999965 6
Q ss_pred CcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 91 DHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.++.+++.+|.+|.. .+++. +|+++|+++++..| +++.+++.||.+|..-...
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~----------~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~----------- 141 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVA----------HAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG----------- 141 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHH----------HHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS-----------
T ss_pred CCHHHHHHHHHHHHcCCCCccCHH----------HHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC-----------
Confidence 799999999999976 44454 89999999999998 4699999999998772211
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhCC
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-E-----NYEQAAYYLEMTKNY 221 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~~ 221 (323)
.+++++|+.+|++++++ |++ +.++++||.+|..- | ++++|+.+|+++.+.
T Consensus 142 -----~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 142 -----PEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -----SCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 14569999999999998 555 58999999999865 3 899999999999876
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=1.7e-15 Score=120.32 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH-HHHh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW-CFEI 150 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~-~~~~ 150 (323)
.+.+++|+..++++++.+|.++.++..+|.++...|++. +|+.+|.++++++|+++.++..+|.+ +...
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS----------NSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 556778999999999999999999999999999999998 89999999999999999999999999 6666
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSY--EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
| ++ ++|+..|+++++++|++ ..+++.+|.+|...|++++|+.+|++++.++|.+..
T Consensus 93 ~--------------------~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 93 S--------------------QHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp T--------------------TCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred C--------------------CcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5 44 99999999999999998 699999999999999999999999999999998754
No 124
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.61 E-value=5.1e-14 Score=125.15 Aligned_cols=239 Identities=14% Similarity=0.042 Sum_probs=175.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS----EYKEDV----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.+...+..++..|++++|...+.++ ....+. .++..+|.++...|++ ++|+.++++++.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~-------------~~A~~~~~~al~ 121 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL-------------QTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHH
Confidence 4567788888999999999999876 122232 3356788888887754 557777777776
Q ss_pred CC--------CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-----hhHHHHHhhHHHHhcCCc
Q psy11738 88 QH--------EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-----STTLFMLGMWCFEITDMP 154 (323)
Q Consensus 88 ~~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-----~~~~~~lg~~~~~~~~~~ 154 (323)
+. |....++..+|.++...|+++ +|..++.+++.+.|.. ..++..+|.++...|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~- 190 (373)
T 1hz4_A 122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLD----------EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL- 190 (373)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH-
T ss_pred HHHHhccccCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH-
Confidence 54 445667788999999999999 8999999999998763 34678889988888765
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhH--HH--HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQ--NV--LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~--~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+.++++++.+.+. .... .. ..++.++...|++++|..++++++...|.....
T Consensus 191 -------------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 191 -------------------DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred -------------------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 9999999999987332 2111 11 134566889999999999999999877653211
Q ss_pred hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 229 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.... ...++..+.. .|++++|+..+.+++...+. .....+..+|.++...|++++|..++++++.
T Consensus 252 ~~~~-------~~~la~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQ-------WRNIARAQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHH-------HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHH-------HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1000 1122333332 68999999999999887543 1124678899999999999999999999998
Q ss_pred CCCh
Q psy11738 304 YPAV 307 (323)
Q Consensus 304 ~~~~ 307 (323)
+.+.
T Consensus 322 ~~~~ 325 (373)
T 1hz4_A 322 LANR 325 (373)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7553
No 125
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.61 E-value=2.5e-15 Score=115.87 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=94.7
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-------ch----hHHHHHHHHHHHHc
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-------FY----SQNVLMLGKTYMRL 205 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~----~~~~~~lg~~y~~~ 205 (323)
...+..+|..++..|++ ++|+..|+++++++|+ +. +.+|.++|.++..+
T Consensus 11 a~~~~~~G~~l~~~g~~--------------------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEY--------------------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC
Confidence 34567888888887655 9999999999999999 31 13899999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh----HHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV----LML 281 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~----~~l 281 (323)
|++++|+.+|++++. .|.++.+++|++ ..+| +++
T Consensus 71 gr~~eAl~~~~kAL~-----------------------------------------l~n~~~e~~pd~-~~A~~~~~~~r 108 (159)
T 2hr2_A 71 RSFDEALHSADKALH-----------------------------------------YFNRRGELNQDE-GKLWISAVYSR 108 (159)
T ss_dssp TCHHHHHHHHHHHHH-----------------------------------------HHHHHCCTTSTH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------hhhccccCCCch-HHHHHHHHHhH
Confidence 999999998876643 366677889988 7899 999
Q ss_pred HHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 282 GKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
|.++..+|++++|+.+|++++++.|++.+
T Consensus 109 G~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 109 ALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999888443
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=1.2e-14 Score=125.34 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=131.8
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH------HHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT------LFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~------~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
|.....+...+..+...|++. +|.+.+.++++..|..... ++.+|.++...|
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~----------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 129 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYK----------EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------ 129 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS------------
T ss_pred hhHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC------------
Confidence 344445556677777788887 8999999999998876543 445555555544
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC---CCCCchhhhhhhcc
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY---PVKQDKDQCFEITD 235 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~ 235 (323)
+|++|+.+|++++++.+.. ...++.++|.+|..+|++++|+.+|++++.+ .|.+.......
T Consensus 130 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~--- 198 (293)
T 2qfc_A 130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV--- 198 (293)
T ss_dssp --------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH---
T ss_pred --------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH---
Confidence 5599999999999874432 1357999999999999999999999999944 34332111011
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHHHHhcCHHHH-HHHHHHhhCCCChhH
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPAVQE 309 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~~~~ 309 (323)
...++..++. .|+|++|+.+|.+++.+.++. .+.+++.+|.+|..+|++++| ..+|++|+.+.....
T Consensus 199 ----~~nlg~~y~~---~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 199 ----RYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp ----HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHhHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 1123333333 789999999999999886531 146789999999999999999 888999998754433
Q ss_pred HH
Q psy11738 310 AT 311 (323)
Q Consensus 310 ~~ 311 (323)
..
T Consensus 272 ~~ 273 (293)
T 2qfc_A 272 MH 273 (293)
T ss_dssp CH
T ss_pred cH
Confidence 33
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=1.8e-15 Score=113.81 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+.+.++..+|..+...|++. +|+++|++|++++|+++.++.++|.+++.+|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~----------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------------- 58 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFE----------KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF----------------- 58 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred HHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-----------------
Confidence 45667889999999999999 999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY------SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
++|+.+|+++++++|++. ..++.++|.+|..+|++++|+++|++++..+|+
T Consensus 59 ---~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 59 ---AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999988752 247899999999999999999999999998775
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.3e-15 Score=111.18 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=96.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|..+..+..+|..+...|++. +|+..|.++++++|+++.++..+|.++...|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---------------- 54 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWP----------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF---------------- 54 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred CchHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------------
Confidence 556788999999999999999 899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++
T Consensus 55 ----~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 55 ----PEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999998 6999999999999999999999999999998
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.3e-15 Score=109.91 Aligned_cols=119 Identities=12% Similarity=-0.021 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|..++.+..+|.++...|+ +++|+.+|+++++++|+++.++..+|.++..+|++. +|
T Consensus 1 p~~a~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~----------~A 57 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD-------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP----------EA 57 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CchHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHH----------HH
Confidence 3456788889999988885 567999999999999999999999999999999999 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC------CCchhHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH------PLFYSQNVL 196 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 196 (323)
+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++ |++ ..++.
T Consensus 58 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~p~~~~~p~~-~~~~~ 116 (126)
T 3upv_A 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEY--------------------ASALETLDAARTKDAEVNNGSSA-REIDQ 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHHHTTTTH-HHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH--------------------HHHHHHHHHHHHhCcccCCchhH-HHHHH
Confidence 9999999999999999999999999998765 99999999999999 887 68888
Q ss_pred HHHHHHHHc
Q psy11738 197 MLGKTYMRL 205 (323)
Q Consensus 197 ~lg~~y~~~ 205 (323)
.++.+...+
T Consensus 117 ~l~~~~~~l 125 (126)
T 3upv_A 117 LYYKASQQR 125 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 888776543
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.59 E-value=2e-14 Score=112.21 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
+..++.+|.++...|+ +++|+.+++++++++|.++.++..+|.++...|++. +|+..
T Consensus 13 ~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKD-------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHH
T ss_pred HHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH----------HHHHH
Confidence 5667778888877774 577999999999999999999999999999999998 89999
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH--HHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG--KTYM 203 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg--~~y~ 203 (323)
+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..++ ..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKF--------------------RAALRDYETVVKVKPHD-KDAKMKYQECNKIV 128 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999998765 99999999999999997 57775554 4488
Q ss_pred HcCCHHHHHHHHHHHhCC
Q psy11738 204 RLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~ 221 (323)
..|++++|+.+++++..+
T Consensus 129 ~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 129 KQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHH
Confidence 999999999999987654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=4.2e-14 Score=121.85 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=133.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH------HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV------EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~------~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
++....++..+..++..|+|++|+..+.++ ..+... ..++.+|.+|...| .+++|+.++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~A~~~~ 138 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-------------DYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-------------CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-------------CHHHHHHHH
Confidence 455566788999999999999999999875 333333 22344555555444 457799999
Q ss_pred HhhccCCCCc------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHH---ccCCCCh----hHHHHHhhHHHH
Q psy11738 83 YNALPQHEDH------YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI---ELKPDDS----TTLFMLGMWCFE 149 (323)
Q Consensus 83 ~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---~l~p~~~----~~~~~lg~~~~~ 149 (323)
++++++.+.. ..++..+|.+|...|+++ +|..+|++++ +..|++. .+++++|.++..
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 9999876554 568899999999999999 8999999999 5566643 588999999999
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHH-HHHHHHHhCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNY 221 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~ 221 (323)
.|++ ++|+.+|++++++.++ ....+++++|.+|..+|++++| ..+|++|+.+
T Consensus 209 ~~~y--------------------~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRY--------------------EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCH--------------------HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhhH--------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 8755 9999999999987432 1247899999999999999999 8889999875
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=6.9e-15 Score=109.63 Aligned_cols=102 Identities=13% Similarity=-0.053 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
..++.+|..+...|++. +|+..|+++++++|+++.+|+.+|.++...|++
T Consensus 18 ~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------------------- 67 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-------------------- 67 (121)
T ss_dssp SCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------
T ss_pred hhHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------
Confidence 34688899999999998 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|++ +.+++.+|.+|...|++++|+.+|+++++++|.+.
T Consensus 68 ~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 68 GLAIIALNHARMLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999998 69999999999999999999999999999998753
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=9.8e-15 Score=114.59 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=103.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..++.++..++.+|.++...|++. +|+.+|.++++++|+++.+++.+|.+++..|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------- 61 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYS----------KAIDLYTQALSIAPANPIYLSNRAAAYSASGQH------------- 61 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------------
T ss_pred chhhhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-------------
Confidence 346778899999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+.+|+++++++|++ ..+++++|.+|..+|++++|+.+|++++.++|++...
T Consensus 62 -------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 62 -------EKAAEDAELATVVDPKY-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp -------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred -------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999998 7999999999999999999999999999999998763
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-14 Score=106.94 Aligned_cols=122 Identities=9% Similarity=-0.021 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++..++.+|.++...|++ ++|+.+++++++.+|.++.++..+|.++...+++. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~----------~ 68 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDY-------------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ----------L 68 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCS-------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHH----------H
T ss_pred CcccHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHH----------H
Confidence 567788888888888888755 55899999999999988888888999988888888 7
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+.+++++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..++.+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~l~~~ 127 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDY--------------------TKAMDVYQKALDLDSSC-KEAADGYQRC 127 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCGGG-THHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 88889999999999999999999888887655 89999999999998887 6888888888
Q ss_pred HHHcCC
Q psy11738 202 YMRLEN 207 (323)
Q Consensus 202 y~~~g~ 207 (323)
+..+|+
T Consensus 128 ~~~~~~ 133 (133)
T 2lni_A 128 MMAQYN 133 (133)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 887764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=1e-14 Score=115.86 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
++|+..|.+++..+|++ ..+++.+|.+|...|++++|+.+|++++++.|.+.
T Consensus 98 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 56666666666667776 67788888888888888888888888888877643
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=4.4e-14 Score=121.70 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHH------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HH
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAI------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TL 140 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~ 140 (323)
+++++|+..++++++..|.++.. +..+|.++...+++. +|+.+|.+++.+.+.... ++
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE----------YCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHH----------HHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHH----------HHHHHHHHHHHHhcccccHHHHHHHH
Confidence 45788999999999988877663 224566666666666 899999999997665433 68
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+|.+|...|++ ++|+.+|+++++. ++.....+++++|.+|..+|++++|+.+
T Consensus 159 ~~lg~~y~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 159 NAIANIYAENGYL--------------------KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999999988765 9999999999953 2222246799999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC-HHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-YEQ 293 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~-~~~ 293 (323)
+++++.+.+... ..+.. +.+++.+|.+|..+|+ +++
T Consensus 219 ~~~al~~~~~~~------------------------------------------~~~~~-~~~~~~lg~~~~~~g~~~~~ 255 (293)
T 3u3w_A 219 VNKAIEISCRIN------------------------------------------SMALI-GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHTT------------------------------------------BCTTH-HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcC------------------------------------------cHHHH-HHHHHHHHHHHHHhCCcHHH
Confidence 999987632211 01222 5778999999999995 699
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|++|+.+...
T Consensus 256 A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 256 IEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977543
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.56 E-value=1.8e-14 Score=113.10 Aligned_cols=117 Identities=13% Similarity=0.023 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.+.+++.++.+|.++...|+ +++|+.+|+++++++|+++.++..+|.++..+|++. +
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~----------~ 63 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE----------K 63 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred hhhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH----------H
Confidence 56678899999999998885 567999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+.+|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..+++..+..
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~~l~ 122 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMADY--------------------KGAKEAYEKGIEAEGNG-GSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 99999999999999999999999999998765 99999999999999998 5766666655
Q ss_pred H
Q psy11738 202 Y 202 (323)
Q Consensus 202 y 202 (323)
.
T Consensus 123 ~ 123 (164)
T 3sz7_A 123 T 123 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.55 E-value=3.3e-14 Score=109.32 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=87.7
Q ss_pred HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 113 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
.+++....+|++.++++++++|+++.+|.++|.++...+.+..-...+. .+++|+..|+++++++|++ .
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------~~~eAi~~le~AL~ldP~~-~ 80 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ----------MIQEAITKFEEALLIDPKK-D 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------HHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh----------HHHHHHHHHHHHHHhCcCc-H
Confidence 3566677799999999999999999999999999998875532222221 2489999999999999998 7
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhCCCCCCc
Q psy11738 193 QNVLMLGKTYMRLE-----------NYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 193 ~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~~~ 226 (323)
.+++++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999863
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=2.3e-14 Score=106.84 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
+|.++..++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~ 64 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVEN-------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA----------G 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred chhhhHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchH----------H
Confidence 45567778888888887774 466899999999999999999999999998888888 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+..+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..+|.+
T Consensus 65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~l~~~ 123 (131)
T 2vyi_A 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKH--------------------VEAVAYYKKALELDPDN-ETYKSNLKIA 123 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhcCccc-hHHHHHHHHH
Confidence 88889999999999999999999988887655 99999999999999987 6888889999
Q ss_pred HHHcCCH
Q psy11738 202 YMRLENY 208 (323)
Q Consensus 202 y~~~g~~ 208 (323)
+..+|++
T Consensus 124 ~~~~~~~ 130 (131)
T 2vyi_A 124 ELKLREA 130 (131)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9888875
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.3e-13 Score=107.58 Aligned_cols=104 Identities=14% Similarity=0.017 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+..+|.++...|++. +|...|.++++++|+++.++..+|.++...|++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~------------------ 63 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYE----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY------------------ 63 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH------------------
Confidence 3455666777777777776 677777777777777777777777777776544
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|++ +.+++.+|.++..+|++++|+.+|++++.++|.+.
T Consensus 64 --~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 64 --GYALGDATRAIELDKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp --HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred --HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 77777777777777776 57777777777777777777777777766655543
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.55 E-value=1.4e-13 Score=120.12 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=148.9
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh-c-C
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI-T-D 152 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~-~ 152 (323)
++|+.++.+++.++|++..++...+.++..++. +. +++..+++++..+|++..+|+..+.+.... + +
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~----------eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLE----------DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC
Confidence 569999999999999999999999999999884 55 888999999999999999999999998877 5 4
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH--------HHHHHHHHHhCCCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE--------QAAYYLEMTKNYPVK 224 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~~~ 224 (323)
+ ++++.++.++++++|.+ ..+|...+.++...|.++ ++++++++++..+|.
T Consensus 141 ~--------------------~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 141 P--------------------VSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp C--------------------HHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred h--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 4 89999999999999999 599999999999999988 999999999999999
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+..+ |..+.....-.+. .....++++++++.+++.++|++ ..+|+++..++...|+.
T Consensus 200 N~SA---------W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 200 NNSA---------WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHH---------HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCC
T ss_pred CHHH---------HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCC
Confidence 8765 3333322111110 01123799999999999999999 79999999999888775
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=1.6e-14 Score=111.30 Aligned_cols=105 Identities=10% Similarity=-0.092 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-------Chh-----HHHHHhhHHHHhcCCcHHHHH
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-------DST-----TLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.+..+...|..+...|+++ +|+..|++||+++|+ +.. +|.++|.++..+|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~e----------eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------ 73 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYD----------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH------
Confidence 3456788899999999999 899999999999999 443 999999999988755
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhc-------CCCchhHHH----HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQ-------HPLFYSQNV----LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|.+++++ +|++ ..+| +++|.++..+|++++|+.+|+++++++|.+..
T Consensus 74 --------------~eAl~~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 74 --------------DEALHSADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp --------------HHHHHHHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred --------------HHHHHHHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999 9997 7999 99999999999999999999999999998864
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=103.60 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
..|.++.++..+|.++...+++. +|+..|+++++++|+++.++..+|.++...+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-------------- 66 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYP----------QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-------------- 66 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSH----------HHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH--------------
T ss_pred cCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH--------------
Confidence 34566666677777777777666 666677777777777777777777666655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++|+.+|+++++++|++ ..+++.+|.+|...|++++|+.+|++++.++|
T Consensus 67 ------~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 67 ------QLALKDCEECIQLEPTF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp ------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred ------HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 77777777777777765 46667777776666666666666665555443
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=5.8e-14 Score=120.97 Aligned_cols=169 Identities=12% Similarity=0.034 Sum_probs=130.2
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHH------HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEI------IWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~------~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
.+....+...+..++..|+|++|+..++++ ..+..++. +..+|.+|...+ .+++|+.++
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~Ai~~~ 138 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-------------DYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-------------CHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-------------CHHHHHHHH
Confidence 334455667789999999999999999986 34444442 223444443333 567899999
Q ss_pred HhhccCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-------CCCChhHHHHHhhHHHH
Q psy11738 83 YNALPQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-------KPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 83 ~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-------~p~~~~~~~~lg~~~~~ 149 (323)
++++++.+...+ ++..+|.+|...|+++ +|..+|+++++. .|....+++++|.+|..
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 999987655433 6889999999999998 888899999842 23344578999999999
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCC-HHHHHHHHHHHhCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYP 222 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~ 222 (323)
.|++ ++|+.++++++++.+.. .+.+++++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 209 ~~~y--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRY--------------------EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCH--------------------HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHH--------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8755 99999999999885332 24789999999999994 799999999999864
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=5.4e-15 Score=135.61 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---------------hhH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---------------STT 139 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---------------~~~ 139 (323)
+++|+..++++++.+|.++.++..+|.++...+++. +|+.+|.+|++++|++ ..+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM----------QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 445788888888999999999999999999999999 8999999999999999 588
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+.++|.+++.++++ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|++++
T Consensus 320 ~~nla~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 320 FLNLAMCYLKLREY--------------------TKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH--------------------HHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88999998888655 99999999999999997 6899999999999999988888888888
Q ss_pred CCCCCCc
Q psy11738 220 NYPVKQD 226 (323)
Q Consensus 220 ~~~~~~~ 226 (323)
+++|++.
T Consensus 379 ~l~P~~~ 385 (457)
T 1kt0_A 379 EVNPQNK 385 (457)
T ss_dssp TTC----
T ss_pred HhCCCCH
Confidence 8877654
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.54 E-value=6.1e-15 Score=119.52 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=116.4
Q ss_pred hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-----------
Q psy11738 27 EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY----------- 93 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 93 (323)
.|.|++|...+... ..+..+..+..+|.++...|+ +++|+.+|++++++.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE-------------INEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 34555554444332 234456677788888877774 5779999999999999987
Q ss_pred -----HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 94 -----AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 94 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.++..+|.++..+|++. +|+.++.++++++|+++.+++.+|.++...|++
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--------------- 138 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYP----------KAIDHASKVLKIDKNNVKALYKLGVANMYFGFL--------------- 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH---------------
Confidence 89999999999999998 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~ 220 (323)
++|+.+|+++++++|++ ..++..++.++..+++..++. ..+.+.+.
T Consensus 139 -----~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 139 -----EEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -----HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC-----------
T ss_pred -----HHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998 699999999999999988877 44554443
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.5e-13 Score=128.86 Aligned_cols=175 Identities=8% Similarity=-0.051 Sum_probs=151.5
Q ss_pred HHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 23 DLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 23 ~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
.+...|++ ++|+..+.++ .+|++..+|...+.++..++.... ++.....+++++.+++++++.+|++..+|.+.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~---~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---PEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccc---hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33445666 5679999987 599999999999999999886432 34556678999999999999999999999999
Q ss_pred HHHHHHhh--cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 100 AVILNEKA--TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 100 ~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
+.++..++ ++. +++++++++++++|.|..+|...|.+....+. .+++++
T Consensus 114 ~w~l~~l~~~~~~----------~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el 164 (567)
T 1dce_A 114 CWLLSRLPEPNWA----------RELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEEL 164 (567)
T ss_dssp HHHHHTCSSCCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHH
T ss_pred HHHHHHcccccHH----------HHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHH
Confidence 99999998 446 78899999999999999999999999888761 349999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRL--------------ENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
.++.++++.+|++ ..+|.++|.++..+ +.++++++++.+|+.++|++.....
T Consensus 165 ~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 165 AFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp HHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred HHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999 59999999999886 6689999999999999999976544
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=4.9e-15 Score=120.09 Aligned_cols=167 Identities=14% Similarity=-0.004 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+...+.....++.++ ++.+.+.......+.....+..+|..++..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------------------ 54 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQG----------AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEI------------------ 54 (198)
T ss_dssp -----------------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred Ccccccchhhhhhhhhhcc----------ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCH------------------
Confidence 3444555666666677776 444455555555556677888999999888755
Q ss_pred CHHHHHHHHHHHHhcCCCchh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYS----------------QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~----------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
++|+..|++++++.|++ + .++.++|.+|..+|++++|+.++++++.++|.+.....
T Consensus 55 --~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----- 126 (198)
T 2fbn_A 55 --NEAIVKYKEALDFFIHT-EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY----- 126 (198)
T ss_dssp --HHHHHHHHHHHHTTTTC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-----
T ss_pred --HHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHH-----
Confidence 99999999999999987 4 78999999999999999999999999999998754321
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH-HHHHHhhCC
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKNY 304 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~ 304 (323)
.++.+++. .+++++|+..|++++.++|++ ..++..++.++..+++..++. ..|.+.+..
T Consensus 127 ------~lg~~~~~---~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 127 ------KLGVANMY---FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ------HHHHHHHH---HTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC------------
T ss_pred ------HHHHHHHH---cccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12222222 688999999999999999998 799999999999999998887 555555443
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=1.4e-12 Score=111.82 Aligned_cols=252 Identities=10% Similarity=-0.044 Sum_probs=189.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCC--cHHH-HHHH-----HHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSL--SDAD-KKQL-----ILSAYFLVYN 84 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~--~~~~-~~~~-----~~~A~~~~~~ 84 (323)
++..+| .+...|-.|+|..++.-..+....+.....+-+.++|..+|.+.... .+.. .... -..|+..+++
T Consensus 13 ~~~~lf-~ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~ 91 (310)
T 3mv2_B 13 DPMDYF-NIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELEN 91 (310)
T ss_dssp --CCTH-HHHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHH
T ss_pred CcHHHH-HHHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 334444 67788889999999998877644455567777889999999876432 1111 1111 1237788998
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.++..+....++..+|.++...|+++ +|++.+.+.+..+| ++.+++..++.++..+|+.
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~e----------eAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~--------- 152 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLD----------KSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV--------- 152 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH---------
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHH----------HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH---------
Confidence 88886666777789999999999999 89999999999997 8889999999999998766
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCC-----CchhHHHHHH--HHHHHHcC--CHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHP-----LFYSQNVLML--GKTYMRLE--NYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~l--g~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+.|.+.+++..+.+| ++ .....| |.+....| ++.+|...|+++....|....... .+
T Consensus 153 -----------d~A~k~l~~~~~~~~d~~~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l-Ll 218 (310)
T 3mv2_B 153 -----------STASTIFDNYTNAIEDTVSGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG-LL 218 (310)
T ss_dssp -----------HHHHHHHHHHHHHSCHHHHHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH-HH
T ss_pred -----------HHHHHHHHHHHhcCccccccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH-HH
Confidence 999999999999999 33 334444 44466667 999999999999888775111100 01
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh----------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~----------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. +.. ..|++++|...++.+... +|++ +.++.++..+...+|+ +|.+++.++.+
T Consensus 219 n-----------~~~---~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 219 N-----------LHL---QQRNIAEAQGIVELLLSDYYSVEQKENAVLYK-PTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp H-----------HHH---HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred H-----------HHH---HcCCHHHHHHHHHHHHHhcccccccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 111 168999999999988776 4777 7888899999999998 89999999999
Q ss_pred CCChhHHHHHHH
Q psy11738 304 YPAVQEATKLLE 315 (323)
Q Consensus 304 ~~~~~~~~~~l~ 315 (323)
..|++-...-+.
T Consensus 282 ~~P~hp~i~d~~ 293 (310)
T 3mv2_B 282 LDHEHAFIKHHQ 293 (310)
T ss_dssp TTCCCHHHHHHH
T ss_pred hCCCChHHHHHH
Confidence 988866554333
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=7.4e-14 Score=104.05 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...+++. +|+..|.+++..+|+++.++..+|.++...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 62 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFE----------AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------- 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred chhhhHHHHHHHHHHHHccCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------
Confidence 3445555555555555555555 555555555555555555555555555554433
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++|+..|.++++++|++ +.+++.+|.++...|++++|+.++++++.+
T Consensus 63 -----~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 63 -----AGAVQDCERAICIDPAY-SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555554 355555555555555555554444444433
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=4.1e-14 Score=102.60 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=101.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++|+++.++..+|.++...|++. +|+.+|+++++++|.++.+++.+|.++...|++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-------------- 56 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYT----------ESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-------------- 56 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH--------------
T ss_pred CCCCcHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH--------------
Confidence 47899999999999999999998 899999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHc-CCHHHHHHHHHHHhCCCCCCc
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRL-ENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|+ + ..++..+|.++... |++++|++++++++...|.+.
T Consensus 57 ------~~A~~~~~~a~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 57 ------EEAVDCYNYVINVIEDEYN-KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ------HHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ------HHHHHHHHHHHHhCcccch-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999 8 69999999999999 999999999999999988753
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=3.7e-14 Score=114.60 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc------cCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE------LKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~------l~p~~~~~~~~lg~ 145 (323)
.|++++|...++......+..+.++..+|.++...|++. +|..++.+++. ..|....++..+|.
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFD----------EARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456788888555554444478889999999999999998 88889999988 45556778999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CCC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ---HPL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
++...|++ ++|+.+|++++++ .|+ ....++.++|.++...|++++|+.++++++
T Consensus 75 ~~~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 75 VERMAGNW--------------------DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHTTCH--------------------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--------------------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99988765 9999999999998 342 224679999999999999999999999987
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.+.+... +|.....++..+|.+|...|++++|..+++
T Consensus 135 ~~~~~~~-------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 135 VYAQQAD-------------------------------------------DQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHTT-------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcc-------------------------------------------chHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6521110 111113456788899999999999999998
Q ss_pred HhhCCCChhH
Q psy11738 300 MTKNYPAVQE 309 (323)
Q Consensus 300 ~al~~~~~~~ 309 (323)
+++++.....
T Consensus 172 ~al~~~~~~~ 181 (203)
T 3gw4_A 172 RARDIFAELE 181 (203)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8887754433
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.52 E-value=6.3e-14 Score=106.05 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=99.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+|.++..+..+|.++...|++. +|+.+|.+++.++|+++.+++.+|.++...+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~------------- 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQP------------- 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------
T ss_pred CCccccHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-------------
Confidence 457889999999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ +.+++.+|.+|...|++++|+.+|++++.++|.+
T Consensus 60 -------~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 60 -------EQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 99999999999999998 6999999999999999999999999999998774
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=5.8e-15 Score=135.40 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=126.5
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-----------
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH----------- 92 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 92 (323)
..+++++|+..+... ..|..+..+..+|.+|+..|+ +++|+..|++|++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 312 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-------------YMQAVIQYGKIVSWLEMEYGLSEKESKAS 312 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence 345666777666655 366778888899999988774 577999999999999998
Q ss_pred ----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 93 ----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
..++.++|.++..++++. +|+.+|+++++++|+++.+++.+|.++..++++
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~--------------- 367 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYT----------KAVECCDKALGLDSANEKGLYRRGEAQLLMNEF--------------- 367 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH---------------
Confidence 689999999999999999 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTK 219 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al 219 (323)
++|+.+|+++++++|++ ..++..++.++..++++++|... |++.+
T Consensus 368 -----~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 368 -----ESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -----HHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 69999999999999999987754 44443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=1.9e-13 Score=103.38 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++..++.+|.++...|+ +++|+.++++++.++|.++.++..+|.++...|++. +
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~----------~ 61 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRK-------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------Q 61 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred ccccHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH----------H
Confidence 56789999999999999885 467999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVL 196 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~ 196 (323)
|+..+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|+ + ..+..
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~p~~~~~~~-~~~~~ 120 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESY--------------------DEAIANLQRAYSLAKEQRLNFG-DDIPS 120 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTCCCT-THHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHHChhHHHHHH-HHHHH
Confidence 99999999999999999999999999998765 9999999999999887 4 45566
Q ss_pred HHHHHHHHcC
Q psy11738 197 MLGKTYMRLE 206 (323)
Q Consensus 197 ~lg~~y~~~g 206 (323)
.+..+....+
T Consensus 121 ~l~~~~~~~~ 130 (137)
T 3q49_B 121 ALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665554443
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=1.2e-13 Score=108.10 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC------------------CCCcHHHHHHHHHHHHHh
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ------------------HEDHYAIHKWLAVILNEK 106 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~ 106 (323)
.+..+...|..++..|+ +++|+..|.+++.+ +|.++.++.++|.++..+
T Consensus 10 ~a~~~~~~G~~~~~~~~-------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 76 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKD-------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI 76 (162)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667778888887774 56799999999998 677778888888888888
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
|++. +|+..+.++++++|+++.+++.+|.++..+|++ ++|+.+|++++++
T Consensus 77 ~~~~----------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~--------------------~~A~~~~~~al~l 126 (162)
T 3rkv_A 77 GDLH----------EAEETSSEVLKREETNEKALFRRAKARIAAWKL--------------------DEAEEDLKLLLRN 126 (162)
T ss_dssp TCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHH
T ss_pred CcHH----------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH--------------------HHHHHHHHHHHhc
Confidence 8887 788888888888888888888888888887655 8888888888888
Q ss_pred CCCchhHHHHHHHHHHHHcCC
Q psy11738 187 HPLFYSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~ 207 (323)
+|++...+...++.+...+++
T Consensus 127 ~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp CGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 888722556666666554443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.48 E-value=7.9e-13 Score=97.49 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 42 YKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
+|.. +..+..+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---------- 60 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD---------- 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------
T ss_pred CccccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHH----------
Confidence 3444 7788899999988875 467999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+..+.+++.++|.++.++..+|.++...|++ ++|+.+|+++++++|++ +.++..+|.
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~ 119 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--------------------DEAIEYYQKALELDPNN-AEAKQNLGN 119 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 699999999
Q ss_pred HHHHcC
Q psy11738 201 TYMRLE 206 (323)
Q Consensus 201 ~y~~~g 206 (323)
++...|
T Consensus 120 ~~~~~g 125 (125)
T 1na0_A 120 AKQKQG 125 (125)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 987765
No 158
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.47 E-value=4.8e-12 Score=125.72 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=144.3
Q ss_pred hhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q psy11738 26 EEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNE 105 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 105 (323)
..|++++|++++.++ +.+++|..+|.++...|+ +++|+..|.+| +++..+..+|.++..
T Consensus 1088 ~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~-------------~kEAIdsYiKA-----dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGM-------------VKEAIDSYIKA-----DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCC-------------HHHHHHHHHhc-----CChHHHHHHHHHHHH
Confidence 568888888888874 567888899998888774 56688888775 677788888888888
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH-----------HHHHhhcCCCCCCHH
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK-----------IANAIFDTLPTSSYE 174 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 174 (323)
.|+++ +|+++|..|.+..|+. .+...+|.+|.+.+.+..+... ++..++ ..|+|+
T Consensus 1147 lGkyE----------EAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le---~eg~Ye 1212 (1630)
T 1xi4_A 1147 SGNWE----------ELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY---DEKMYD 1212 (1630)
T ss_pred cCCHH----------HHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHH---hcCCHH
Confidence 88888 7788888888777442 2222366555555544322211 222222 357889
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh--------hhhcchhH--------
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC--------FEITDMPW-------- 238 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~-------- 238 (323)
+|+.+|.++ ..|..+|.+|.++|++++|++++++|....+ ....+ +.++..+.
T Consensus 1213 eA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~a--Wkev~~acve~~Ef~LA~~cgl~Iiv~~d 1281 (1630)
T 1xi4_A 1213 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRT--WKEVCFACVDGKEFRLAQMCGLHIVVHAD 1281 (1630)
T ss_pred HHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHH--HHHHHHHHhhhhHHHHHHHHHHhhhcCHH
Confidence 999999996 3488899999999999999999999944311 00000 01110000
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH--HhcCHHHHHHHHHHhhCCCCh
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM--RLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~ 307 (323)
....+...+ ...|.|++|+..+++++.++|.. ...+..||.+|. +-++..++.+.|...+.++|-
T Consensus 1282 eLeeli~yY---e~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1282 ELEELINYY---QDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 000011111 12456666666666666666554 445555555554 345555666666666666553
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=3.5e-14 Score=130.84 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.+++++|+.+++++++++|+++.++..+|.++..+|++. +|++.++++++++|+++.+++.+|.++..+|
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999999999 8999999999999999999999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH--HHHcCCHHHHHHHHH-----------HH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT--YMRLENYEQAAYYLE-----------MT 218 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~--y~~~g~~~~A~~~~~-----------~a 218 (323)
++ ++|+++|+++++++|++ ..++..++.+ +...|++++|++.++ ++
T Consensus 89 ~~--------------------~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 147 (477)
T 1wao_1 89 KF--------------------RAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 147 (477)
T ss_dssp CH--------------------HHHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSS
T ss_pred CH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhh
Confidence 65 99999999999999998 6889999998 899999999999999 88
Q ss_pred hCCCCCCch
Q psy11738 219 KNYPVKQDK 227 (323)
Q Consensus 219 l~~~~~~~~ 227 (323)
+.++|....
T Consensus 148 l~~~~~~~~ 156 (477)
T 1wao_1 148 MTIEDEYSG 156 (477)
T ss_dssp CCCCTTCCS
T ss_pred ccccccccc
Confidence 888877643
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.47 E-value=1.9e-13 Score=101.73 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
.++.+|.++...|+ +++|+..++++++++|+++.+++.+|.++...|++. +|+..|+
T Consensus 19 ~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~----------~A~~~~~ 75 (121)
T 1hxi_A 19 NPMEEGLSMLKLAN-------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIALN 75 (121)
T ss_dssp CHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHHHH
T ss_pred hHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHH
Confidence 46778888888774 577999999999999999999999999999999998 8999999
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++++++|+++.+++.+|.++...|++ ++|+..|+++++++|++
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNA--------------------NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHC-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCcCC
Confidence 99999999999999999999998766 99999999999999986
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1.1e-12 Score=95.86 Aligned_cols=105 Identities=11% Similarity=0.017 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+..+|.++...|++. +|+..|++++..+|+++.++..+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------------------ 54 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNID----------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY------------------ 54 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH------------------
T ss_pred hHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH------------------
Confidence 5677889999999999998 899999999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++++|++ +.++..+|.++...|++++|+.++++++..+|.+..
T Consensus 55 --~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 55 --QKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp --HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred --HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999998 699999999999999999999999999999998754
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=1.8e-13 Score=107.11 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc------------------CCCChhHHHHHhhHHHHhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL------------------KPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+..+...|..+...|++. +|+.+|.+++.+ +|.+..++.++|.++..+|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~----------~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYK----------EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 4667788999999999998 899999999999 777778999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.++.++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+.
T Consensus 80 --------------------~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 80 --------------------HEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp --------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred --------------------HHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999998 79999999999999999999999999999999876
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=8.7e-13 Score=96.32 Aligned_cols=114 Identities=15% Similarity=0.014 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +|..
T Consensus 3 ~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN-------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQ----------KAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHH
T ss_pred hHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHH----------HHHH
Confidence 46778889999988775 567999999999999999999999999999999998 8999
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 202 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y 202 (323)
.+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +.++..++.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 116 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRF--------------------EEAKRTYEEGLKHEANN-PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence 99999999999999999999999998765 99999999999999998 68888888764
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=1.8e-12 Score=95.56 Aligned_cols=100 Identities=20% Similarity=0.331 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+.++..+|.++...|++. +|++.|.++++.+|+++.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~------------------- 59 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY------------------- 59 (125)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-------------------
Confidence 344444555555555444 444555555555555555555555555444333
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++|+.+|+++++++|++ +.++..+|.+|...|++++|+.++++++..+|
T Consensus 60 -~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 60 -DEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp -HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 55555555555555544 34455555555555554444444444444333
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.4e-13 Score=101.48 Aligned_cols=113 Identities=10% Similarity=-0.026 Sum_probs=104.1
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
++...+|.++..++.+|..+...|++. +|+.+|+++++++|++ ..++..+|.++...+++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~------- 81 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYG----------GALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY------- 81 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-------
Confidence 345677889999999999999999999 8999999999999998 89999999999988765
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+..
T Consensus 82 -------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 82 -------------DKAETEASKAIEKDGGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp -------------HHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred -------------HHHHHHHHHHHhhCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 99999999999999998 699999999999999999999999999999998754
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=3.4e-13 Score=97.70 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=80.9
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++|+++.+++.+|.+++..|++ ++|+.+|+++++++|++ ..+++.+|.++...|++++|
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY--------------------TESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH--------------------HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH--------------------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHH
Confidence 4678888888888888776654 88888888888888886 57888888888888888877
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-cC
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-EN 290 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g~ 290 (323)
+.+++++++.+|... . ..+++.+|.+|..+ |+
T Consensus 60 ~~~~~~a~~~~~~~~----------------------------------------------~-~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 60 VDCYNYVINVIEDEY----------------------------------------------N-KDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHHHHHHTSCCTT----------------------------------------------C-HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHhCcccc----------------------------------------------h-HHHHHHHHHHHHHHhCC
Confidence 777777766544300 3 45667777777777 77
Q ss_pred HHHHHHHHHHhhCCCCh
Q psy11738 291 YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 291 ~~~A~~~~~~al~~~~~ 307 (323)
+++|+.++++++...|.
T Consensus 93 ~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 93 EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHhhcccC
Confidence 77777777777777664
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.45 E-value=2.1e-14 Score=132.25 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=45.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+++|+++++++|+++.++..+|.++...|++ ++|+.+|+++++++|++ +.+++++|.
T Consensus 24 ~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~p~~-~~~~~~lg~ 82 (477)
T 1wao_1 24 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------GYALGDATRAIELDKKY-IKGYYRRAA 82 (477)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHSCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 555555555555555555555555555555433 55555555555555554 455555555
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
+|..+|++++|+.+|+++++++|
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555555555555544433
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.45 E-value=3.4e-13 Score=108.84 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred HHhhccHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc------CCCCcHHH
Q psy11738 24 LFEEQQFEEVNKMLESS-EYK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP------QHEDHYAI 95 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 95 (323)
++..|++++|...++.+ .+| ..+.++..+|.+|...|++ ++|+.++++++. ..|..+.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRF-------------DEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcH-------------HHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 46789999999933332 244 6788999999999998854 557777777777 56777888
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc---CCCC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL---KPDD----STTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l---~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+..+|.++...|++. +|.+++.+++.+ .|++ ..++..+|.++...|++
T Consensus 69 ~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--------------- 123 (203)
T 3gw4_A 69 LHQVGMVERMAGNWD----------AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL--------------- 123 (203)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH---------------
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH---------------
Confidence 999999999999998 888899999988 4433 45688899999988766
Q ss_pred CCCCHHHHHHHHHHHHhcCCC--c---hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPL--F---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~--~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+.++++++++.+. + ...++..+|.++...|++++|+.++++++.+.
T Consensus 124 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 124 -----AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999976321 1 12457899999999999999999999998863
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=2.2e-13 Score=101.58 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=96.3
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+..++.+|.+++..|++ ++|+.+|+++++.+|++ +.+++.+|.+|...|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDF--------------------DTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHH
Confidence 3456788899888887655 99999999999999997 68899999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
+++++...|.+... .+.. ..+++.+|.+|...|++++|
T Consensus 61 ~~~~~~~~~~~~~~-----------------------------------------~~~~-~~~~~~la~~~~~~~~~~~A 98 (131)
T 1elr_A 61 CEKAIEVGRENRED-----------------------------------------YRQI-AKAYARIGNSYFKEEKYKDA 98 (131)
T ss_dssp HHHHHHHHHHSTTC-----------------------------------------HHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhccccchh-----------------------------------------HHHH-HHHHHHHHHHHHHhccHHHH
Confidence 99988765433111 0011 35677888888888888888
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 295 AYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 295 ~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+.+|+++++++|+.+....+..+...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 99 IHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888888888887766666666665554
No 170
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.44 E-value=1.7e-11 Score=121.91 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=146.5
Q ss_pred hhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 21 SDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKY-NLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
|..+...|.|++|+.+|++...... + ..++. . .+++++|+++++++ +.+.+|+.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~--A----~~VLie~-------------i~nldrAiE~Aerv-----n~p~vWsqL 1111 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTS--A----VQVLIEH-------------IGNLDRAYEFAERC-----NEPAVWSQL 1111 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHH--H----HHHHHHH-------------HhhHHHHHHHHHhc-----CCHHHHHHH
Confidence 8888889999999999999742222 1 11221 3 34678899999875 568899999
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
|.++...|++. +|++.|.+| +++..+..+|.++...|++ ++|+++
T Consensus 1112 AKAql~~G~~k----------EAIdsYiKA-----dD~say~eVa~~~~~lGky--------------------EEAIey 1156 (1630)
T 1xi4_A 1112 AKAQLQKGMVK----------EAIDSYIKA-----DDPSSYMEVVQAANTSGNW--------------------EELVKY 1156 (1630)
T ss_pred HHHHHhCCCHH----------HHHHHHHhc-----CChHHHHHHHHHHHHcCCH--------------------HHHHHH
Confidence 99999999999 899999776 8899999999999888755 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA 259 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A 259 (323)
|..|.+..++. .+...+|.+|.+++++++ ++.|-. .++. .. +. .++..++. .|+|++|
T Consensus 1157 L~mArk~~~e~--~Idt~LafaYAKl~rlee-le~fI~----~~n~-ad---------~~--~iGd~le~---eg~YeeA 1214 (1630)
T 1xi4_A 1157 LQMARKKARES--YVETELIFALAKTNRLAE-LEEFIN----GPNN-AH---------IQ--QVGDRCYD---EKMYDAA 1214 (1630)
T ss_pred HHHHHhhcccc--cccHHHHHHHHhhcCHHH-HHHHHh----CCCH-HH---------HH--HHHHHHHh---cCCHHHH
Confidence 99999988663 344468999999999885 444421 2221 11 11 23344443 6889999
Q ss_pred HHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 260 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 260 l~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.+|.++ ..|..+|.+|.++|++++|++++++|....+
T Consensus 1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A 1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 9999875 2478899999999999999999999855543
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-12 Score=99.05 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
.|.++..++.+|.++...|+ +++|+.+++++++++|++ +.++..+|.++...+++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------- 82 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGD-------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-------- 82 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTC-------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH--------
T ss_pred chHHHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH--------
Confidence 57889999999999998885 467999999999999998 899999999999999998
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|+..++++++++|+++.+++.+|.++...+++ ++|+.+|+++++++|++ ..++..+
T Consensus 83 --~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~l 139 (148)
T 2dba_A 83 --KAETEASKAIEKDGGDVKALYRRSQALEKLGRL--------------------DQAVLDLQRCVSLEPKN-KVFQEAL 139 (148)
T ss_dssp --HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred --HHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCc-HHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 5777777
Q ss_pred HHHH
Q psy11738 199 GKTY 202 (323)
Q Consensus 199 g~~y 202 (323)
+.+.
T Consensus 140 ~~~~ 143 (148)
T 2dba_A 140 RNIS 143 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 172
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.43 E-value=1.1e-13 Score=123.83 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.|++++|+.+++.+.+..|+ +.+...++.+|..+|++. ++.+++. .| +..+|..+|..|+..|
T Consensus 74 ~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~----------e~e~f~~-----~p-n~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLA----------ELEEFIN-----GP-NNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ------------------------------------CHH----------HHTTTTT-----CC-----------------
T ss_pred CCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHH----------HHHHHHc-----CC-cHHHHHHHHHHHHHcC
Confidence 44567788888888775443 666677778888888777 4433332 24 3358888888888877
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ ++|+.+|.++ ..+..+|.|+.++|++++|++.++++. +| ..
T Consensus 137 ~y--------------------eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~---~~--- 179 (449)
T 1b89_A 137 MY--------------------DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--ST---RT--- 179 (449)
T ss_dssp CT--------------------TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH---HH---
T ss_pred CH--------------------HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc---hh---
Confidence 66 8888888765 236678888888888888888888872 11 11
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
| +....+.. ..|+|+.|..+... +..+|+. ...+..+|...|++++|+.++++++.+++.
T Consensus 180 ------W--k~v~~aCv---~~~ef~lA~~~~l~-L~~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 180 ------W--KEVCFACV---DGKEFRLAQMCGLH-IVVHADE----LEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp ------H--HHHHHHHH---HTTCHHHHHHTTTT-TTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred ------H--HHHHHHHH---HcCcHHHHHHHHHH-HHhCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 1 01111111 14566666555554 3345443 234566666666666666666666666543
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=2.4e-13 Score=119.68 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=89.4
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----------------hHHHHHhhHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----------------TTLFMLGMWCFE 149 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----------------~~~~~lg~~~~~ 149 (323)
+..|..+..+..+|..+...+++. +|+.+|.+++.+.|++. .++.++|.++..
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~ 242 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLE----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCH----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778889999999999999 89999999999999987 378888888888
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
++++ ++|+.+|+++++++|++ ..+++++|.+|..+|++++|+.+|++++.++|.+....
T Consensus 243 ~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 243 LKRY--------------------DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp TTCC--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred cCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7766 99999999999999987 68899999999999999999999999988888765432
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
. .+..+ .....+..+++...|.+++...|++
T Consensus 302 ~-~L~~l------------~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 302 R-ELRAL------------AEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------------------------------------
T ss_pred H-HHHHH------------HHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 2 11000 0011344556666677777666654
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.41 E-value=1.4e-12 Score=97.35 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++.+|.++...|++. +|+..|.++++.+|+++ .+++.+|.+++..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~----------------- 55 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYD----------DASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF----------------- 55 (129)
T ss_dssp CCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-----------------
T ss_pred HHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-----------------
Confidence 45788999999999998 89999999999999999 7999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++.+|++. +.+++.+|.+|..+|++++|+.+|++++...|++..
T Consensus 56 ---~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 56 ---QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp ---HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred ---HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 999999999999999962 477999999999999999999999999999988754
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=1.3e-13 Score=121.49 Aligned_cols=123 Identities=16% Similarity=0.051 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhccCCCCcH-----------------HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 74 LILSAYFLVYNALPQHEDHY-----------------AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
++++|+.+|++++.+.|.+. .++.++|.++..++++. +|+.+|.++++++|++
T Consensus 194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~ 263 (338)
T 2if4_A 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD----------EAIGHCNIVLTEEEKN 263 (338)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCC
Confidence 55779999999999999887 48999999999999999 8999999999999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHcCCHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT-YMRLENYEQAAYYL 215 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~-y~~~g~~~~A~~~~ 215 (323)
..+++.+|.++..+|++ ++|+.+|+++++++|++ ..++..|+.+ ....+..+++...|
T Consensus 264 ~~a~~~lg~a~~~~g~~--------------------~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 264 PKALFRRGKAKAELGQM--------------------DSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHHHHHHHHHHTTTCH--------------------HHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765 99999999999999998 6999999988 45667788899999
Q ss_pred HHHhCCCCCCch
Q psy11738 216 EMTKNYPVKQDK 227 (323)
Q Consensus 216 ~~al~~~~~~~~ 227 (323)
.+++...|.+..
T Consensus 323 ~~~l~~~p~~~~ 334 (338)
T 2if4_A 323 KGIFKGKDEGGA 334 (338)
T ss_dssp ------------
T ss_pred HHhhCCCCCCCC
Confidence 999999888753
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=2.5e-13 Score=100.23 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhccC---CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 73 QLILSAYFLVYNALPQ---HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
+++++|+.++++++++ +|+++.++..+|.++..+|++. +|+.+|+++++++|+++.+++.+|.++..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYR----------KAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4555677777777777 5777777777777777777777 77777777777777777777777777777
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.|++ ++|+..|+++++..|++
T Consensus 74 ~g~~--------------------~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 74 LGRY--------------------EQGVELLLKIIAETSDD 94 (117)
T ss_dssp HTCH--------------------HHHHHHHHHHHHHHCCC
T ss_pred cCCH--------------------HHHHHHHHHHHHhCCCc
Confidence 7654 77777777777777776
No 177
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=9e-13 Score=117.83 Aligned_cols=125 Identities=15% Similarity=0.025 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+.|..+... +..+|++ ...+..+|.+.|++++|+.++++++.+++.+... |....++++-+ ..
T Consensus 194 ~lA~~~~l~-L~~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~---------ftel~il~~ky---~p 256 (449)
T 1b89_A 194 RLAQMCGLH-IVVHADE----LEELINYYQDRGYFEELITMLEAALGLERAHMGM---------FTELAILYSKF---KP 256 (449)
T ss_dssp HHHHHTTTT-TTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH---------HHHHHHHHHTT---CH
T ss_pred HHHHHHHHH-HHhCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH---------HHHHHHHHHhc---CH
Confidence 666555554 2344443 3357789999999999999999999998766432 12222333322 25
Q ss_pred CcHHHHHHHHHHHHhhCC-----cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHH
Q psy11738 254 SSYEEALKYFLEAEKQHP-----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEK 316 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~ 316 (323)
++..+.++.|...+.+.| +. ...|..+.-+|..-++++.|+......... -.++.+++++.+
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~-~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHT-TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc
Confidence 788899999988888888 66 688999999999999999999987665322 334555555544
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=2.7e-12 Score=114.28 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc----------------CCCCcHHHHHHHHHHHHHhhccc
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP----------------QHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
..+..+|.++...| ++++|+..|+++++ ++|.++.++.++|.++..++++.
T Consensus 224 ~~~~~~g~~~~~~g-------------~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ-------------NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhc-------------CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 34555666666655 45778999998888 88888999999999999999998
Q ss_pred chHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 111 GTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
+|+.+++++++++|+++.+++.+|.++..++++ ++|+.+|+++++++|++
T Consensus 291 ----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 291 ----------GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY--------------------DQALADLKKAQEIAPED 340 (370)
T ss_dssp ----------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC
T ss_pred ----------HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999988755 99999999999999997
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..++..++.++..+++++++...
T Consensus 341 -~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 341 -KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988877653
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.37 E-value=3.7e-13 Score=99.32 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcc---CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 121 TIKHHMNKAIEL---KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 121 ~a~~~~~~al~l---~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
+|+.+|++++++ +|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +.++++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~ 66 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY--------------------RKAEAVLANGVKQFPNH-QALRVF 66 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCc-hHHHHH
Confidence 788999999999 699999999999999998765 99999999999999998 799999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+|.+|..+|++++|+.++++++...|.+..
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999999999999888754
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=5.9e-12 Score=93.94 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH---HHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY---AIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.+|.++...|+ +++|+..++++++.+|+++ .+++.+|.++...|++. +|+.
T Consensus 4 ~~~~~a~~~~~~~~-------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~----------~A~~ 60 (129)
T 2xev_A 4 TAYNVAFDALKNGK-------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQ----------LAEA 60 (129)
T ss_dssp CHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHH----------HHHH
Confidence 46778888888774 5779999999999999998 79999999999999999 8999
Q ss_pred HHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 125 HMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 125 ~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
.|+++++.+|++ +.+++.+|.++...|++ ++|+..|+++++..|++ +.+...+..+
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~~~~~p~~-~~~~~a~~~l 119 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN--------------------TEAQQTLQQVATQYPGS-DAARVAQERL 119 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTS-HHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCC-hHHHHHHHHH
Confidence 999999999999 88899999999998765 99999999999999997 4655544444
Q ss_pred H
Q psy11738 202 Y 202 (323)
Q Consensus 202 y 202 (323)
-
T Consensus 120 ~ 120 (129)
T 2xev_A 120 Q 120 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=2e-12 Score=96.25 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK 123 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 123 (323)
..++.++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +|.
T Consensus 2 ~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~----------~A~ 58 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKD-------------FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN----------KCR 58 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHH
T ss_pred hHHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH----------HHH
Confidence 346778889999988775 467999999999999999999999999999999998 899
Q ss_pred HHHHHHHccCCCC-------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 124 HHMNKAIELKPDD-------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 124 ~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
.++.+++.+.|++ +.+++.+|.++...|++ ++|+.+|++++++.|+ +....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~--~~~~~ 116 (131)
T 1elr_A 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY--------------------KDAIHFYNKSLAEHRT--PDVLK 116 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCCC--HHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCC--HHHHH
Confidence 9999999999887 88999999999988765 9999999999999995 47888
Q ss_pred HHHHHHHHcCC
Q psy11738 197 MLGKTYMRLEN 207 (323)
Q Consensus 197 ~lg~~y~~~g~ 207 (323)
.++.+...+++
T Consensus 117 ~l~~~~~~~~~ 127 (131)
T 1elr_A 117 KCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887765543
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.8e-12 Score=117.31 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=121.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCC-----------------HHHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKED-----------------VEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~-----------------~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~ 76 (323)
..+.+|..++..|+|++|+..+..+ ..|.. ..++..+|.+|...|+ ++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-------------~~ 72 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-------------KD 72 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-------------HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------------HH
Confidence 4688999999999999999999876 23332 2357788999988885 46
Q ss_pred HHHHHHHhhccCCCCcHHH------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHh
Q psy11738 77 SAYFLVYNALPQHEDHYAI------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLG 144 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg 144 (323)
+|+.++.+++...+....+ ...+|.++...|++. +++.++.+++...+ .-..++..+|
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLD----------DQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHH----------HHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHH----------HHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 6888888888776654443 233444444445554 67777777776543 2356788899
Q ss_pred hHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.++...|++ .+|+..+++++.. .|. ...++..+|.+|...|++++|..+++++
T Consensus 143 ~~~~~~g~~--------------------~~A~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 143 TLHYQKKQY--------------------KDSLALINDLLREFKKLDDKPS-LVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHTCH--------------------HHHHHHHHHHHHHHTTSSCSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCh--------------------HHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999998765 9999999998875 222 2478999999999999999999999999
Q ss_pred hCCC
Q psy11738 219 KNYP 222 (323)
Q Consensus 219 l~~~ 222 (323)
+.+.
T Consensus 202 l~~~ 205 (434)
T 4b4t_Q 202 RTAA 205 (434)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=2.9e-12 Score=98.83 Aligned_cols=141 Identities=17% Similarity=0.140 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+.++..+|.++...|++. +|+.++.+++++.|... .++..+|.++...|++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------ 65 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFR----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF------------ 65 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH------------
Confidence 3456778888888888887 78888888888766533 3677888888877655
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 240 (323)
++|+.+|++++++.+.. ...++..+|.++...|++++|+.++++++.+.+...
T Consensus 66 --------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------- 123 (164)
T 3ro3_A 66 --------ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-------------- 123 (164)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------
T ss_pred --------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------------
Confidence 88999999988874331 135688889999999999999998888866411100
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++.....++..+|.+|...|++++|+.++++++++.
T Consensus 124 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 124 -----------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 111114668899999999999999999999998764
No 184
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.30 E-value=2.2e-11 Score=102.01 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=131.3
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC-CC--------------cHHHHHHHHHHHHHHHHhhc----------
Q psy11738 34 NKMLESS--EYKEDVEIIWRLVRVKYNLATHSS-SL--------------SDADKKQLILSAYFLVYNAL---------- 86 (323)
Q Consensus 34 ~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~-~~--------------~~~~~~~~~~~A~~~~~~al---------- 86 (323)
+.+++.+ .+|++...+...|..|..-+.... .. ...+....|..|..+..+++
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~ 131 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTRE 131 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 3444544 599999999998888877655211 00 01133445555555555444
Q ss_pred --------------cCCCCcHHHHHHHHHHHHHhhcc-cchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHHHH
Q psy11738 87 --------------PQHEDHYAIHKWLAVILNEKATL-EGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWCFE 149 (323)
Q Consensus 87 --------------~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~ 149 (323)
+.+|+++++++|.|++....-.. .+....+....+++..++++++++|+ +..+|..+|.+|..
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 34577799999999998764333 23333455666889999999999999 78899999999988
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHHHHHHHHHhCCCCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~ 225 (323)
.... ..|+.++|..+|++|++++|+....+++.+|..+.. +|++++|..++++++..+|..
T Consensus 212 vPp~---------------~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 212 APES---------------FGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp SCTT---------------TTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCc---------------cCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 6321 125569999999999999997436999999999988 599999999999999999885
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=1.5e-11 Score=109.41 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----------------cCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----------------LKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----------------l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+..+..+|..+...+++. +|+..|.++++ ++|.+..++.++|.+++.++++
T Consensus 223 a~~~~~~g~~~~~~g~~~----------~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~--- 289 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWE----------MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW--- 289 (370)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH---
Confidence 445778899999999988 88889999998 5555566666666666655433
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|+++++++|.
T Consensus 290 -----------------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 290 -----------------QGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp -----------------HHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66666666666666665 466666666666666666555555555554443
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.28 E-value=6.7e-12 Score=96.76 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH------HHHHHHHHHHHHhhcccchHHHHHhH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY------AIHKWLAVILNEKATLEGTKARIQQL 119 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (323)
+.++..+|.+|...|+ +++|+.++++++++.|... .++..+|.++...|++.
T Consensus 9 ~~~~~~l~~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------- 66 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE--------- 66 (164)
T ss_dssp HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH---------
Confidence 4567778888887774 4668888888888766544 37888999999999998
Q ss_pred HHHHHHHHHHHccCCCC------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC----
Q psy11738 120 ETIKHHMNKAIELKPDD------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL---- 189 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 189 (323)
+|.+++++++++.+.. ..++..+|.++...|++ ++|+.++++++++.+.
T Consensus 67 -~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 67 -TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--------------------EKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHccch
Confidence 8888999999886653 55788899998888755 9999999999987321
Q ss_pred -chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 190 -FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 190 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
....++..+|.+|...|++++|+.++++++.+.
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 123678999999999999999999999998763
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.27 E-value=5.2e-12 Score=106.87 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=136.1
Q ss_pred chhhhHHHHHHh-------hhHHHhhccHHHHHHHHHhC-C-CCCC---------------------HHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKK-------SDDLFEEQQFEEVNKMLESS-E-YKED---------------------VEIIWRLVRVKYN 58 (323)
Q Consensus 9 ~~~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~-~-~~~~---------------------~~~~~~la~~y~~ 58 (323)
..|......+.. +..+...+++.+++..+.+. . .|.. .++...++.++..
T Consensus 35 ~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~ 114 (282)
T 4f3v_A 35 YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA 114 (282)
T ss_dssp HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH
T ss_pred hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH
Confidence 344555555555 66777777777777777664 2 2322 3444556777777
Q ss_pred hcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-C-
Q psy11738 59 LATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-D- 136 (323)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~- 136 (323)
.| ++++|...+..++...|.+. +++.+|.++...+++. +++.+|.++....+. .
T Consensus 115 ~g-------------~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~----------dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 115 QG-------------NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT----------DVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp HT-------------CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH----------HHHHHHTTGGGCSCHHHH
T ss_pred CC-------------CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH----------HHHHHHHHhhccCCcccH
Confidence 66 56789999999999999999 9999999999999999 888899988776422 1
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+++++|.++..+|++ ++|+.+|++++... |...+.+++++|.|+..+|+.++|...
T Consensus 171 ~~a~~~LG~al~~LG~~--------------------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALF--------------------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35899999999998765 99999999999654 653357899999999999999999999
Q ss_pred HHHHhCCCCC
Q psy11738 215 LEMTKNYPVK 224 (323)
Q Consensus 215 ~~~al~~~~~ 224 (323)
|++++..+|.
T Consensus 231 l~~a~a~~P~ 240 (282)
T 4f3v_A 231 LEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhcCCc
Confidence 9999999998
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.24 E-value=2.1e-11 Score=89.33 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+++.|+++++.+|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..+++.+|.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF--------------------DAALPHLRAALDFDPTY-SVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHHCCCc-HHHHHHHHH
Confidence 467789999999999999999999999998765 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|...|++++|+.+|++++.++|..
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999987654
No 189
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.22 E-value=1.8e-10 Score=100.43 Aligned_cols=152 Identities=10% Similarity=-0.050 Sum_probs=114.5
Q ss_pred CCCCHHHHH--HHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccc-hHHHHHh
Q psy11738 42 YKEDVEIIW--RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEG-TKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~--~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 118 (323)
.|.+.+++- ..|..+...++ .+.+.+|+.+|++|++++|+++.++..++.++........ ....+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGD----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 455555543 34555544432 3467889999999999999999999999988875433321 1122222
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...+.+ -..++..+|.++.++..++..+...|++ ++|+.++++|+.++|+ ..++..+
T Consensus 260 l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~--------------------d~A~~~l~rAl~Ln~s--~~a~~ll 316 (372)
T 3ly7_A 260 LNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT--------------------DESYQAINTGIDLEMS--WLNYVLL 316 (372)
T ss_dssp HHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCCC--HHHHHHH
T ss_pred HHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhcCCC--HHHHHHH
Confidence 223333 1245678899999999999888777765 9999999999999986 3788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|.++...|++++|++.|++|+.++|...
T Consensus 317 G~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 317 GKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999764
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.21 E-value=8e-11 Score=86.21 Aligned_cols=101 Identities=18% Similarity=0.068 Sum_probs=86.4
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+|+..++++++.+|+++.+++.+|.++...|++. +|+..|+++++++|+++.+++.+|.++...|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--- 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFD----------AALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR--- 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH---
Confidence 4899999999999999999999999999999999 899999999999999999999999999998766
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLEN 207 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~ 207 (323)
++|+.+|++++++.|+.. ......+...+..+++
T Consensus 70 -----------------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 70 -----------------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999987531 2344455554444443
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=7.7e-12 Score=90.63 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.++..+|.++...|++. +|++.|+++++++|+++.+++.+|.++...|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------------------ 54 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYR----------EAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY------------------ 54 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred hHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH------------------
Confidence 5678899999999999999 899999999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
++|+.+|+++++++|++ ...+++.+|.++..+|+++.|+..+++
T Consensus 55 --~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 55 --TQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp --HHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred --HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999996 137788999999999988877766554
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=1.9e-10 Score=80.00 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=78.4
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.++.++..+|.++...+++. +|+.+|.++++++|+++.+++.+|.++...+++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------------- 59 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------------- 59 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred ccHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-----------------
Confidence 46788999999999999998 899999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++|+.+|+++++++|++ +.++..+|.++...|
T Consensus 60 ---~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 60 ---DEAIEYYQKALELDPNN-AEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC
Confidence 99999999999999998 699999999998765
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=2.4e-09 Score=91.69 Aligned_cols=185 Identities=10% Similarity=0.042 Sum_probs=135.2
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC--CcHHHHHHHHHHHHHhhc
Q psy11738 33 VNKMLESS-E-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE--DHYAIHKWLAVILNEKAT 108 (323)
Q Consensus 33 A~~~~~~~-~-~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~ 108 (323)
|+..+++. . .+.+...++.+|.++...|+ +++|+.++.+.+..+| .+.++....+.++..+|+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~-------------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD-------------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence 66667765 2 34556667899999998875 5779999999999997 899999999999999999
Q ss_pred ccchHHHHHhHHHHHHHHHHHHccCCC----ChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIELKPD----DSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 182 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l~p~----~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (323)
.+ .|.+.++++.+.+|+ +......| |++....| .+++++|...|++
T Consensus 152 ~d----------~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g------------------~~~~q~A~~~f~E 203 (310)
T 3mv2_B 152 VS----------TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN------------------KETATSNFYYYEE 203 (310)
T ss_dssp HH----------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT------------------CSTTTHHHHHHHH
T ss_pred HH----------HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhC------------------CccHHHHHHHHHH
Confidence 99 899999999999993 22333344 44454444 1356999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC----------CCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 183 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP----------VKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 183 al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+.+..|++ ......+. ++.++|++++|...++.+++.. |++..... ++..+.. .
T Consensus 204 l~~~~p~~-~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La----N~i~l~~-----~----- 267 (310)
T 3mv2_B 204 LSQTFPTW-KTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA----NQITLAL-----M----- 267 (310)
T ss_dssp HHTTSCSH-HHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH----HHHHHHH-----H-----
T ss_pred HHHhCCCc-ccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH----HHHHHHH-----H-----
Confidence 99988873 23333333 9999999999999999888874 55544321 1111100 0
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
.|+ +|.+++.++...+|+. +.+
T Consensus 268 lgk--~a~~l~~qL~~~~P~h-p~i 289 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHEH-AFI 289 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCCC-HHH
T ss_pred hCh--HHHHHHHHHHHhCCCC-hHH
Confidence 344 8899999999999998 443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.5e-11 Score=87.90 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=82.2
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
++.++..+|.+++..|++ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|
T Consensus 3 ~~~~~~~~g~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY--------------------REAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456788899888887655 99999999999999998 699999999999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
++++.++|.+..... . ..+++.+|.++..+|+++.|+
T Consensus 62 ~~al~~~p~~~~~~~------------------------------------------~-~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAI------------------------------------------R-SKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHTSCSSTTSHHH------------------------------------------H-HHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHhCCCccHHHH------------------------------------------H-HHHHHHHHHHHHHHHhHhhhH
Confidence 999999887632100 1 345677888888888887777
Q ss_pred HHHHHh
Q psy11738 296 YYLEMT 301 (323)
Q Consensus 296 ~~~~~a 301 (323)
..+++.
T Consensus 99 ~~~~~~ 104 (111)
T 2l6j_A 99 VEVDEL 104 (111)
T ss_dssp SSSSSC
T ss_pred hHHHHh
Confidence 666543
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=7.5e-11 Score=84.31 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=65.3
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
.+|+++.+++.+|.+++..|++ ++|+.+|+++++++|++ +.+++.+|.+|..+|++++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA--------------------SRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence 4799999999999999998765 99999999999999998 69999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q psy11738 212 AYYLEMTKNYPVKQ 225 (323)
Q Consensus 212 ~~~~~~al~~~~~~ 225 (323)
+.+|++++.+.|..
T Consensus 61 ~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 61 IDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcC
Confidence 99999999886544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.11 E-value=1.2e-10 Score=83.15 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=61.7
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 265 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~ 265 (323)
.+|++ +.+++.+|.+|...|++++|+.+|++++++
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 36 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVET-------------------------------------------- 36 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 36777 688888888888888887777766666554
Q ss_pred HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 266 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 266 a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+|++ +.+++.+|.+|..+|++++|+.+|++++++.|.........+...+|
T Consensus 37 ----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 37 ----DPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp ----STTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 5555 56788888888888888888888888888877655555555554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=2.2e-09 Score=81.47 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.+++++|+.+++++.+.. ++.+. +|.+|....... +|+++|+++.+. .++.+++.||.+|..-.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~----------~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQ----------KLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHH----------HHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 457899999999999987 44454 888887665555 589999999987 78999999999887611
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
. -.+++++|+.+|+++.+. ++ +.+.++||.+|.. .+++++|+.+|++|.+.
T Consensus 72 g----------------~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 Y----------------VKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp S----------------SCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred C----------------CCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 0 024569999999999987 44 6899999999999 99999999999999886
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=1.1e-08 Score=97.43 Aligned_cols=188 Identities=12% Similarity=-0.006 Sum_probs=148.8
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH-HHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK-HHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+.....|++++...|.+++.|..++..+...|+.. +|+ ..|++|+...|.+...|..++.+....|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~----------~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS----------TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT----------THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 445678899999999999999999999998888877 675 889999999999998898888888777665
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----------CCC----------chhHHHHHHHHHHHHcCCHHHHH
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-----------HPL----------FYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~----------~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
+.|...|++++.. .|. ....+|...+.+..+.|+.+.|.
T Consensus 395 --------------------e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 395 --------------------PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888764 243 12357888889999999999999
Q ss_pred HHHHHHhCC-CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 213 YYLEMTKNY-PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 213 ~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
..|.+|++. .+..... + . ..+...+ ...++++.|...|.++++..|++ +..+...+......|+.
T Consensus 455 ~vf~~A~~~~~~~~~~l-y--------i--~~A~lE~--~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDI-Y--------L--ENAYIEY--HISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHTGGGSCTHH-H--------H--HHHHHHH--TTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCChHH-H--------H--HHHHHHH--HhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCH
Confidence 999999886 2222111 1 0 1111111 11345899999999999999988 78888888888899999
Q ss_pred HHHHHHHHHhhCCCC
Q psy11738 292 EQAAYYLEMTKNYPA 306 (323)
Q Consensus 292 ~~A~~~~~~al~~~~ 306 (323)
+.|...|++|+...|
T Consensus 521 ~~AR~lferal~~~~ 535 (679)
T 4e6h_A 521 SQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.03 E-value=1.5e-08 Score=84.90 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchH-----------------HHHHhHHHHHHHHHHHHc--
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTK-----------------ARIQQLETIKHHMNKAIE-- 131 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~a~~~~~~al~-- 131 (323)
.+-+--.+..++-.+..+|+|.......|..|...+. +.... +....+..+.++..+++.
T Consensus 45 ~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~ 124 (301)
T 3u64_A 45 AQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA 124 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344557888899999999999988877777766544 22111 112233334444444443
Q ss_pred ----------------------cCCCChhHHHHHhhHHHHh-----cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy11738 132 ----------------------LKPDDSTTLFMLGMWCFEI-----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE 184 (323)
Q Consensus 132 ----------------------l~p~~~~~~~~lg~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 184 (323)
.+|++.++++..|...... ++++ .+ +.-..|...+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~----Al----------~~l~~A~a~lerAl 190 (301)
T 3u64_A 125 YPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSA----LP----------DTVHAAVMMLERAC 190 (301)
T ss_dssp STTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSC----CH----------HHHHHHHHHHHHHH
T ss_pred CccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChH----HH----------HhHHHHHHHHHHHH
Confidence 3455667777777655331 1111 11 12388999999999
Q ss_pred hcCCCch-hHHHHHHHHHHHHc-----CCHHHHHHHHHHHhCCCCCC
Q psy11738 185 KQHPLFY-SQNVLMLGKTYMRL-----ENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 185 ~~~p~~~-~~~~~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~ 225 (323)
+++|+.. ..+|..||..|... |+.++|..+|++|+.++|+.
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 9999931 35899999888775 66666666666666666543
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.03 E-value=8.8e-10 Score=76.48 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
+.++..++.+|.++...|+ +++|+.+++++++++|.++.++..+|.++...|++. +|
T Consensus 6 ~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~A 62 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD----------EA 62 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred cccHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH----------HH
Confidence 3467888999999988885 467999999999999999999999999999999998 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+.+|+++++++|+++.++..+|.++...|
T Consensus 63 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887643
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=3.2e-10 Score=80.40 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=76.1
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ-NVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+.+|..++..|++ ++|+..|+++++++|++ +. +++.+|.+|..+|++++|+.+|++++
T Consensus 4 ~~~a~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDI--------------------ENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777654 99999999999999998 68 99999999999999999999999999
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
+++|++..... .+.+.+++..|.++...+|+.
T Consensus 63 ~~~p~~~~~~~----------------------~~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 63 ELNPDSPALQA----------------------RKMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHCTTSTHHHH----------------------HHHHHHHHHHHCCTTHHHHCC
T ss_pred hcCCCcHHHHH----------------------HHHHHHHHHHHHHHhccCccc
Confidence 99998875421 134678899999888888875
No 202
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.00 E-value=1.2e-08 Score=97.30 Aligned_cols=228 Identities=8% Similarity=-0.018 Sum_probs=166.6
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH-HHHHhhccCCCCcHHHHHHHHHHHHHhhc
Q psy11738 32 EVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY-FLVYNALPQHEDHYAIHKWLAVILNEKAT 108 (323)
Q Consensus 32 ~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 108 (323)
.....|+++ ..|.++++|+..+..+...|+... |+ ..+++|+...|.+...+..++.+....|+
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~-------------a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST-------------VITKYLKLGQQCIPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT-------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH-------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 344566665 489999999999998888876543 76 99999999999998888888888888888
Q ss_pred ccchHHHHHhHHHHHHHHHHHHcc-----------CCC-----------ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIEL-----------KPD-----------DSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l-----------~p~-----------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++ .|.+.|++++.. .|. ...+|...+.+..+.++.
T Consensus 394 ~e----------~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l------------- 450 (679)
T 4e6h_A 394 IP----------EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL------------- 450 (679)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------------
T ss_pred HH----------HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH-------------
Confidence 77 677788888865 253 234566666665555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~ 245 (323)
+.|...|.+|++..|......+...+.+..+.+ +++.|...|+.+++..|++..-.. .+..+
T Consensus 451 -------~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~-~y~~f--------- 513 (679)
T 4e6h_A 451 -------AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN-KYLDF--------- 513 (679)
T ss_dssp -------HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH-HHHHH---------
T ss_pred -------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH-HHHHH---------
Confidence 899999999998733222356666666666655 489999999999998887654211 11111
Q ss_pred HhhccCCCCcHHHHHHHHHHHHhhCCc--chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 246 AIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 246 ~~~~~~~~~~~~~Al~~~~~a~~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
... .++.+.|...|++++...|+ .....|......-...|+.+.+...++++.+..|++.--+.+.+
T Consensus 514 -e~~---~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 514 -LIY---VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp -HHH---HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred -HHh---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 111 46789999999999998883 22466777777777889999999999999999888665455443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.99 E-value=4.7e-10 Score=79.52 Aligned_cols=91 Identities=10% Similarity=0.105 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+..|.++...|++. +|+..|+++++++|+++. +++.+|.++...|++ ++
T Consensus 4 ~~~a~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~--------------------~~ 53 (99)
T 2kc7_A 4 LKTIKELINQGDIE----------NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW--------------------QK 53 (99)
T ss_dssp HHHHHHHHHHTCHH----------HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH--------------------HH
T ss_pred HHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH--------------------HH
Confidence 56788888888888 899999999999999999 999999999998766 99
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|+.+|+++++++|++ ..++.. +.+.+++.+|+++...+|.+.
T Consensus 54 A~~~~~~al~~~p~~-~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 54 ALNNYQSAIELNPDS-PALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHHCTTS-THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhcCCCc-HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 999999999999998 576643 667889999998888877654
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.3e-09 Score=96.81 Aligned_cols=175 Identities=11% Similarity=0.138 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----------------HHHHHhhHHHHhcCCcH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----------------TLFMLGMWCFEITDMPW 155 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----------------~~~~lg~~~~~~~~~~~ 155 (323)
|......|..+...|++. +|++.|.++++..|.... ++..+|.+|...|++
T Consensus 4 p~~~l~~a~~l~~~~~y~----------eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~-- 71 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYN----------EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK-- 71 (434)
T ss_dssp TTHHHHHHHHHHHHTCHH----------HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH--
T ss_pred hHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH--
Confidence 445566677777778887 899999999999998654 477889998888765
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
++|+.+|.+++++.+... ..+...+|.++...|++++|+.++++++...+.......
T Consensus 72 ------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 72 ------------------DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp ------------------HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred ------------------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 999999999998755431 134667899999999999999999999876543322111
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.......++..++. .|+|.+|+..+.++... .|.. ..++..+|.+|..+|++++|..+|++++.+
T Consensus 134 -----~~~~~~~la~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 134 -----KHSLSIKLATLHYQ---KKQYKDSLALINDLLREFKKLDDKPSL-VDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp -----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTTSSCSTHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 01122234444443 68999999999998866 2333 467899999999999999999999999876
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.+
T Consensus 205 ~~ 206 (434)
T 4b4t_Q 205 AN 206 (434)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.3e-08 Score=77.14 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCC
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 305 (323)
..++++|+.+|+++.+. .+ +.++++||.+|.. .+++++|+.+|++|.+..
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34566666666666655 23 5778888888888 888888888888888773
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.88 E-value=1.8e-08 Score=70.72 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=67.1
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
+|+++..+..+|.+++..++- ...++|..+++++++++|++ +.+++.+|..+...|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-----------------~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-----------------AMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-----------------CCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 699999999999998765531 12399999999999999998 799999999999999999999
Q ss_pred HHHHHHhCCCCCC
Q psy11738 213 YYLEMTKNYPVKQ 225 (323)
Q Consensus 213 ~~~~~al~~~~~~ 225 (323)
.++++++..+|.+
T Consensus 64 ~~w~~~l~~~p~~ 76 (93)
T 3bee_A 64 DTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHTCCCTT
T ss_pred HHHHHHHhhCCCC
Confidence 9999999999983
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=1.5e-07 Score=82.03 Aligned_cols=145 Identities=14% Similarity=0.036 Sum_probs=114.2
Q ss_pred hhHHHHHHhhhHHHhh---ccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEE---QQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..+=+++.+|..++.. ..+.+|+.+++++ .+|+++.++-.++.+|......... ..........++. ...++
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~--~~~~~~~l~~a~~-a~~a~ 270 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL--DEKQLAALNTEID-NIVTL 270 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCC--chhhHHHHHHHHH-HHHhc
Confidence 3445567778877764 5668899999998 5999999999999998754433321 1222333445555 23567
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+|.++.++..++..+...|+++ +|+..+++|+.++|+ ..++..+|.++...|++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d----------~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~------------- 326 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTD----------ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN------------- 326 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH-------------
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH-------------
Confidence 889999999999999888889999 899999999999975 67888999998888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+..|.+|+.++|..
T Consensus 327 -------~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 327 -------REAADAYLTAFNLRPGA 343 (372)
T ss_dssp -------HHHHHHHHHHHHHSCSH
T ss_pred -------HHHHHHHHHHHhcCCCc
Confidence 99999999999999985
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.79 E-value=2.6e-08 Score=91.50 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
+|.-+..+.++|.+|..+|+++ +|..++++++++ .|+++. .+.+||.+|..+|++
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~----------eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~------- 409 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYE----------EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI------- 409 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH-------
T ss_pred CHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------
Confidence 3445566778888888888888 777777777764 566654 588899999988755
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|++|+++ .|+++ .....+|+.++..++.+++|...|+++.+
T Consensus 410 -------------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 410 -------------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 55552 35577899999999999999999999854
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=3.1e-08 Score=90.99 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC-----CCCCchhhhhhhcch
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-----PVKQDKDQCFEITDM 236 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~ 236 (323)
.+|+|++|+..+++++++ .|++ ...++.+||.+|..+|++++|+.++++++.+ .|+++.. ...+.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-a~~l~-- 397 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL-GMAVM-- 397 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHH--
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHH--
Confidence 468999999999999986 4444 2467999999999999999999999999876 3444332 12222
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh-----CCcc--hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~-----~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.+|..+.. .|++++|+..|++|+.+ .|+. ......+|+.++..+|++++|...|.++.+
T Consensus 398 -----nLa~~~~~---~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 -----RAGLTNWH---AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333 78999999999999976 3333 145678999999999999999999988754
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=5.6e-08 Score=68.15 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=65.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|++++.+..+|.++...++..- ..+|..+++++++++|+++.+++.+|..++..|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~-------~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y--------------- 59 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAM-------TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF--------------- 59 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCC-------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH---------------
Confidence 68999999999999977665310 01788999999999999999999999999998755
Q ss_pred CCCCHHHHHHHHHHHHhcCCCc
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+.+|+++++.+|..
T Consensus 60 -----~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 60 -----QEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp -----HHHHHHHHHHHTCCCTT
T ss_pred -----HHHHHHHHHHHhhCCCC
Confidence 99999999999999984
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=1.4e-07 Score=71.70 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-CCchhHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLG 199 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg 199 (323)
.+.+.|.+.++.+|.+..+.+.+|+++...++. .++++++..++.+++.+ |....+++++||
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~-----------------~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYN-----------------DDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSH-----------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 566778889999999999999999988776532 12389999999999998 733369999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
..|+++|+|++|+.+++++++++|.+..+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999998654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=1.4e-07 Score=85.23 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
..|+|++|+..+++++++ .|+++ ..++.+||.+|..+|+|++|+.++++++.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999999986 45552 356899999999999999999999998764
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHh-hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
+++.+. -+|+. +..+.+||.+|..+|++++|...|++|+++.
T Consensus 370 ---------------------~~~~lG~~Hp~~-a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 370 ---------------------YSKHYPVYSLNV-ASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp ---------------------HHHHSCSSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHcCCCChHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111111 15554 6779999999999999999999999999873
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=5.3e-07 Score=68.45 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-C-CChhHHHHHhhHHHHhc
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-P-DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~ 151 (323)
.+..+...|...+..+|.+.++.+.+|.++....+.. ...+++..++..++.+ | ++.+++|+||..++..+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~-------~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYND-------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHH-------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 4556777788888888999999999999999876443 2227889999999999 7 67899999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
++ ++|.++++++++++|++ ..+...
T Consensus 86 ~Y--------------------~~A~~y~~~lL~ieP~n-~QA~~L 110 (152)
T 1pc2_A 86 EY--------------------EKALKYVRGLLQTEPQN-NQAKEL 110 (152)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CH--------------------HHHHHHHHHHHhcCCCC-HHHHHH
Confidence 65 99999999999999998 466443
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=5e-07 Score=64.68 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=62.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHHcCCH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-------PLFYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~y~~~g~~ 208 (323)
++..++.+|..++..+++ ..|+.+|+.|++.. +. .+.++..||.+|.++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y--------------------~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADY--------------------YHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHccch--------------------HHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCH
Confidence 456688999999998765 99999999999873 22 257899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchh
Q psy11738 209 EQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~ 228 (323)
+.|+.+++++++++|++...
T Consensus 63 ~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999998653
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=0.00026 Score=65.14 Aligned_cols=254 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhcccCCCC----------------cH---
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E-YKEDVEIIWRLVRVKYNLATHSSSL----------------SD--- 68 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~la~~y~~~~~~~~~~----------------~~--- 68 (323)
+.+.+.+.++.+-..+-.|+++.+..+++++ . .| +++.|......-...+...... +.
T Consensus 10 ~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred chHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4778888899998888889999999999987 3 45 7787766555544444211100 00
Q ss_pred ----------HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh--------------------------------
Q psy11738 69 ----------ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEK-------------------------------- 106 (323)
Q Consensus 69 ----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------------------------------- 106 (323)
+...+..+.+...|++|+..-+.+.+ ..|........
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~-~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS-ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH-HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 01246678899999999996333332 22222111110
Q ss_pred ----------------hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 107 ----------------ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 107 ----------------~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++..+... ..........|++++...|..+..|...+.++...|+.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~----------------- 229 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGG-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK----------------- 229 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred hhccHHHHHHHHHHHhcCCccCcc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------
Confidence 00000000 00012345689999999999999999999998888766
Q ss_pred CCHHHHHHHHHHHHhcCCCch---------------------------------------hHHHHHHHHHHHHcCCHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY---------------------------------------SQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~---------------------------------------~~~~~~lg~~y~~~g~~~~A 211 (323)
+.|...|++|+.. |... ...|...+..+.+.++.+.|
T Consensus 230 ---~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 230 ---EKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp ---HHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---HHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 5555666665555 5541 12344444455567888999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
...|++| . .|..... . |. ..|..-+.. .++.+.|...|..++...|+. +..+...+......|+.
T Consensus 306 R~i~~~A-~-~~~~~~~-v-------~i--~~A~lE~~~--~~d~~~ar~ife~al~~~~~~-~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 306 RKLFIEL-G-NEGVGPH-V-------FI--YCAFIEYYA--TGSRATPYNIFSSGLLKHPDS-TLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHH-T-TSCCCHH-H-------HH--HHHHHHHHH--HCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh-h-CCCCChH-H-------HH--HHHHHHHHH--CCChHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCH
Confidence 9999999 3 3322111 1 10 011111111 235789999999999998987 66667777778889999
Q ss_pred HHHHHHHHHhh
Q psy11738 292 EQAAYYLEMTK 302 (323)
Q Consensus 292 ~~A~~~~~~al 302 (323)
+.|...|+++.
T Consensus 371 ~~aR~l~er~~ 381 (493)
T 2uy1_A 371 ENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99998888873
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.30 E-value=1.2e-06 Score=79.21 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
.|+|++|+..+++++++ .|+++ ..++.+||.+|..+|++++|+.++++++.+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------------- 358 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------------- 358 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------------
Confidence 46889999999999976 44442 356889999999999999999999988764
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHH-hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAE-KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~-~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+++.+ ..+|+. +..+++||.+|..+|++++|...|++|+++
T Consensus 359 --------------------~~~~lg~~Hp~~-a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 359 --------------------YRIFFPGSHPVR-GVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp --------------------HHHHSCSSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHcCCCChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11111 125554 677999999999999999999999999976
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.21 E-value=2.6e-06 Score=76.95 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---
Q psy11738 118 QLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--- 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 186 (323)
.+.+|...+++++++ .|+++. .+.+||.+|..+|++ ++|+.++++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--------------------~eA~~~~~~aL~i~~~ 372 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--------------------EGALKYGQKIIKPYSK 372 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH--------------------HHHHHHHHHHHHHHHH
Confidence 456888999999884 677765 577889999888655 9999999999986
Q ss_pred --CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 --HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 --~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|++ .+..+++||.+|..+|++++|+.+|++|+.+
T Consensus 373 ~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3443 2467999999999999999999999999875
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.19 E-value=9.2e-06 Score=57.92 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-------CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-------PDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+.-.+.+|..+...+++. .|+..|++|++.. +..+.++..||.+++.+|++
T Consensus 5 a~dc~~lG~~~~~~~~y~----------~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~------------ 62 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYY----------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL------------ 62 (104)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHccchH----------HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH------------
Confidence 445678999999999999 8888899988863 34577899999999999866
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
+.|+.+++++++++|++ ..+..+++
T Consensus 63 --------~~A~~~~~~al~l~P~~-~~~~~n~~ 87 (104)
T 2v5f_A 63 --------DKALLLTKKLLELDPEH-QRANGNLK 87 (104)
T ss_dssp --------HHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCC-HHHHhhHH
Confidence 99999999999999998 67777776
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.01 E-value=6.1e-05 Score=69.31 Aligned_cols=52 Identities=6% Similarity=-0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.+.....|++++...|.. +..|+..+..+...|+.++|...|++|+.. |.+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 345678999999999988 899999999999999999999999999999 8754
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.00 E-value=7.3e-06 Score=74.03 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---
Q psy11738 118 QLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--- 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 186 (323)
...+|...+++++++ .|+++. .+.+||.+|..+|++ ++|+.++++++++
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~--------------------~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL--------------------EEALFYGTRTMEPYRI 361 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH--------------------HHHHHHHHHHHHhHHH
Confidence 445889999999975 466654 577888888888655 9999999999976
Q ss_pred --CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 --HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 --~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|++ ....+++||.+|..+|++++|+.+|++|+.+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3443 2466999999999999999999999999875
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.88 E-value=5.1e-05 Score=55.42 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-CCchhHHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLML 198 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~l 198 (323)
..+.+.|.+.+..++.+..+.+.+|+++....+. .+..++|..++..+..+ |...-..++.|
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-----------------~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-----------------DDIRKGIVLLEELLPKGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-----------------HHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3566778888888889999999999887665433 11266899999999987 63335889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
|..++++|+|++|+.+++..++..|.+..+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999998654
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.78 E-value=0.00016 Score=52.74 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-C-CChhHHHHHhhHHHHhc
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-P-DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~ 151 (323)
.+..+...|.+.+..++-+.++.+.+|.++....+.... .+++..++..++.+ | ..-+..|.||..+++.|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~-------~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDI-------RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHH-------HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHH-------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 455567777777777788899999999999886666532 25778888888887 5 56688999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++ ++|.++++..|+++|++ ..+.....
T Consensus 89 ~Y--------------------~~A~~~~~~lL~~eP~n-~QA~~Lk~ 115 (126)
T 1nzn_A 89 EY--------------------EKALKYVRGLLQTEPQN-NQAKELER 115 (126)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred hH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 65 99999999999999998 56654433
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.72 E-value=0.00038 Score=52.10 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=85.9
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh--------HHHHHhhHHHHhcCCcHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST--------TLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~--------~~~~lg~~~~~~~~~~~~~~ 158 (323)
-+.|++++.+..+...+...|+...- ......++.|++|+..-|-... .|...+.+ ...++
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d----~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D------ 75 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSD----ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQE------ 75 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCH----HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHC------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchh----hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcC------
Confidence 36799999999988888888887311 1122666889999998876421 22223322 22233
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.++|...|+.++.++..+ +.+|...+..-.++|+.+.|.+.+.+|+.+.|....
T Consensus 76 --------------~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 76 --------------PDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp --------------GGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred --------------HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 399999999999998887 899999999999999999999999999999988653
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.70 E-value=0.0026 Score=58.49 Aligned_cols=164 Identities=11% Similarity=-0.036 Sum_probs=120.8
Q ss_pred hhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYA 94 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 94 (323)
..+.+-+.|++++|+.+++.+ .-+-+..++..+-.+|...+..... .+.+.+++|+..++...+ +.| +..
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----~~~~~l~~A~~lf~~M~~~G~~P-d~~ 106 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----SPNPGLSRGFDIFKQMIVDKVVP-NEA 106 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----SCCHHHHHHHHHHHHHHHTTCCC-CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----hhcchHHHHHHHHHHHHHhCCCC-CHH
Confidence 456667789999999999987 2334556666666666655543321 124567888888887654 356 455
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+..+-..|...|+++ +|.+.|++..+.. +-+...|..+-..|...|++
T Consensus 107 tyn~lI~~~~~~g~~~----------~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~-------------------- 156 (501)
T 4g26_A 107 TFTNGARLAVAKDDPE----------MAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA-------------------- 156 (501)
T ss_dssp HHHHHHHHHHHHTCHH----------HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH--------------------
Confidence 6677788888888888 8888888887653 22556666676677777665
Q ss_pred HHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|.+.|.+..+. .|+ ..+|..|-.+|.+.|+.++|.+.+++...
T Consensus 157 ~~A~~l~~~M~~~G~~Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPE--EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999999998775 676 47799999999999999999999998754
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.44 E-value=0.0008 Score=49.29 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=52.7
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
.....+..++|..+...+..+|....+.++.||..+.++|+|++|..+.+..|++.|++.-.
T Consensus 53 S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 53 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33445678999999999999996546789999999999999999999999999998875443
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.41 E-value=0.0013 Score=48.25 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=63.2
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.+.+.+.+++++....+. .+..++|..++..++.+|...-+.++.||..+.++|+|++|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~-----------------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDV-----------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp CHHHHHHHHHHHHHSSCH-----------------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 567888888777665433 123788999999999898654688999999999999999999999
Q ss_pred HHHhCCCCCCchh
Q psy11738 216 EMTKNYPVKQDKD 228 (323)
Q Consensus 216 ~~al~~~~~~~~~ 228 (323)
+..+...|.+..+
T Consensus 102 d~lL~~eP~N~QA 114 (134)
T 3o48_A 102 DTLFEHERNNKQV 114 (134)
T ss_dssp HHHHTTCTTCHHH
T ss_pred HHHHhhCCCCHHH
Confidence 9999999998755
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.40 E-value=0.01 Score=54.52 Aligned_cols=177 Identities=10% Similarity=0.040 Sum_probs=117.1
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 178 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (323)
-..+...|+.. +|.+.|+++.+..- -+...|..|-..|...+... .....+..++|..
T Consensus 33 id~c~k~G~~~----------~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~-----------~~~~~~~l~~A~~ 91 (501)
T 4g26_A 33 LDMCSKKGDVL----------EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT-----------ESSPNPGLSRGFD 91 (501)
T ss_dssp HHHTTTSCCHH----------HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS-----------SSSCCHHHHHHHH
T ss_pred HHHHHhCCCHH----------HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh-----------hhhhcchHHHHHH
Confidence 34556667776 88888988877532 23444544444443322210 0011123488999
Q ss_pred HHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--CCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 179 YFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 179 ~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
.|.+..+. .|+ ..+|..+-..|.+.|++++|...|++..+. .|+.. .+..+ ..++. ..|
T Consensus 92 lf~~M~~~G~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--tyn~l----------I~~~~---~~g 154 (501)
T 4g26_A 92 IFKQMIVDKVVPN--EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--SYGPA----------LFGFC---RKG 154 (501)
T ss_dssp HHHHHHHTTCCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--HHHHH----------HHHHH---HTT
T ss_pred HHHHHHHhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--eehHH----------HHHHH---HCC
Confidence 99987764 576 478999999999999999999999988654 23211 11111 11111 268
Q ss_pred cHHHHHHHHHHHHhh--CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC--CCChhHHHHHHHH
Q psy11738 255 SYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN--YPAVQEATKLLEK 316 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~--~~~~~~~~~~l~~ 316 (323)
++++|.+.|.+.... .|+ ...|..|-.+|.+.|+.++|.+.+++--+ ..|+...-..|..
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPE--EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999987754 565 47789999999999999999999988654 4666655555544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.40 E-value=0.0017 Score=48.61 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=85.8
Q ss_pred hcCCCchhHHHHHHHHHHHHcCCH------HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRLENY------EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
-+.|++ ++.|..........|++ ++-++.|++|+..-|-........+..+ |.. ++.+.. .++.++
T Consensus 7 ~~~p~~-yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~L-WIr----YA~~~e--i~D~d~ 78 (161)
T 4h7y_A 7 MMMANN-PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARI-QVR----FAELKA--IQEPDD 78 (161)
T ss_dssp ---CCS-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHH-HHH----HHHHHH--HHCGGG
T ss_pred eeCCCC-HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHH-HHH----HHHHHH--hcCHHH
Confidence 357888 58888888888888999 9999999999877655432111122111 221 122211 357889
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
|.+.|+.++.++..+ +.+|.+.|..-...|+...|...+.+|+.+.|.+
T Consensus 79 aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 79 ARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 999999999999888 8999999999999999999999999999997763
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.38 E-value=0.0025 Score=47.33 Aligned_cols=99 Identities=9% Similarity=0.008 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHH
Q psy11738 28 QQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE-DHYAIHKWLAVILNE 105 (323)
Q Consensus 28 ~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~ 105 (323)
.+.......|.+- .+.-.+++.|.+|.++....+ .....+++..++..+..+| ..-+.++.+|..++.
T Consensus 20 eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 20 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTD----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK 89 (144)
T ss_dssp HHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSS----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH
Confidence 3334444444433 345688999999999987765 3456789999999999888 577789999999999
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+|++. +|+++.+..++..|+|..+......+
T Consensus 90 l~~Y~----------~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 90 LGEYS----------MAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp TTCHH----------HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999 89999999999999998776655443
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.19 E-value=0.0016 Score=48.33 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=56.0
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAK 318 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 318 (323)
.....+..+++..++..+..+|....+.++.||..+.++|+|.+|..+.+..|++.|++ ++..+.+-++
T Consensus 52 S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 52 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 121 (144)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33455678999999999999996546788999999999999999999999999998875 5544444333
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.87 E-value=0.0055 Score=46.77 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=54.8
Q ss_pred HHHHHHHHHHccCCCChh---------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----
Q psy11738 121 TIKHHMNKAIELKPDDST---------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----- 186 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~---------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 186 (323)
.|+-....++.+..+++. +...+|..++..+++ ..|...|++|+++
T Consensus 38 sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey--------------------rrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 38 NVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY--------------------RNAVSKYTMALQQKKALS 97 (167)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH--------------------HHHHHHHHHHHHHHHHHh
Confidence 455555555555433333 688899999988766 8888888887654
Q ss_pred -CCC---------ch---------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 187 -HPL---------FY---------SQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 187 -~p~---------~~---------~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.|. .. .+..+.++.||..+|++++|+..++..
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111 00 157899999999999999999998764
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.037 Score=53.03 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++|+-|++.-++|+...|... .+|+.|+.||..+|+|+.|+=.++..
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF-~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSF-ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhh-HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 567999999999999999984 99999999999999999999999887
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.68 E-value=0.022 Score=43.51 Aligned_cols=119 Identities=15% Similarity=0.033 Sum_probs=71.8
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
+-|..++....++...+..|++ ..|+-++. ..+..++.+.-+.||...+++..|
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY--------------------~R~Lf~L~------~lNT~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEY--------------------TRALFHLH------KLNTCTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCH--------------------HHHHHHHH------TCCBHHHHHHHHHHHHHTTCHHHH
T ss_pred HccCChHHHhhhhhhhhhcchH--------------------hHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788877777654 66655442 223468888899999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+.++++.+.-+.+...+.-..+ ...-++|.+....+..+|......|+.
T Consensus 82 ~~~le~il~~kvd~d~~~d~~~-------------------------------~~ffvd~~DkEfFy~l~a~lltq~g~r 130 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDARI-------------------------------QEMFVDPGDEEFFESLLGDLCTLSGYR 130 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHHH-------------------------------HTTSCCTTCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcccccCccccccc-------------------------------ceeeeccchHHHHHHHHHHHHHHhcCH
Confidence 9999999943222110000000 011234554233345567777777777
Q ss_pred HHHHHHHHHhhCCCCh
Q psy11738 292 EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~ 307 (323)
++|+.+|.+...+.|-
T Consensus 131 ~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 131 EEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHhhhHhhhhcCCccc
Confidence 7777777776665544
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.006 Score=46.53 Aligned_cols=106 Identities=11% Similarity=-0.026 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLF--------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~--------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
+.|+.|+.....++.+..++ ...++..+|..+...|+|..|...|++|+.....-..... .....
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s-~~~~~------ 106 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK-VRPST------ 106 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC-ccccc------
Confidence 56799999998877763222 1147899999999999999999999999765211000000 00000
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
+. ...+. ....+ +.. .+..+.++.||.++|++++|+..++.
T Consensus 107 ------~~--~ss~p-------~s~~~-~~e-~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 107 ------GN--SASTP-------QSQCL-PSE-IEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------CC-CCH-HHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ------cc--cCCCc-------ccccc-cch-HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 00 00000 01122 222 46788999999999999999999866
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.14 Score=49.13 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--Hc-CCHHHHHHHHHHHhC--------CCCCCchhhhhh--hcchhHH
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYM--RL-ENYEQAAYYLEMTKN--------YPVKQDKDQCFE--ITDMPWY 239 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~--~~-g~~~~A~~~~~~al~--------~~~~~~~~~~~~--~~~~~~~ 239 (323)
++.|+..|++..+.+|.. .+++..+.+.. .. .+--+|+..+.++++ +.+.+....... ...+-..
T Consensus 265 ~~~a~~~le~L~~~~p~~--~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH--DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 488999999999999975 34443333322 22 233467777777763 233332111100 0000001
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
+ +.-+. ..++|+-|+...++|+...|.. -..|+.|+.||..+|+++.|+-.+...-
T Consensus 343 Q---a~FLl---~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 Q---TNFLL---NRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp H---HHHHH---HTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred H---HHHHh---ccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 11112 2689999999999999999998 4899999999999999999998877763
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.33 E-value=0.54 Score=41.44 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 172 ~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~ 245 (323)
+|.+|.+.+.+.++- ++.....++.....+|..++++.++...|.+|......- .+... .+.+.++ .++.
T Consensus 114 ~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i--~a~i~~~-~Gi~- 189 (394)
T 3txn_A 114 LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV--QGALDLQ-SGIL- 189 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH--HHHHHHH-HHHH-
T ss_pred hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH--HHHHHHH-hhHH-
Confidence 448888888887763 222333667778888999999999999999886552110 00000 1111111 1111
Q ss_pred HhhccC-CCCcHHHHHHHHHHHHhhCCcch----hhhhHHHHHHHHHhcCH
Q psy11738 246 AIFDTL-PTSSYEEALKYFLEAEKQHPLFY----SQNVLMLGKTYMRLENY 291 (323)
Q Consensus 246 ~~~~~~-~~~~~~~Al~~~~~a~~~~p~~~----~~~~~~lg~~y~~~g~~ 291 (323)
.. ..++|.+|..+|-.++....... .....+++.|-+..++.
T Consensus 190 ----~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 190 ----HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp ----HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred ----HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 12 26789999988888864432210 12345566666666654
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.28 Score=43.91 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
.-..++..+|.+++..|++ ++|.+.|.++... .++.....++.+..++...+++..+.
T Consensus 129 e~~~~~~~la~~~~~~Gd~--------------------~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDK--------------------DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCC--------------------TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445788999999999887 9999999998875 44444577888889999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.+++++..+.....+... ...+..+. ++ -....++|.+|-..|..+.....
T Consensus 189 ~~~~ka~~~~~~~~d~~~--~~~lk~~~-gl-----~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWER--RNRYKTYY-GI-----HCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHTTCCCTHH--HHHHHHHH-HH-----GGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhcCCCHHH--HHHHHHHH-HH-----HHHHhChHHHHHHHHHHHhccCC
Confidence 999999655322221111 00111111 11 11236889999999998876543
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.00 E-value=0.3 Score=44.51 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...|..+|.+|+.+.|++...+..||.+....++. -+|+-+|-+++....-+ +.+..+|
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~--------------------l~a~y~y~rsl~~~~Pf-~~a~~nL 226 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH--------------------LTTIFYYCRSIAVKFPF-PAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHSSSBCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc--------------------HHHHHHHHHHHhcCCCC-hhHHHHH
Confidence 34899999999999999999999999998887655 77888888888765555 5777777
Q ss_pred HHHHHH
Q psy11738 199 GKTYMR 204 (323)
Q Consensus 199 g~~y~~ 204 (323)
...+..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.70 E-value=1.8 Score=33.13 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
-|.+++....+++.+...|.+. .+ +-....++ ...+.+.-..|+....
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~----------R~---Lf~L~~lN--T~Ts~YYk~LCy~klK----------------- 76 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYT----------RA---LFHLHKLN--TCTSKYYESLCYKKKK----------------- 76 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHH----------HH---HHHHHTCC--BHHHHHHHHHHHHHTT-----------------
T ss_pred ccCChHHHhhhhhhhhhcchHh----------HH---HHHHHhcc--hHHHHHHHHHHHHHHH-----------------
Confidence 3555577788899999888877 33 33344443 4445566666776665
Q ss_pred CCCCHHHHHHHHHHHHhc-----------------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----------------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----------------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|..|+..+++.++- +|.+....+..+|..+.+.|+-++|+.++......+|--
T Consensus 77 ---dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 77 ---DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp ---CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ---HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 459999999999832 344432346678999999999999999999988776543
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.65 E-value=0.93 Score=37.46 Aligned_cols=112 Identities=14% Similarity=0.004 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
.++.++|+......++-+|.+ +.....|...++-.|+++.|..-++.+.+++|.......
T Consensus 10 ~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~------------------- 69 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS------------------- 69 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH-------------------
T ss_pred CCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH-------------------
Confidence 456699999999999999998 788899999999999999999999999999887543211
Q ss_pred cCCCCcHHHHHH--HHHHHHhh---------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 250 TLPTSSYEEALK--YFLEAEKQ---------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 250 ~~~~~~~~~Al~--~~~~a~~~---------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.|..+|. .++..+-. .|.. ......-+......|+.++|...-.+|++..|.
T Consensus 70 -----~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 70 -----QLRHLVKAAQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHHHHHHHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 0111211 11111110 1222 223445567777889999999999999887654
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.56 E-value=0.3 Score=44.54 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEKA 317 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~ 317 (323)
...+..|..+|.+|..+.|+. +..+..||.+....|+.-+|+.+|.+++-. .|...+.+-|...
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 346789999999999999999 799999999999999999999999999977 7777776555443
No 242
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=2.7 Score=38.32 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhc-----------cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc-----cCCCC
Q psy11738 73 QLILSAYFLVYNAL-----------PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE-----LKPDD 136 (323)
Q Consensus 73 ~~~~~A~~~~~~al-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-----l~p~~ 136 (323)
+.+++|..+...++ .+|+-++.+|+.++.++...|...............+..+..+++ .|+..
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 45677777766554 125556667777777776666654211111111112222333332 23332
Q ss_pred h-hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHH
Q psy11738 137 S-TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 137 ~-~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~ 209 (323)
. ..+..+-+.|...+.+ +.|.+...++. .|.. ....++++|.++.-.++|.
T Consensus 230 qa~l~nllLRnYL~~~~y--------------------~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~ 287 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEV--------------------DSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYS 287 (523)
T ss_dssp HHHHHHHHHHHHHHSSCS--------------------TTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHccCcH--------------------HHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHH
Confidence 2 2344455566665544 88999999885 3321 1244777899999999999
Q ss_pred HHHHHHHHHhCCCCCCch
Q psy11738 210 QAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 210 ~A~~~~~~al~~~~~~~~ 227 (323)
+|.+++..|+...|.+..
T Consensus 288 eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHhCCcchh
Confidence 999999999999887654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.4 Score=43.16 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=26.6
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHS 63 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~ 63 (323)
...+.+.++..+ ..|++++|++.+..+ + .+....+...+...+...+++.
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~ 73 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWD 73 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHH
Confidence 355667777776 458999999877443 2 3345677778888888887653
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.30 E-value=3.9 Score=35.84 Aligned_cols=108 Identities=14% Similarity=0.011 Sum_probs=74.2
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH--------------HHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ--------------RKIANAIFDTLPTSSYEEALKYFLEAE 267 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~Al~~~~~a~ 267 (323)
....|+.+.|...+++|+.+-........ ....|.. ...+...+ ..|++.+++..+..++
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~---~~~~w~~~~r~~l~~~~~~a~~~~~~~~l---~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDL---RDFQFVEPFATALVEDKVLAHTAKAEAEI---ACGRASAVIAELEALT 198 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGG---TTSTTHHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHH
Confidence 34568889999999999888433221100 0000110 01122222 2689999999999999
Q ss_pred hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh-------hCCCChhHHHHHHHH
Q psy11738 268 KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-------KNYPAVQEATKLLEK 316 (323)
Q Consensus 268 ~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~l~~ 316 (323)
..+|-. ...+..|-.+|...|+..+|...|++. +-+.|..+...+...
T Consensus 199 ~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 199 FEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999987 788999999999999999999887765 456777776655544
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.31 E-value=3.8 Score=39.27 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=14.7
Q ss_pred CChhHHHHHhhHHHHhcCC
Q psy11738 135 DDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~ 153 (323)
+++..|..+|..+...+++
T Consensus 679 ~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCH
T ss_pred CcHhHHHHHHHHHHHcCCH
Confidence 5677888888888887766
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.92 E-value=3.4 Score=31.78 Aligned_cols=44 Identities=14% Similarity=-0.052 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+++.|.+..+.. ++ ...|..||......|+++-|..+|.++-.
T Consensus 19 g~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp TCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3458888776554 33 47799999999999999999999998744
No 247
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.46 Score=43.25 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
|+..-+..+..+-..|...+.+++|.....++. .|.....
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~s-------------------------------------- 265 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVS-------------------------------------- 265 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSC--------------------------------------
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCC--------------------------------------
Confidence 444324567778899999999999999999884 3332100
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++.. ...++++|.++...++|.+|..++..|+...|.
T Consensus 266 ---n~q~-~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 266 ---SSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp ---HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred ---HHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 0011 345677788888888888888888887776543
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.76 E-value=2.5 Score=34.86 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+.+++|+......++.+|.|+.....+..++...|+++ .|...++-+.+++|+....-..+..+
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~----------RA~~QL~~~a~l~p~~~~~a~~yr~l------ 74 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE----------RADEQLMQSIKLFPEYLPGASQLRHL------ 74 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCGGGHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCchhhHHHHHHHHH------
Confidence 35788999999999999999999999999999999999 88899999999999874433221111
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--CCC---ch-h-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--HPL---FY-S-QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~---~~-~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
=.|...=...+.- .|. .+ + ...+.-+......|+.++|...-..|+...|..
T Consensus 75 ---------------------I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 75 ---------------------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---------------------HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---------------------HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111222221 111 11 1 234444666778899999999999998887665
Q ss_pred c
Q psy11738 226 D 226 (323)
Q Consensus 226 ~ 226 (323)
.
T Consensus 134 ~ 134 (273)
T 1zbp_A 134 G 134 (273)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.74 E-value=5 Score=30.87 Aligned_cols=96 Identities=5% Similarity=-0.086 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+++.|.+..+.. ++...|..+|..-...|++. -|.++|.++-..+ .+..+|...|+.
T Consensus 20 ~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~----------lAe~cy~~~~D~~--------~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 20 NLDAALDEAKKL-----NDSITWERLIQEALAQGNAS----------LAEMIYQTQHSFD--------KLSFLYLVTGDV 76 (177)
T ss_dssp CHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHH----------HHHHHHHHTTCHH--------HHHHHHHHHTCH
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChH----------HHHHHHHHhCCHH--------HHHHHHHHhCCH
Confidence 445677776654 46667888888888888777 6666666654221 333334444432
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
+-+....+.-+...+ +.....++..+|+++++++.|.+.
T Consensus 77 ---------------------e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 ---------------------NKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ---------------------HHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 222222222232333 223456677889999999988664
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.45 E-value=10 Score=33.22 Aligned_cols=168 Identities=10% Similarity=0.115 Sum_probs=95.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhCC-----CCCC--HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESSE-----YKED--VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~~--~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
..+++.|..+...|++++-..++...+ .|.. +...-.+-..+... ..+ .+....-..+++++.+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~---~~~--~~~~~~~~~~~~~~a~~--- 91 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM---DAG--TGIEVQLCKDCIEWAKQ--- 91 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS---CCC--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC---CCc--HHHHHHHHHHHHHHHHH---
Confidence 446888999999999999999998762 1111 22222222222221 221 23333334444444442
Q ss_pred CCCCcHH--HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----cCCCC--hhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 88 QHEDHYA--IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----LKPDD--STTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 88 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----l~p~~--~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
-.-..-. .-..+|.+|...|++. +|.+.+.+..+ ++... .+.+..-..+|...+++
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~----------~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~------ 155 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYT----------EALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL------ 155 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH------
Confidence 2211111 2237899999999998 44444444433 23221 12234445566666655
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHH-HcCCHHHHHHHHHHHhC
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQH------PLFYSQNVLMLGKTYM-RLENYEQAAYYLEMTKN 220 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~ 220 (323)
.++...+.+|.... |.--+.....-|..+. ..++|..|..+|-.+++
T Consensus 156 --------------~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 156 --------------PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp --------------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 77777777776542 2211233555677788 89999999999988864
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=2.2 Score=38.09 Aligned_cols=121 Identities=8% Similarity=-0.001 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWC 147 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~ 147 (323)
....+++.+..+++-..-+..-..++..+|.++...|++. .|.+.|.++....+.. .+.+..+-+++
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~----------~A~~~~~~~~~~~~~~~~kid~~l~~irl~ 178 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKD----------NAEKTLGKSLSKAISTGAKIDVMLTIARLG 178 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCT----------THHHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4566777777776644445556667889999999999999 6777777777654432 34455556666
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ---HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
...+++ ..+..++.++..+ .++.. .......|.++...++|..|-.+|-.++..
T Consensus 179 l~~~d~--------------------~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 179 FFYNDQ--------------------LYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHTCH--------------------HHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHhccH--------------------HHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 666665 7777788777654 22211 122445677788999999999999887654
No 252
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=85.44 E-value=6.6 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=20.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
....+.+..++.+|...=..|+|++|+.+|..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQE 40 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445556667777777677888888765544
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.18 E-value=2.6 Score=36.98 Aligned_cols=50 Identities=12% Similarity=-0.000 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.|++.+|+..+..++..+|-+ ...+..+-.+|...|+..+|+..|++...
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999997 68899999999999999999999988744
No 254
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.76 E-value=5.4 Score=38.18 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
+++|.+..+. .++ ...|..+|..+...|+++.|+.+|.++-.
T Consensus 668 ~~~A~~~~~~-----~~~-~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 668 LTLARDLLTD-----ESA-EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHTT-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-----hCc-HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3777766432 233 47799999999999999999999998743
No 255
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=80.68 E-value=4.8 Score=26.61 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=20.9
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
....+.+..++.+|...=..|+|++|+.+|..
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33445555667777666677888888766555
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.83 E-value=11 Score=38.18 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=71.4
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCc--hhh-h--------hhhcchhHHHHHHHHHhhccCCC
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQD--KDQ-C--------FEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~--~~~-~--------~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
.-|.+ +..-+.+|.++...|++++|..+|+++-..- +.+. ... . .....+..|+..+...+.. .
T Consensus 837 ~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~---~ 912 (1139)
T 4fhn_B 837 WLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE---E 912 (1139)
T ss_dssp HSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH---T
T ss_pred hccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH---c
Confidence 34555 4567889999999999999999999985432 1111 000 0 0001122333333333332 4
Q ss_pred CcHHHHHHHHHHHHhhCCcchh----hhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYS----QNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~----~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
+.++.+++..+.|+...+.... ..|..+=..+..+|+|++|...+...
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 6788899999999877543212 25677788899999999998877543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.34 E-value=37 Score=34.32 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=58.6
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-C-------------------
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-H------------------- 187 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~------------------- 187 (323)
..+..-|.++...|.+|+++...|++ ++|..+|+++-.- .
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~ge~--------------------~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSKEA--------------------VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHhhhccCCcHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34567788888899999999998765 8999999886321 0
Q ss_pred CCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 188 PLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 188 p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+.. .+..|+.+...+.+.|.++.+++..+.|++..+.+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 933 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC
Confidence 000 113466677888999999999999999998765544
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.77 E-value=25 Score=35.14 Aligned_cols=94 Identities=9% Similarity=-0.125 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc----CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL----KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l----~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+..+-..|...|+.+ +|.+.|...-+. -.-|...|..|-.-+...|.+
T Consensus 130 ynaLIdglcK~G~le----------eA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~------------------ 181 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLP----------LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF------------------ 181 (1134)
T ss_dssp HHHHHHHHHHHTCHH----------HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCH------------------
T ss_pred HHHHHHHHHhCCCHH----------HHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCH------------------
Confidence 344455666677776 788888665432 123556677777777777655
Q ss_pred CHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCC-HHHHHHHHHHHhCC
Q psy11738 172 SYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNY 221 (323)
Q Consensus 172 ~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~ 221 (323)
++|.+.|.+-.+. .|+ ..+|..+-.++.+.|+ .++|...+++..+.
T Consensus 182 --~eA~~Lf~eM~~~G~~PD--vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 182 --KELVYVLFMVKDAGLTPD--LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp --HHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999999998774 687 4778888889999998 47888888887653
No 259
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=77.04 E-value=13 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=18.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+..+..++.+|-..-..|+|++|+.+|..
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~ 41 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQE 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445566677666667777777765544
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=76.93 E-value=27 Score=34.85 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 172 SYEEALKYFLEAEK-----QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 172 ~~~~A~~~~~~al~-----~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.++|...|.+..+ ..|+ ..+|..|-..|.+.|++++|.+.|++....
T Consensus 142 ~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 142 QLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp CHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 33888888865432 4666 367777778888888888888888877543
No 261
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=74.47 E-value=2.7 Score=27.91 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=31.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhCC-CCCCHHH
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESSE-YKEDVEI 48 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~ 48 (323)
.++..++.+|..++..++|.+|..+++++. ..+|++.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i 88 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEI 88 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHH
Confidence 567788999999999999999999999984 5566543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.52 E-value=45 Score=28.10 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
+.....+|+.+..+.-...-.+++.|..+|..|...+++.
T Consensus 112 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~ 151 (312)
T 2wpv_A 112 LKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVY 151 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHH
Confidence 5566777777776654433457777888888887777666
No 263
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.02 E-value=5.5 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
..+|..+...|++++|+.+|-+|+...|+-.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4589999999999999999999999987753
No 264
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=69.70 E-value=43 Score=28.33 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
..++.++|..|..+.++.|++.|..+ ..++|++++
T Consensus 216 ~a~K~KNy~tAa~fArrLLel~p~~~---~a~qArkil 250 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKIISSGP---RAEQARKIK 250 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSH---HHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHH---HHHHHHHHH
Confidence 35688999999999999999988644 444454443
No 265
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=66.32 E-value=39 Score=25.30 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=56.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.+..+.+..+...|-..+|.+.|..++.. ...-.....+.+|..|.....+.. +-.......+.+..
T Consensus 6 ~P~q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~------------eQKenIln~itlkS 73 (161)
T 2ynq_A 6 QPKQEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTE------------EQRQTVSNNITLKT 73 (161)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCH------------HHHHHHHHTCCTTS
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCH------------HHHHHHHhhCCccC
Confidence 45667889999999999999999999998 355566778889999988765542 12333334444433
Q ss_pred CcHHHHHHHHHHHHHhhccc
Q psy11738 91 DHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ 110 (323)
+-. +.+=.++...|+++
T Consensus 74 de~---yL~YWIyiGRg~~~ 90 (161)
T 2ynq_A 74 DEQ---YMLYWIYIGRSQSE 90 (161)
T ss_dssp CHH---HHHHHHHHHHTCHH
T ss_pred CHH---HHHHHHHHcCCchH
Confidence 222 23334566677777
No 266
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.71 E-value=22 Score=23.34 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=18.1
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+.+..++.+|-..=..|+|++|+.+|..
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455566666666667777777765554
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.80 E-value=56 Score=32.35 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=58.3
Q ss_pred HHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHH
Q psy11738 183 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 261 (323)
Q Consensus 183 al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~ 261 (323)
.+..-|.+ +..-+.+|.+|...|++++|..+|++|-.-- +.+... ...+-..
T Consensus 832 L~~~~~~t-~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~--------------------------~~~~~~~ 884 (950)
T 4gq2_M 832 LIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF--------------------------AVLREFQ 884 (950)
T ss_dssp HGGGCCSS-HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSC--------------------------GGGHHHH
T ss_pred HHhhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccc--------------------------cchhhhh
Confidence 34445665 4566889999999999999999999885321 111100 0000000
Q ss_pred HHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhH
Q psy11738 262 YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQE 309 (323)
Q Consensus 262 ~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~ 309 (323)
.+....+..... ...|......+...+-++-++...+.|+.. .++++
T Consensus 885 ~ll~~~e~~~~~-~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 885 EIAEKYHHQNLL-SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHTTTCSHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred hccCcccccchh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 011111111111 235667788888888999999988888865 44433
No 268
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.91 E-value=7.6 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
-..-.+++.+...|+|++||.+..+
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 3345688999999999999876665
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.28 E-value=11 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
+..+...+..+...|+|++|+++.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456677888999999999987655543
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=61.58 E-value=18 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
...+|..+...|++++|..+|-+|+..-|...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 35678888888888888888888888866543
No 271
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=61.52 E-value=40 Score=23.78 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=16.1
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
..+..++.+|...=..|+|++|+.+|..
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQH 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4445555566555556777777654443
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.65 E-value=91 Score=27.64 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----cCCCC--hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----LKPDD--STTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----l~p~~--~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
.....++.++...|++. +|...+..... ..+.. .+.+....++|...+++
T Consensus 138 rl~~~La~i~e~~g~~~----------eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~-------------- 193 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKID----------EAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY-------------- 193 (445)
T ss_dssp HHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH--------------
T ss_pred HHHHHHHHHHHHccCHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH--------------
Confidence 34466788888888887 55444444332 22221 23444555667776655
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 168 LPTSSYEEALKYFLEAEKQ---HPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~---~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..|...+.++... .+..+ ...+...|..+...++|.+|-.+|..++..
T Consensus 194 ------~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 194 ------SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ------HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7787777775421 22211 134667899999999999999999998764
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.61 E-value=1.3e+02 Score=27.99 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
+..+..+...|....|...+...+.
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHh
Confidence 3445567777777777777666654
No 274
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=55.19 E-value=85 Score=25.62 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
-...++.+....++++ +..++.++..+.++. +.+-...|..+|
T Consensus 33 ~lv~~AKLaeqaeRYd----------dMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYD----------EMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHHHHTTCHH----------HHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHH----------HHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 3456677777777777 777788888888775 334455555554
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.88 E-value=81 Score=31.17 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=59.6
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cC-----------------
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-QH----------------- 187 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~----------------- 187 (323)
....+..-|.++..-|.+|+++...|++ ++|..+|++|-. +.
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~--------------------~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEA--------------------VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCH--------------------HHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 4456788899999999999999998766 888888887542 11
Q ss_pred ---CCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 188 ---PLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 188 ---p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++. ....|+....++...+-++-+++..+.|++.-..+
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d 930 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 930 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Confidence 110 01246677888899999999999999999754433
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.36 E-value=97 Score=26.05 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=23.2
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS 40 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 40 (323)
....+...+.+....+..|+|=+|...++..
T Consensus 9 m~~~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 9 VQAKLAKTLQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 4446778888888889999999988877763
No 277
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=53.36 E-value=44 Score=21.80 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=17.7
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
.+.+..++.+|...=..|+|++|+.+|..
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYN 38 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666666566777777765554
No 278
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.95 E-value=37 Score=31.99 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS 65 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~ 65 (323)
...++.+|...+..|+|+-|..+++.+ .+|+|.++...++.+|..+|....+
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 355788899999999999999999997 5999999999999999999976654
No 279
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=52.30 E-value=38 Score=22.52 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHH
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATK 312 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 312 (323)
+++...-|.-+.+.++|.+|...|+++..+..+.+..+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~k 90 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKK 90 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHH
Confidence 45555666667777777777777777776655555443
No 280
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=52.08 E-value=37 Score=30.50 Aligned_cols=60 Identities=27% Similarity=0.222 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHhh-CCcchhhhhHHHHHHHHHhcCHH-H-HHHHHHHhhCCCChhHHHHHHHHHHhh
Q psy11738 255 SYEEALKYFLEAEKQ-HPLFYSQNVLMLGKTYMRLENYE-Q-AAYYLEMTKNYPAVQEATKLLEKAKSY 320 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~-~p~~~~~~~~~lg~~y~~~g~~~-~-A~~~~~~al~~~~~~~~~~~l~~~~~~ 320 (323)
.|++|+.+++++... +|+. ...+..++.-|...|++- + |..++ ...+++++-+..+++++
T Consensus 454 ~Y~~Ai~~L~k~~~tdd~~~-v~~~~~~ak~yE~aGDyy~~AA~k~~-----yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 454 EYKAAINDLQKAAQQDDYQM-FLNYLNAAKKHEMAGDYYVNAARKAL-----NGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHHHHTTCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCHHH-HHHHHHHhhhhhhccHHHHHHHHHHh-----cCccHHHHHHHHHHHHH
Confidence 356777777776633 3333 455666666666666652 2 22222 23445555555555543
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.93 E-value=39 Score=25.40 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=27.1
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS 40 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 40 (323)
+.......+..+-.+|+.|+|=+|-+.++.+
T Consensus 28 e~~~~~~~~~~~i~lFn~g~yfeaHEvLEe~ 58 (161)
T 2ijq_A 28 EHETLRRAVVHGVRLYNSGEFHESHDCFEDE 58 (161)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4456677899999999999999999999987
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=50.30 E-value=9.7 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
..+|..+...|+++.|+.+|-+|+.+.|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999887655
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.88 E-value=46 Score=22.29 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhCCc
Q psy11738 258 EALKYFLEAEKQHPL 272 (323)
Q Consensus 258 ~Al~~~~~a~~~~p~ 272 (323)
+|+++|..++...|+
T Consensus 40 ~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 344444444444443
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=49.62 E-value=64 Score=27.83 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHhhHHHHhcCCcHHH---HHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 141 FMLGMWCFEITDMPWYQ---RKIANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..|-.+++..|.+..+. ..++...- ..|......++..|.+|+.. +..+ .-.|..+|.++++.+++.+|+
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe-~~pt~gr~~~l~L~~~AI~sa~~yY~n~H-vYPYtylgGy~yR~~~~reAl 316 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEE-ISPTPGRPPAEELFKEAITVAKREYSDHH-IYPYTYLGGYYYRKKKYYEAI 316 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHH-HSCCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHh-cCCCCCCCCHHHHHHHHHHHHHHHhccCC-ccchhhhhhhhhhcchHHHHH
Confidence 44556667777553332 22322211 11222234477788887765 2222 355888999999999999999
Q ss_pred HHHHHHhC
Q psy11738 213 YYLEMTKN 220 (323)
Q Consensus 213 ~~~~~al~ 220 (323)
...-.|-.
T Consensus 317 ~~WA~Aa~ 324 (472)
T 3re2_A 317 ASWVDAGY 324 (472)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=47.67 E-value=21 Score=23.48 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhC
Q psy11738 256 YEEALKYFLEAEKQH 270 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~ 270 (323)
.+.|+....+|++.+
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777776554
No 286
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.39 E-value=71 Score=22.44 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
.++.|+.++.+|++.| ..+++. +.+..+..|+++|.++++..|.++..
T Consensus 14 ~l~kAi~lv~~Ave~D---------------~ag~y~---eAl~lY~~Aie~l~~alk~e~~~~~~ 61 (117)
T 2cpt_A 14 NLQKAIDLASKAAQED---------------KAGNYE---EALQLYQHAVQYFLHVVKYEAQGDKA 61 (117)
T ss_dssp HHHHHHHHHHHHHHHH---------------HHTCHH---HHHHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHH---------------HccCHH---HHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 4567888888876442 223443 34445558888999999888666553
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=47.32 E-value=18 Score=23.55 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
...+|.-|..+|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788899999999999999888753
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.38 E-value=20 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
.-++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 5588899999999999999999999999888764
No 289
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.18 E-value=86 Score=23.12 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++--+.+...+.-+|-+ +..+..+|.+|.+.|+..+|-+.+.+|.+.
T Consensus 108 DqLdki~~~~l~n~~~~-~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 108 DKLEEIGREILKNNEVS-ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHC--CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccCCCC-hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33344444433434333 588999999999999999999999999764
No 290
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=44.84 E-value=1.3e+02 Score=24.60 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--CC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--PD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--p~-~~~~~~~lg~~~ 147 (323)
...++.+....++++ +...+.+++.+.+ |. +.+-...|..+|
T Consensus 11 ~v~~AkLaeqaeRyd----------dm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 11 NVYMAKLAEQAERYE----------EMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHTCHH----------HHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHH----------HHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 455677777777777 7778888888887 53 444455555554
No 291
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.12 E-value=27 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhC
Q psy11738 257 EEALKYFLEAEKQH 270 (323)
Q Consensus 257 ~~Al~~~~~a~~~~ 270 (323)
+.|+....+|++.+
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777776554
No 292
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=42.59 E-value=1.3e+02 Score=24.25 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
...++.+....++++ +...+.++..+.++. +.+-...|...|
T Consensus 7 lv~~AklaeqaeRyd----------dM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 7 LVQKARLAEQAERYD----------DMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHH----------HHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 355666666777777 777788888888775 334455555554
No 293
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=42.47 E-value=1.3e+02 Score=24.07 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
...++.+....++++ +..++.++..+.+|. +.+-...|...|
T Consensus 8 ~v~~AklaeqaeRyd----------dm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 8 LVYQAKLAEQAERYD----------EMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHTCHH----------HHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH----------HHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345677777777777 777888888888765 344455555554
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.65 E-value=20 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
....+.+|..+...+++.+|..++..|+...|.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 345677888888888888888888888877554
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.62 E-value=32 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 279 LMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 279 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..+|..+...|+++.|+.+|-+|+..-|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45666677777777777777777666444
No 296
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.49 E-value=34 Score=24.08 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD 135 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 135 (323)
..+..+++|+.+..++|.+|.. .....| +..+.+.+.++++++.+..+
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE~---g~k~~A---------------l~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDEL---GQKEEA---------------KNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TCHHHH---------------HHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhc---CCHHHH---------------HHHHHHHHHHHHHhcccccc
Confidence 3567789999999999998752 112222 23334677889999999875
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.09 E-value=27 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
...+|.=|...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 556788899999999999999998763
No 298
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=39.83 E-value=59 Score=24.60 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
...|+..+.++...+|.. ....-.+..++....+....+..|...++.+|.
T Consensus 72 L~~a~~~L~~l~~~d~~l-~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 72 IGEAVRALNAGAKYDETV-MQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 346777788888888876 677888999999999999889889888999887
No 299
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=38.55 E-value=1.6e+02 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHh----hCCcchhhh--hHHHHHHHH-HhcCHHHHHHHHHHhhC
Q psy11738 256 YEEALKYFLEAEK----QHPLFYSQN--VLMLGKTYM-RLENYEQAAYYLEMTKN 303 (323)
Q Consensus 256 ~~~Al~~~~~a~~----~~p~~~~~~--~~~lg~~y~-~~g~~~~A~~~~~~al~ 303 (323)
.+.|...|+.|.+ +.|.++... ..+.+..|. -+++.++|....++|++
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777765 466552221 223344444 48999999887666653
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.69 E-value=1.3e+02 Score=26.63 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHhhHHHHhcCCcHH---HHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 141 FMLGMWCFEITDMPWY---QRKIANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..|-++++..|.+..+ ...++...--. |.-.-..++..|.+++.. ...+ .--|..+|.++++.+++.+|+
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~-pt~gr~~~~~L~~~AI~sa~~~Y~n~H-vYPYtYlgGy~yR~~~~reAl 338 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELE-PTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREAL 338 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHS-CCTTCCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcC-CCCCCCCHHHHHHHHHHHHHHHhccCC-ccceeecchhhhhcchHHHHH
Confidence 4455666777765433 23333221111 111113467777777764 2222 355888999999999999999
Q ss_pred HHHHHHhC
Q psy11738 213 YYLEMTKN 220 (323)
Q Consensus 213 ~~~~~al~ 220 (323)
...-.|-.
T Consensus 339 ~~WA~Aa~ 346 (550)
T 3u84_A 339 QAWADTAT 346 (550)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 301
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=35.82 E-value=1.3e+02 Score=22.25 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+-++--..+...+.-+|-. +..+.-+|.+|.+.|+..+|.+.+.+|-+-
T Consensus 106 KkDqLdki~~~~l~n~~~~-~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVS-ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CHHHHHHHHHHHC--CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHhccCCCC-hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333333333333334434 678899999999999999999999998765
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.69 E-value=41 Score=22.19 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=13.0
Q ss_pred HHhcCHHHHHHH-------HHHhhCCCChhHHH
Q psy11738 286 MRLENYEQAAYY-------LEMTKNYPAVQEAT 311 (323)
Q Consensus 286 ~~~g~~~~A~~~-------~~~al~~~~~~~~~ 311 (323)
-..|++++|+.+ |..++...|+....
T Consensus 27 D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k 59 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDLLLQVLKGTKDNTKR 59 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Confidence 344555555544 44555555554443
No 303
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.96 E-value=2.1e+02 Score=24.30 Aligned_cols=33 Identities=3% Similarity=0.226 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhhCC-cchhhhhHHHHHHHHHh
Q psy11738 255 SYEEALKYFLEAEKQHP-LFYSQNVLMLGKTYMRL 288 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p-~~~~~~~~~lg~~y~~~ 288 (323)
.|..-.+.|...++.+| .+ ......+|..|...
T Consensus 262 lF~~L~~~Y~~~l~rd~~~~-~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 262 LFRQLKSKYEANLNELNGIW-DTALELIAEMYFGI 295 (336)
T ss_dssp HHHHHHHHTHHHHHTTTTTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHcCC
Confidence 35555666777777777 54 56777788888764
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.01 E-value=1.9e+02 Score=23.17 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.1
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~ 59 (323)
+.++++..|...-+.++|++.+..++.+ ...-+.+-...+..+|.+.
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNv 56 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNV 56 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhh
Confidence 4567788888888889999999888875 3445677778888888654
No 305
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.23 E-value=1.9e+02 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
...++.+....++++ +..++.++..+.++. +.+-...|...|
T Consensus 11 ~v~~AklaeqaeRyd----------dM~~~mk~v~~~~~eLs~EERnLLSvaY 53 (236)
T 3iqu_A 11 LIQKAKLAEQAERYE----------DMAAFMKGAVEKGEELSCEERNLLSVAY 53 (236)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHH----------HHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 456677777777777 777788888888775 334455555554
No 306
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=31.84 E-value=2.1e+02 Score=23.31 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.1
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~ 59 (323)
+.++++..|...-+.++|++.+..++++ ...-+.+-...+..+|.+.
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNv 79 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV 79 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhc
Confidence 3466777777777789999999888876 2445677778888888654
No 307
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=31.10 E-value=2.4e+02 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=22.2
Q ss_pred chhhhHHHHHHhhhHHHhhccH---HHHHHHHHh
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQF---EEVNKMLES 39 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~ 39 (323)
+-+..+...+.+....+..|+| =+|...++.
T Consensus 7 ~~~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RT 40 (336)
T 3lpz_A 7 HHSNKIERIIARLQRRIAEGQPEEQYEAAQETRL 40 (336)
T ss_dssp ---CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCCccccHHHHHHHH
Confidence 3456777888888889999999 677766665
No 308
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=30.53 E-value=25 Score=23.43 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD 135 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 135 (323)
.+..+..++.|+.+..++|..|..+.......| +..+.+.+.++.+++.+.-.
T Consensus 6 ~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A---------------~~~YkkGi~eL~~Gi~V~~~ 58 (89)
T 3eab_A 6 AERVRVFHKQAFEYISIALRIDEDEKAGQKEQA---------------VEWYKKGIEELEKGIAVIVT 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGS---------------HHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHH---------------HHHHHHHHHHHHhhcCCccC
Confidence 345677889999999999988754211111111 22333666778888887544
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.37 E-value=2.5e+02 Score=23.69 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.6
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
..++.++|..|..+-++.|++.|..+ ..++|++++
T Consensus 207 ~a~K~KNy~tAa~fArrLLel~p~~~---~~~qArkil 241 (320)
T 3mkr_B 207 LFFKLKNFRTAAAFARRLLELGPKPE---VAQQTRKIL 241 (320)
T ss_dssp HHHHTTBHHHHHHHHHHHHHTCCCHH---HHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHH---HHHHHHHHH
Confidence 35688999999999999999988744 444455544
No 310
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=29.22 E-value=2.1e+02 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
..++..|.+|+.. ...+ ...|..+|.++.+.+++.+|+.++-.+-.
T Consensus 281 p~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 281 PDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCc-ccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4567788887774 2222 35588899999999999999999988754
No 311
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.08 E-value=4.3e+02 Score=26.13 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHhhccHHHHHHHHHhCCC---CCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC------
Q psy11738 24 LFEEQQFEEVNKMLESSEY---KED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE------ 90 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~---~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------ 90 (323)
.+..|+.++++..+.+... .++ ..+++.+|.++...+ .+++.++...+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---------------~~~~~lL~~~L~~~~~~~~~~ 448 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---------------RDTTDYLKNIIVENSGTSGDE 448 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---------------HHHHHHHHHHHHHHSSCCSCH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHcCcccccccc
Q ss_pred --CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh--HHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 91 --DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST--TLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~--~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.....-..+|.-+...|.-.. ++.+.+...+.-+..... +-+.||.++...++
T Consensus 449 ~~~~ir~gAaLGLGla~~GS~~e---------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------------- 505 (963)
T 4ady_A 449 DVDVLLHGASLGIGLAAMGSANI---------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------------- 505 (963)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCH---------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------------
T ss_pred ccHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--------------
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
.++++.+...+.-+.+....-...+|..+...|+.+.+-...+..... .++..++....-+++.+.+
T Consensus 506 -------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaG---- 572 (963)
T 4ady_A 506 -------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAG---- 572 (963)
T ss_dssp -------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTT----
T ss_pred -------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcC----
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CCh
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAV 307 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~ 307 (323)
+|+...--..+..+.+-..++ .+-.-.+|......|+.+.+...+....+. +|+
T Consensus 573 ------TGn~~aIq~LL~~~~~d~~d~-VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~ 627 (963)
T 4ady_A 573 ------TGNNSAVKRLLHVAVSDSNDD-VRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH 627 (963)
T ss_dssp ------SCCHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH
T ss_pred ------CCCHHHHHHHHHHhccCCcHH-HHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH
No 312
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.92 E-value=2.3e+02 Score=22.87 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=34.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~ 59 (323)
.++++..|...-+.++|++....++++ ...-+.+-...+..+|.+.
T Consensus 4 re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNv 52 (248)
T 3uzd_A 4 REQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNV 52 (248)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhh
Confidence 356777787788889999999888876 2445677778888888654
No 313
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=28.29 E-value=2.3e+02 Score=22.64 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=35.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS-E--YKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~-~--~~~~~~~~~~la~~y~~~ 59 (323)
-++++..|...-+.++|++.+..++++ . ..-+.+-...+..+|.+.
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnv 53 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV 53 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 456677777777889999999999886 2 345677777888888664
No 314
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=28.12 E-value=2.4e+02 Score=22.91 Aligned_cols=46 Identities=20% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS---E--YKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~---~--~~~~~~~~~~la~~y~~~ 59 (323)
-++++..|...-+.++|++.+..++++ . ..-+.+-...+..+|.+.
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNv 58 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNV 58 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHh
Confidence 566777787788889999999999886 2 245677778888888664
No 315
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.48 E-value=1.5e+02 Score=26.29 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+..+..++.|+..=|.. ...++..++.+|+.+|++++|+.+.++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 466667777777653321 125788899999999999999999998874
No 316
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=25.87 E-value=67 Score=23.57 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=21.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+..++..|..+...|+.+.|+.+|-+
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymR 67 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMK 67 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678888888999999999987776
No 317
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.82 E-value=62 Score=30.46 Aligned_cols=38 Identities=13% Similarity=-0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
|.|+-|.+....++..+|+|.++...++.+|..+|--.
T Consensus 463 g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 463 GEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 35677999999999999999999999999999888655
No 318
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.52 E-value=1.3e+02 Score=27.02 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCc----------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLF----------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+.-+..++.|+..=|.. ...++..++.+|+.+|++++|+.+.++++.
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666666666653321 125788899999999999999999999874
No 319
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.50 E-value=4.3e+02 Score=24.54 Aligned_cols=48 Identities=4% Similarity=-0.110 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
+++.|..+|...-.-.+.. ....+-+|.++...|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~-~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEK-DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcccccccc-HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4499999997754422232 46788899999999999999999999876
No 320
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.14 E-value=2e+02 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
-.|.++|-.+.+.+++.+|+.+|..|-
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhhh
Confidence 347788999999999999999888774
No 321
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.74 E-value=1.3e+02 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.++-.+|.+|+.+|++++|..+.++++.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4678899999999999999999999874
No 322
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.56 E-value=2.1e+02 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
--|..+|-+|.+.+++.+|+.+|..|-.
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cceeecchhhhhcchHHHHHHHHHHHHH
Confidence 3478889999999999999998877653
No 323
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.55 E-value=64 Score=28.84 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------CchhHHHHHHHHHHHHcCCHHHH
Q psy11738 142 MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP----------LFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 142 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
.+-.+|++.++. .-+...++..-...+ .. ..-++++|.++...++|.+|
T Consensus 181 ~L~kiYFkl~~~--------------------~lckni~k~i~~~~~~p~~~~~p~~q~-v~Y~YYlGr~~~~~~~y~~A 239 (455)
T 3t5v_B 181 KLNNIYFRIESP--------------------QLCSNIFKNFQPKSMLAHFNEYQLDQQ-IEYRYLLGRYYLLNSQVHNA 239 (455)
T ss_dssp HHHHHHHHSSCC--------------------TTHHHHHHTHHHHCCCSCGGGSCHHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCH--------------------HHHHHHHHHhccCCCCcChhhCCccce-EeeeHHHHHHHHHHccHHHH
Q ss_pred HHHHHHHhCC-CCCC
Q psy11738 212 AYYLEMTKNY-PVKQ 225 (323)
Q Consensus 212 ~~~~~~al~~-~~~~ 225 (323)
.+++..|+.. .|.+
T Consensus 240 ~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 240 FVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCcc
No 324
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.51 E-value=1.7e+02 Score=25.79 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCcc-------hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 256 YEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
|+..+..++.|+..-|.. ...++..+|.+|+.+|++++|..+.++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344555555555543321 134678899999999999999999988864
No 325
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.07 E-value=79 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
+..++..|..+...|+.+.|+.+|-+
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R 65 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNK 65 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35667777788888888888876665
No 326
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.51 E-value=1.8e+02 Score=25.72 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+.-+..++.|+..=|.. ...++..++.+|+.+|++++|+.+.++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 456666677777653321 125788899999999999999999998864
No 327
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.41 E-value=1.9e+02 Score=25.63 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+.-+..++.|+..=|.. ...++..++.+|+.+|++++|+.+.++++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 566777788887764431 125788899999999999999999999874
No 328
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.23 E-value=3.4e+02 Score=23.48 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.|..+|..|.+.+++.+|+.+|..|-.
T Consensus 298 PYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 298 PYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 478899999999999999999988754
No 329
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.72 E-value=20 Score=33.89 Aligned_cols=51 Identities=6% Similarity=0.022 Sum_probs=44.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSS 64 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~ 64 (323)
...++++|...+..|+|+-|..+++.+ .+|+|.++...++.+|..+|....
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 356788899999999999999999997 599999999999999999986544
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.71 E-value=1.7e+02 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCcc-------hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 256 YEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
|+..+..++.|...-|.. ...++..+|.+|+.+|++++|..+.++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344455555555443321 124678899999999999999999988864
No 331
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.33 E-value=3.5e+02 Score=21.97 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=35.3
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC---C---CCCCHHHHHHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS---E---YKEDVEIIWRLVRVKYNL 59 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~---~~~~~~~~~~la~~y~~~ 59 (323)
.-++++..|...-+.++|++.+..++++ . ..-+.+-...+..+|.+.
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNv 79 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNA 79 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Confidence 3566777777777889999999988886 2 345677778888888664
No 332
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.00 E-value=1.4e+02 Score=20.96 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+++|..+..+++.++.. |.--..+.-|.+.+..+.+++.++..
T Consensus 18 ~h~~AF~~Is~AL~~DE~---------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL---------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhhhhc---------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 467888888888877642 22222233445567778888888663
Done!