RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11738
(323 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 5e-09
Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 80/257 (31%)
Query: 23 DLFEEQQFEEVNKMLESS-------EYK----------EDV-------EIIW-------- 50
D ++ +++ ++ESS EY+ +IW
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 51 RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110
+V K H SL + K+ +S + + E+ YA+H+ + N T +
Sbjct: 405 MVVVNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 111 GTKARIQQLET-----IKHHMNKAIELKPDDSTTLF-MLGMWCFEITDMPWYQRKIANA- 163
L+ I HH+ + + TLF M+ D + ++KI +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI---EHPERMTLFRMV------FLDFRFLEQKIRHDS 511
Query: 164 ----------------------IFDTLPT-SSYEEALKYFLEAEKQHPLFYS-----QNV 195
I D P A+ FL +++ + +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 196 LMLGKTYMRLENYEQAA 212
LM + E ++Q
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588
Score = 47.5 bits (112), Expect = 4e-06
Identities = 44/359 (12%), Positives = 98/359 (27%), Gaps = 95/359 (26%)
Query: 8 KTVSKVSEEFLKKSDDLFEEQQF-------EEVNKMLESSEYKEDVE-IIWRLVRVKYNL 59
K + V E+ + D + Q EE++ ++ S + + W L+ + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 60 ATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATL-EGTKARIQQ 118
+ ++S Y + + N+ + +R+Q
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQP 136
Query: 119 LETIKHHMNKAIELKPDDSTTLF-MLGM--WC--------FEITD-MP----WY---QRK 159
++ +EL+P + + +LG +++ M W
Sbjct: 137 YLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219
+ + L + L Y ++ +S N+ +R+ + + L +K
Sbjct: 194 SPETVLEML------QKLLYQIDPNWTSRSDHSSNI------KLRIHSIQAELRRLLKSK 241
Query: 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFD----TLPTSSY------------------- 256
Y C + K NA F+ L T+ +
Sbjct: 242 PYE------NCLLVLLNVQN-AKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 257 -------EEALKYFL------------EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296
+E L E +P S + +N++
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 42.3 bits (100), Expect = 1e-04
Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 35/175 (20%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEA 183
+ A++ PD+ + +F + + AL +
Sbjct: 27 HAAVDGDPDNYIAYYRRA------------------TVFLAM--GKSKAALPDLTKVIAL 66
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWY 239
+ Q G ++ ++A + L+ + +++ + D
Sbjct: 67 KMDFTAARLQ----RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
R A FD + Y A+ + + + + ++ + + +++ +A
Sbjct: 123 LRSQALDAFD---GADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKA 173
Score = 39.2 bits (92), Expect = 0.001
Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY---FLEA 183
A +LK D++ + + + ++ S E LK
Sbjct: 178 KAASKLKSDNTEAFYKISTLYY-------QLGDHELSL------SEVRECLKLDQDHKRC 224
Query: 184 EKQHPLFYS-QNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241
+ ++ + +R Y A + Y + K P E T +
Sbjct: 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP------SVAEYTVRSKERI 278
Query: 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEM 300
+ EA++ E + P + + Y+ E Y++A Y
Sbjct: 279 --CHCFSKD---EKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAA 332
Query: 301 TKNYPAVQEATKLLEKAKSYLKK 323
++ Q+ + LEKA+ LK+
Sbjct: 333 QEHNENDQQIREGLEKAQRLLKQ 355
Score = 34.2 bits (79), Expect = 0.049
Identities = 19/177 (10%), Positives = 51/177 (28%), Gaps = 32/177 (18%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183
++K +E+ D+ + + + +A+ A
Sbjct: 141 TFLDKILEVCVWDAELRELRAECFIKEGE--------------------PRKAISDLKAA 180
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE---ITDMPWYQ 240
K ++ + Y +L ++E + + QD +CF
Sbjct: 181 SKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237
Query: 241 RKIANAIFDTLPTSSYEEALKYF---LEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
+ A + Y +A + ++ E + ++ + + + E +A
Sbjct: 238 IESAEELIR---DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 41.3 bits (97), Expect = 2e-04
Identities = 18/170 (10%), Positives = 49/170 (28%), Gaps = 25/170 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM-----LGKTYMRLENYEQAAYY----LEMTKNYPV 223
Y++AL + A + + + + +Y R + + A + ++++
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257
Query: 224 KQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283
F ++ + A EE L + + + + K
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAF------QFIEEGLDHITARSHKFYKELFLFLQAVYK 311
Query: 284 TYMRLENYEQAAYYLEMTKNYPAVQEATKLL----------EKAKSYLKK 323
+ Y E + ++ + E+A ++ +K
Sbjct: 312 ETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 39/206 (18%)
Query: 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---L 181
+ + ++L D + A + Y +A + +
Sbjct: 233 EVRECLKLDQDHKRCFAHYKQ-----VKKLNKLIESAEELIRD---GRYTDATSKYESVM 284
Query: 182 EAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMP 237
+ E + ++ + + + E +A L+M +
Sbjct: 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV-------------NA 331
Query: 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297
R A I + Y+EA++ + A++ + Q L K L+ ++ YY
Sbjct: 332 LKDRAEAYLIEE-----MYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYY 385
Query: 298 LEMTKNYPAVQEATKLLEKAKSYLKK 323
+ V+ K E K+Y K
Sbjct: 386 KIL-----GVKRNAKKQEIIKAYRKL 406
Score = 40.8 bits (96), Expect = 4e-04
Identities = 14/172 (8%), Positives = 56/172 (32%), Gaps = 29/172 (16%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEA 183
+ A++ PD+ + +F + + AL ++
Sbjct: 50 HAAVDGDPDNYIAYYRRA------------------TVFLAM--GKSKAALPDLTKVIQL 89
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ Q G ++ ++A + ++ K+ P + ++ + ++
Sbjct: 90 KMDFTAARLQ----RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
+ + + + Y A+ + + + + ++ + + +++ +A
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKA 196
Score = 38.5 bits (90), Expect = 0.002
Identities = 26/204 (12%), Positives = 67/204 (32%), Gaps = 29/204 (14%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183
++K +E+ D+ + + + +A+ A
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGE--------------------PRKAISDLKAA 203
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKI 243
K ++ + Y +L ++E + + QD +CF K+
Sbjct: 204 SKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260
Query: 244 ANAIFDTLPTSSYEEALKYF---LEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLE 299
+ + + Y +A + ++ E + ++ + + + E +A E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 300 MTKNYPAVQEATKLLEKAKSYLKK 323
+ + P A L ++A++YL +
Sbjct: 321 VLQMEPDNVNA--LKDRAEAYLIE 342
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 40.7 bits (95), Expect = 5e-04
Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 44/304 (14%)
Query: 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86
E E + K E + + + R + N A + Q+ + V
Sbjct: 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Query: 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146
+ E+ K Q E K KA+E KP + L +
Sbjct: 128 SS-----PYRIESPELDCEEG-WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181
Query: 147 CFEITDMPWYQRKI--------------------ANAIFDTLPTS-SYEEALKYFLEAEK 185
+ + + P Q I A + E K EA +
Sbjct: 182 SYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPV------KQDKDQCFEITD 235
+ P + + K Y R + ++A LE N + + F++ +
Sbjct: 242 KAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295
+ + + A+ + +A++ + + +L + + YE+A
Sbjct: 301 LRENGMYGKRKLLE-----LIGHAVAHLKKADEANDNLFRVCS-ILASLHALADQYEEAE 354
Query: 296 YYLE 299
YY +
Sbjct: 355 YYFQ 358
Score = 32.6 bits (74), Expect = 0.19
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 19/141 (13%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM--------LGKTYMRLENYEQAAYYLEMTKNYPVK 224
E AL+ +AE+ ++ + Y + Y++ K+
Sbjct: 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV--- 123
Query: 225 QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEAEKQHPLFYSQNVLML 281
+K + P + + E A F LE + ++P F S L
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLK-CGGNQNERAKVCFEKALEKKPKNPEFTSG----L 178
Query: 282 GKTYMRLENYEQAAYYLEMTK 302
RL+N+ + ++ +
Sbjct: 179 AIASYRLDNWPPSQNAIDPLR 199
Score = 27.2 bits (60), Expect = 9.6
Identities = 20/182 (10%), Positives = 43/182 (23%), Gaps = 50/182 (27%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK---------HHMNKAIELKPD 135
AL ++ +H + K K H+ KA E +
Sbjct: 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332
Query: 136 DSTTLFMLGMWCFEITD----MPWYQRKIANAIFDTLPTS--------------SYEEAL 177
+L ++Q++ + + ++A+
Sbjct: 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392
Query: 178 KYFLEAEKQHPLFYSQNVL-----------------------MLGKTYMRLENYEQAAYY 214
+F+E K + + + +L E +QA
Sbjct: 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452
Query: 215 LE 216
E
Sbjct: 453 SE 454
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 39.4 bits (91), Expect = 0.001
Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 42/212 (19%)
Query: 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101
Y++ +E+ NLA+ L K Q L Y A+ + +
Sbjct: 32 YRKALEVFPEFAAAHSNLAS---VLQQQGKLQEALMHY---KEAIRISPTFADAYSNMGN 85
Query: 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161
L E +Q ++ +AI++ P + L + I
Sbjct: 86 TLKE----------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-------SGNIP 128
Query: 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ--NVLM-LGKTYMRLENYEQA----AYY 214
AI +SY ALK + P Y + L + E ++ A
Sbjct: 129 EAI------ASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178
Query: 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246
LE + V + +++ IA
Sbjct: 179 LEKNRLPSVHPHHSMLYP--LSHGFRKAIAER 208
Score = 29.0 bits (64), Expect = 2.3
Identities = 41/241 (17%), Positives = 70/241 (29%), Gaps = 51/241 (21%)
Query: 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150
H LA I +E KA+E+ P+ + L +
Sbjct: 7 THADSLNNLANIK----------REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ- 55
Query: 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210
Q K+ A+ Y+EA++ YS +G T +++ +
Sbjct: 56 ------QGKLQEAL------MHYKEAIRI----SPTFADAYSN----MGNTLKEMQDVQG 95
Query: 211 A-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 269
A Y + P D + + I AI +SY ALK +
Sbjct: 96 ALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAI------ASYRTALKL----KPD 143
Query: 270 HPLFYSQ--NVLM-LGKTYMRLENYEQA----AYYLEMTKNYPAVQEATKLLEKAKSYLK 322
P Y + L + E ++ A LE + + L + + K
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK 203
Query: 323 K 323
Sbjct: 204 A 204
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 39.0 bits (91), Expect = 0.002
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 26/171 (15%)
Query: 173 YEEALKYFLEA-----EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227
YE+A+ +F +A ++ P + + +G YE A Y + + +
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259
Query: 228 DQ-----CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282
F IT + + KI A + + + Y +A L + + L
Sbjct: 260 LPSLPQAYFLITQIHYKLGKIDKAH------EYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313
Query: 283 KTYMRLENYEQAAYYLEMTKNYPAVQEATKLL----------EKAKSYLKK 323
+ E + +LE Y +++ + +KA +Y K
Sbjct: 314 LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 39.1 bits (91), Expect = 0.002
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 37/177 (20%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
A L LGM + + A +Y +
Sbjct: 431 TTAARLFQGTHLPYLFLGMQHMQ--------------------LGNILLANEYLQSSYAL 470
Query: 187 HPLFYSQNVLM---LGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ L+ LG + + A ++ Q ++ + T W
Sbjct: 471 FQ----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT---WANL- 522
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299
+A Y+ A+ + + + + Y+ + A +L
Sbjct: 523 -GHAYRK---LKMYDAAIDALNQGLLLSTNDANVHTA-IALVYLHKKIPGLAITHLH 574
Score = 38.3 bits (89), Expect = 0.003
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183
++ + L D L LG+ F + + AI + ++ AL +
Sbjct: 462 EYLQSSYALFQYDPLLLNELGVVAFN-------KSDMQTAI------NHFQNALLLVKKT 508
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
+ ++ LG Y +L+ Y+ A L
Sbjct: 509 QSNEK-PWAATWANLGHAYRKLKMYDAAIDALN 540
Score = 35.2 bits (81), Expect = 0.025
Identities = 15/169 (8%), Positives = 39/169 (23%), Gaps = 38/169 (22%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+I S L F + + + L + +
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSR--------------------FIDVLAITTKILEI 334
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAY-YLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245
P + + + + ++ +P + +
Sbjct: 335 DP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP------------EKAVTWLAVGI 381
Query: 246 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
+ EA +YF ++ P F + ++ ++QA
Sbjct: 382 YYLC---VNKISEARRYFSKSSTMDPQFGPAWIGF-AHSFAIEGEHDQA 426
Score = 34.4 bits (79), Expect = 0.042
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 37/177 (20%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+K+ + P + + AI S+Y A + F +
Sbjct: 397 SKSSTMDPQFGPAWIGFAHSFAI-------EGEHDQAI------SAYTTAARLF----QG 439
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYY----LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
L Y L LG +M+L N A Y + + P E+ + + +
Sbjct: 440 THLPY----LFLGMQHMQLGNILLANEYLQSSYALFQYDP-----LLLNELGVVAFNKSD 490
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299
+ AI + ++ AL + + ++ LG Y +L+ Y+ A L
Sbjct: 491 MQTAI------NHFQNALLLVKKTQSNEK-PWAATWANLGHAYRKLKMYDAAIDALN 540
Score = 34.4 bits (79), Expect = 0.043
Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 50/180 (27%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
N ++ P+ + T +G++ + EA +YF ++
Sbjct: 363 NDLVDRHPEKAVTWLAVGIYYLCVNK--------------------ISEARRYFSKSSTM 402
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
P F + ++ ++QA + Y + + +P+
Sbjct: 403 DPQFGPAWIGF-AHSFAIEGEHDQAISAYTTAARLFQGTH-------------LPYLF-- 446
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM---LGKTYMRLENYEQAAYYLE 299
+ + A +Y + + L+ LG + + A + +
Sbjct: 447 LGMQHMQ---LGNILLANEYLQSSYALFQ----YDPLLLNELGVVAFNKSDMQTAINHFQ 499
Score = 33.7 bits (77), Expect = 0.081
Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 11/156 (7%)
Query: 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL----EMTK 219
D L Y+ A + + L + Y +Y +A L +
Sbjct: 91 RHDALMQQQYKCAAFVGEKVLDITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLYNR 148
Query: 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279
+ + C + +Q + + A K ++ +
Sbjct: 149 SSACRYLAAFCLV--KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCY 204
Query: 280 MLGKTYMRLENYEQA-AYYLEMTKNYPAVQEATKLL 314
+ G+ Y L N+++A Y E EA L
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240
Score = 32.1 bits (73), Expect = 0.24
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 14/134 (10%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
++ A + + EA Y + L ++ + E L + NY +D
Sbjct: 216 FDRAKECYKEALMVDAKCY-EAFDQLVSNHLLTADEEWD---LVLKLNYSTYSKED---- 267
Query: 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE 292
+ R + + + +L + S +L T +
Sbjct: 268 ----AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRSRFI 322
Query: 293 QA-AYYLEMTKNYP 305
A ++ + P
Sbjct: 323 DVLAITTKILEIDP 336
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 38.2 bits (89), Expect = 0.003
Identities = 46/298 (15%), Positives = 96/298 (32%), Gaps = 45/298 (15%)
Query: 18 LKKSDDLFEEQQFEEVNKMLES-SEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76
L K +++F +++ + +E + + T +S K +L
Sbjct: 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177
Query: 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136
+ Y A + + + + +KA TKA + E N+ +LK
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA-ARLFEEQLDKNNEDEKLKEKL 236
Query: 137 STTLFMLGMWCF----------------EITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
+ +L G++ F E+ +A + D + E YF
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD---RNDSTEYYNYF 293
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDM 236
+A K S G+ L+NY+QA + E+
Sbjct: 294 DKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-------------F 339
Query: 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
P+ Q A + + +++ F EA+++ P + + ++++A
Sbjct: 340 PYIQL--ACLAYR---ENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKA 391
Score = 35.5 bits (82), Expect = 0.020
Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 51/223 (22%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITD-------------------MPWYQRKIANAIFDT 167
+KA++L ++S+ + G F + + P+ Q A +
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL--ACLAYR- 350
Query: 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPV 223
+ +++ F EA+++ P + + ++++A Y +E+
Sbjct: 351 --ENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD- 406
Query: 224 KQDKDQCFEITDMPWYQRKIA----NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279
+ + ++ EA +A K P Q +
Sbjct: 407 ------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKI 453
Query: 280 MLGKTYMRLENYEQA-AYY---LEMTKNYPAVQEATKLLEKAK 318
L + ++ E+ ++A + ++ + +A E AK
Sbjct: 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAK 496
Score = 33.2 bits (76), Expect = 0.098
Identities = 27/197 (13%), Positives = 46/197 (23%), Gaps = 32/197 (16%)
Query: 127 NKAIELKPDDSTTLFMLGM-----------------WCFEITDMPWYQRKIANAIFDTLP 169
KA+ELKPD S L + +
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
S +E A +Q L + A + + K + D+
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 230 CFEITDMPWYQRKIANAIFDTLPT------------SSYEEALKYFLEAEKQHPLFYSQN 277
E ++N + + +EE L E EK + +
Sbjct: 183 SNEA--DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE-KLAIS 239
Query: 278 VLMLGKTYMRLENYEQA 294
+ G + A
Sbjct: 240 LEHTGIFKFLKNDPLGA 256
Score = 32.4 bits (74), Expect = 0.21
Identities = 28/202 (13%), Positives = 50/202 (24%), Gaps = 45/202 (22%)
Query: 127 NKAIELKPDD------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
N A+ELK D S +G ++ ++
Sbjct: 30 NWALELKEDPVFYSNLSACYVSVGD---------------------------LKKVVEMS 62
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240
+A + P YS+ +L L + A + L + D P +
Sbjct: 63 TKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS------IEPMLE 115
Query: 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300
R + S +E A +Q L + A + +
Sbjct: 116 RNLNKQA-----MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170
Query: 301 TKNYPAVQEATKLLEKAKSYLK 322
K + E K +
Sbjct: 171 FKPELTFANYDESNEADKELMN 192
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 37.6 bits (88), Expect = 0.003
Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 55/232 (23%)
Query: 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150
+ A I + + + +A+ +KPD + G
Sbjct: 40 KNELAWLVRAEIYQYLKVND---------KAQESF-RQALSIKPDSAEINNNYG------ 83
Query: 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENY 208
+ L + E++ YF +A P + L G + +
Sbjct: 84 -----------WFLCGRL--NRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQF 129
Query: 209 EQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264
A AY L +P + + A +A YF
Sbjct: 130 GLAEAYLKRSLAAQPQFPP-------------AFKEL--ARTKML---AGQLGDADYYFK 171
Query: 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTKNYPAVQEATKLLE 315
+ + + + + ++L+ K L N + A Y ++ N+P +E +L
Sbjct: 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 34/201 (16%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
KA L P++ P+ Q A ++ + E+ +F E + +
Sbjct: 334 QKAQSLNPENV---------------YPYIQL--ACLLYKQ---GKFTESEAFFNETKLK 373
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYP-VKQDKDQCFEITDMPWYQR 241
P + + +++ A Y + + + + Q
Sbjct: 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432
Query: 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY--- 297
D + A+K +A + P Q + L + +++E ++A +
Sbjct: 433 SQDPTQLDE---EKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 298 LEMTKNYPAVQEATKLLEKAK 318
+ + +AT E AK
Sbjct: 489 AILARTMDEKLQATTFAEAAK 509
Score = 31.6 bits (72), Expect = 0.32
Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 20/155 (12%)
Query: 173 YEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKD 228
+ + + P Y+ + G + +N+ +A YY + P
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP------ 56
Query: 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 288
+ P + I+ T E+ +++ +A + P +S+ +L L
Sbjct: 57 ------NEPVFYSNISACYIS---TGDLEKVIEFTTKALEIKP-DHSKALLRRASANESL 106
Query: 289 ENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
N+ A + L + A+ ++ K+
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141
Score = 30.5 bits (69), Expect = 0.76
Identities = 17/199 (8%), Positives = 47/199 (23%), Gaps = 25/199 (12%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
KA+E+KPD S L + + + +A+
Sbjct: 83 TKALEIKPDHSKALLRRASANESLGN--------------------FTDAMFDL-SVLSL 121
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246
+ F ++ + + + + + L + + + + + +
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181
Query: 247 IFDTLPTSSYEEALKYFLEAEKQHPLF-YSQNVLMLGKTYMRLENYEQA-AYYLEMTKNY 304
+T Y+ A +A ++ ++ + Y +
Sbjct: 182 SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239
Query: 305 PAVQEATKLLEKAKSYLKK 323
A
Sbjct: 240 ENAALALCYTGIFHFLKNN 258
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 35.0 bits (81), Expect = 0.005
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPAVQEAT 311
E AL+ E + P+ + ++G Y +L ++++A Y +E+ + PA+Q
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
Query: 312 KLLEKAKSYLK 322
+++ Y K
Sbjct: 76 MVMDILNFYNK 86
Score = 30.0 bits (68), Expect = 0.31
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKD 228
E AL+ E + P+ + ++G Y +L ++++A Y +E+ + P Q +
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
Query: 229 QCFEITDMPWYQRKIANAI 247
+I + +Y + + N +
Sbjct: 76 MVMDI--LNFYNKDMYNQL 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 36.5 bits (85), Expect = 0.006
Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
KA+ ++ L G + +E Q++ A EA + L E
Sbjct: 95 RKALASDSRNARVLNNYGGFLYE-------QKRYEEAY------QRLLEASQDTLYPE-- 139
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
S+ LG ++++ QA Y+ L + +N P +
Sbjct: 140 ----RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-------------VALE-- 180
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMT 301
+A+ ++ Y A +Y+ + ++++L+ + E+ + AA Y L++
Sbjct: 181 MADLLYKE---REYVPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLK 236
Query: 302 KNYPAVQEATKLLE 315
+ YP E +
Sbjct: 237 RLYPGSLEYQEFQA 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 36.8 bits (84), Expect = 0.009
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 256 YEEALKYFLEAEKQHPLFYSQN-------VLMLGKTYMRLENYEQAAYYLEM-------- 300
EEAL Y + + +F+ + V+ +GK + + QA L +
Sbjct: 345 LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404
Query: 301 -TKNYPAVQEATKLLEKAKSYLKK 323
+ + +++ LLE+ + ++
Sbjct: 405 HGREHSLIEDLILLLEECDANIRA 428
Score = 29.9 bits (66), Expect = 1.3
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 173 YEEALKYFLEAEKQHPLFYSQN-------VLMLGKTYMRLENYEQAAYYLEMTK 219
EEAL Y + + +F+ + V+ +GK + + QA L +
Sbjct: 345 LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 35.9 bits (83), Expect = 0.011
Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 29/173 (16%)
Query: 173 YEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLE-MTKNYPVKQDKDQ 229
Y+ A++YF + + L + Y + + Y AA E + Y + Q
Sbjct: 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP-----------LFYSQNV 278
M +Y+ D T +A++ F ++P + +
Sbjct: 91 AEYERAMCYYKL-SPPYELDQTDT---RKAIEAFQLFIDRYPNHELVDDATQKIRELRAK 146
Query: 279 L-----MLGKTYMRLENYEQAAYYLE-MTKNYP---AVQEATKLLEKAKSYLK 322
L + Y R E YE AA E + YP +A L+ ++Y+
Sbjct: 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA--LVGAMRAYIA 197
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 36.1 bits (84), Expect = 0.012
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 29/173 (16%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183
++A+ + P+D + +G+ F+ + A + +AL+
Sbjct: 180 RFFSQALSIAPEDPFVMHEVGVVAFQ-------NGEWKTAE------KWFLDALEKIKAI 226
Query: 184 EKQHPL-FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ + + + LG +L+ Y +A Y Q +
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ-----ALVLIPQNAST----YSA-- 275
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295
I ++E A+ YF A + +V MLG +A
Sbjct: 276 IGYIHSL---MGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSEAY 324
Score = 35.7 bits (83), Expect = 0.017
Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 37/170 (21%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
+ ++++ ++ + L + D ++ K +
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCD--------------------FKMCYKLTSVVME 50
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQAAY-YLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244
+ P F++ + + T + L + Y ++ YP P +
Sbjct: 51 KDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP------------SNPVSWFAVG 97
Query: 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
E A +Y +A + + G ++ ++QA
Sbjct: 98 CYYLMV--GHKNEHARRYLSKATTLEKTYGPAWIA-YGHSFAVESEHDQA 144
Score = 33.8 bits (78), Expect = 0.063
Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 43/177 (24%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+K ++L P + + F +G + + E A +Y +A
Sbjct: 80 HKLVDLYPSNPVSWFAVGCYYLMVGHK-------------------NEHARRYLSKATTL 120
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ + G ++ ++QA A Y ++ K + P
Sbjct: 121 EKTYGPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMKGCHL-------------PMLYIG 166
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299
+ + T++ + A ++F +A P + +G + ++ A +
Sbjct: 167 LEYGL-----TNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFL 217
Score = 33.4 bits (77), Expect = 0.082
Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 51/195 (26%)
Query: 117 QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176
+ E + +++KA L+ G + + A+ ++Y A
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-------ESEHDQAM------AAYFTA 151
Query: 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY----LEMTKNYPVKQDKDQCFE 232
+ K L L +G Y N + A + L + P
Sbjct: 152 AQLM----KGCHLPM----LYIGLEYGLTNNSKLAERFFSQALSIAPEDPF--------- 194
Query: 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM--------LGKT 284
++ F ++ A K+FL+A ++ ++ + LG
Sbjct: 195 ----VMHEV--GVVAFQ---NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245
Query: 285 YMRLENYEQAAYYLE 299
+L+ Y +A Y
Sbjct: 246 CRKLKKYAEALDYHR 260
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 35.7 bits (83), Expect = 0.012
Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 43/161 (26%)
Query: 174 EEALKYFLE-AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE---------------- 216
E + + AE +Q L T++ +Y++A Y+ +
Sbjct: 3 TEPGSQYQQQAEAGDR--RAQY--YLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQ 58
Query: 217 MTKNYPVKQDKDQCFEITDMPWYQR----KIANAIFD--------TLPTSSYEEALKYFL 264
+ P + D Q + ++ + + A+
Sbjct: 59 LKIRNPQQADYPQARQ-----LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQ 113
Query: 265 EAEKQ-HPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
+A + ++LG Y E+ +A+ Y +
Sbjct: 114 DAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154
Score = 27.2 bits (61), Expect = 6.3
Identities = 23/190 (12%), Positives = 50/190 (26%), Gaps = 56/190 (29%)
Query: 173 YEEALKYFLEAEKQ-HPLFYSQNVLMLGKTYMR---LENYEQAAYYLEM--TKNYP---- 222
Y++A + +A Q + +L + +R +Y QA E
Sbjct: 34 YQKAEYWAQKAAAQGDG--DALA--LLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEI 89
Query: 223 -----------VKQDKDQCFEITDMPWYQRKIANAIFDTLPTS----------------S 255
D Q ++ D +
Sbjct: 90 VLARVLVNRQAGATDVAHAIT-----LLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR------LENYEQAAYYLEM--TKNYPAV 307
+A +YF + Y++ G + + N ++A ++L + + +
Sbjct: 145 DVKASEYFKGSSSLSRTGYAEY--WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202
Query: 308 QEATKLLEKA 317
E + K
Sbjct: 203 CEEFDRISKG 212
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 36.0 bits (84), Expect = 0.012
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 39/186 (20%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+ +PD++ L +L F+ + + + A KQ
Sbjct: 23 MQLWRQEPDNTGVLLLLSSIHFQCRR--------------------LDRSAHFSTLAIKQ 62
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245
+PL ++ LG Y ++A +Y + P D +A
Sbjct: 63 NPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP------------DFIDGYINLAA 109
Query: 246 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNY 304
A+ E A++ ++ A + +P LG L E+A A YL+ +
Sbjct: 110 ALVA---AGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 305 PAVQEA 310
P A
Sbjct: 166 PNFAVA 171
Score = 34.8 bits (81), Expect = 0.029
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 40/170 (23%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+A+ L P+ + L +E Q I AI +Y A++ +
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYE-------QGLIDLAI------DTYRRAIEL----QPH 269
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEIT-DMPWYQRKIA 244
P Y L + +A Y + + +A
Sbjct: 270 FPDAYCN----LANALKEKGSVAEAEDCY-------------NTALRLCPTHADSLNNLA 312
Query: 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
N + + EEA++ + +A + P ++ L + ++A
Sbjct: 313 NIKRE---QGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEA 358
Score = 33.7 bits (78), Expect = 0.081
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 57/219 (26%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
Q D+ + L+ I + ++L+ H AI+ P + LG
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQC----------RRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204
E +EA++++ A + P + + L +
Sbjct: 75 NVYKERGQ--------------------LQEAIEHYRHALRLKPD-FIDGYINLAAALVA 113
Query: 205 LENYEQA-AYYLEMTKNYPVKQDKDQCFEIT-DMPWYQRKIANAIFDTLPTSSYEEALKY 262
+ E A Y + D+ + + N + EEA
Sbjct: 114 AGDMEGAVQAY-------------VSALQYNPDLYCVRSDLGNLLKA---LGRLEEAKAC 157
Query: 263 FLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQA-AYY 297
+L+A + P F +S LG + A ++
Sbjct: 158 YLKAIETQPNFAVAWSN----LGCVFNAQGEIWLAIHHF 192
Score = 32.5 bits (75), Expect = 0.15
Identities = 15/123 (12%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
+E A ++ ++ +Q P + +L+L + + +++A++ +
Sbjct: 15 FEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFS------------TLAIK 61
Query: 233 IT-DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291
+ + N + +EA++++ A + P + + L + +
Sbjct: 62 QNPLLAEAYSNLGNVYKE---RGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDM 117
Query: 292 EQA 294
E A
Sbjct: 118 EGA 120
Score = 30.6 bits (70), Expect = 0.74
Identities = 40/217 (18%), Positives = 64/217 (29%), Gaps = 53/217 (24%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
A+ Q+ + L + E+ L+ E I+H+ A+ LKPD L
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQ---------EAIEHY-RHALRLKPDFIDGYINLA 108
Query: 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204
+ A+ +Y AL+Y S LG
Sbjct: 109 AALVA-------AGDMEGAV------QAYVSALQY----NPDLYCVRSD----LGNLLKA 147
Query: 205 LENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 263
L E+A A YL+ + P + + A+ +F
Sbjct: 148 LGRLEEAKACYLKAIETQP------------NFAVAWSNLGCVFNA---QGEIWLAIHHF 192
Query: 264 LEAEKQHPLFYS--QNVLMLGKTYMRLENYEQA-AYY 297
+A P F N LG +++A A Y
Sbjct: 193 EKAVTLDPNFLDAYIN---LGNVLKEARIFDRAVAAY 226
Score = 30.2 bits (69), Expect = 0.83
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 48/174 (27%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
KAIE +P+ + LG Q +I AI +E+A+ +
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNA-------QGEIWLAI------HHFEKAVTL----DPN 201
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
Y LG +++A A Y L ++ N+ +
Sbjct: 202 FLDAYIN----LGNVLKEARIFDRAVAAYLRALSLSPNHA-------------VVHGNL- 243
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQA 294
A ++ + A+ + A + P F N L + +A
Sbjct: 244 -ACVYYE---QGLIDLAIDTYRRAIELQPHFPDAYCN---LANALKEKGSVAEA 290
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 35.1 bits (81), Expect = 0.015
Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 47/173 (27%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY----LEMTKNYPVKQDKD 228
++ AL F + H +G Y L+N +A + K+ V
Sbjct: 22 WKGALDAFSAVQDPHSRICFN----IGCMYTILKNMTEAEKAFTRSINRDKHLAV----- 72
Query: 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP----LFYSQNVLM---- 280
++QR + Y+ A+K EA Q + Y L
Sbjct: 73 --------AYFQRGMLYYQT-----EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119
Query: 281 -------LGKTYMRLENYEQAAYYLEM------TKNYPAVQEATKLLEKAKSY 320
+ Y + E +++A L + + + +A + + K K Y
Sbjct: 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172
Score = 28.1 bits (63), Expect = 2.9
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 35/121 (28%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
++I + F GM ++ Y+ A+K EA Q
Sbjct: 61 TRSINRDKHLAVAYFQRGMLYYQTEK--------------------YDLAIKDLKEALIQ 100
Query: 187 HP----LFYSQNVLM-----------LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231
+ Y L + Y + E +++A L + + + +
Sbjct: 101 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
Query: 232 E 232
+
Sbjct: 161 K 161
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 34.4 bits (79), Expect = 0.016
Identities = 28/219 (12%), Positives = 49/219 (22%), Gaps = 77/219 (35%)
Query: 104 NEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163
++ I T+K + D ++ +
Sbjct: 7 ENESISTAVIDAINSGATLK----DINAIPDDMMDDIYSYAYDFYNKGR----------- 51
Query: 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223
EEA +F ++ L Y E ++QAA
Sbjct: 52 ---------IEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADL--------- 92
Query: 224 KQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283
Y A K G+
Sbjct: 93 --------------------------------YAVAFAL----GKNDYTPV----FHTGQ 112
Query: 284 TYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLK 322
+RL+ +A E+ + ++ L KA+SYL
Sbjct: 113 CQLRLKAPLKAKECFELVIQHSNDEK---LKIKAQSYLD 148
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 35.7 bits (83), Expect = 0.017
Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 31/189 (16%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
+ + + + + L+ LG + + F + A++++ E K
Sbjct: 155 LARQLGDRLSEGRALYNLGNVYHAKGK---HLGQRNPGKFGDDVKEALTRAVEFYQENLK 211
Query: 186 QHPLFYSQ----NVLM-LGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITD- 235
+ LG TY L +++ A ++ L + + + D+ E
Sbjct: 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-----GDRAAERRAN 266
Query: 236 ----MPWY-QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290
+ +A Y+ L +E ++ S LG TY L
Sbjct: 267 SNLGNSHIFLGQFEDAA------EHYKRTLALAVELGEREVEAQSCY--SLGNTYTLLHE 318
Query: 291 YEQAAYYLE 299
+ A Y
Sbjct: 319 FNTAIEYHN 327
Score = 33.8 bits (78), Expect = 0.063
Identities = 23/170 (13%), Positives = 40/170 (23%), Gaps = 49/170 (28%)
Query: 173 YEEALKYFLEA----EKQHPLF---YSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNY 221
+ +F A + YSQ LG Y L +Y +A Y+ L + K
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQ----LGNAYFYLGDYNKAMQYHKHDLTLAK-- 117
Query: 222 PVKQDKDQCFEITDMP-------------WYQRKIANAIFDTLPTSSYEEALKYFLEAEK 268
+ D + A E L +
Sbjct: 118 ----------SMNDRLGEAKSSGNLGNTLKVMGRFDEAA------ICCERHLTLARQLGD 161
Query: 269 QHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPAVQEATKLLEKA 317
+ + LG Y + A+ A + ++
Sbjct: 162 RLSEGRALY--NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209
Score = 31.9 bits (73), Expect = 0.26
Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 30/143 (20%)
Query: 173 YEEALKYFLEA---------EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTK 219
++ A+++ E S LG +++ L +E A +Y L +
Sbjct: 239 FQAAIEHHQERLRIAREFGDRAAERRANSN----LGNSHIFLGQFEDAAEHYKRTLALAV 294
Query: 220 NYPVKQDKDQ---CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276
+ + + + C+ + + + AI + L E + +
Sbjct: 295 E--LGEREVEAQSCYSLGNTYTLLHEFNTAI------EYHNRHLAIAQELGDRIGEARAC 346
Query: 277 NVLMLGKTYMRLENYEQAAYYLE 299
LG + + +E+A Y E
Sbjct: 347 W--SLGNAHSAIGGHERALKYAE 367
Score = 31.9 bits (73), Expect = 0.28
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 19/115 (16%)
Query: 192 SQNVLMLGKTYMRLENYEQAAYY----LEMTKNYPVKQDKDQCFEITDMPWYQRKIAN-- 245
S + + + L + + C E+ +
Sbjct: 8 SLSASAENVSSLGLGSGGGGTNSHDGNSQQGSG--SDGGSSMCLELALEGERLCNAGDCR 65
Query: 246 -AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299
+ + ++ A++ E + YSQ LG Y L +Y +A Y +
Sbjct: 66 AGV------AFFQAAIQAGTEDLRTLSAIYSQ----LGNAYFYLGDYNKAMQYHK 110
Score = 31.5 bits (72), Expect = 0.33
Identities = 22/199 (11%), Positives = 52/199 (26%), Gaps = 51/199 (25%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
+ K++ + ++ + LG + A E L +
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTL-------KVMGRFDEAA------ICCERHLTLARQLGD 161
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR--KI 243
+ + LG Y + + + + + +YQ K+
Sbjct: 162 RLSEGRALY--NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA-------VEFYQENLKL 212
Query: 244 ANAIFDTLPTSS--------------YEEALKYFLEA---------EKQHPLFYSQNVLM 280
+ D ++ A+++ E S
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN---- 268
Query: 281 LGKTYMRLENYEQAAYYLE 299
LG +++ L +E AA + +
Sbjct: 269 LGNSHIFLGQFEDAAEHYK 287
Score = 30.7 bits (70), Expect = 0.57
Identities = 13/147 (8%), Positives = 31/147 (21%), Gaps = 40/147 (27%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM-----LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227
+Q + + G+ + + +
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ----------- 72
Query: 228 DQCFEI--TDMP-------------WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272
+ D+ +Y A+ ++ L +
Sbjct: 73 -AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM------QYHKHDLTLAKSMNDRLGE 125
Query: 273 FYSQNVLMLGKTYMRLENYEQAAYYLE 299
S LG T + +++AA E
Sbjct: 126 AKSSG--NLGNTLKVMGRFDEAAICCE 150
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 35.6 bits (82), Expect = 0.020
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCF 231
L A + P + LML + + + +P +
Sbjct: 5 GPRELLQLRAAVRHRPQDF-VAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVA 61
Query: 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291
+ + W Q++ A A ++A +A +HP LG
Sbjct: 62 RLGRVRWTQQRHAEAA------VLLQQA----SDAAPEHPGIALW----LGHALEDAGQA 107
Query: 292 EQAAYYLE 299
E AA
Sbjct: 108 EAAAAAYT 115
Score = 32.5 bits (74), Expect = 0.17
Identities = 19/174 (10%), Positives = 33/174 (18%), Gaps = 35/174 (20%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
L H H L + Q+ + +A + P+ LG
Sbjct: 49 GLALHPGHPEAVARLGRVRWT----------QQRHAEAAVLLQQASDAAPEHPGIALWLG 98
Query: 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204
+ E A + A + P L R
Sbjct: 99 HALEDAGQ--------------------AEAAAAAYTRAHQLLP-EEPYITAQLLNWRRR 137
Query: 205 LENYEQAAYYLEMTKNYPVKQDKD----QCFEITDMPWYQRKIANAIFDTLPTS 254
L ++ + + Q A + S
Sbjct: 138 LCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAAS 191
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.020
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 58/206 (28%)
Query: 2 SSDEAAKTVSKVSEEFLKKSDDLFEEQ---QFEEV-NKMLES--SEYKEDVEIIWRLVRV 55
++D+ T +++ +FL L E QF++V N L + Y E +I
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------- 101
Query: 56 KYNLATHS---SSLSDAD----KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT 108
H+ L + D K + ++ Y + D + + A
Sbjct: 102 ------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 109 L------EGTKAR----IQQL-ETIKHHMNKAIE-----LK-----PDDSTTLFMLGMWC 147
L +G ++ L +T + I+ L D+ +F G
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--- 212
Query: 148 FEITDMPWYQRKIANAIFDTLPTSSY 173
I + W + N P Y
Sbjct: 213 LNI--LEW----LENP--SNTPDKDY 230
Score = 30.4 bits (68), Expect = 1.0
Identities = 39/220 (17%), Positives = 61/220 (27%), Gaps = 56/220 (25%)
Query: 60 ATHSSSLSDADKKQLILSAYFLVYNA---LPQHEDHYAIHKWLAVILN--EKATLEGTKA 114
T + D L FL Y + P + + L + L E LEG
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD--QVLNLCLTEFENCYLEGND- 100
Query: 115 RIQQLETIKHHMNKAIELKPDDSTTLFMLGMW--CFEITDMPWYQRKIANAIFDTLPTSS 172
I H + A +L ++ TTL + A +
Sbjct: 101 -I-------HAL--AAKLLQENDTTLVKTKELIKNY-------IT---ARIMAKRPFDKK 140
Query: 173 YEEALKYFLEAEKQHPLFYSQ-----NV------L-MLGKTYMRL--ENYEQAAYYLEMT 218
AL F + + + N L L +TY L + + +A L
Sbjct: 141 SNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 219 KNYPVKQDK--DQCFEITDMPWYQRKIANAIFDTLPTSSY 256
+ +K Q I + W + N P Y
Sbjct: 199 IRTTLDAEKVFTQGLNI--LEW----LENP--SNTPDKDY 230
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 33.1 bits (76), Expect = 0.027
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 28/104 (26%)
Query: 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172
+A ++LE + D+ F LG E
Sbjct: 2 QAITERLE-------AMLAQGTDNMLLRFTLGKTYAEHEQ-------------------- 34
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
++ AL + A P YS LGKT + A E
Sbjct: 35 FDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWE 77
Score = 27.3 bits (61), Expect = 3.3
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299
++ AL + A P YS LGKT + A E
Sbjct: 35 FDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWE 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 34.1 bits (78), Expect = 0.029
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 17/171 (9%)
Query: 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
++ + + + E L+ + + +P S+ +LG+ Y+ +Y +
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYR 68
Query: 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276
++ + +A ++ + +A
Sbjct: 69 QA----LQLRGENA-------ELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEIT 116
Query: 277 NVLMLGKTYMRLENYEQA-AYYLEMTKNYPAVQEATKLLE---KAKSYLKK 323
+++L NY QA + ++ T+L+E AK ++
Sbjct: 117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRR 167
Score = 27.5 bits (61), Expect = 4.8
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149
+ AT+ +A + ++KA+ L ++ T L +L F
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 34.5 bits (80), Expect = 0.032
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 18/184 (9%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA-- 183
+++ + K ++ L+ LG F ++ + A+ + E
Sbjct: 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171
Query: 184 --EKQHPLFYSQNVLM-LGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFE-ITD 235
LG T+ L N+ A + L + K + K + + + + +
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Query: 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295
+ + A Y++ L + + + S LG TY L++YE+A
Sbjct: 232 AYIFLGEFETAS------EYYKKTLLLARQLKDRAVEAQSCY--SLGNTYTLLQDYEKAI 283
Query: 296 YYLE 299
Y
Sbjct: 284 DYHL 287
Score = 31.4 bits (72), Expect = 0.31
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDK- 227
+E+ L E + + + L G Y+ L +E A YY L + + + +
Sbjct: 206 HEQRLLIAKEFGDKAAERRAYSNL--GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287
C+ + + + AI + + L E + + + LG Y
Sbjct: 264 QSCYSLGNTYTLLQDYEKAI------DYHLKHLAIAQELKDRIGEGRACW--SLGNAYTA 315
Query: 288 LENYEQAAYYLE 299
L N++QA ++ E
Sbjct: 316 LGNHDQAMHFAE 327
Score = 30.3 bits (69), Expect = 0.90
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 22/149 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM-----LGKTYMRLENYEQA-AYY---LEMTKNYPV 223
Y +AL+Y Q LG T L N+++A L++++
Sbjct: 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118
Query: 224 KQDKDQCF--------EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA----EKQHP 271
K + + F ++ + A+ + E
Sbjct: 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178
Query: 272 LFYSQNVLM-LGKTYMRLENYEQAAYYLE 299
LG T+ L N+ A E
Sbjct: 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Score = 29.9 bits (68), Expect = 0.93
Identities = 22/166 (13%), Positives = 43/166 (25%), Gaps = 33/166 (19%)
Query: 173 YEEALKYF---LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+ +F ++ + S LG Y L +Y +A Y
Sbjct: 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH------------H 68
Query: 230 CFEITDMPWYQRKIANA------IFDTLPTSSYEEALKYFLEA------EKQHPLFYSQN 277
+ Q A A L +++EA+ ++
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVL--GNFDEAIVCCQRHLDISRELNDKVG-EARA 125
Query: 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
+ LG Y + + V+ A L+ A ++
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA---LQAAVDLYEE 168
Score = 26.8 bits (60), Expect = 9.6
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
+ + ++ + ++ + + LG + AI + + L E +
Sbjct: 252 LARQLKDRAVEAQSCYSLGNTYTL-------LQDYEKAI------DYHLKHLAIAQELKD 298
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
+ + LG Y L N++QA ++ E
Sbjct: 299 RIGEGRACW--SLGNAYTALGNHDQAMHFAE 327
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane
protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Length = 225
Score = 34.2 bits (79), Expect = 0.032
Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 43/188 (22%)
Query: 166 DTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEM-TKNYP 222
L ++ +A+ + ++P + Q L L Y + + A ++ + P
Sbjct: 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 72
Query: 223 VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE-------------EALKYFLEAEKQ 269
+ D Y R + N D + A F + +
Sbjct: 73 --THPN-----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125
Query: 270 HP-----------LFYSQNVL-----MLGKTYMRLENYEQAA-YYLEMTKNYP---AVQE 309
+P L + ++ L + + Y + M ++YP A ++
Sbjct: 126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185
Query: 310 ATKLLEKA 317
A L+E A
Sbjct: 186 ALPLMENA 193
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 34.6 bits (79), Expect = 0.036
Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 17/154 (11%)
Query: 173 YEEALKYFLEA----EKQHPLFYSQNVLM-LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227
A FL+A +K + N + K + N A LE + +
Sbjct: 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112
Query: 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA-----EKQHPLFYSQNVLMLG 282
++ ++ + + L Y +A+ + A + Q ++ +
Sbjct: 113 -----FRRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 283 KTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316
Y +A+ ++ K
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 34.2 bits (79), Expect = 0.056
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 18/184 (9%)
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
+++ + K ++ L+ LG F + + A+ ++ E
Sbjct: 116 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175
Query: 186 QHPLFYSQ----NVLM-LGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFE-ITD 235
+ LG T+ L N+ A + L + K + K + + + + +
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235
Query: 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295
+ + A Y++ L + + + S LG TY L++YE+A
Sbjct: 236 AYIFLGEFETAS------EYYKKTLLLARQLKDRAVEAQSCY--SLGNTYTLLQDYEKAI 287
Query: 296 YYLE 299
Y
Sbjct: 288 DYHL 291
Score = 31.1 bits (71), Expect = 0.41
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 26/158 (16%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM-----LGKTYMRLENYEQA-AYY---LEMTKNYPV 223
Y +AL+Y Q LG T L N+++A L++++
Sbjct: 63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122
Query: 224 KQDKDQCF--------EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 275
K + + F + + A+ ++ E
Sbjct: 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182
Query: 276 Q----NVLM-LGKTYMRLENYEQA-AYY---LEMTKNY 304
+ LG T+ L N+ A + L + K +
Sbjct: 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Score = 30.7 bits (70), Expect = 0.60
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 42/149 (28%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKD 228
Y++ L + + + S LG TY L++YE+A Y+ L + +
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCY--SLGNTYTLLQDYEKAIDYHLKHLAIAQ--------- 298
Query: 229 QCFEITDMP------------WY-QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 275
E+ D + A+ E+ L+ E + +
Sbjct: 299 ---ELNDRIGEGRACWSLGNAYTALGNHDQAM------HFAEKHLEISREVGDKSGELTA 349
Query: 276 QNVL-----MLGKTYMRLENYEQAAYYLE 299
+ L +LG +Y + ++
Sbjct: 350 RLNLSDLQMVLGLSYSTNNSIMSENTEID 378
Score = 30.0 bits (68), Expect = 0.96
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDK- 227
+E+ L E + + + L G Y+ L +E A YY L + + + +
Sbjct: 210 HEQRLLIAKEFGDKAAERRAYSNL--GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Query: 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287
C+ + + + AI + + L E + + LG Y
Sbjct: 268 QSCYSLGNTYTLLQDYEKAI------DYHLKHLAIAQELNDRIGEGRACW--SLGNAYTA 319
Query: 288 LENYEQAAYYLE 299
L N++QA ++ E
Sbjct: 320 LGNHDQAMHFAE 331
Score = 30.0 bits (68), Expect = 1.0
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 27/163 (16%)
Query: 173 YEEALKYFLEA----EKQHPLF---YSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNY 221
+ +F A + YSQ LG Y L +Y +A Y+ L + +
Sbjct: 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQ----LGNAYFYLHDYAKALEYHHHDLTLARTI 80
Query: 222 PVKQDKDQCF-EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280
+ + + + + AI + L E + +
Sbjct: 81 GDQLGEAKASGNLGNTLKVLGNFDEAI------VCCQRHLDISRELNDKVGEARALY--N 132
Query: 281 LGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
LG Y ++ + V++A L+ A + ++
Sbjct: 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---LQAAVDFYEE 172
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 33.2 bits (76), Expect = 0.061
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 20/90 (22%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
K ++L+ D+ LG + + + ++ L+ +
Sbjct: 112 EKILQLEADNLAANIFLGNYYYLTAEQ-------------------EKKKLETDYKKLSS 152
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
G + + YE+A L+
Sbjct: 153 PT-KMQYARYRDGLSKLFTTRYEKARNSLQ 181
Score = 30.5 bits (69), Expect = 0.47
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 34/191 (17%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+ I L D + + + ++A A +Y++A ++ E ++
Sbjct: 28 RQTIALNIDRTEMYYWTNVDK-NSEISSKLATELALAYKKN---RNYDKAYLFYKELLQK 83
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-----------------------AYYLEMTKNYPV 223
P + + + + A YYL +
Sbjct: 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 224 KQDKDQCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282
+ + T M + + + + T + YE+A + + P +Q L
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFT---TRYEKARNSLQKVILRFPSTEAQK--TLD 197
Query: 283 KTYMRLENYEQ 293
K + +
Sbjct: 198 KILRIEKEVNR 208
Score = 30.1 bits (68), Expect = 0.69
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 43/190 (22%)
Query: 173 YEEALKYFLEAEKQHP----LFYSQNVLM-----------LGKTYMRLENYEQAAYY--- 214
+A+ YF + + ++Y NV L Y + NY++A +
Sbjct: 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79
Query: 215 -LEMTKNYP------------VKQDKD--QCFEIT-----DMPWYQRKIANAIFDTLPTS 254
L+ N Q+KD + +E D + N + T
Sbjct: 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--E 137
Query: 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPAVQEATKL 313
++ L+ + G + + YE+A ++ +P+ EA K
Sbjct: 138 QEKKKLETDYKKLSSPT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKT 195
Query: 314 LEKAKSYLKK 323
L+K K+
Sbjct: 196 LDKILRIEKE 205
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 33.8 bits (78), Expect = 0.063
Identities = 25/173 (14%), Positives = 42/173 (24%), Gaps = 31/173 (17%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY---FLEA 183
+ P+ LG+ E K AI + A +
Sbjct: 45 EAVCQAAPEREEAWRSLGLTQAE-------NEKDGLAI------IALNHARMLDPKDIAV 91
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ L ++ N A A + P + D+
Sbjct: 92 ------HAA-----LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-QNVLMLGKTYMRLENYEQA 294
+ + F + Y E A + +P LG Y NY+ A
Sbjct: 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS--LGVLYNLSNNYDSA 191
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 32.4 bits (74), Expect = 0.073
Identities = 25/197 (12%), Positives = 43/197 (21%), Gaps = 71/197 (36%)
Query: 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 187
L D L+ LG ++ +++A K F
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGK--------------------WDDAQKIFQALCMLD 48
Query: 188 PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247
+ L LG L YEQA
Sbjct: 49 HYDA-RYFLGLGACRQSLGLYEQALQS--------------------------------- 74
Query: 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PA 306
Y + P F + +++L + + A + A
Sbjct: 75 --------YSYG----ALMDINEPRFP----FHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 307 VQEATKLLEKAKSYLKK 323
L +A + L+
Sbjct: 119 QPAHEALAARAGAMLEA 135
Score = 29.7 bits (67), Expect = 0.67
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 21/91 (23%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
L D+ LG + YE+AL+ +
Sbjct: 42 QALCMLDHYDARYFLGLGACRQSLGL--------------------YEQALQSYSYGALM 81
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+ + +++L + + A
Sbjct: 82 DINEP-RFPFHAAECHLQLGDLDGAESGFYS 111
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 33.5 bits (77), Expect = 0.081
Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 29/173 (16%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
A++ P LG E + AI S+ LE +
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAE-------NEQELLAI------SALRRC----LELKPD 130
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ L ++ QA L T Y + ++
Sbjct: 131 NQTALMA----LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM-LGKTYMRLENYEQA 294
I ++ S + E + FL A + P +V LG + Y++A
Sbjct: 187 ILGSLLS---DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236
Score = 27.3 bits (61), Expect = 7.7
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 40/157 (25%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
A+ Q H ++L E +Q + + +ELKPD+ T L L
Sbjct: 90 AVQQDPKHMEAWQYLGTTQAEN----------EQELLAISALRRCLELKPDNQTALMALA 139
Query: 145 ----------------------------MWCFEITDMPWYQRKIANAIFDTLPTSS-YEE 175
+ + I +L + S + E
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 199
Query: 176 ALKYFLEAEKQHPLFYSQNVLM-LGKTYMRLENYEQA 211
+ FL A + P +V LG + Y++A
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 33.4 bits (76), Expect = 0.086
Identities = 40/334 (11%), Positives = 96/334 (28%), Gaps = 57/334 (17%)
Query: 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATH-------SS 64
S + + + +++ + ++ +E+ + + + ++ + +
Sbjct: 9 HHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETH 68
Query: 65 SLSDADKKQLIL-----SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQL 119
S+ DA +KQ + + L + LN
Sbjct: 69 SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---------DYS 119
Query: 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179
+ ++KA++L+P+ LG + W + + +A + + AL +
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGE-VY------WKKGDVTSAH------TCFSGALTH 166
Query: 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY----LEMTKNYPVKQDKDQCFEITD 235
L L + + ++M
Sbjct: 167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS----------- 215
Query: 236 MPWYQRKIANAIFDTLPTSS---YEEALKYFLEAEKQHPLFYSQNVLM--LGKTYMRLEN 290
WY A + ++AL + +AEK S L + E+
Sbjct: 216 --WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273
Query: 291 YEQA-AYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
Y +A + + PA E + ++ +L +
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 32.9 bits (76), Expect = 0.093
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 41/178 (23%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
NKA EL D T L +E + YE A+ +A +Q
Sbjct: 29 NKAWELHK-DITYLNNRAAAEYEKGE--------------------YETAISTLNDAVEQ 67
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245
+ ++ K++ R+ N + + Y + ++
Sbjct: 68 GR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-----------KSLTEHRTADIL 115
Query: 246 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTK 302
+ E+ LK +P ++ + GK Y ++ A Y EM K
Sbjct: 116 TK-----LRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167
Score = 32.5 bits (75), Expect = 0.15
Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 50/221 (22%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN-----AIFDTLPT----------- 170
N A+E + ++ I + K+ + + T
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGN---AYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118
Query: 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTK---NYPVKQD 226
+ E+ LK +P ++ + GK Y ++ A Y EM K
Sbjct: 119 RNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--- 174
Query: 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEAEKQHPLFYSQNVLMLGK 283
+ R A A+ + S+ EA+ +E + Y +
Sbjct: 175 ----------GYSNR--AAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIR----KAT 215
Query: 284 TYMRLENYEQA-AYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
+ ++ Y A V + E + Y K
Sbjct: 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256
Score = 27.1 bits (61), Expect = 8.4
Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 33/143 (23%)
Query: 78 AYFLVYNALPQHEDHY-AIHKW-LAVILNEKATLE----GTKARIQQLETIKHHMNKAIE 131
Y ++ + + + Y + + +K+ E +++ E
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133
Query: 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF- 190
+ P+ + + G F +D + A+K + E K+ P
Sbjct: 134 VNPEKAEEARLEGKEYFTKSD--------------------WPNAVKAYTEMIKRAPEDA 173
Query: 191 --YSQNVLMLGKTYMRLENYEQA 211
YS +L ++ +A
Sbjct: 174 RGYSN----RAAALAKLMSFPEA 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 32.6 bits (73), Expect = 0.17
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 260
T +++ Y E+ K +K + + R ++ A +YEEA
Sbjct: 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEAS 371
Query: 261 KYFLEAEKQHPLFYSQN-------VLMLGKTYMRLENYEQAAYYLEMT---------KNY 304
Y + Y N V+ G T + E + ++
Sbjct: 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431
Query: 305 PAVQEATKLLEKAKSYLK 322
P ++ + + + L+
Sbjct: 432 PITKDLEAMRMQTEMELR 449
Score = 27.6 bits (60), Expect = 7.3
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 155 WYQRKIANAIFDTLP-TSSYEEALKYFLEAEKQHPLFYSQN-------VLMLGKTYMRLE 206
Y ++ + + L +YEEA Y + Y N V+ G T
Sbjct: 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG 407
Query: 207 NYEQAAYYLE 216
+ E +
Sbjct: 408 HIEVGHGMIC 417
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 32.2 bits (74), Expect = 0.18
Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 54/208 (25%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY---FLEA 183
NK K + + +E+ Y+ A K +
Sbjct: 27 NKLEAKKYNSPYIYNRRAVCYYELAK--------------------YDLAQKDIETYFSK 66
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWY 239
S + GK M+ A Y ++ +
Sbjct: 67 VNATK-AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL-------------DMYG 112
Query: 240 QRKIANAIFDTLPTSSYEEALKYF---LEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-A 295
Q + ++ ++ A++Y + P + + LG+ Y + Y +A +
Sbjct: 113 QI--GSYFYN---KGNFPLAIQYMEKQIRPTTTDPKVFYE----LGQAYYYNKEYVKADS 163
Query: 296 YYLEMTKNYPAVQEATKLLEKAKSYLKK 323
++++ + P + +A +
Sbjct: 164 SFVKVLELKPNIYIGYLWRARANAAQDP 191
Score = 27.6 bits (62), Expect = 5.1
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 28/116 (24%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEI-------------------TDMPWYQRKIANAIFDT 167
K I D + LG + + + R A A
Sbjct: 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR--ARANAAQ 189
Query: 168 LPTSSYEEALKYF---LEAEKQHPLFYSQNVLM----LGKTYMRLENYEQAAYYLE 216
P + A Y+ +E Y ++ + Y + +A +
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 31.9 bits (73), Expect = 0.19
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 173 YEEALKYFLEA-----EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPV 223
++EA F + + + +G N++ A + E+ + P
Sbjct: 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101
Query: 224 KQDKDQ--CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 281
+E+ + + +A A YE++L Y +A+ Q + + L
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGAR------QEYEKSLVYAQQADDQVAIACAFR--GL 153
Query: 282 GKTYMRLENYEQAAYYLE 299
G + +N +A +
Sbjct: 154 GDLAQQEKNLLEAQQHWL 171
Score = 29.9 bits (68), Expect = 0.72
Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 32/141 (22%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
+ ++ MLG Y ++ +++A + +
Sbjct: 9 ALAERQAQALLAHPATASGARF--MLGYVYAFMDRFDEARASFQ------------ALQQ 54
Query: 233 ITDMPWYQRKIANA------IFDTLPTSSYEEALKYFLEA--------EKQHPLFYSQNV 278
A + +++ A + FLE E +
Sbjct: 55 QAQKSGDHTAEHRALHQVGMVERMA--GNWDAARRCFLEERELLASLPEDPLAASANAY- 111
Query: 279 LMLGKTYMRLENYEQAAYYLE 299
+ + + A E
Sbjct: 112 -EVATVALHFGDLAGARQEYE 131
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 32.2 bits (72), Expect = 0.21
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD-TLPTSSY 256
+ + + R ++Y+ + LE+ + + D Y + L +
Sbjct: 301 VIEEFRRAKHYKSPSELLEICELSQ----EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW 356
Query: 257 EEALKYFLEAEKQHPLFYSQN-------VLMLGKTYMRLENYEQAAYYLEMT-------- 301
E ALKY + K + Y L LG+ YM LEN L+
Sbjct: 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416
Query: 302 -KNYPAVQEATKLLE 315
K++P + E + +E
Sbjct: 417 GKDHPYISEIKQEIE 431
Score = 27.9 bits (61), Expect = 4.9
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 103 LNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST---TLFMLGMWCFEITDMPWYQRK 159
L+ E + ++ + +A K D Y
Sbjct: 282 LSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
Query: 160 IANAIFD-TLPTSSYEEALKYFLEAEKQHPLFYSQN-------VLMLGKTYMRLENYEQA 211
+ L +E ALKY + K + Y L LG+ YM LEN
Sbjct: 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAG 401
Query: 212 AYYLE 216
L+
Sbjct: 402 EKALK 406
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 32.0 bits (73), Expect = 0.23
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 47/164 (28%)
Query: 173 YEEALKYFLE-AEKQHPLFYSQNVL----MLGKTYMRLENYEQAAYYLE----------- 216
E LK + +Q V +LG + + + A LE
Sbjct: 195 QAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWV 252
Query: 217 ----MTKNYPVKQDKDQCFEITDMPWYQR----KIANAIFD--------TLPTSSYEEAL 260
+ ++P D +Q + + A + + A
Sbjct: 253 SLAQLLYDFPELGDVEQMMK-----YLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAE 307
Query: 261 KYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
+F +A + + LG+ Y R ++A +L
Sbjct: 308 AHFEKAVGREV--AADY--YLGQIYRRGYLGKVYPQKALDHLLT 347
Score = 29.3 bits (66), Expect = 1.6
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 27/137 (19%)
Query: 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR---LENYEQAAYYLEM--TKNYPVKQD 226
+ + ++ +A + L Y + E + +E ++ Q
Sbjct: 159 QHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ- 214
Query: 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286
+ TL T + A + +P S L +
Sbjct: 215 ----RVDSVARVLGD-------ATLGTPDEKTAQALLEKIAPGYPA--SWV--SLAQLLY 259
Query: 287 RLE---NYEQAAYYLEM 300
+ EQ YL+
Sbjct: 260 DFPELGDVEQMMKYLDN 276
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 31.9 bits (73), Expect = 0.29
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 52/168 (30%)
Query: 172 SYEEALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM--TKNYP-- 222
+A+ +F AE+ + ++ +LG YM ++Y QA + + K P
Sbjct: 58 DLTQAMDWFRRAAEQGYT--PAEY--VLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113
Query: 223 -------------VKQDKDQCFEITDMPWY-----------QRKIANAIFDTLPTS-SYE 257
VK DK + + W+ Q+ + +A F+ + Y
Sbjct: 114 QQNLGVMYHEGNGVKVDKAESVK-----WFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168
Query: 258 EALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
A +++ + AE+ + +S N LG Y R N +A +
Sbjct: 169 MAREWYSKAAEQGNV--WSCN--QLGYMYSRGLGVERNDAISAQWYRK 212
Score = 28.8 bits (65), Expect = 3.1
Identities = 21/168 (12%), Positives = 47/168 (27%), Gaps = 52/168 (30%)
Query: 172 SYEEALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM--TKNYP-- 222
E++K+F AE+ Q +G Y +Y A + +
Sbjct: 130 DKAESVKWFRLAAEQGRD--SGQQ--SMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS 185
Query: 223 -------------VKQDKDQCFEITDMPWYQR----KIANAIFD--------TLPTSSYE 257
V+++ + WY++ T Y
Sbjct: 186 CNQLGYMYSRGLGVERNDAISAQ-----WYRKSATSGDELGQLHLADMYYFGIGVTQDYT 240
Query: 258 EALKYFLEAEKQ-HPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
++ F ++ +Q + + +Q LG + + +A +
Sbjct: 241 QSRVLFSQSAEQGNSI--AQF--RLGYILEQGLAGAKEPLKALEWYRK 284
Score = 28.0 bits (63), Expect = 5.2
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 52/168 (30%)
Query: 172 SYEEALKYFLEAEKQ-HPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM--TKNYP-- 222
Y ++ F ++ +Q + + +Q LG + + +A + +
Sbjct: 238 DYTQSRVLFSQSAEQGNSI--AQF--RLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDG 293
Query: 223 --------------VKQDKDQCFEITDMPWY-----------QRKIANAIFDTLPTSSYE 257
V ++++Q WY Q + F ++
Sbjct: 294 QYYLAHLYDKGAEGVAKNREQAIS-----WYTKSAEQGDATAQANLGAIYFRLGSEEEHK 348
Query: 258 EALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
+A+++F + A K +Q LG ++ ++ +QAA ++
Sbjct: 349 KAVEWFRKAAAKGEK--AAQF--NLGNALLQGKGVKKDEQQAAIWMRK 392
Score = 28.0 bits (63), Expect = 5.4
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 47/147 (31%)
Query: 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL-EMTKNYPVKQDKDQC 230
+ E+A+ ++ ++ +Q A L + +++ +
Sbjct: 311 NREQAISWYTKSAEQ--------------------GDATAQANLGAIYFRLGSEEEHKKA 350
Query: 231 FEITDMPWYQR----KIANAIFD--------TLPTSSYEEALKYFLEA-EKQHPLFYSQN 277
E W+++ A F+ ++A + +A E+ +Q
Sbjct: 351 VE-----WFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLS--AAQV 403
Query: 278 VLMLGKTYMR----LENYEQAAYYLEM 300
LG+ Y +Y QA + +
Sbjct: 404 --QLGEIYYYGLGVERDYVQAWAWFDT 428
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 30.7 bits (69), Expect = 0.33
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 21/90 (23%)
Query: 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 187
E+ D L+ L ++ + YE+A F
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQ--------------------SGXYEDAHXVFQALCVLD 51
Query: 188 PLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+ S+ L LG + Y+ A +
Sbjct: 52 H-YDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Score = 26.8 bits (59), Expect = 6.6
Identities = 10/91 (10%), Positives = 20/91 (21%), Gaps = 21/91 (23%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
L DS LG C + Y+ A+ +
Sbjct: 45 QALCVLDHYDSRFFLGLG-ACRQAMGQ-------------------YDLAIHSYSYGAVM 84
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+ + ++ +A L +
Sbjct: 85 DI-XEPRFPFHAAECLLQXGELAEAESGLFL 114
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 30.0 bits (68), Expect = 0.49
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 257 EEALKYFLEAEKQHPLFYSQNVL-MLGKTYMRLENYEQAA-YYLEMTKNYPA-------- 306
+ FLE Y+ N L LG++Y N++ A + ++ YP
Sbjct: 22 SQLFLSFLELYPNGV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79
Query: 307 -----VQEATKLLEKAKSYLKK 323
Q +A+ L++
Sbjct: 80 LKLGLSQYGEGKNTEAQQTLQQ 101
Score = 29.7 bits (67), Expect = 0.50
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 174 EEALKYFLEAEKQHPLFYSQNVL-MLGKTYMRLENYEQAA-YYLEMTKNYP 222
+ FLE Y+ N L LG++Y N++ A + ++ YP
Sbjct: 22 SQLFLSFLELYPNGV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70
Score = 29.3 bits (66), Expect = 0.76
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 173 YEEALKYFLEAEKQHP--LFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYP 222
++ A F + ++P + +L LG + +A ++ YP
Sbjct: 55 FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 29.4 bits (67), Expect = 0.80
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 27/140 (19%)
Query: 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230
++E+ L E + + + LG Y+ L +E A+ Y + +
Sbjct: 30 IAHEQRLLIAKEFGDKAAERIAYS--NLGNAYIFLGEFETASEYYK------------KT 75
Query: 231 FEITDMPWYQRKIANA------IFDTLPTSSYEEALKYFLEAEKQHPLFYSQ----NVLM 280
+ + A + + L YE+A+ Y L+ +
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRIGEGRACW 133
Query: 281 -LGKTYMRLENYEQAAYYLE 299
LG Y L N++QA ++ E
Sbjct: 134 SLGNAYTALGNHDQAMHFAE 153
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 28.3 bits (63), Expect = 1.0
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159
A L KAT + + + + +A++L+P + L ++ F +Q
Sbjct: 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEA 62
Query: 160 IA--NAIFDTLPTSSYEEAL 177
I + D+ + +
Sbjct: 63 IDTWVLLLDSNDPNLDRVTI 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 19/103 (18%)
Query: 115 RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174
++ +L+ + + K + D + T +
Sbjct: 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG------------------EKLQ 183
Query: 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+A F E + + +M +E A L+
Sbjct: 184 DAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQE 225
Score = 27.4 bits (60), Expect = 7.1
Identities = 18/148 (12%), Positives = 36/148 (24%), Gaps = 19/148 (12%)
Query: 171 SSYEEALKYFLEA-EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
S + + + + + +LM Y +N + A L + Q
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ 138
Query: 230 CFEITDMP-----WYQRKIANAIFDTLP------------TSSYEEALKYFLEAEKQHPL 272
D ++ TL ++A F E +
Sbjct: 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198
Query: 273 FYSQNVLMLGKTYMRLENYEQAAYYLEM 300
+ +M +E A L+
Sbjct: 199 -TLLLLNGQAACHMAQGRWEAAEGVLQE 225
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.4 bits (64), Expect = 1.1
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYP---AVQ 308
AL F E + P Y LGK Y RL+ + A Y +E+ + +
Sbjct: 23 ASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 309 EATKLLEKAKSY 320
E KA+
Sbjct: 82 ELQDAKLKAEGL 93
Score = 27.2 bits (61), Expect = 2.7
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216
AL F E + P Y LGK Y RL+ + A
Sbjct: 23 ASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYA 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 29.9 bits (68), Expect = 1.1
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 52/167 (31%)
Query: 173 YEEALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM--TKNYP--- 222
+ +A KYF + + + LG Y + +N ++AA + NY
Sbjct: 22 FTQAKKYFEKACDLKEN--SGCF--NLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77
Query: 223 ------------VKQDKDQCFEITDMPWYQR----KIANAIFD--------TLPTSSYEE 258
V Q+ ++ + +Y + K A + T +++
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQ-----YYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132
Query: 259 ALKYFLEA-EKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
A++YF +A + +LG Y ++ ++A +
Sbjct: 133 AVEYFTKACDLNDG--DGCT--ILGSLYDAGRGTPKDLKKALASYDK 175
Score = 26.8 bits (60), Expect = 9.6
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 50/167 (29%)
Query: 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM--TKNYP--- 222
+ +AL+Y+ +A LG Y ++++A Y N
Sbjct: 93 NTNKALQYYSKACDLK-YAEGCA--SLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGC 149
Query: 223 ------------VKQDKDQCFEITDMPWYQR----KIANAIFD--------TLPTSSYEE 258
+D + Y + K + F+ T +++E
Sbjct: 150 TILGSLYDAGRGTPKDLKKALA-----SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204
Query: 259 ALKYFLE-AEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEM 300
AL + + E ++ LG N +QA +
Sbjct: 205 ALARYSKACELENG--GGCF--NLGAMQYNGEGVTRNEKQAIENFKK 247
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 29.0 bits (64), Expect = 1.2
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149
D + +W +L E + Q ++ +A+ + P ++ +G
Sbjct: 34 LDADNLTRW-GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN---A 89
Query: 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188
T + A +++ A ++F +A + P
Sbjct: 90 YTSFAFLTPDETEA------KHNFDLATQFFQQAVDEQP 122
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 29.7 bits (67), Expect = 1.4
Identities = 18/168 (10%), Positives = 35/168 (20%), Gaps = 36/168 (21%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
+ L P+ + + + L +A
Sbjct: 62 GAPLNLTPEQVVAIASHDGGKQALET--------------------VQRLLPVLCQAHGL 101
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246
P + LE ++ Q +T P IA+
Sbjct: 102 TPQ-QVVAIASHDGGKQALETVQRL------------LPVLCQAHGLT--PEQVVAIASH 146
Query: 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
+ + L +A P + G LE ++
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTP-EQVVAIASNGGGKQALETVQRL 193
Score = 27.8 bits (62), Expect = 5.1
Identities = 11/99 (11%), Positives = 21/99 (21%), Gaps = 15/99 (15%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITD----MPWYQRKI------ANAIFDTLPTSS---- 172
+A L P + + +P + AI
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211
+ L +A P + LE ++
Sbjct: 394 VQRLLPVLCQAHGLTPE-QVVAIASHDGGKQALETVQRL 431
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 28.6 bits (63), Expect = 2.4
Identities = 24/206 (11%), Positives = 53/206 (25%), Gaps = 21/206 (10%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183
++ K + W + + + I + ++ L L
Sbjct: 95 YNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE------LKKLLNQQLTG 148
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKI 243
+ Y +N + Y ++ E ++ F++ +
Sbjct: 149 IDVYQNLYIEN--AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV-------KVR 199
Query: 244 ANAIFDTLPTSSYEEALKYFLEA-----EKQHPLFYSQNVLMLGKTYMRLENYEQAA-YY 297
N S YEE+L +A Q G+ +LE E
Sbjct: 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259
Query: 298 LEMTKNYPAVQEATKLLEKAKSYLKK 323
+ + + E E + + +
Sbjct: 260 YKKASFFFDILEMHAYKEALVNKISR 285
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 28.5 bits (63), Expect = 2.7
Identities = 21/218 (9%), Positives = 44/218 (20%), Gaps = 47/218 (21%)
Query: 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157
W+ I ++ ++++ +G +IT
Sbjct: 43 WIGRIRCGDTDRVTLFRAWYSRRNF-GQLSGSVQISMSTLNARIAIGGLYGDITYPVTSP 101
Query: 158 RKI----------------ANAIFDTLP------------------TSSYEEALKYFLEA 183
I A + P + + + A
Sbjct: 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSA 161
Query: 184 EK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
K + G L + +A L + P + + WY
Sbjct: 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA-----RAIAWYLAM 216
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280
+ + A+ + HP L
Sbjct: 217 ARRS------QGNESAAVALLEWLQTTHPEPKVAAALK 248
Score = 27.4 bits (60), Expect = 6.4
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 253 TSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311
+ + + A K + G L + +A L + PA +
Sbjct: 148 AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA 207
Query: 312 KLL 314
+ +
Sbjct: 208 RAI 210
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 28.1 bits (62), Expect = 4.4
Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 19/133 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYS-----QNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQD 226
++ L+Y + K+ S V+ Y E+ Y LEM K P
Sbjct: 216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP---- 271
Query: 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286
++ W K I S Y L L+ + H Y L+ M
Sbjct: 272 HNES------AWNYLK---GILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322
Query: 287 RLENYEQAAYYLE 299
+ L
Sbjct: 323 LENQCDNKEDILN 335
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.6
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 26 EEQQFEEVNKMLESS--EYKED 45
E+Q K L++S Y +D
Sbjct: 18 EKQAL----KKLQASLKLYADD 35
Score = 26.8 bits (58), Expect = 7.1
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 12/31 (38%)
Query: 113 KARIQQLETIKHHMNKAIELK---PDDSTTL 140
K +++L+ LK D + L
Sbjct: 19 KQALKKLQA---------SLKLYADDSAPAL 40
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 27.0 bits (60), Expect = 4.8
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315
Y +A KQ P + + L YEQ L + E + +
Sbjct: 43 YRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101
Query: 316 KAKSY 320
+A +
Sbjct: 102 QAILF 106
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 27.3 bits (61), Expect = 6.2
Identities = 15/143 (10%), Positives = 31/143 (21%), Gaps = 35/143 (24%)
Query: 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI 130
++ + + + + N G + +E +K
Sbjct: 159 DEKQAKEVLKQHFEKSDKEQWGW----------NIVEFYLGNISEQTLMERLKADATDNT 208
Query: 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190
L S T F LG + + D + A F A +
Sbjct: 209 SLAEHLSETNFYLGKYYLSLGD--------------------LDSATALFKLAVANNVHN 248
Query: 191 YS--QNVLMLGKTYMRLENYEQA 211
+ + L +
Sbjct: 249 FVEHRY---ALLELSLLGQDQDD 268
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 26.5 bits (59), Expect = 6.4
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315
E+A++ E + + ++ +G +Y + E Y+ A ++ + + K +
Sbjct: 61 CEKAIEVGRENREDYRQ-IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
Query: 316 KAKSYLKK 323
+A+ LK+
Sbjct: 120 QAEKILKE 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 27.6 bits (61), Expect = 6.5
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 173 YEEALKYFLEA-----EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227
+A+ + +A ++ ++ + + +R + +++AA L+ ++K
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ--------KEK 182
Query: 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 268
E+ + P +K + L + Y A K E+
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 27.2 bits (60), Expect = 6.5
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
+ L+ DL EE ++ +E+ D+ V+ L +H ++ +
Sbjct: 8 DSTLRYLQDL--LAWVEENQHRVDGAEWGVDLPS------VEAQLGSHRGLHQSIEEFRA 59
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATL-EGTKARIQQLETIKHHMNKAIEL 132
+ L A L + + A L +KAR++ LE++ + A +
Sbjct: 60 KIERARSDEGQLSP-ATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKE 117
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 27.5 bits (61), Expect = 7.0
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 197 MLGKTYMRLENYEQAAYYLE--MTKNYPVKQDKDQCFEITD 235
+L NY +A Y + + ++T
Sbjct: 202 VLAHICAWQGNYAEAETYSAFIIDHASEINAKYTSIADLTS 242
>3jq1_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Length = 481
Score = 27.4 bits (61), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 197 MLGKTYMRLENYEQAAYYLE 216
LGK Y+ EN+++A LE
Sbjct: 185 ALGKIYVYEENWQEAINVLE 204
Score = 27.4 bits (61), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 280 MLGKTYMRLENYEQAAYYLE 299
LGK Y+ EN+++A LE
Sbjct: 185 ALGKIYVYEENWQEAINVLE 204
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme
biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4
cluster; HET: SAM; 2.07A {Escherichia coli} SCOP:
c.1.28.2
Length = 457
Score = 27.3 bits (61), Expect = 8.7
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 117 QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW---YQRKIANAIFDTLPTSS- 172
Q E+ + + EL P D ++F +P QRKI +A LP+
Sbjct: 217 QTPESFAFTLKRVAELNP-DRLSVFNY-------AHLPTIFAAQRKIKDA---DLPSPQQ 265
Query: 173 ----YEEALKYFLEA 183
+E + + ++
Sbjct: 266 KLDILQETIAFLTQS 280
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 26.7 bits (60), Expect = 9.1
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 27/88 (30%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
KA+ ++ +MLG ++ + AL Y A +
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQ--------------------PKLALPYLQRAVEL 154
Query: 187 HPLF---YSQNVLMLGKTYMRLENYEQA 211
+ Q G ++A
Sbjct: 155 NENDTEARFQ----FGMCLANEGMLDEA 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.372
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,836,148
Number of extensions: 287041
Number of successful extensions: 1629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 324
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)