RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11738
(323 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 38.5 bits (88), Expect = 7e-04
Identities = 22/190 (11%), Positives = 50/190 (26%), Gaps = 30/190 (15%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCF-------------EITDMPWYQRKIANAIFDTL-P 169
HH KA+ L P+ LG + + +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+ A+ + A + P + L + +A
Sbjct: 250 QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTA----------- 297
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
+ P + + N + EEA++ + +A + P ++ L +
Sbjct: 298 ---LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQG 353
Query: 290 NYEQAAYYLE 299
++A + +
Sbjct: 354 KLQEALMHYK 363
Score = 37.3 bits (85), Expect = 0.002
Identities = 26/216 (12%), Positives = 50/216 (23%), Gaps = 12/216 (5%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
Q D+ + L+ I + ++L+ H AI+ P + LG
Sbjct: 25 LWRQEPDNTGVLLLLSSIH----------FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204
++ + P Q + +
Sbjct: 75 -NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264
L L + I P + +N A+ +F
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300
+A P F + LG +++A
Sbjct: 194 KAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLR 228
Score = 26.9 bits (58), Expect = 3.2
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 37/166 (22%)
Query: 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101
Y+ +E+ NLA + A AL H LA
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAE------AEDCYNTALRLCPTHADSLNNLAN 313
Query: 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161
I E+ +E KA+E+ P+ + L +
Sbjct: 314 IKREQ----------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------- 354
Query: 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 207
+EAL ++ EA + P ++ +G T +++
Sbjct: 355 -----------LQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388
Score = 25.8 bits (55), Expect = 8.5
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 21/123 (17%)
Query: 118 QLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177
E + H + +PD++ L +L F+ + +
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------------LDRSA 53
Query: 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237
+ A KQ+PL ++ LG Y ++A + +
Sbjct: 54 HFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112
Query: 238 WYQ 240
Sbjct: 113 AAG 115
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-KNYPVKQDKDQCF 231
++ AL F + H +G Y L+N +A +
Sbjct: 21 WKGALDAFSAVQDPHSRICFN----IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76
Query: 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291
+ + +A L + Q LF + + + Y + E +
Sbjct: 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136
Query: 292 EQAAYYLEM------TKNYPAVQEATKLLEKAKSY 320
++A L + + + +A + + K K Y
Sbjct: 137 KKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 171
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 29.4 bits (65), Expect = 0.46
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226
LP +YF + QN++++GK + + L+ N + ++
Sbjct: 21 DLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTW--FSIPEKNRPLKGRINLVLSRE 78
Query: 227 KDQCFEITDMPWYQRKIANAIF 248
+ + A +
Sbjct: 79 LKEPPQGAHFLSRSLDDALKLT 100
Score = 25.5 bits (55), Expect = 6.9
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304
LP +YF + QN++++GK + + L+ N
Sbjct: 21 DLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTW--FSIPEKNRPLKGRINL 73
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 28.3 bits (62), Expect = 0.73
Identities = 17/126 (13%), Positives = 46/126 (36%), Gaps = 8/126 (6%)
Query: 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257
LG + ++++ A + + K + +T + E
Sbjct: 10 LGNDAYKKKDFDTALKHYD-------KAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 258 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKA 317
+A++ E + + ++ +G +Y + E Y+ A ++ + + K ++A
Sbjct: 63 KAIEVGRENREDYR-QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
Query: 318 KSYLKK 323
+ LK+
Sbjct: 122 EKILKE 127
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 29.0 bits (64), Expect = 0.93
Identities = 22/219 (10%), Positives = 54/219 (24%), Gaps = 34/219 (15%)
Query: 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 178
L++ ++ + +A LK D + + ++ + + Y++ L
Sbjct: 3 LQSAQY-LRQAEVLKADMTDSKLGPAEVWTS-------RQALQDL---------YQKMLV 45
Query: 179 ---YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235
+ +K ++ T E+ N + + F
Sbjct: 46 TDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQL 105
Query: 236 MPWYQRKIA----------NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285
+ + + +K + ++ LG
Sbjct: 106 LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YICQHCLVHLGDIA 162
Query: 286 MRLENYEQA-AYYLEMTKNYPAVQEATKLLEKAKSYLKK 323
QA +YY + P+ + L S
Sbjct: 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 27.4 bits (61), Expect = 1.1
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-KNYPAVQEATKLLE 315
+K + K+ + + L +L Y A Y++ ++ ++ L
Sbjct: 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114
Query: 316 KAKSYLKK 323
+ ++K
Sbjct: 115 MVEDKIQK 122
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 28.2 bits (61), Expect = 1.2
Identities = 23/185 (12%), Positives = 51/185 (27%)
Query: 115 RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174
+ ++ ++A+ ++PD LG++ + + + + +
Sbjct: 49 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 108
Query: 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234
L + L + + K+ Q FE +
Sbjct: 109 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168
Query: 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
D + I + + E LK S+ LGK Y+ L + + A
Sbjct: 169 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 228
Query: 295 AYYLE 299
+
Sbjct: 229 TALFK 233
>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548
{Salmonella typhimurium [TaxId: 90371]}
Length = 246
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 155 WYQRKIANAIFDTLPTSSYEEALKYFLEA 183
W+ I + +D+ +S YEE + LE
Sbjct: 10 WHIHMIHSKGYDSFTSSKYEEGATWLLEC 38
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 238 WYQRKIANAIFDTLPTSSYEEALKYFLEA 266
W+ I + +D+ +S YEE + LE
Sbjct: 10 WHIHMIHSKGYDSFTSSKYEEGATWLLEC 38
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 27.5 bits (59), Expect = 2.7
Identities = 19/180 (10%), Positives = 36/180 (20%), Gaps = 21/180 (11%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186
A++ P LG E A+ +
Sbjct: 43 EAAVQQDPKHMEAWQYLGTTQAENEQ--------------------ELLAISALRRCLEL 82
Query: 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246
P + + + + + + P E
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 247 IFDTLPTSSYEEALKYFLEA-EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305
+ L S + E + FL A LG + Y++A +
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 26.2 bits (57), Expect = 2.7
Identities = 11/102 (10%), Positives = 23/102 (22%), Gaps = 18/102 (17%)
Query: 117 QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176
+ L + +T F +
Sbjct: 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------------NDDIRKG 55
Query: 177 LKYFLEAEKQHPLFYSQNVLM-LGKTYMRLENYEQAAYYLEM 217
+ E + ++ + L RL+ YE+A Y+
Sbjct: 56 IVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 97
Score = 25.8 bits (56), Expect = 3.6
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM-LGKTYMRLENYEQ 293
Q + A + T + + E + ++ + L RL+ YE+
Sbjct: 31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90
Query: 294 AAYYLEMT-KNYPAVQEATKLLEKAKSYLKK 323
A Y+ + P +A +L +KK
Sbjct: 91 ALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 26.9 bits (59), Expect = 3.6
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 21/100 (21%)
Query: 118 QLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177
QL+ + +AI+ P D++ D +E A
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------------FERAD 50
Query: 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217
+ +++ K P Y L + + A
Sbjct: 51 EQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDFAQGAAT 89
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB)
{Helicobacter pylori [TaxId: 210]}
Length = 133
Score = 25.1 bits (53), Expect = 7.2
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 16/128 (12%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
++A++Y+++A + + +F L N ++ YL +
Sbjct: 9 LKKAIQYYVKACELNEMFG-----CLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGD 63
Query: 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE 292
+ Y +K Y ++N +
Sbjct: 64 FYENGKYVKKDLRKAAQ-----------YYSKACGLNDQDGCLILGYKQYAGKGVVKNEK 112
Query: 293 QAAYYLEM 300
QA E
Sbjct: 113 QAVKTFEK 120
>d1qfxa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus niger [TaxId: 5061]}
Length = 447
Score = 25.9 bits (56), Expect = 7.2
Identities = 13/107 (12%), Positives = 33/107 (30%)
Query: 104 NEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163
N++ T + ++ Q + +N ++ ++ L + + + I
Sbjct: 188 NDQTTCDNLTYQLPQFKVAAARLNSQNPGMNLTASDVYNLMVMASFELNARPFSNWINAF 247
Query: 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210
D + Y E L Y+ A + + + L +
Sbjct: 248 TQDEWVSFGYVEDLNYYYCAGPGDKNMAAVGAVYANASLTLLNQGPK 294
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.372
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,184,596
Number of extensions: 55208
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 60
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)