BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1174
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+V+AI+G+ T + EL+R +TIKLGYA I C E C +P Y++
Sbjct: 13 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVC--ESCKKPEAYVT 70
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S C + +R +SF+D PGH++LMATML+GAA+MD A+L++ +
Sbjct: 71 EPS-------CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 123
Query: 141 AKTPE 145
P+
Sbjct: 124 FPQPQ 128
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+V+AI+G+ T + EL+R +TIKLGYA I C E C +P Y++
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVC--ESCKKPEAYVT 69
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S C + +R +SF+D PGH++LMATML+GAA+MD A+L++ +
Sbjct: 70 EPS-------CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 122
Query: 141 AKTPE 145
P+
Sbjct: 123 FPQPQ 127
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 18/127 (14%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDN--EKCSRPACY 78
G +GHV HGK+++ KA++GV T R EL R I+I+LGYA+ +I KC ++P C
Sbjct: 12 GMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC- 70
Query: 79 ISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138
+C + +R VSFVD PGH+ LMATML+GA++MD A+L+I +
Sbjct: 71 ---------------PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAAN 115
Query: 139 NAAKTPE 145
P+
Sbjct: 116 EPCPQPQ 122
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 22/129 (17%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSR----PA 76
G +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C N C R P
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPN--CGRYSTSPV 71
Query: 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
C C + VR VSF+D PGH+ LM TML GA++MD A+L+I
Sbjct: 72 C----------------PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIA 115
Query: 137 CDNAAKTPE 145
+ P+
Sbjct: 116 ANEPCPRPQ 124
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 22/129 (17%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSR----PA 76
G +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C N C R P
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPN--CGRYSTSPV 71
Query: 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
C C + VR VSF+D PGH+ LM TML GA++MD A+L+I
Sbjct: 72 C----------------PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIA 115
Query: 137 CDNAAKTPE 145
+ P+
Sbjct: 116 ANEPCPRPQ 124
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 14/125 (11%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+V+AI+G+ T + E TIKLGYA I C E C +P Y++
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEE-----TIKLGYAETNIGVC--ESCKKPEAYVT 64
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S C + +R +SF+D PGH++LMATML+GAA+MD A+L++ +
Sbjct: 65 EPS-------CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 117
Query: 141 AKTPE 145
P+
Sbjct: 118 FPQPQ 122
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 22/129 (17%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSR----PA 76
G +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C N C R P
Sbjct: 15 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSN--CGRYSTSPI 72
Query: 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
C C + +R VSF+D PGH+ LM TML GA++MD A+L+I
Sbjct: 73 C----------------PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIA 116
Query: 137 CDNAAKTPE 145
+ P+
Sbjct: 117 ANEPCPRPQ 125
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 22/129 (17%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSR----PA 76
G +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C N C R P
Sbjct: 14 GXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPN--CGRYSTSPV 71
Query: 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
C C + VR VSF+D PGH+ L T L GA++ D A+L+I
Sbjct: 72 C----------------PYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIA 115
Query: 137 CDNAAKTPE 145
+ P+
Sbjct: 116 ANEPCPRPQ 124
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 20/125 (16%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+V+AI+G+ T + KLGYA I C E C +P Y++
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSK-----------KLGYAETNIGVC--ESCKKPEAYVT 58
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S C + +R +SF+D PGH++LMATML+GAA+MD A+L++ +
Sbjct: 59 EPS-------CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 111
Query: 141 AKTPE 145
P+
Sbjct: 112 FPQPQ 116
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 50.1 bits (118), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 300 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 347
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
S+ + P RH + VDCPGH + M+ GAA MD A+L++
Sbjct: 348 NTSHVEYDTP------------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVA 391
Score = 36.2 bits (82), Expect = 0.012, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLIG 174
VDCPGH + M+ GAA MD A+L++
Sbjct: 364 VDCPGHADYVKNMITGAAQMDGAILVVA 391
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 63
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 64 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYVKNMITGAAQMDGAILVV 106
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 63
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 64 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYVKNMITGAAQMDGAILVV 106
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 62
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 63 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVV 105
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 62
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 63 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVV 105
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 62
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 63 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVV 105
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 7 GTIGHVDHGKTTLTAAITTVLAKTY------------GGAARAFDQIDNAPEEKARGITI 54
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 55 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 102
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 71 VDCPGHADYVKNMITGAAQMDGAILVV 97
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + G A + DN +
Sbjct: 300 GTIGHVDHGKTTLTAAITTV------------LAKTYGGAARAFDQIDNAPEEKARGITI 347
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139
S+ + P RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 348 NTSHVEYDTPT------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 394
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 364 VDCPGHADYVKNMITGAAQMDGAILVV 390
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTFVTAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTFVTAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVTAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVTAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 16 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 67
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 68 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 109
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 81 VDCPGHADYIKNMITGAAQMDGAILVV 107
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V N+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPEERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDCPGH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVV 106
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKC---SRPAC 77
GTIGHV HGK+T+ A++ V RN+ +K Y + I K E+ +
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAE-----NRNVEVK-DYGD--IDKAREERARGITINTA 66
Query: 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + K RH S VDC GH + M+ GAA MD A+L++
Sbjct: 67 HVEYETAK------------------RHYSHVDCRGHADYIKNMITGAAQMDGAILVVSA 108
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDC GH + M+ GAA MD A+L++
Sbjct: 80 VDCRGHADYIKNMITGAAQMDGAILVV 106
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 38/120 (31%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
GTIGHV HGK+T+ AI+ V + R ITI N + D
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTYGGAA-RGITI-----NTSHVEYDTP---------- 58
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 59 ----------------------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 96
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 65 VDCPGHADYVKNMITGAAQMDGAILVV 91
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK-CDNEKCSRPACYI 79
GTIGHV HGK+T+ AI+ I + G A K Y+ DN R
Sbjct: 7 GTIGHVDHGKTTLTAAIT-------------KILAEGGGAKFKKYEEIDNAPEERARGIT 53
Query: 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139
++ + S RH + DCPGH + M+ G A +D +L++ ++
Sbjct: 54 INAAHVEYSTAA------------RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101
Query: 140 A 140
Sbjct: 102 G 102
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 148 DCPGHDILMATMLNGAAVMDAALLLI 173
DCPGH + M+ G A +D +L++
Sbjct: 72 DCPGHADYVKNMITGTAPLDGCILVV 97
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 41/127 (32%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNEL----ERNITIKLGYANAKIYKCDNEKCSRPA 76
G GH+ HGK+T+ K ++ + + ++L +R ITI +G++ +K +N +
Sbjct: 23 GIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSA---FKLENYR----- 74
Query: 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIG 136
++ VD PGH L+ +++ A ++D AL+++
Sbjct: 75 -----------------------------ITLVDAPGHADLIRAVVSAADIIDLALIVVD 105
Query: 137 CDNAAKT 143
KT
Sbjct: 106 AKEGPKT 112
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
+VD PGH L+ +++ A ++D AL+++
Sbjct: 77 LVDAPGHADLIRAVVSAADIIDLALIVV 104
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
RH + VDCPGH + M+ GAA MD A+L++ +
Sbjct: 16 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 52
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVV 47
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 8 QSNWVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK- 66
+ +V ++ GTIGHV HGK+T+ AI+ I + G A K Y+
Sbjct: 5 KKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT-------------KILAEGGGAKFKKYEE 51
Query: 67 CDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAA 126
DN R ++ + S RH + DCPGH + + G A
Sbjct: 52 IDNAPEERARGITINAAHVEYS------------TAARHYAHTDCPGHADYVKNXITGTA 99
Query: 127 VMDAALLLIGCDNA 140
+D +L++ ++
Sbjct: 100 PLDGCILVVAANDG 113
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
IGHV HGKST+V + + F +E T+K AK ++EK + ++ R
Sbjct: 12 IGHVDHGKSTLVGRL--LMDRGFIDEK----TVKEAEEAAKKLGKESEKFA----FLLDR 61
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHV-SFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
++ + RF+ ++ + +D PGH + M+ GA+ DAA+L++
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSA 117
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
I+D PGH + M+ GA+ DAA+L++
Sbjct: 88 IIDAPGHRDFVKNMITGASQADAAILVV 115
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
RH + VD PGH + M+ GAA MD A+L++ +
Sbjct: 16 RHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDG 52
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 VDCPGHDILMATMLNGAAVMDAALLLI 173
VD PGH + M+ GAA MD A+L++
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVV 47
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 25/121 (20%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS-- 80
IGHV GKST+ I + + K LE+ Y+ + ++ +R Y+S
Sbjct: 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------------YEREAKEKNRETWYLSWA 69
Query: 81 ---GRSNKDDSFPCLRSSCTGRFQLV---RHVSFVDCPGHDILMATMLNGAAVMDAALLL 134
+ +D ++ GR +H + +D PGH + M+ GA+ D A+L+
Sbjct: 70 LDTNQEERDKG----KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLV 125
Query: 135 I 135
I
Sbjct: 126 I 126
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
I+D PGH + M+ GA+ D A+L+I
Sbjct: 99 ILDAPGHKSFVPNMIGGASQADLAVLVI 126
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 98 GRFQLV---RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH 152
G +Q+ + ++F+D PGH+ GA V D +L++ D+ P+ V+ H
Sbjct: 46 GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV-MPQTVEAINH 102
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 71 KCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVR-HVSFVDCPGHDILMATMLNGAAVMD 129
K S +I ++N++ S CT F R + + VD PGH + + G + D
Sbjct: 77 KSSFKFAWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQAD 136
Query: 130 AALLLIGCDNAA 141
A+L + C A
Sbjct: 137 XAILCVDCSTNA 148
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 22 TIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC------DNEKCSRP 75
IGHV HGKST+V ++ +LGY K K K S
Sbjct: 11 VIGHVDHGKSTLVG----------------HLLYRLGYIEEKKLKELEEQAKSRGKESFK 54
Query: 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVRHV-SFVDCPGHDILMATMLNGAAVMDAALLL 134
+I + ++ +F+ ++V + +D PGH + M+ GA+ DAA+L+
Sbjct: 55 FAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILV 114
Query: 135 IGC 137
+
Sbjct: 115 VSA 117
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
I+D PGH + M+ GA+ DAA+L++
Sbjct: 88 IIDAPGHRDFVKNMITGASQADAAILVV 115
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 22 TIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC------DNEKCSRP 75
IGHV HGKST+V ++ +LGY K K K S
Sbjct: 14 VIGHVDHGKSTLVG----------------HLLYRLGYIEEKKLKELEEQAKSRGKESFK 57
Query: 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVRHV-SFVDCPGHDILMATMLNGAAVMDAALLL 134
+I + ++ +F+ ++V + +D PGH + M+ GA+ DAA+L+
Sbjct: 58 FAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILV 117
Query: 135 IGC 137
+
Sbjct: 118 VSA 120
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
I+D PGH + M+ GA+ DAA+L++
Sbjct: 91 IIDAPGHRDFVKNMITGASQADAAILVV 118
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 23 IGHVAHGKSTV-------VKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRP 75
+GHV GKST+ + ++ Q + + E E +G K S
Sbjct: 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESE-----TMG------------KSSFK 215
Query: 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVR-HVSFVDCPGHDILMATMLNGAAVMDAALLL 134
+I ++N++ S CT F R + + VD PGH + + G + D A+L
Sbjct: 216 FAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILC 275
Query: 135 IGCDNAA 141
+ C A
Sbjct: 276 VDCSTNA 282
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 71 KCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVR-HVSFVDCPGHDILMATMLNGAAVMD 129
K S +I ++N++ S CT F R + + VD PGH + + G + D
Sbjct: 77 KSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQAD 136
Query: 130 AALLLIGCDNAA 141
A+L + C A
Sbjct: 137 MAILCVDCSTNA 148
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC 137
R S +D PGH + M+NGA+ D +L+I
Sbjct: 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISA 154
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI----GKFK 177
++D PGH + M+NGA+ D +L+I G+F+
Sbjct: 125 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 100 FQLVRHVS-FVDCPGHDILMATMLNGAAVMDAALLLIGCD 138
+ L VS F DC GH + +A +NG+ ++DA +G D
Sbjct: 308 YDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALGVD 347
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 113 GHDILMATMLNGAAVMDAALLLIGCDNAAKTPE------------IVDCPGHDILMATML 160
G D A++ G AV D ++ L AA E DC GH + +A +
Sbjct: 272 GGDNAXASLGLGXAVGDVSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLACTI 331
Query: 161 NGAAVMDAALLLIG 174
NG+ ++DA +G
Sbjct: 332 NGSRILDAGRAALG 345
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 106 VSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH 152
++F+D PGH + GA D +L++ D+ P+ ++ H
Sbjct: 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-MPQTIEAIQH 98
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 106 VSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139
++F+D PGH A G V D +L++ D+
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD 87
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 30.4 bits (67), Expect = 0.56, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 21 GTIGHVAHGKSTVVKAISGV 40
GTIGHV HGK+T+ AI+ V
Sbjct: 8 GTIGHVDHGKTTLTAAITTV 27
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 128 MDAALLLIGCDNAAKTPEIVDCPGHDILMATMLNGAAVMDAALLLI 173
MD A D K EI D PGH ++ M+ GA+ D A+L++
Sbjct: 243 MDVASTTFESDK--KIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
+GHV HGK+T++ I G + IT +G P I G
Sbjct: 11 LGHVDHGKTTLLDHIRGSAVA---SREAGGITQHIGATEI------------PXDVIEGI 55
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK 142
+R + G F F+D PGH+ G A+ D A+L++ + K
Sbjct: 56 CGDFLKKFSIRETLPGLF-------FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK 108
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 30.0 bits (66), Expect = 0.66, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
+GHV HGK+T++ I G + IT +G P I G
Sbjct: 11 LGHVDHGKTTLLDHIRGSAVA---SREAGGITQHIGATEI------------PMDVIEGI 55
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK 142
+R + G F F+D PGH+ G A+ D A+L++ + K
Sbjct: 56 CGDFLKKFSIRETLPGLF-------FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK 108
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 99 RFQLVRH-VSFVDCPGHDILMATMLNGAAVMDAALLLI 135
+F+ ++ V+ +D PGH + M+ G + D A+L+I
Sbjct: 79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
++D PGH + M+ G + D A+L+I
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILII 116
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.6 bits (65), Expect = 0.88, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 106 VSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK 142
V+ +D PGH +A + +V+D A+LLI + +
Sbjct: 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ 105
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
I+D PGH +A + +V+D A+LLI
Sbjct: 71 IIDTPGHMDFLAEVYRSLSVLDGAILLI 98
>pdb|1DLG|A Chain A, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1DLG|B Chain B, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1RYW|A Chain A, C115s Mura Liganded With Reaction Products
pdb|1RYW|B Chain B, C115s Mura Liganded With Reaction Products
pdb|1RYW|C Chain C, C115s Mura Liganded With Reaction Products
pdb|1RYW|D Chain D, C115s Mura Liganded With Reaction Products
pdb|1RYW|E Chain E, C115s Mura Liganded With Reaction Products
pdb|1RYW|F Chain F, C115s Mura Liganded With Reaction Products
pdb|1RYW|G Chain G, C115s Mura Liganded With Reaction Products
pdb|1RYW|H Chain H, C115s Mura Liganded With Reaction Products
Length = 419
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|3SU9|A Chain A, E. Cloacae Mura In Complex With Udp-N-Acetylmuramic Acid
And Covalent Adduct Of Pep With Cys115
pdb|3SWI|A Chain A, E. Cloacae Mura In Complex With
Enolpyruvyl-Udp-N-Acetylgalactosamine And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|1NAW|A Chain A, Enolpyruvyl Transferase
pdb|1NAW|B Chain B, Enolpyruvyl Transferase
Length = 419
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|3V4T|A Chain A, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|B Chain B, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|C Chain C, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|D Chain D, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|E Chain E, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|F Chain F, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|G Chain G, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|H Chain H, E. Cloacae C115d Mura Liganded With Unag
pdb|3V5V|A Chain A, Unliganded E.Cloacae C115d Mura
pdb|3V5V|B Chain B, Unliganded E.Cloacae C115d Mura
pdb|3V5V|C Chain C, Unliganded E.Cloacae C115d Mura
pdb|3V5V|D Chain D, Unliganded E.Cloacae C115d Mura
Length = 419
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|3SWA|A Chain A, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
pdb|3SWA|B Chain B, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|1EJC|A Chain A, Crystal Structure Of Unliganded Mura (Type2)
pdb|1EJD|A Chain A, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EJD|B Chain B, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EYN|A Chain A, Structure Of Mura Liganded With The Extrinsic Fluorescence
Probe Ans
pdb|1YBG|A Chain A, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|B Chain B, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|C Chain C, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|D Chain D, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|3KQA|A Chain A, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|B Chain B, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|C Chain C, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|D Chain D, Mura Dead-End Complex With Terreic Acid
pdb|3LTH|A Chain A, E. Cloacae Mura Dead-End Complex With Unag And Fosfomycin
pdb|3SPB|A Chain A, Unliganded E. Cloacae Mura
pdb|3SPB|B Chain B, Unliganded E. Cloacae Mura
pdb|3SPB|C Chain C, Unliganded E. Cloacae Mura
pdb|3SPB|D Chain D, Unliganded E. Cloacae Mura
pdb|3SWQ|A Chain A, E. Cloacae Mura In Complex With Enolpyruvyl-Unag
pdb|3UPK|A Chain A, E. Cloacae Mura In Complex With Unag
Length = 419
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
>pdb|1Q3G|A Chain A, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|B Chain B, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|C Chain C, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|D Chain D, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|E Chain E, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|F Chain F, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|G Chain G, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|H Chain H, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|I Chain I, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|J Chain J, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|K Chain K, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|L Chain L, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|W Chain W, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|X Chain X, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Y Chain Y, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Z Chain Z, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
Length = 419
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIGC---DNAAKTPEI 146
+++S GR + G I+M + GA V M AA L G +NAA+ PEI
Sbjct: 143 VKASVNGRLK-----------GAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEI 191
Query: 147 VDCPGHDILMATMLNG 162
VD + + ++G
Sbjct: 192 VDTANFLVALGAKISG 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,241,463
Number of Sequences: 62578
Number of extensions: 189058
Number of successful extensions: 645
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 138
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)