Query psy1174
Match_columns 182
No_of_seqs 129 out of 1035
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:42:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0466|consensus 100.0 1.7E-32 3.6E-37 229.8 6.9 167 5-171 26-197 (466)
2 COG5257 GCD11 Translation init 100.0 9.8E-29 2.1E-33 208.1 10.6 144 15-172 8-159 (415)
3 PTZ00327 eukaryotic translatio 99.9 1.4E-27 3E-32 212.6 12.2 158 6-167 23-185 (460)
4 COG0050 TufB GTPases - transla 99.9 3.5E-28 7.5E-33 202.8 6.0 127 14-181 9-157 (394)
5 COG5256 TEF1 Translation elong 99.9 1.3E-26 2.9E-31 200.4 9.5 117 12-168 2-160 (428)
6 KOG0460|consensus 99.9 6.9E-27 1.5E-31 198.1 4.9 127 14-181 51-199 (449)
7 PF00009 GTP_EFTU: Elongation 99.9 6E-25 1.3E-29 173.6 4.1 117 15-167 1-136 (188)
8 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.9E-23 4.1E-28 167.2 6.7 114 16-167 1-132 (195)
9 PLN03127 Elongation factor Tu; 99.9 1.5E-22 3.3E-27 180.0 8.3 116 14-167 58-191 (447)
10 PRK12736 elongation factor Tu; 99.9 1.5E-22 3.2E-27 177.5 8.0 116 14-167 9-142 (394)
11 CHL00071 tufA elongation facto 99.9 1.2E-22 2.7E-27 178.7 6.3 117 13-167 8-142 (409)
12 cd01888 eIF2_gamma eIF2-gamma 99.9 5.2E-22 1.1E-26 159.1 9.4 146 18-167 1-151 (203)
13 TIGR00485 EF-Tu translation el 99.9 4E-22 8.6E-27 174.7 8.4 116 14-167 9-142 (394)
14 PTZ00141 elongation factor 1- 99.9 4.4E-22 9.5E-27 177.0 8.8 114 13-164 3-156 (446)
15 PLN03126 Elongation factor Tu; 99.9 4.9E-22 1.1E-26 177.9 9.1 116 14-167 78-211 (478)
16 KOG0462|consensus 99.9 8.9E-23 1.9E-27 181.3 3.8 118 15-167 58-191 (650)
17 COG0480 FusA Translation elong 99.9 1.4E-22 2.9E-27 187.6 5.0 119 14-169 7-144 (697)
18 PRK12735 elongation factor Tu; 99.9 8.7E-22 1.9E-26 172.7 9.5 116 14-167 9-142 (396)
19 cd01885 EF2 EF2 (for archaea a 99.9 2.8E-22 6.1E-27 163.5 5.2 121 18-166 1-138 (222)
20 PLN00043 elongation factor 1-a 99.9 1.1E-21 2.3E-26 174.6 9.4 117 13-166 3-158 (447)
21 PRK00049 elongation factor Tu; 99.9 1.6E-21 3.5E-26 171.0 9.1 116 14-167 9-142 (396)
22 TIGR03680 eif2g_arch translati 99.8 4.1E-21 8.9E-26 168.9 10.9 142 14-167 1-148 (406)
23 PLN00116 translation elongatio 99.8 8.6E-22 1.9E-26 186.6 6.6 131 14-166 16-163 (843)
24 KOG0458|consensus 99.8 2.6E-21 5.6E-26 172.9 7.8 116 14-169 174-331 (603)
25 TIGR02034 CysN sulfate adenyly 99.8 3.2E-21 6.9E-26 169.6 8.3 112 18-167 1-147 (406)
26 COG1217 TypA Predicted membran 99.8 1.2E-21 2.7E-26 171.6 4.8 115 15-167 3-134 (603)
27 PRK05124 cysN sulfate adenylyl 99.8 7.3E-21 1.6E-25 170.4 9.5 116 14-167 24-174 (474)
28 PRK12317 elongation factor 1-a 99.8 7.1E-21 1.5E-25 168.0 7.9 118 12-167 1-153 (425)
29 cd01886 EF-G Elongation factor 99.8 2.9E-21 6.2E-26 161.7 4.2 111 19-167 1-130 (270)
30 PRK10512 selenocysteinyl-tRNA- 99.8 1.4E-20 3E-25 173.1 9.0 113 19-168 2-119 (614)
31 TIGR01394 TypA_BipA GTP-bindin 99.8 4.9E-21 1.1E-25 175.4 5.3 113 17-167 1-130 (594)
32 COG4108 PrfC Peptide chain rel 99.8 3E-21 6.5E-26 168.2 2.7 113 17-167 12-147 (528)
33 PTZ00416 elongation factor 2; 99.8 1.2E-20 2.5E-25 178.8 6.7 124 15-166 17-157 (836)
34 PRK04000 translation initiatio 99.8 6.1E-20 1.3E-24 161.8 10.2 143 13-167 5-153 (411)
35 PRK00007 elongation factor G; 99.8 2.6E-20 5.7E-25 173.4 6.6 115 15-167 8-141 (693)
36 COG2895 CysN GTPases - Sulfate 99.8 4.9E-20 1.1E-24 157.2 7.5 114 14-168 3-154 (431)
37 COG0481 LepA Membrane GTPase L 99.8 7.8E-21 1.7E-25 167.0 2.5 119 13-167 5-142 (603)
38 KOG1145|consensus 99.8 2.8E-20 6E-25 165.6 5.7 112 16-167 152-267 (683)
39 TIGR00475 selB selenocysteine- 99.8 3.8E-20 8.3E-25 169.3 6.7 114 18-169 1-119 (581)
40 cd04166 CysN_ATPS CysN_ATPS su 99.8 9.4E-20 2E-24 146.5 8.1 111 19-167 1-144 (208)
41 PRK05506 bifunctional sulfate 99.8 8.8E-20 1.9E-24 168.4 9.1 116 14-167 21-171 (632)
42 cd01883 EF1_alpha Eukaryotic e 99.8 7.1E-20 1.5E-24 148.4 6.9 111 19-166 1-150 (219)
43 COG0532 InfB Translation initi 99.8 3.5E-20 7.6E-25 164.8 5.2 114 16-167 4-121 (509)
44 PRK12739 elongation factor G; 99.8 3.2E-20 6.9E-25 172.8 5.0 115 15-167 6-139 (691)
45 PRK07560 elongation factor EF- 99.8 4.2E-20 9.2E-25 172.9 5.4 118 15-166 18-152 (731)
46 cd04169 RF3 RF3 subfamily. Pe 99.8 1E-19 2.2E-24 152.1 6.1 113 17-167 2-137 (267)
47 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.8E-19 4E-24 147.0 6.7 136 19-168 1-153 (224)
48 cd04168 TetM_like Tet(M)-like 99.8 1.1E-19 2.4E-24 149.4 4.4 110 19-166 1-129 (237)
49 COG3276 SelB Selenocysteine-sp 99.8 4.6E-19 1E-23 154.7 8.2 110 19-169 2-119 (447)
50 TIGR00483 EF-1_alpha translati 99.8 7.6E-19 1.7E-23 155.2 9.6 117 13-166 3-154 (426)
51 KOG0469|consensus 99.8 6.7E-20 1.4E-24 162.1 2.3 132 12-165 14-162 (842)
52 KOG0461|consensus 99.8 8.4E-19 1.8E-23 149.6 8.7 120 16-167 6-136 (522)
53 PRK00741 prfC peptide chain re 99.8 2.6E-19 5.7E-24 162.1 5.6 115 15-167 8-145 (526)
54 PRK05433 GTP-binding protein L 99.8 4.9E-19 1.1E-23 162.5 6.4 123 12-167 2-140 (600)
55 TIGR00484 EF-G translation elo 99.8 4.5E-19 9.7E-24 165.1 5.0 115 15-167 8-141 (689)
56 TIGR00503 prfC peptide chain r 99.8 8.7E-19 1.9E-23 158.7 6.0 114 15-166 9-145 (527)
57 cd01889 SelB_euk SelB subfamil 99.7 2.1E-18 4.6E-23 136.4 6.3 126 18-167 1-134 (192)
58 PRK10218 GTP-binding protein; 99.7 1.2E-18 2.5E-23 160.0 4.7 114 16-167 4-134 (607)
59 TIGR00490 aEF-2 translation el 99.7 1.8E-18 3.9E-23 161.8 5.1 118 15-166 17-151 (720)
60 cd04167 Snu114p Snu114p subfam 99.7 2.6E-18 5.7E-23 138.3 5.3 116 18-166 1-136 (213)
61 TIGR01393 lepA GTP-binding pro 99.7 2.8E-18 6.2E-23 157.4 6.0 119 16-167 2-136 (595)
62 cd04171 SelB SelB subfamily. 99.7 1.1E-17 2.4E-22 126.9 7.1 113 19-168 2-119 (164)
63 KOG0467|consensus 99.7 2.3E-18 5.1E-23 157.6 3.5 113 14-164 6-135 (887)
64 PRK05306 infB translation init 99.7 6.4E-18 1.4E-22 158.6 5.7 111 16-167 289-403 (787)
65 KOG0468|consensus 99.7 1.2E-17 2.6E-22 151.4 5.7 119 15-166 126-262 (971)
66 TIGR00487 IF-2 translation ini 99.7 1.8E-17 3.8E-22 151.8 6.0 111 16-166 86-200 (587)
67 KOG0464|consensus 99.7 6.2E-18 1.3E-22 147.2 2.8 114 16-167 36-168 (753)
68 CHL00189 infB translation init 99.7 2.1E-17 4.6E-22 154.1 5.9 115 16-167 243-361 (742)
69 cd01890 LepA LepA subfamily. 99.7 3.5E-17 7.5E-22 126.7 6.0 116 18-166 1-132 (179)
70 cd04170 EF-G_bact Elongation f 99.7 2.6E-17 5.6E-22 137.1 5.1 111 19-167 1-130 (268)
71 PRK13351 elongation factor G; 99.7 2.3E-17 4.9E-22 153.6 4.5 115 15-167 6-139 (687)
72 KOG0465|consensus 99.6 7.4E-18 1.6E-22 151.5 -2.0 115 15-167 37-170 (721)
73 cd01891 TypA_BipA TypA (tyrosi 99.6 1.7E-16 3.7E-21 125.6 5.7 112 17-166 2-130 (194)
74 COG1159 Era GTPase [General fu 99.6 2.5E-16 5.4E-21 132.1 6.1 113 17-170 6-131 (298)
75 COG5258 GTPBP1 GTPase [General 99.6 1E-16 2.2E-21 138.3 2.6 140 15-169 115-271 (527)
76 PRK04004 translation initiatio 99.6 8E-16 1.7E-20 141.0 6.2 127 17-166 6-136 (586)
77 TIGR00491 aIF-2 translation in 99.6 1.4E-15 3E-20 139.4 5.5 128 17-167 4-135 (590)
78 cd00881 GTP_translation_factor 99.6 2.2E-15 4.8E-20 116.6 5.9 111 19-167 1-128 (189)
79 PRK12740 elongation factor G; 99.6 2.9E-15 6.3E-20 139.1 5.2 106 23-166 1-125 (668)
80 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 5.9E-15 1.3E-19 112.6 5.3 111 19-167 2-116 (168)
81 KOG0459|consensus 99.5 3.8E-15 8.3E-20 129.1 0.3 111 15-165 77-229 (501)
82 COG1160 Predicted GTPases [Gen 99.4 7.3E-14 1.6E-18 122.9 4.6 110 18-167 4-126 (444)
83 KOG1144|consensus 99.4 3.5E-14 7.7E-19 130.3 2.5 127 16-165 474-604 (1064)
84 TIGR00436 era GTP-binding prot 99.4 2.2E-13 4.7E-18 113.7 5.9 108 19-167 2-121 (270)
85 cd04160 Arfrp1 Arfrp1 subfamil 99.4 1.6E-13 3.4E-18 104.8 3.6 64 104-167 50-121 (167)
86 KOG0463|consensus 99.4 1.1E-13 2.3E-18 119.7 2.5 135 18-169 134-289 (641)
87 PRK00093 GTP-binding protein D 99.4 5E-13 1.1E-17 118.1 6.5 113 15-167 171-298 (435)
88 cd01894 EngA1 EngA1 subfamily. 99.4 2.3E-13 4.9E-18 102.2 3.7 64 104-168 45-120 (157)
89 PRK00089 era GTPase Era; Revie 99.4 6.4E-13 1.4E-17 111.6 6.5 62 104-166 53-126 (292)
90 TIGR03594 GTPase_EngA ribosome 99.4 4.2E-13 9E-18 118.2 4.7 109 19-167 1-121 (429)
91 COG2229 Predicted GTPase [Gene 99.4 9.8E-13 2.1E-17 103.5 5.9 117 15-168 8-136 (187)
92 PRK15494 era GTPase Era; Provi 99.4 6.3E-13 1.4E-17 114.6 5.3 114 14-167 49-174 (339)
93 TIGR03598 GTPase_YsxC ribosome 99.4 9.1E-13 2E-17 103.0 5.5 119 6-167 7-143 (179)
94 PRK15467 ethanolamine utilizat 99.4 7.4E-13 1.6E-17 102.2 4.8 97 19-167 3-105 (158)
95 TIGR03594 GTPase_EngA ribosome 99.3 5.4E-13 1.2E-17 117.4 3.7 111 16-166 171-296 (429)
96 cd01895 EngA2 EngA2 subfamily. 99.3 1.6E-12 3.5E-17 98.6 5.4 112 17-168 2-128 (174)
97 cd01898 Obg Obg subfamily. Th 99.3 9.7E-13 2.1E-17 100.6 3.8 83 19-140 2-91 (170)
98 cd01864 Rab19 Rab19 subfamily. 99.3 1.3E-12 2.9E-17 100.0 4.3 112 17-167 3-122 (165)
99 COG1160 Predicted GTPases [Gen 99.3 7.3E-13 1.6E-17 116.6 2.8 113 16-168 177-304 (444)
100 TIGR02528 EutP ethanolamine ut 99.3 2.1E-12 4.6E-17 96.5 5.0 96 19-167 2-102 (142)
101 PF02421 FeoB_N: Ferrous iron 99.3 8.1E-13 1.8E-17 102.5 1.9 111 18-168 1-120 (156)
102 PF10662 PduV-EutP: Ethanolami 99.3 3.6E-12 7.9E-17 97.4 5.4 95 18-166 2-102 (143)
103 cd04157 Arl6 Arl6 subfamily. 99.3 3.6E-12 7.8E-17 96.6 5.3 64 104-167 45-118 (162)
104 KOG1143|consensus 99.3 3.9E-13 8.6E-18 116.1 -0.1 134 18-168 168-318 (591)
105 cd04164 trmE TrmE (MnmE, ThdF, 99.3 1.8E-12 4E-17 97.1 3.3 111 18-168 2-122 (157)
106 smart00175 RAB Rab subfamily o 99.3 3E-12 6.5E-17 97.0 4.5 111 18-167 1-119 (164)
107 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.5E-12 9.7E-17 103.4 5.7 105 15-166 37-146 (225)
108 cd04145 M_R_Ras_like M-Ras/R-R 99.3 2.8E-12 6.1E-17 97.3 4.2 37 104-140 50-86 (164)
109 PRK00093 GTP-binding protein D 99.3 3.2E-12 6.9E-17 112.9 5.0 110 18-167 2-123 (435)
110 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 3.9E-12 8.4E-17 98.9 4.9 109 15-166 13-129 (174)
111 PRK03003 GTP-binding protein D 99.3 4.5E-12 9.8E-17 113.6 5.7 111 17-167 38-160 (472)
112 cd01861 Rab6 Rab6 subfamily. 99.3 3.8E-12 8.3E-17 96.5 4.5 110 19-166 2-118 (161)
113 KOG1423|consensus 99.3 1.1E-11 2.4E-16 104.8 7.0 121 14-174 69-206 (379)
114 cd00154 Rab Rab family. Rab G 99.3 1.8E-11 3.9E-16 91.2 7.1 111 18-166 1-118 (159)
115 cd04159 Arl10_like Arl10-like 99.2 6.3E-12 1.4E-16 93.8 4.4 64 104-167 44-115 (159)
116 TIGR00231 small_GTP small GTP- 99.2 1.8E-12 4E-17 95.8 1.4 111 18-167 2-122 (161)
117 cd01862 Rab7 Rab7 subfamily. 99.2 6.8E-12 1.5E-16 95.9 4.5 37 104-140 49-85 (172)
118 cd04105 SR_beta Signal recogni 99.2 7E-12 1.5E-16 100.6 4.6 37 104-140 48-85 (203)
119 cd04113 Rab4 Rab4 subfamily. 99.2 7.1E-12 1.5E-16 95.2 4.3 63 104-167 49-119 (161)
120 cd04114 Rab30 Rab30 subfamily. 99.2 7.7E-12 1.7E-16 95.6 4.4 114 15-167 5-126 (169)
121 PRK03003 GTP-binding protein D 99.2 1E-11 2.3E-16 111.3 5.5 112 16-167 210-336 (472)
122 cd01879 FeoB Ferrous iron tran 99.2 1.9E-12 4.1E-17 97.6 0.6 106 22-168 1-116 (158)
123 cd04154 Arl2 Arl2 subfamily. 99.2 8.4E-12 1.8E-16 96.6 4.1 109 15-166 12-128 (173)
124 cd04163 Era Era subfamily. Er 99.2 3.3E-11 7.2E-16 90.3 7.3 62 104-166 51-124 (168)
125 cd04161 Arl2l1_Arl13_like Arl2 99.2 1.3E-11 2.8E-16 95.5 4.8 64 104-167 43-114 (167)
126 smart00173 RAS Ras subfamily o 99.2 9.4E-12 2E-16 94.7 4.0 37 104-140 48-84 (164)
127 cd01860 Rab5_related Rab5-rela 99.2 1.3E-11 2.9E-16 93.6 4.8 111 18-166 2-119 (163)
128 PRK09518 bifunctional cytidyla 99.2 2.2E-11 4.8E-16 114.2 7.1 113 15-167 273-397 (712)
129 KOG0052|consensus 99.2 2.5E-12 5.4E-17 111.4 0.5 63 101-166 79-155 (391)
130 cd04124 RabL2 RabL2 subfamily. 99.2 1.5E-11 3.2E-16 94.2 4.6 62 104-166 49-117 (161)
131 cd01878 HflX HflX subfamily. 99.2 4.4E-11 9.6E-16 94.9 7.1 114 16-169 40-169 (204)
132 cd04149 Arf6 Arf6 subfamily. 99.2 2.3E-11 5E-16 94.3 5.2 108 16-166 8-123 (168)
133 PRK05291 trmE tRNA modificatio 99.2 1.4E-11 3E-16 110.0 4.2 112 16-167 214-335 (449)
134 PRK09554 feoB ferrous iron tra 99.2 1.2E-11 2.5E-16 116.7 3.9 111 17-167 3-126 (772)
135 PF01926 MMR_HSR1: 50S ribosom 99.2 4.2E-11 9.1E-16 87.1 6.0 83 19-140 1-92 (116)
136 cd04155 Arl3 Arl3 subfamily. 99.2 3.4E-11 7.4E-16 92.5 5.6 83 15-140 12-94 (173)
137 cd01866 Rab2 Rab2 subfamily. 99.2 2.2E-11 4.7E-16 93.8 4.5 112 17-166 4-122 (168)
138 smart00178 SAR Sar1p-like memb 99.2 3.6E-11 7.7E-16 94.5 5.5 109 15-166 15-131 (184)
139 PF09439 SRPRB: Signal recogni 99.2 7.7E-12 1.7E-16 99.2 1.6 63 104-167 49-126 (181)
140 PRK00454 engB GTP-binding prot 99.2 7.4E-11 1.6E-15 92.5 6.8 110 15-167 22-149 (196)
141 cd04156 ARLTS1 ARLTS1 subfamil 99.2 3.2E-11 6.9E-16 91.4 4.5 63 104-166 44-114 (160)
142 cd04115 Rab33B_Rab33A Rab33B/R 99.2 3.3E-11 7.1E-16 93.0 4.6 112 17-167 2-123 (170)
143 PRK04213 GTP-binding protein; 99.2 4.4E-11 9.5E-16 94.6 5.4 24 17-40 9-32 (201)
144 PRK09518 bifunctional cytidyla 99.2 3.8E-11 8.2E-16 112.6 5.8 112 16-167 449-575 (712)
145 cd04139 RalA_RalB RalA/RalB su 99.2 3.2E-11 6.9E-16 91.2 4.3 64 104-167 48-119 (164)
146 cd01867 Rab8_Rab10_Rab13_like 99.2 8.4E-11 1.8E-15 90.3 6.7 86 17-140 3-88 (167)
147 cd04137 RheB Rheb (Ras Homolog 99.1 4.6E-11 1E-15 92.6 5.1 62 104-166 49-119 (180)
148 cd00878 Arf_Arl Arf (ADP-ribos 99.1 4.9E-11 1.1E-15 90.3 5.1 106 19-167 1-114 (158)
149 cd04106 Rab23_lke Rab23-like s 99.1 8.1E-11 1.8E-15 89.2 6.1 112 19-167 2-120 (162)
150 TIGR03156 GTP_HflX GTP-binding 99.1 3.6E-11 7.8E-16 104.3 4.6 112 16-167 188-315 (351)
151 COG0486 ThdF Predicted GTPase 99.1 4.7E-11 1E-15 105.5 5.4 114 16-169 216-340 (454)
152 cd00879 Sar1 Sar1 subfamily. 99.1 1E-10 2.2E-15 91.5 6.5 109 15-166 17-133 (190)
153 cd04150 Arf1_5_like Arf1-Arf5- 99.1 5.2E-11 1.1E-15 91.3 4.7 64 104-167 44-115 (159)
154 cd04147 Ras_dva Ras-dva subfam 99.1 5.2E-11 1.1E-15 94.5 4.7 64 104-167 47-118 (198)
155 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 2.1E-10 4.6E-15 91.1 8.0 84 18-139 1-95 (196)
156 PRK14845 translation initiatio 99.1 3.3E-11 7.2E-16 116.2 3.9 119 21-166 469-591 (1049)
157 cd01868 Rab11_like Rab11-like. 99.1 4.8E-11 1E-15 91.0 3.9 85 18-140 4-88 (165)
158 smart00177 ARF ARF-like small 99.1 7.9E-11 1.7E-15 91.8 5.1 108 16-167 12-128 (175)
159 cd04123 Rab21 Rab21 subfamily. 99.1 7.7E-11 1.7E-15 88.8 4.9 64 104-167 49-119 (162)
160 PRK12298 obgE GTPase CgtA; Rev 99.1 5.6E-11 1.2E-15 104.4 4.7 82 18-138 160-248 (390)
161 cd04112 Rab26 Rab26 subfamily. 99.1 5.6E-11 1.2E-15 93.7 4.1 63 104-166 50-119 (191)
162 cd01897 NOG NOG1 is a nucleola 99.1 6E-11 1.3E-15 90.6 4.1 23 18-40 1-23 (168)
163 TIGR00450 mnmE_trmE_thdF tRNA 99.1 7.3E-11 1.6E-15 105.3 5.1 111 16-167 202-324 (442)
164 cd00880 Era_like Era (E. coli 99.1 4.5E-11 9.7E-16 88.3 3.1 63 104-167 45-118 (163)
165 PLN00223 ADP-ribosylation fact 99.1 8.4E-11 1.8E-15 92.4 4.8 110 15-167 15-132 (181)
166 cd04119 RJL RJL (RabJ-Like) su 99.1 4.2E-10 9.1E-15 85.2 8.5 85 18-140 1-85 (168)
167 cd01865 Rab3 Rab3 subfamily. 99.1 8.4E-11 1.8E-15 90.1 4.2 64 104-167 50-120 (165)
168 PRK11058 GTPase HflX; Provisio 99.1 5.8E-11 1.3E-15 105.4 3.6 110 18-167 198-323 (426)
169 COG0218 Predicted GTPase [Gene 99.1 1.5E-10 3.4E-15 92.6 5.2 113 12-167 19-149 (200)
170 cd04110 Rab35 Rab35 subfamily. 99.1 1.1E-10 2.3E-15 92.9 4.1 113 17-167 6-124 (199)
171 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 5.8E-10 1.3E-14 85.2 7.9 86 17-140 2-87 (166)
172 cd04151 Arl1 Arl1 subfamily. 99.1 7.8E-10 1.7E-14 84.1 8.5 64 104-167 43-114 (158)
173 cd00882 Ras_like_GTPase Ras-li 99.1 1.3E-10 2.7E-15 84.6 3.7 63 104-167 45-116 (157)
174 cd01893 Miro1 Miro1 subfamily. 99.0 8E-10 1.7E-14 84.9 8.0 63 104-167 47-117 (166)
175 cd04146 RERG_RasL11_like RERG/ 99.0 1.7E-10 3.6E-15 88.2 4.0 37 104-140 47-84 (165)
176 cd00877 Ran Ran (Ras-related n 99.0 2.2E-10 4.8E-15 88.4 3.6 62 104-166 49-117 (166)
177 cd00876 Ras Ras family. The R 99.0 2.1E-09 4.5E-14 80.7 8.7 64 104-167 47-118 (160)
178 COG1084 Predicted GTPase [Gene 99.0 2.5E-10 5.4E-15 97.3 3.7 109 17-167 168-294 (346)
179 PRK12299 obgE GTPase CgtA; Rev 99.0 4.1E-10 8.9E-15 97.2 5.1 86 16-140 157-249 (335)
180 PLN03118 Rab family protein; P 99.0 1.6E-09 3.5E-14 86.8 8.1 86 16-140 13-98 (211)
181 cd01863 Rab18 Rab18 subfamily. 99.0 1.7E-09 3.7E-14 81.9 7.6 37 104-140 49-85 (161)
182 cd04125 RabA_like RabA-like su 99.0 4.4E-10 9.6E-15 88.1 4.4 37 104-140 49-85 (188)
183 cd01881 Obg_like The Obg-like 99.0 8.4E-10 1.8E-14 84.4 5.5 37 104-140 44-87 (176)
184 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2.7E-09 5.9E-14 80.2 8.2 37 104-140 49-85 (162)
185 PTZ00369 Ras-like protein; Pro 99.0 1.7E-09 3.6E-14 85.2 7.3 86 16-140 4-89 (189)
186 PF08477 Miro: Miro-like prote 99.0 1.6E-10 3.5E-15 83.7 1.3 37 104-140 50-86 (119)
187 cd04122 Rab14 Rab14 subfamily. 99.0 4E-09 8.7E-14 80.7 9.2 85 18-140 3-87 (166)
188 cd04158 ARD1 ARD1 subfamily. 99.0 2.4E-09 5.2E-14 82.6 7.7 79 19-140 1-79 (169)
189 cd04126 Rab20 Rab20 subfamily. 99.0 1.4E-09 3.1E-14 88.6 6.5 60 104-167 44-114 (220)
190 cd04136 Rap_like Rap-like subf 99.0 3.7E-09 7.9E-14 80.0 8.3 37 104-140 49-85 (163)
191 smart00174 RHO Rho (Ras homolo 99.0 5.7E-10 1.2E-14 85.7 3.9 37 104-140 46-82 (174)
192 cd04140 ARHI_like ARHI subfami 98.9 3.4E-09 7.4E-14 81.1 8.0 37 104-140 49-85 (165)
193 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 3E-09 6.6E-14 82.0 7.7 64 104-167 44-113 (164)
194 cd04116 Rab9 Rab9 subfamily. 98.9 4.2E-09 9E-14 80.7 8.2 87 16-140 4-90 (170)
195 cd01876 YihA_EngB The YihA (En 98.9 1.1E-09 2.4E-14 82.2 5.0 20 20-39 2-21 (170)
196 PLN03110 Rab GTPase; Provision 98.9 1E-09 2.3E-14 88.6 4.7 87 16-140 11-97 (216)
197 cd04142 RRP22 RRP22 subfamily. 98.9 1E-09 2.2E-14 87.7 4.6 63 104-167 49-130 (198)
198 PTZ00133 ADP-ribosylation fact 98.9 5.6E-09 1.2E-13 82.0 8.8 82 16-140 16-97 (182)
199 cd04132 Rho4_like Rho4-like su 98.9 5.3E-09 1.2E-13 81.6 8.4 85 18-140 1-85 (187)
200 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 4.8E-09 1E-13 82.2 8.0 63 104-166 52-122 (183)
201 cd00157 Rho Rho (Ras homology) 98.9 3.2E-09 6.9E-14 81.0 6.8 64 104-167 48-118 (171)
202 PF00025 Arf: ADP-ribosylation 98.9 1.1E-09 2.5E-14 85.6 4.3 112 13-167 10-129 (175)
203 cd04175 Rap1 Rap1 subgroup. T 98.9 5.9E-09 1.3E-13 79.4 8.1 37 104-140 49-85 (164)
204 cd04101 RabL4 RabL4 (Rab-like4 98.9 8.6E-09 1.9E-13 78.3 8.9 64 104-167 52-121 (164)
205 cd04177 RSR1 RSR1 subgroup. R 98.9 5.8E-09 1.3E-13 80.1 8.0 37 104-140 49-85 (168)
206 cd01850 CDC_Septin CDC/Septin. 98.9 1.6E-09 3.6E-14 91.0 5.3 25 17-41 4-28 (276)
207 cd04144 Ras2 Ras2 subfamily. 98.9 8.5E-09 1.9E-13 81.2 8.8 37 104-140 47-83 (190)
208 COG5192 BMS1 GTP-binding prote 98.9 2E-09 4.3E-14 97.4 5.7 90 16-152 68-157 (1077)
209 cd01892 Miro2 Miro2 subfamily. 98.9 8.2E-10 1.8E-14 85.5 2.7 116 15-167 2-122 (169)
210 PRK09866 hypothetical protein; 98.9 2.1E-09 4.5E-14 99.0 5.6 64 103-167 229-303 (741)
211 cd04176 Rap2 Rap2 subgroup. T 98.9 6.1E-09 1.3E-13 79.1 7.3 37 104-140 49-85 (163)
212 cd04135 Tc10 TC10 subfamily. 98.9 4.7E-09 1E-13 80.6 6.6 37 104-140 48-84 (174)
213 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 8.2E-09 1.8E-13 82.0 8.0 85 19-140 2-86 (201)
214 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 9.1E-09 2E-13 79.8 8.0 84 19-140 2-85 (170)
215 PRK12296 obgE GTPase CgtA; Rev 98.9 2.8E-09 6.1E-14 96.2 5.5 83 17-139 159-248 (500)
216 KOG1191|consensus 98.8 3.8E-09 8.2E-14 94.0 5.5 87 15-140 266-361 (531)
217 cd04127 Rab27A Rab27a subfamil 98.8 1.5E-08 3.3E-13 78.3 8.2 37 104-140 63-99 (180)
218 PLN03108 Rab family protein; P 98.8 1.3E-08 2.7E-13 81.8 7.9 115 15-167 4-125 (210)
219 cd04109 Rab28 Rab28 subfamily. 98.8 1.6E-08 3.4E-13 81.4 8.3 85 19-140 2-86 (215)
220 cd04118 Rab24 Rab24 subfamily. 98.8 1.3E-08 2.8E-13 79.8 7.2 64 104-167 50-119 (193)
221 cd01896 DRG The developmentall 98.8 1.7E-08 3.6E-13 82.8 7.6 82 19-140 2-90 (233)
222 cd01870 RhoA_like RhoA-like su 98.8 2.1E-08 4.6E-13 77.0 7.7 37 104-140 49-85 (175)
223 TIGR00437 feoB ferrous iron tr 98.8 3.2E-09 6.8E-14 97.9 3.5 104 24-167 1-113 (591)
224 cd04111 Rab39 Rab39 subfamily. 98.8 2.7E-08 5.8E-13 80.1 8.1 86 18-140 3-88 (211)
225 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 4.1E-08 9E-13 76.2 8.9 64 104-167 50-121 (172)
226 cd01871 Rac1_like Rac1-like su 98.8 3.7E-08 7.9E-13 76.8 8.3 37 104-140 49-85 (174)
227 cd01874 Cdc42 Cdc42 subfamily. 98.8 3.1E-08 6.8E-13 77.2 7.8 64 104-167 49-119 (175)
228 cd01900 YchF YchF subfamily. 98.8 2.3E-08 5E-13 84.1 7.4 97 20-139 1-104 (274)
229 COG4917 EutP Ethanolamine util 98.8 1.7E-08 3.8E-13 75.4 5.7 101 19-174 3-112 (148)
230 PTZ00258 GTP-binding protein; 98.7 3.3E-08 7.2E-13 86.9 8.3 101 16-139 20-127 (390)
231 cd04104 p47_IIGP_like p47 (47- 98.7 6.7E-09 1.5E-13 82.7 3.5 23 18-40 2-24 (197)
232 COG2262 HflX GTPases [General 98.7 6.5E-09 1.4E-13 90.9 3.6 113 15-167 190-318 (411)
233 PLN03071 GTP-binding nuclear p 98.7 4.2E-08 9.1E-13 79.5 8.0 115 15-167 11-131 (219)
234 cd04120 Rab12 Rab12 subfamily. 98.7 4.4E-08 9.6E-13 78.7 7.9 84 19-140 2-85 (202)
235 TIGR02729 Obg_CgtA Obg family 98.7 1.5E-08 3.3E-13 87.2 5.4 86 16-140 156-248 (329)
236 cd04130 Wrch_1 Wrch-1 subfamil 98.7 3.8E-08 8.3E-13 76.0 7.1 64 104-167 48-118 (173)
237 cd01853 Toc34_like Toc34-like 98.7 5.4E-08 1.2E-12 80.8 7.8 26 15-40 29-54 (249)
238 PF00350 Dynamin_N: Dynamin fa 98.7 1.5E-08 3.4E-13 77.6 4.1 37 104-140 101-141 (168)
239 cd01875 RhoG RhoG subfamily. 98.7 9.6E-08 2.1E-12 75.5 8.6 112 17-167 3-121 (191)
240 cd04121 Rab40 Rab40 subfamily. 98.7 8.9E-08 1.9E-12 76.1 8.2 114 16-167 5-124 (189)
241 PRK09601 GTP-binding protein Y 98.7 7.8E-08 1.7E-12 83.8 8.5 99 18-139 3-108 (364)
242 cd04117 Rab15 Rab15 subfamily. 98.7 9.1E-08 2E-12 73.2 7.9 37 104-140 49-85 (161)
243 cd04143 Rhes_like Rhes_like su 98.7 9.3E-08 2E-12 79.1 8.4 37 104-140 48-84 (247)
244 PTZ00132 GTP-binding nuclear p 98.7 1.3E-07 2.9E-12 75.7 8.9 90 12-140 4-94 (215)
245 PF04548 AIG1: AIG1 family; I 98.7 9.6E-08 2.1E-12 77.1 7.9 24 18-41 1-24 (212)
246 cd04134 Rho3 Rho3 subfamily. 98.6 8.9E-08 1.9E-12 75.4 7.3 64 104-167 48-118 (189)
247 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 2.3E-07 4.9E-12 73.2 8.7 86 16-140 4-89 (182)
248 COG3596 Predicted GTPase [Gene 98.6 6.4E-08 1.4E-12 81.0 5.8 100 14-153 36-142 (296)
249 cd04131 Rnd Rnd subfamily. Th 98.6 1.8E-07 3.8E-12 73.4 7.7 84 18-140 2-85 (178)
250 cd04128 Spg1 Spg1p. Spg1p (se 98.6 1.8E-07 3.8E-12 73.6 7.7 37 104-140 49-85 (182)
251 cd04102 RabL3 RabL3 (Rab-like3 98.6 5.3E-08 1.1E-12 78.4 4.7 37 104-140 54-90 (202)
252 KOG0073|consensus 98.6 4.3E-08 9.4E-13 76.2 3.8 107 17-166 16-130 (185)
253 PRK12297 obgE GTPase CgtA; Rev 98.6 1.7E-07 3.6E-12 83.4 8.0 83 18-139 159-248 (424)
254 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 3.4E-07 7.4E-12 74.7 8.8 37 104-140 49-85 (222)
255 cd01858 NGP_1 NGP-1. Autoanti 98.6 8.9E-08 1.9E-12 73.4 5.0 24 17-40 102-125 (157)
256 cd04133 Rop_like Rop subfamily 98.6 1.9E-07 4E-12 73.4 6.9 111 18-167 2-119 (176)
257 PF03193 DUF258: Protein of un 98.5 7.6E-08 1.6E-12 75.0 4.3 23 18-40 36-58 (161)
258 PF00071 Ras: Ras family; Int 98.5 2.9E-07 6.3E-12 69.7 6.7 37 104-140 48-84 (162)
259 COG0370 FeoB Fe2+ transport sy 98.5 9.1E-08 2E-12 88.2 4.1 108 18-168 4-123 (653)
260 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.5 6E-07 1.3E-11 73.8 8.6 85 17-140 13-97 (232)
261 TIGR00991 3a0901s02IAP34 GTP-b 98.5 4.4E-07 9.4E-12 77.6 7.9 26 16-41 37-62 (313)
262 cd04148 RGK RGK subfamily. Th 98.5 5.3E-07 1.2E-11 73.1 8.1 35 104-140 50-85 (221)
263 COG1100 GTPase SAR1 and relate 98.5 6.2E-07 1.4E-11 71.4 7.9 113 18-168 6-126 (219)
264 PRK09602 translation-associate 98.5 5E-07 1.1E-11 79.7 7.9 36 104-139 72-114 (396)
265 smart00176 RAN Ran (Ras-relate 98.5 2E-07 4.4E-12 74.8 5.0 62 104-166 44-112 (200)
266 smart00053 DYNc Dynamin, GTPas 98.5 2.6E-07 5.6E-12 76.4 5.7 63 104-167 125-206 (240)
267 cd04178 Nucleostemin_like Nucl 98.4 2.5E-07 5.3E-12 72.7 4.8 24 18-41 118-141 (172)
268 cd04129 Rho2 Rho2 subfamily. 98.4 7.1E-07 1.5E-11 70.0 7.4 64 104-167 49-119 (187)
269 cd01899 Ygr210 Ygr210 subfamil 98.4 8.5E-07 1.8E-11 76.2 7.4 36 104-139 69-111 (318)
270 cd01855 YqeH YqeH. YqeH is an 98.4 3.5E-07 7.6E-12 72.1 4.4 23 18-40 128-150 (190)
271 KOG0090|consensus 98.4 4.7E-07 1E-11 73.3 5.0 37 104-140 82-121 (238)
272 KOG1489|consensus 98.4 8E-07 1.7E-11 75.8 6.3 23 17-39 196-218 (366)
273 cd01849 YlqF_related_GTPase Yl 98.3 5.7E-07 1.2E-11 68.8 4.4 25 16-40 99-123 (155)
274 KOG0080|consensus 98.3 9.3E-07 2E-11 68.9 5.5 111 17-167 11-131 (209)
275 PF00735 Septin: Septin; Inte 98.3 8.5E-07 1.8E-11 74.9 5.4 25 17-41 4-28 (281)
276 COG1163 DRG Predicted GTPase [ 98.3 8E-07 1.7E-11 76.0 5.2 83 18-140 64-153 (365)
277 KOG0394|consensus 98.3 6.4E-07 1.4E-11 71.1 4.0 115 15-167 7-132 (210)
278 cd01851 GBP Guanylate-binding 98.3 1.4E-06 3.1E-11 71.1 5.9 26 15-40 5-30 (224)
279 KOG0094|consensus 98.3 1.3E-06 2.8E-11 69.9 5.1 119 18-174 23-149 (221)
280 PLN00023 GTP-binding protein; 98.3 3.3E-06 7.1E-11 72.8 7.9 37 104-140 83-119 (334)
281 KOG0098|consensus 98.2 1.3E-06 2.9E-11 69.4 4.4 112 16-167 5-125 (216)
282 TIGR02836 spore_IV_A stage IV 98.2 1.1E-06 2.3E-11 77.9 4.1 23 18-40 18-40 (492)
283 PRK09435 membrane ATPase/prote 98.2 1.7E-06 3.8E-11 74.7 5.2 60 103-167 148-208 (332)
284 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 1.6E-06 3.5E-11 65.3 4.3 22 19-40 85-106 (141)
285 TIGR00993 3a0901s04IAP86 chlor 98.2 4.5E-06 9.7E-11 77.6 7.8 23 18-40 119-141 (763)
286 KOG0075|consensus 98.2 6.8E-07 1.5E-11 68.7 1.8 63 104-167 65-136 (186)
287 PRK12288 GTPase RsgA; Reviewed 98.2 1.4E-06 3E-11 75.7 4.0 23 19-41 207-229 (347)
288 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 1.7E-06 3.6E-11 71.3 4.2 84 19-140 1-89 (232)
289 PRK09563 rbgA GTPase YlqF; Rev 98.2 2.8E-06 6.1E-11 71.7 5.3 25 16-40 120-144 (287)
290 PF03029 ATP_bind_1: Conserved 98.1 3.4E-06 7.4E-11 69.6 5.4 61 104-167 91-170 (238)
291 COG1162 Predicted GTPases [Gen 98.1 1.5E-06 3.3E-11 73.8 3.3 24 18-41 165-188 (301)
292 TIGR03596 GTPase_YlqF ribosome 98.1 2.9E-06 6.4E-11 71.2 4.9 25 16-40 117-141 (276)
293 KOG0076|consensus 98.1 2.2E-06 4.9E-11 67.4 3.5 122 11-167 11-140 (197)
294 KOG0084|consensus 98.1 3.5E-06 7.7E-11 67.3 4.3 117 16-170 8-131 (205)
295 TIGR00157 ribosome small subun 98.1 1.9E-06 4.1E-11 71.3 2.8 23 18-40 121-143 (245)
296 COG1161 Predicted GTPases [Gen 98.1 3E-06 6.5E-11 72.9 4.0 25 17-41 132-156 (322)
297 KOG0074|consensus 98.1 2.8E-06 6.2E-11 65.0 3.3 109 16-166 16-132 (185)
298 KOG0092|consensus 98.1 1.7E-06 3.6E-11 68.9 2.0 113 16-167 4-124 (200)
299 cd04103 Centaurin_gamma Centau 98.1 1.7E-05 3.8E-10 60.8 7.3 32 104-140 47-78 (158)
300 PRK13768 GTPase; Provisional 98.0 6.3E-06 1.4E-10 68.5 4.7 64 104-168 97-177 (253)
301 KOG0078|consensus 98.0 1.7E-05 3.6E-10 64.0 6.8 110 16-167 11-131 (207)
302 PRK12289 GTPase RsgA; Reviewed 98.0 4.9E-06 1.1E-10 72.4 3.8 22 19-40 174-195 (352)
303 cd01854 YjeQ_engC YjeQ/EngC. 98.0 4E-06 8.8E-11 70.8 3.0 24 18-41 162-185 (287)
304 TIGR03597 GTPase_YqeH ribosome 98.0 6.9E-06 1.5E-10 71.6 4.3 23 18-40 155-177 (360)
305 KOG0070|consensus 98.0 1.2E-06 2.6E-11 69.2 -0.6 65 103-167 60-132 (181)
306 KOG0410|consensus 97.9 4.5E-05 9.8E-10 65.6 8.2 84 16-140 177-270 (410)
307 PRK13796 GTPase YqeH; Provisio 97.9 1E-05 2.3E-10 70.6 4.1 24 17-40 160-183 (365)
308 TIGR00750 lao LAO/AO transport 97.9 4.2E-05 9.1E-10 65.0 7.7 61 103-168 126-187 (300)
309 cd01856 YlqF YlqF. Proteins o 97.9 1.7E-05 3.7E-10 61.6 4.9 23 18-40 116-138 (171)
310 cd01873 RhoBTB RhoBTB subfamil 97.9 4.4E-05 9.5E-10 60.8 7.3 35 104-140 66-100 (195)
311 PF05049 IIGP: Interferon-indu 97.9 1.8E-05 3.9E-10 69.4 5.3 25 16-40 34-58 (376)
312 cd03114 ArgK-like The function 97.9 4.2E-05 9.1E-10 58.6 6.3 35 103-140 91-125 (148)
313 KOG0095|consensus 97.9 1.9E-05 4.1E-10 61.0 4.3 116 15-168 5-127 (213)
314 COG5019 CDC3 Septin family pro 97.9 1.1E-05 2.4E-10 70.0 3.3 27 14-40 20-46 (373)
315 KOG1954|consensus 97.8 1.4E-05 3E-10 69.8 3.7 68 104-171 147-229 (532)
316 PF03308 ArgK: ArgK protein; 97.8 4.9E-05 1.1E-09 63.5 6.9 61 103-170 121-184 (266)
317 PRK00098 GTPase RsgA; Reviewed 97.8 1.3E-05 2.7E-10 68.2 3.3 25 17-41 164-188 (298)
318 PRK10416 signal recognition pa 97.8 2.2E-06 4.9E-11 73.5 -1.5 24 16-39 113-136 (318)
319 TIGR00092 GTP-binding protein 97.8 4.2E-05 9E-10 66.9 6.3 37 104-140 67-110 (368)
320 KOG0077|consensus 97.8 4.2E-05 9.2E-10 59.9 5.5 64 104-167 64-135 (193)
321 KOG0395|consensus 97.8 9.7E-06 2.1E-10 65.0 1.7 64 104-167 51-122 (196)
322 KOG1547|consensus 97.8 1.1E-05 2.4E-10 66.8 2.1 28 12-39 41-68 (336)
323 COG0012 Predicted GTPase, prob 97.7 4.1E-05 8.8E-10 66.7 5.0 37 104-140 67-110 (372)
324 KOG1532|consensus 97.7 8.1E-05 1.8E-09 62.8 6.6 24 16-39 18-41 (366)
325 KOG2486|consensus 97.7 4.2E-05 9.1E-10 64.4 4.9 111 16-167 135-262 (320)
326 cd01859 MJ1464 MJ1464. This f 97.7 4.9E-05 1.1E-09 57.8 4.9 24 17-40 101-124 (156)
327 KOG0087|consensus 97.7 1.6E-05 3.5E-10 64.2 1.7 112 18-167 15-133 (222)
328 TIGR01425 SRP54_euk signal rec 97.7 7.3E-05 1.6E-09 66.7 5.7 37 104-140 183-225 (429)
329 PRK14722 flhF flagellar biosyn 97.6 0.00017 3.8E-09 63.3 7.2 23 17-39 137-159 (374)
330 KOG0093|consensus 97.6 0.00011 2.5E-09 56.6 5.0 114 19-170 23-143 (193)
331 KOG1486|consensus 97.6 6.5E-05 1.4E-09 62.8 3.8 84 18-141 63-153 (364)
332 TIGR00064 ftsY signal recognit 97.6 3.6E-05 7.8E-10 64.7 2.0 24 15-38 70-93 (272)
333 cd03112 CobW_like The function 97.6 0.00012 2.6E-09 56.5 4.7 37 104-140 87-131 (158)
334 KOG2655|consensus 97.5 6E-05 1.3E-09 65.6 3.1 28 13-40 17-44 (366)
335 KOG1424|consensus 97.5 0.00011 2.3E-09 66.4 3.7 25 16-40 313-337 (562)
336 PRK14974 cell division protein 97.5 4E-05 8.8E-10 66.3 0.9 37 104-140 223-265 (336)
337 KOG0086|consensus 97.4 0.00061 1.3E-08 53.0 6.5 84 17-139 9-93 (214)
338 KOG0079|consensus 97.3 0.00025 5.3E-09 54.9 4.0 38 104-141 57-94 (198)
339 COG0536 Obg Predicted GTPase [ 97.3 0.00049 1.1E-08 59.5 6.0 21 19-39 161-181 (369)
340 PF00448 SRP54: SRP54-type pro 97.3 2.1E-05 4.6E-10 63.0 -2.3 21 18-38 2-22 (196)
341 PRK00771 signal recognition pa 97.3 0.00037 8.1E-09 62.4 5.3 37 104-140 176-218 (437)
342 COG1763 MobB Molybdopterin-gua 97.3 0.00015 3.4E-09 56.5 2.4 33 18-57 3-35 (161)
343 PF13555 AAA_29: P-loop contai 97.3 0.0004 8.7E-09 45.8 3.9 20 19-38 25-44 (62)
344 cd03115 SRP The signal recogni 97.3 0.00078 1.7E-08 52.1 6.2 37 104-140 83-125 (173)
345 KOG2423|consensus 97.2 0.00018 3.8E-09 63.5 2.5 26 14-39 304-329 (572)
346 PRK11889 flhF flagellar biosyn 97.2 0.00035 7.5E-09 62.0 4.4 22 17-38 241-262 (436)
347 KOG2485|consensus 97.1 0.00051 1.1E-08 58.7 4.2 43 16-58 142-187 (335)
348 PRK01889 GTPase RsgA; Reviewed 97.1 0.00025 5.5E-09 61.8 2.4 23 18-40 196-218 (356)
349 TIGR00235 udk uridine kinase. 97.1 0.00035 7.5E-09 55.9 3.0 27 13-39 2-28 (207)
350 COG1116 TauB ABC-type nitrate/ 97.1 0.00034 7.3E-09 58.0 2.9 23 19-41 31-53 (248)
351 KOG4181|consensus 97.1 0.00084 1.8E-08 58.4 5.3 26 18-43 189-214 (491)
352 KOG0088|consensus 97.1 0.00022 4.8E-09 55.7 1.4 68 104-171 62-136 (218)
353 KOG0071|consensus 97.1 0.00068 1.5E-08 52.0 3.7 64 104-167 61-132 (180)
354 COG1126 GlnQ ABC-type polar am 97.0 0.00043 9.2E-09 56.6 2.7 23 17-39 28-50 (240)
355 KOG1491|consensus 97.0 0.0015 3.3E-08 56.5 6.0 37 104-140 84-127 (391)
356 PRK10867 signal recognition pa 97.0 0.00049 1.1E-08 61.6 3.0 24 15-38 98-121 (433)
357 KOG1707|consensus 97.0 0.00081 1.8E-08 61.6 4.3 112 16-167 8-129 (625)
358 COG1136 SalX ABC-type antimicr 97.0 0.00054 1.2E-08 56.2 2.9 21 19-39 33-53 (226)
359 PRK10751 molybdopterin-guanine 97.0 0.00065 1.4E-08 53.6 3.2 27 13-39 2-28 (173)
360 TIGR00959 ffh signal recogniti 97.0 0.00027 5.8E-09 63.1 0.9 23 16-38 98-120 (428)
361 COG1703 ArgK Putative periplas 96.9 0.0036 7.8E-08 53.4 7.3 23 17-39 51-73 (323)
362 PF00005 ABC_tran: ABC transpo 96.9 0.00075 1.6E-08 49.8 2.9 25 17-41 11-35 (137)
363 PF13207 AAA_17: AAA domain; P 96.9 0.00077 1.7E-08 48.7 2.5 21 19-39 1-21 (121)
364 PRK12724 flagellar biosynthesi 96.8 0.00048 1E-08 61.4 1.6 23 17-39 223-245 (432)
365 KOG2484|consensus 96.8 0.00093 2E-08 58.8 3.3 24 15-38 250-273 (435)
366 TIGR00073 hypB hydrogenase acc 96.8 0.00058 1.3E-08 54.7 1.7 28 12-39 17-44 (207)
367 PRK12726 flagellar biosynthesi 96.8 0.0029 6.2E-08 55.9 5.9 23 16-38 205-227 (407)
368 PRK05480 uridine/cytidine kina 96.8 0.0013 2.8E-08 52.5 3.4 25 16-40 5-29 (209)
369 KOG0083|consensus 96.7 0.0006 1.3E-08 51.9 1.1 64 104-167 47-117 (192)
370 cd03264 ABC_drug_resistance_li 96.7 0.0014 3.1E-08 52.2 3.3 23 19-41 27-49 (211)
371 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0013 2.8E-08 52.4 2.9 26 16-41 26-51 (211)
372 TIGR01166 cbiO cobalt transpor 96.7 0.0014 2.9E-08 51.6 2.9 25 17-41 18-42 (190)
373 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0013 2.9E-08 52.6 2.9 25 17-41 30-54 (218)
374 COG3840 ThiQ ABC-type thiamine 96.7 0.0012 2.7E-08 52.9 2.6 23 18-40 26-48 (231)
375 cd03261 ABC_Org_Solvent_Resist 96.7 0.0013 2.9E-08 53.3 2.9 25 17-41 26-50 (235)
376 PRK14489 putative bifunctional 96.7 0.0013 2.8E-08 57.5 3.0 23 17-39 205-227 (366)
377 TIGR00960 3a0501s02 Type II (G 96.7 0.0014 3.1E-08 52.4 2.9 25 17-41 29-53 (216)
378 COG1117 PstB ABC-type phosphat 96.6 0.0017 3.6E-08 53.2 3.2 28 12-39 28-55 (253)
379 COG1120 FepC ABC-type cobalami 96.6 0.0014 3.1E-08 54.8 2.9 24 18-41 29-52 (258)
380 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0014 3.1E-08 51.7 2.7 26 16-41 24-49 (177)
381 TIGR02673 FtsE cell division A 96.6 0.0015 3.3E-08 52.1 2.9 25 17-41 28-52 (214)
382 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0015 3.3E-08 51.9 2.9 26 16-41 25-50 (205)
383 cd01130 VirB11-like_ATPase Typ 96.6 0.0016 3.6E-08 51.2 3.0 26 16-41 24-49 (186)
384 cd03259 ABC_Carb_Solutes_like 96.6 0.0016 3.4E-08 52.1 2.9 24 18-41 27-50 (213)
385 PRK08233 hypothetical protein; 96.6 0.0018 4E-08 49.9 3.2 24 17-40 3-26 (182)
386 cd03224 ABC_TM1139_LivF_branch 96.6 0.0016 3.4E-08 52.2 2.9 26 16-41 25-50 (222)
387 cd03265 ABC_DrrA DrrA is the A 96.6 0.0017 3.6E-08 52.2 2.9 25 17-41 26-50 (220)
388 COG3638 ABC-type phosphate/pho 96.6 0.0016 3.5E-08 53.9 2.8 22 19-40 32-53 (258)
389 TIGR03608 L_ocin_972_ABC putat 96.6 0.0017 3.7E-08 51.4 2.9 24 18-41 25-48 (206)
390 cd03262 ABC_HisP_GlnQ_permease 96.6 0.002 4.4E-08 51.3 3.3 26 16-41 25-50 (213)
391 cd03219 ABC_Mj1267_LivG_branch 96.6 0.0016 3.5E-08 52.7 2.8 25 17-41 26-50 (236)
392 KOG1490|consensus 96.6 0.0014 3.1E-08 59.3 2.6 23 17-39 168-190 (620)
393 cd03292 ABC_FtsE_transporter F 96.6 0.002 4.4E-08 51.3 3.3 26 16-41 26-51 (214)
394 cd03269 ABC_putative_ATPase Th 96.6 0.0018 3.9E-08 51.6 2.9 26 16-41 25-50 (210)
395 PRK07261 topology modulation p 96.6 0.0018 3.9E-08 50.5 2.8 21 19-39 2-22 (171)
396 cd03229 ABC_Class3 This class 96.6 0.0019 4.1E-08 50.3 3.0 25 17-41 26-50 (178)
397 PRK15177 Vi polysaccharide exp 96.5 0.0019 4E-08 52.1 2.9 25 17-41 13-37 (213)
398 cd03258 ABC_MetN_methionine_tr 96.5 0.0019 4.1E-08 52.3 2.9 26 16-41 30-55 (233)
399 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0019 4.1E-08 51.9 2.9 24 18-41 31-54 (220)
400 cd03218 ABC_YhbG The ABC trans 96.5 0.0019 4.1E-08 52.2 2.9 26 16-41 25-50 (232)
401 cd03235 ABC_Metallic_Cations A 96.5 0.0018 4E-08 51.7 2.8 25 17-41 25-49 (213)
402 cd03263 ABC_subfamily_A The AB 96.5 0.0022 4.8E-08 51.4 3.3 26 16-41 27-52 (220)
403 TIGR01189 ccmA heme ABC export 96.5 0.002 4.3E-08 51.0 3.0 26 16-41 25-50 (198)
404 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0022 4.9E-08 51.4 3.3 26 16-41 30-55 (221)
405 cd02019 NK Nucleoside/nucleoti 96.5 0.0023 5E-08 42.5 2.8 21 19-39 1-21 (69)
406 KOG4252|consensus 96.5 0.00064 1.4E-08 54.2 0.1 111 17-170 20-141 (246)
407 TIGR02315 ABC_phnC phosphonate 96.5 0.0019 4.2E-08 52.5 2.9 25 17-41 28-52 (243)
408 cd03257 ABC_NikE_OppD_transpor 96.5 0.002 4.2E-08 51.8 2.9 25 17-41 31-55 (228)
409 cd03260 ABC_PstB_phosphate_tra 96.5 0.0019 4.2E-08 52.0 2.8 25 17-41 26-50 (227)
410 cd03238 ABC_UvrA The excision 96.5 0.0024 5.2E-08 50.3 3.2 25 15-39 19-43 (176)
411 cd03301 ABC_MalK_N The N-termi 96.5 0.0021 4.5E-08 51.3 2.9 26 16-41 25-50 (213)
412 cd03297 ABC_ModC_molybdenum_tr 96.5 0.0021 4.6E-08 51.4 2.9 24 18-41 24-47 (214)
413 PRK08118 topology modulation p 96.5 0.0021 4.7E-08 50.0 2.9 20 19-38 3-22 (167)
414 PRK11629 lolD lipoprotein tran 96.5 0.0021 4.5E-08 52.2 2.9 25 17-41 35-59 (233)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0022 4.7E-08 48.6 2.8 25 17-41 26-50 (144)
416 TIGR01978 sufC FeS assembly AT 96.5 0.0021 4.5E-08 52.3 2.9 24 17-40 26-49 (243)
417 cd03216 ABC_Carb_Monos_I This 96.5 0.0023 4.9E-08 49.4 3.0 26 16-41 25-50 (163)
418 PF03205 MobB: Molybdopterin g 96.5 0.002 4.4E-08 48.8 2.6 21 19-39 2-22 (140)
419 cd03266 ABC_NatA_sodium_export 96.5 0.0022 4.7E-08 51.3 2.9 26 16-41 30-55 (218)
420 TIGR03410 urea_trans_UrtE urea 96.5 0.0021 4.6E-08 51.9 2.9 26 16-41 25-50 (230)
421 cd03256 ABC_PhnC_transporter A 96.5 0.0022 4.7E-08 52.1 2.9 25 17-41 27-51 (241)
422 COG0563 Adk Adenylate kinase a 96.5 0.0022 4.7E-08 50.7 2.8 21 19-39 2-22 (178)
423 PRK11124 artP arginine transpo 96.5 0.0022 4.8E-08 52.2 2.9 26 16-41 27-52 (242)
424 PRK05703 flhF flagellar biosyn 96.5 0.012 2.6E-07 52.6 7.8 23 17-39 221-243 (424)
425 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0023 4.9E-08 52.1 3.0 26 16-41 26-51 (236)
426 cd03254 ABCC_Glucan_exporter_l 96.5 0.0022 4.8E-08 51.7 2.9 24 18-41 30-53 (229)
427 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0022 4.8E-08 53.5 2.9 23 19-41 32-54 (254)
428 TIGR02770 nickel_nikD nickel i 96.5 0.0022 4.8E-08 52.0 2.9 26 17-42 12-37 (230)
429 cd03215 ABC_Carb_Monos_II This 96.5 0.0023 5.1E-08 50.0 2.9 25 17-41 26-50 (182)
430 PRK06731 flhF flagellar biosyn 96.5 0.0019 4.1E-08 54.4 2.5 24 16-39 74-97 (270)
431 PRK14723 flhF flagellar biosyn 96.5 0.0082 1.8E-07 57.2 6.9 23 17-39 185-207 (767)
432 cd03296 ABC_CysA_sulfate_impor 96.4 0.0023 5E-08 52.1 2.9 25 17-41 28-52 (239)
433 PRK14242 phosphate transporter 96.4 0.0023 4.9E-08 52.5 2.9 23 18-40 33-55 (253)
434 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0025 5.4E-08 49.4 2.9 26 16-41 25-50 (173)
435 PRK10078 ribose 1,5-bisphospho 96.4 0.0025 5.3E-08 50.1 2.9 22 19-40 4-25 (186)
436 PRK13540 cytochrome c biogenes 96.4 0.0025 5.3E-08 50.6 2.9 26 16-41 26-51 (200)
437 PRK13541 cytochrome c biogenes 96.4 0.0029 6.2E-08 50.0 3.3 26 16-41 25-50 (195)
438 COG1134 TagH ABC-type polysacc 96.4 0.0024 5.2E-08 52.9 2.9 24 18-41 54-77 (249)
439 PRK13539 cytochrome c biogenes 96.4 0.0029 6.3E-08 50.5 3.3 26 16-41 27-52 (207)
440 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0025 5.4E-08 50.7 2.9 26 16-41 25-50 (208)
441 cd02023 UMPK Uridine monophosp 96.4 0.0025 5.4E-08 50.4 2.9 20 20-39 2-21 (198)
442 PRK14241 phosphate transporter 96.4 0.0024 5.2E-08 52.6 2.9 26 16-41 29-54 (258)
443 PRK11248 tauB taurine transpor 96.4 0.0024 5.3E-08 52.8 2.9 25 17-41 27-51 (255)
444 smart00382 AAA ATPases associa 96.4 0.0031 6.7E-08 44.9 3.1 24 18-41 3-26 (148)
445 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0026 5.7E-08 46.4 2.7 23 16-38 14-36 (107)
446 PRK11264 putative amino-acid A 96.4 0.0025 5.5E-08 52.1 2.9 24 18-41 30-53 (250)
447 cd03234 ABCG_White The White s 96.4 0.0031 6.8E-08 50.9 3.4 26 16-41 32-57 (226)
448 cd03295 ABC_OpuCA_Osmoprotecti 96.4 0.0026 5.7E-08 51.9 2.9 25 17-41 27-51 (242)
449 PF13671 AAA_33: AAA domain; P 96.4 0.0025 5.5E-08 47.2 2.6 20 20-39 2-21 (143)
450 cd03369 ABCC_NFT1 Domain 2 of 96.4 0.0026 5.7E-08 50.6 2.9 25 17-41 34-58 (207)
451 cd03246 ABCC_Protease_Secretio 96.4 0.0027 5.9E-08 49.3 2.9 26 16-41 27-52 (173)
452 PRK14250 phosphate ABC transpo 96.4 0.0027 5.8E-08 51.9 2.9 24 18-41 30-53 (241)
453 TIGR01184 ntrCD nitrate transp 96.4 0.0027 5.9E-08 51.6 2.9 25 17-41 11-35 (230)
454 cd03233 ABC_PDR_domain1 The pl 96.4 0.0025 5.5E-08 50.8 2.7 25 17-41 33-57 (202)
455 PRK10908 cell division protein 96.4 0.0032 7E-08 50.6 3.3 26 16-41 27-52 (222)
456 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0034 7.3E-08 48.6 3.3 26 16-41 26-51 (166)
457 PRK14239 phosphate transporter 96.4 0.0027 5.8E-08 52.0 2.9 23 18-40 32-54 (252)
458 TIGR00972 3a0107s01c2 phosphat 96.4 0.0027 5.8E-08 51.9 2.9 25 17-41 27-51 (247)
459 PRK15056 manganese/iron transp 96.4 0.0027 5.8E-08 52.9 2.9 26 16-41 32-57 (272)
460 PRK13543 cytochrome c biogenes 96.4 0.0028 6E-08 50.9 2.9 24 18-41 38-61 (214)
461 PRK10584 putative ABC transpor 96.4 0.0028 6.1E-08 51.1 2.9 26 16-41 35-60 (228)
462 cd03232 ABC_PDR_domain2 The pl 96.4 0.0032 6.8E-08 49.8 3.1 25 16-40 32-56 (192)
463 PRK00300 gmk guanylate kinase; 96.4 0.0032 7E-08 49.8 3.2 25 16-40 4-28 (205)
464 cd03274 ABC_SMC4_euk Eukaryoti 96.4 0.0046 9.9E-08 50.0 4.1 21 18-38 26-46 (212)
465 PRK14262 phosphate ABC transpo 96.4 0.0028 6.1E-08 51.9 2.9 24 18-41 30-53 (250)
466 cd03231 ABC_CcmA_heme_exporter 96.4 0.0029 6.4E-08 50.2 2.9 26 16-41 25-50 (201)
467 PRK13646 cbiO cobalt transport 96.4 0.0028 6E-08 53.3 2.9 26 16-41 32-57 (286)
468 cd03247 ABCC_cytochrome_bd The 96.4 0.003 6.5E-08 49.2 2.9 26 16-41 27-52 (178)
469 COG3839 MalK ABC-type sugar tr 96.3 0.0027 6E-08 55.0 2.9 23 19-41 31-53 (338)
470 PRK14274 phosphate ABC transpo 96.3 0.0027 5.9E-08 52.4 2.8 25 17-41 38-62 (259)
471 PRK13538 cytochrome c biogenes 96.3 0.0029 6.4E-08 50.3 2.9 25 17-41 27-51 (204)
472 cd01856 YlqF YlqF. Proteins o 96.3 0.002 4.3E-08 49.9 1.9 57 111-168 2-61 (171)
473 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0029 6.3E-08 51.2 2.9 26 16-41 27-52 (234)
474 PRK14247 phosphate ABC transpo 96.3 0.0029 6.2E-08 51.8 2.9 25 17-41 29-53 (250)
475 PRK14269 phosphate ABC transpo 96.3 0.0029 6.3E-08 51.8 2.9 26 16-41 27-52 (246)
476 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0035 7.6E-08 50.0 3.3 26 16-41 23-48 (211)
477 PRK14267 phosphate ABC transpo 96.3 0.0029 6.3E-08 51.9 2.9 25 17-41 30-54 (253)
478 COG4559 ABC-type hemin transpo 96.3 0.0034 7.3E-08 51.5 3.1 27 15-41 25-51 (259)
479 PRK10247 putative ABC transpor 96.3 0.0035 7.6E-08 50.7 3.3 25 17-41 33-57 (225)
480 PRK13648 cbiO cobalt transport 96.3 0.0029 6.4E-08 52.5 2.9 25 17-41 35-59 (269)
481 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0029 6.2E-08 51.4 2.8 26 16-41 28-53 (238)
482 PRK14273 phosphate ABC transpo 96.3 0.0029 6.4E-08 51.9 2.9 25 17-41 33-57 (254)
483 PRK10895 lipopolysaccharide AB 96.3 0.0035 7.6E-08 51.0 3.3 26 16-41 28-53 (241)
484 PRK13645 cbiO cobalt transport 96.3 0.0029 6.4E-08 53.1 2.9 26 16-41 36-61 (289)
485 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.003 6.6E-08 52.1 2.9 24 18-41 26-49 (246)
486 cd02042 ParA ParA and ParB of 96.3 0.012 2.6E-07 41.4 5.7 35 104-140 40-74 (104)
487 TIGR02323 CP_lyasePhnK phospho 96.3 0.0031 6.7E-08 51.7 2.9 24 18-41 30-53 (253)
488 TIGR03348 VI_IcmF type VI secr 96.3 0.0022 4.9E-08 63.7 2.4 18 20-37 114-131 (1169)
489 PRK11614 livF leucine/isoleuci 96.3 0.003 6.5E-08 51.3 2.8 26 16-41 30-55 (237)
490 PRK14248 phosphate ABC transpo 96.3 0.003 6.4E-08 52.4 2.8 23 18-40 48-70 (268)
491 cd03252 ABCC_Hemolysin The ABC 96.3 0.0031 6.7E-08 51.2 2.9 25 17-41 28-52 (237)
492 PRK14268 phosphate ABC transpo 96.3 0.0031 6.7E-08 52.1 2.9 24 18-41 39-62 (258)
493 PRK14251 phosphate ABC transpo 96.3 0.0031 6.7E-08 51.7 2.9 24 18-41 31-54 (251)
494 PRK11247 ssuB aliphatic sulfon 96.3 0.0031 6.8E-08 52.3 2.9 24 18-41 39-62 (257)
495 PRK14240 phosphate transporter 96.3 0.0031 6.8E-08 51.6 2.9 24 17-40 29-52 (250)
496 cd02025 PanK Pantothenate kina 96.3 0.003 6.5E-08 51.4 2.7 20 20-39 2-21 (220)
497 TIGR02324 CP_lyasePhnL phospho 96.3 0.0033 7.1E-08 50.6 2.9 26 16-41 33-58 (224)
498 TIGR03740 galliderm_ABC gallid 96.3 0.0033 7.2E-08 50.6 2.9 26 16-41 25-50 (223)
499 PRK10575 iron-hydroxamate tran 96.3 0.003 6.6E-08 52.3 2.8 24 18-41 38-61 (265)
500 cd03273 ABC_SMC2_euk Eukaryoti 96.3 0.0051 1.1E-07 50.6 4.1 22 18-39 26-47 (251)
No 1
>KOG0466|consensus
Probab=99.97 E-value=1.7e-32 Score=229.79 Aligned_cols=167 Identities=60% Similarity=0.926 Sum_probs=153.2
Q ss_pred CCCCccccccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCC
Q psy1174 5 GTLQSNWVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSN 84 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
.|+++++++++..+||+.|||+.|||||++.+++|..+.+|+.|.||++|++++|++.++|+|++++|++|.||++.+|.
T Consensus 26 ~pls~evisRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466|consen 26 HPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred CCCCHHHhhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HHhH
Q psy1174 85 KDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MATM 159 (182)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~~~ 159 (182)
++++++|.+.++...+..-+++.|+|||||.-++.+|+.|++..|+|+|+|.+++.++|+||.|||.-.-+ ...+
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466|consen 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEE
Confidence 99999999999999888889999999999999999999999999999999999999999999995421111 1144
Q ss_pred hccchhhhHHHH
Q psy1174 160 LNGAAVMDAALL 171 (182)
Q Consensus 160 ~nk~d~~~~~~~ 171 (182)
-||+|++.+...
T Consensus 186 QNKiDli~e~~A 197 (466)
T KOG0466|consen 186 QNKIDLIKESQA 197 (466)
T ss_pred echhhhhhHHHH
Confidence 799998875543
No 2
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.8e-29 Score=208.06 Aligned_cols=144 Identities=47% Similarity=0.778 Sum_probs=121.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..||+.+||++||||||+.+|+|.++++|.+|.+||+|+.++|++..+|+|.+ |..|.+|..+ +.|++.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~--c~~~~~y~~~-------~~C~~c 78 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPE--CYRPECYTTE-------PKCPNC 78 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCC--CCCCcccccC-------CCCCCC
Confidence 6788999999999999999999999999999999999999999999999999964 6666666533 555543
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH--------hHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA--------TMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~--------~~~nk~d~~ 166 (182)
++ .....+++.|+|+|||+-++.+|++|++.+|+|+|||+|++.++|+||+| |...+- ..-||+|++
T Consensus 79 g~--~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E---Hl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 79 GA--ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE---HLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CC--CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH---HHHHHhhhccceEEEEeccccee
Confidence 32 22445899999999999999999999999999999999999999999999 532222 347999999
Q ss_pred hHHHHh
Q psy1174 167 DAALLL 172 (182)
Q Consensus 167 ~~~~~~ 172 (182)
+++..+
T Consensus 154 ~~E~Al 159 (415)
T COG5257 154 SRERAL 159 (415)
T ss_pred cHHHHH
Confidence 866554
No 3
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=212.56 Aligned_cols=158 Identities=58% Similarity=0.875 Sum_probs=122.8
Q ss_pred CCCccccccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCC
Q psy1174 6 TLQSNWVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNK 85 (182)
Q Consensus 6 ~~~~~~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
|+.++++.++++.+|+++||+|||||||+++|++..++++++|.+||+|++++|+.+..|+| .+|..|.+|....+..
T Consensus 23 ~~~~~~~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~--~~~~~~~~~~~~~~~~ 100 (460)
T PTZ00327 23 PLTPEVISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKC--PKCPRPTCYQSYGSSK 100 (460)
T ss_pred cCCHHHccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccC--cccCCcccccccCCCc
Confidence 34456678899999999999999999999999999999999999999999999998888877 4566666665444332
Q ss_pred CCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HHhHh
Q psy1174 86 DDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MATML 160 (182)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~~~~ 160 (182)
..+..++..+ ......++++|||||||++|.++|+.|++.+|+++|||||.+|.+++||+|++..+.+ ...++
T Consensus 101 ~~~~~~~~~~--~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 101 PDNPPCPGCG--HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccccccc--ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 2223332211 1223347899999999999999999999999999999999986478999995432211 12469
Q ss_pred ccchhhh
Q psy1174 161 NGAAVMD 167 (182)
Q Consensus 161 nk~d~~~ 167 (182)
||+|+.+
T Consensus 179 NKiDlv~ 185 (460)
T PTZ00327 179 NKIDLVK 185 (460)
T ss_pred ecccccC
Confidence 9999875
No 4
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.5e-28 Score=202.83 Aligned_cols=127 Identities=35% Similarity=0.551 Sum_probs=108.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCc-------------cchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQT-------------VRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~-------------~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
.+++.||+.|||+|||||||..+|.+... +..++|++||+|+...-.. |
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahve---y--------------- 70 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVE---Y--------------- 70 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeE---E---------------
Confidence 47889999999999999999999974332 3467899999999875432 1
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH---
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA--- 157 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~--- 157 (182)
++.++++..+|||||.+|.++|+.|++++|+|||||+|.+| +.+||+| |.+|+.
T Consensus 71 -------------------et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-pmPqTrE---HiLlarqvG 127 (394)
T COG0050 71 -------------------ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTRE---HILLARQVG 127 (394)
T ss_pred -------------------ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-CCCcchh---hhhhhhhcC
Confidence 13348999999999999999999999999999999999999 9999999 766644
Q ss_pred -----hHhccchhhh-HHHHhhhcceeecC
Q psy1174 158 -----TMLNGAAVMD-AALLLIGKFKVQDM 181 (182)
Q Consensus 158 -----~~~nk~d~~~-~~~~~~~~~~~~~~ 181 (182)
.|+||+|++| ++++...+++++|+
T Consensus 128 vp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 128 VPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred CcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 6799999986 99999999998885
No 5
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.3e-26 Score=200.43 Aligned_cols=117 Identities=26% Similarity=0.369 Sum_probs=99.5
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeeccccce
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
...+++.|++++||+|||||||+++|+ |.. .|+.++|++||+|++...+.+.
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 456899999999999999999999997 332 2467889999999998875422
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc--
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-- 141 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-- 141 (182)
++.+.++++|||||.+|.++|+.|+++||+|||||||..|+
T Consensus 82 -------------------------------------t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE 124 (428)
T COG5256 82 -------------------------------------TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE 124 (428)
T ss_pred -------------------------------------cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccc
Confidence 33478999999999999999999999999999999999985
Q ss_pred ----ccccccccchhhHHHHhH--------hccchhhhH
Q psy1174 142 ----KTPEIVDCPGHDILMATM--------LNGAAVMDA 168 (182)
Q Consensus 142 ----~~~qt~e~l~~~il~~~~--------~nk~d~~~~ 168 (182)
+.+||+| |++|+.++ +||.|.+++
T Consensus 125 ~g~~~~gQtrE---H~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 125 AGFGVGGQTRE---HAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred cccccCCchhH---HHHHHHhcCCceEEEEEEccccccc
Confidence 8999999 88887754 899988753
No 6
>KOG0460|consensus
Probab=99.93 E-value=6.9e-27 Score=198.08 Aligned_cols=127 Identities=30% Similarity=0.521 Sum_probs=107.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCC-------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~-------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
++|+.||+.|||+|||||||..++.... -|+-++|++||+|+...-..
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHve------------------- 111 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVE------------------- 111 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeee-------------------
Confidence 6799999999999999999999997332 23567899999999764321
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH---
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA--- 157 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~--- 157 (182)
.++..+++..+|||||.||+++|+.|+++.|+|||||+|.+| +.+||+| |.+|+.
T Consensus 112 ------------------YeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG-~MPQTrE---HlLLArQVG 169 (449)
T KOG0460|consen 112 ------------------YETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTRE---HLLLARQVG 169 (449)
T ss_pred ------------------eeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC-CCcchHH---HHHHHHHcC
Confidence 123348899999999999999999999999999999999999 9999999 777765
Q ss_pred -----hHhccchhh-hHHHHhhhcceeecC
Q psy1174 158 -----TMLNGAAVM-DAALLLIGKFKVQDM 181 (182)
Q Consensus 158 -----~~~nk~d~~-~~~~~~~~~~~~~~~ 181 (182)
.|+||.|++ |.+++...+++.|.|
T Consensus 170 V~~ivvfiNKvD~V~d~e~leLVEmE~REl 199 (449)
T KOG0460|consen 170 VKHIVVFINKVDLVDDPEMLELVEMEIREL 199 (449)
T ss_pred CceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence 789999998 799998888887653
No 7
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=6e-25 Score=173.63 Aligned_cols=117 Identities=26% Similarity=0.429 Sum_probs=94.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC---------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~---------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
++++||+++||+|||||||+++|++.. .+..+.|.++++|+......+.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~---------------- 64 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE---------------- 64 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----------------
Confidence 467899999999999999999998322 2346778889999887664321
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
.....++++|||||||.+|.+++.+++..+|+||+|||+.+| +..|+++++..+ +.
T Consensus 65 -------------------~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-~~~~~~~~l~~~~~~~~p 124 (188)
T PF00009_consen 65 -------------------KNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-IQPQTEEHLKILRELGIP 124 (188)
T ss_dssp -------------------BTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-STHHHHHHHHHHHHTT-S
T ss_pred -------------------ccccccceeecccccccceeecccceecccccceeeeecccc-cccccccccccccccccc
Confidence 001228999999999999999999999999999999999999 999999966544 33
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 125 ~ivvlNK~D~~~ 136 (188)
T PF00009_consen 125 IIVVLNKMDLIE 136 (188)
T ss_dssp EEEEEETCTSSH
T ss_pred eEEeeeeccchh
Confidence 457799999874
No 8
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=1.9e-23 Score=167.22 Aligned_cols=114 Identities=34% Similarity=0.499 Sum_probs=91.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (182)
++.||+++||+|||||||+++|++. ..++.+.|++||+|++.....+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-------------------- 60 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY-------------------- 60 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe--------------------
Confidence 4678999999999999999999843 1346688999999998765321
Q ss_pred CCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HH
Q psy1174 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MA 157 (182)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~ 157 (182)
.+. .++++|||||||.+|..++..++..+|+|++|||+.+| +..|+++++..+.. ..
T Consensus 61 ---------~~~--------~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~~~iI 122 (195)
T cd01884 61 ---------ETA--------NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG-PMPQTREHLLLARQVGVPYIV 122 (195)
T ss_pred ---------cCC--------CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCcEE
Confidence 111 27899999999999999999999999999999999999 99999986654321 22
Q ss_pred hHhccchhhh
Q psy1174 158 TMLNGAAVMD 167 (182)
Q Consensus 158 ~~~nk~d~~~ 167 (182)
.++||+|.++
T Consensus 123 vviNK~D~~~ 132 (195)
T cd01884 123 VFLNKADMVD 132 (195)
T ss_pred EEEeCCCCCC
Confidence 5689999763
No 9
>PLN03127 Elongation factor Tu; Provisional
Probab=99.87 E-value=1.5e-22 Score=180.00 Aligned_cols=116 Identities=33% Similarity=0.488 Sum_probs=94.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
.++++||+++||+|||||||+++|.+. ..|+.++|++||+|++.....+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~----------------- 120 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE----------------- 120 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-----------------
Confidence 578899999999999999999999732 24566789999999997653210
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----- 155 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----- 155 (182)
...++++|||||||.+|..++..++..+|+++||||+.+| +..||++++..+..
T Consensus 121 --------------------~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-~~~qt~e~l~~~~~~gip~ 179 (447)
T PLN03127 121 --------------------TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGVPS 179 (447)
T ss_pred --------------------CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCCCe
Confidence 1127899999999999999999999999999999999999 99999996654321
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|.++
T Consensus 180 iIvviNKiDlv~ 191 (447)
T PLN03127 180 LVVFLNKVDVVD 191 (447)
T ss_pred EEEEEEeeccCC
Confidence 124589999874
No 10
>PRK12736 elongation factor Tu; Reviewed
Probab=99.87 E-value=1.5e-22 Score=177.46 Aligned_cols=116 Identities=34% Similarity=0.484 Sum_probs=94.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++++||+++||+|||||||+++|++. ..++.++|+++|+|++.....+.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~----------------- 71 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE----------------- 71 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-----------------
Confidence 678899999999999999999999853 24567899999999988653210
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----- 155 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----- 155 (182)
...++++|||||||.+|..++..++..+|++++|||+.+| +..||++++..+..
T Consensus 72 --------------------~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~g~~~ 130 (394)
T PRK12736 72 --------------------TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQVGVPY 130 (394)
T ss_pred --------------------CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCCCE
Confidence 1127899999999999999999999999999999999999 99999996654321
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|.++
T Consensus 131 ~IvviNK~D~~~ 142 (394)
T PRK12736 131 LVVFLNKVDLVD 142 (394)
T ss_pred EEEEEEecCCcc
Confidence 124599999874
No 11
>CHL00071 tufA elongation factor Tu
Probab=99.87 E-value=1.2e-22 Score=178.69 Aligned_cols=117 Identities=32% Similarity=0.446 Sum_probs=95.4
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
++++++||+++||+|||||||+++|++. ..|+.++|+++|+|++.....+ .
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~---~------------- 71 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY---E------------- 71 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE---c-------------
Confidence 3678899999999999999999999853 2356788999999998755221 0
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL---- 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il---- 155 (182)
+ ..++++|+|||||.+|..++.+++..+|++++||||.+| +..||++++..+..
T Consensus 72 -------------~--------~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~g~~ 129 (409)
T CHL00071 72 -------------T--------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTKEHILLAKQVGVP 129 (409)
T ss_pred -------------c--------CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC
Confidence 1 127899999999999999999999999999999999999 99999996654321
Q ss_pred -HHhHhccchhhh
Q psy1174 156 -MATMLNGAAVMD 167 (182)
Q Consensus 156 -~~~~~nk~d~~~ 167 (182)
...++||+|..+
T Consensus 130 ~iIvvvNK~D~~~ 142 (409)
T CHL00071 130 NIVVFLNKEDQVD 142 (409)
T ss_pred EEEEEEEccCCCC
Confidence 124699999875
No 12
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=5.2e-22 Score=159.05 Aligned_cols=146 Identities=60% Similarity=0.899 Sum_probs=106.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+||+++||+|||||||+++|.+...++.+.|.++|+|+..+++.+...+.++..+..|.+|..... ....+...+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKED----SPECECPGCG 76 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccc----cccccccccC
Confidence 479999999999999999999887788889999999999998877665555545555544432211 1111111111
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH-----HHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI-----LMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i-----l~~~~~nk~d~~~ 167 (182)
...+..++++|+|||||.+|..++..++..+|++++|||+.++.+..++.+++..+. ....++||+|+.+
T Consensus 77 ~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 77 GETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred CccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 112234789999999999999999999999999999999998536677777553321 1235799999875
No 13
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=4e-22 Score=174.65 Aligned_cols=116 Identities=34% Similarity=0.463 Sum_probs=94.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++++||+++||+|||||||+++|++. ..++.++|+++|+|++..... +
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~--~---------------- 70 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE--Y---------------- 70 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE--E----------------
Confidence 578899999999999999999999843 346778999999999875521 1
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----H
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----M 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~ 156 (182)
. ..+++++|+|||||++|..++..++..+|+++||||+.+| +..||++++..+.. .
T Consensus 71 -----------~--------~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~gi~~ 130 (394)
T TIGR00485 71 -----------E--------TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG-PMPQTREHILLARQVGVPY 130 (394)
T ss_pred -----------c--------CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCE
Confidence 0 1127899999999999999999999999999999999999 99999995544311 1
Q ss_pred H-hHhccchhhh
Q psy1174 157 A-TMLNGAAVMD 167 (182)
Q Consensus 157 ~-~~~nk~d~~~ 167 (182)
. .++||+|..+
T Consensus 131 iIvvvNK~Dl~~ 142 (394)
T TIGR00485 131 IVVFLNKCDMVD 142 (394)
T ss_pred EEEEEEecccCC
Confidence 1 3589999874
No 14
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.86 E-value=4.4e-22 Score=177.04 Aligned_cols=114 Identities=24% Similarity=0.316 Sum_probs=91.5
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHh---cC-------------------------CccchhhHhhhceeeeecccccee
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAIS---GV-------------------------QTVRFKNELERNITIKLGYANAKI 64 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~---g~-------------------------~~~~~~~e~~~g~t~~~~~~~~~~ 64 (182)
.+++++||+++||+|||||||+++|+ |. ..|+.++|++||+|++..+..+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~-- 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-- 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--
Confidence 45788999999999999999999997 22 1345678999999998866321
Q ss_pred eecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc--
Q psy1174 65 YKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK-- 142 (182)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-- 142 (182)
.+. .++++|||||||.+|..+++.+++.+|+|+|||||.+| +
T Consensus 81 ---------------------------~~~--------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-~~e 124 (446)
T PTZ00141 81 ---------------------------ETP--------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG-EFE 124 (446)
T ss_pred ---------------------------ccC--------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC-cee
Confidence 112 27899999999999999999999999999999999998 5
Q ss_pred -----cccccccchhhHH-----HHhHhccch
Q psy1174 143 -----TPEIVDCPGHDIL-----MATMLNGAA 164 (182)
Q Consensus 143 -----~~qt~e~l~~~il-----~~~~~nk~d 164 (182)
.+||++|+..+.. ...++||+|
T Consensus 125 ~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 125 AGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 5899995543321 125699999
No 15
>PLN03126 Elongation factor Tu; Provisional
Probab=99.86 E-value=4.9e-22 Score=177.92 Aligned_cols=116 Identities=32% Similarity=0.453 Sum_probs=94.7
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++++||+++||+|||||||+++|++. ..|+.++|+++|+|++..+..+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~----------------- 140 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE----------------- 140 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-----------------
Confidence 578899999999999999999999841 23456789999999988663211
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----- 155 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----- 155 (182)
+. .++++|||||||.+|.+++..|+..+|+++|||||.+| +.+||++++..+..
T Consensus 141 ------------~~--------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-~~~qt~e~~~~~~~~gi~~ 199 (478)
T PLN03126 141 ------------TE--------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHILLAKQVGVPN 199 (478)
T ss_pred ------------cC--------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCe
Confidence 11 27899999999999999999999999999999999999 99999996654322
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|..+
T Consensus 200 iIvvvNK~Dl~~ 211 (478)
T PLN03126 200 MVVFLNKQDQVD 211 (478)
T ss_pred EEEEEecccccC
Confidence 124699999875
No 16
>KOG0462|consensus
Probab=99.86 E-value=8.9e-23 Score=181.32 Aligned_cols=118 Identities=26% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cCC---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GVQ---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (182)
...+|++||.|+|||||||.++|+ |.. .|+.+-|+|||+|++...+.+.. +.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~--------------- 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KD--------------- 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-Ec---------------
Confidence 457899999999999999999998 422 34667899999999987765443 11
Q ss_pred CCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHh
Q psy1174 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMAT 158 (182)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~ 158 (182)
...+.+|+||||||.||..++.+.+..+|+|||||||.+| ++.||...+..+ +...-
T Consensus 122 ------------------~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG-vqAQT~anf~lAfe~~L~iIp 182 (650)
T KOG0462|consen 122 ------------------GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG-VQAQTVANFYLAFEAGLAIIP 182 (650)
T ss_pred ------------------CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC-chHHHHHHHHHHHHcCCeEEE
Confidence 0127899999999999999999999999999999999999 999998733211 11224
Q ss_pred Hhccchhhh
Q psy1174 159 MLNGAAVMD 167 (182)
Q Consensus 159 ~~nk~d~~~ 167 (182)
.+||+|+..
T Consensus 183 VlNKIDlp~ 191 (650)
T KOG0462|consen 183 VLNKIDLPS 191 (650)
T ss_pred eeeccCCCC
Confidence 599999874
No 17
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.4e-22 Score=187.60 Aligned_cols=119 Identities=20% Similarity=0.271 Sum_probs=101.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACY 78 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ 78 (182)
....|||+|+||+|||||||.++|+ |. ..|..+.|++||+|+....+++..
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-------------- 72 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-------------- 72 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE--------------
Confidence 4578999999999999999999997 22 245778999999999987754332
Q ss_pred ccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----H
Q psy1174 79 ISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----I 154 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----i 154 (182)
.+ .++||+||||||.||..++.++++.+|+|++||||.+| +++||+.+++++ +
T Consensus 73 ---------------~~-------~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG-V~~QTEtv~rqa~~~~v 129 (697)
T COG0480 73 ---------------KG-------DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG-VEPQTETVWRQADKYGV 129 (697)
T ss_pred ---------------cC-------ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC-eeecHHHHHHHHhhcCC
Confidence 21 28999999999999999999999999999999999999 999999988776 5
Q ss_pred HHHhHhccchhhhHH
Q psy1174 155 LMATMLNGAAVMDAA 169 (182)
Q Consensus 155 l~~~~~nk~d~~~~~ 169 (182)
....|+||.|....+
T Consensus 130 p~i~fiNKmDR~~a~ 144 (697)
T COG0480 130 PRILFVNKMDRLGAD 144 (697)
T ss_pred CeEEEEECccccccC
Confidence 677999999976533
No 18
>PRK12735 elongation factor Tu; Reviewed
Probab=99.86 E-value=8.7e-22 Score=172.68 Aligned_cols=116 Identities=34% Similarity=0.465 Sum_probs=93.6
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++++||+++||+|||||||+++|++. ..++.++|+++|+|++.....+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~------------------ 70 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY------------------ 70 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE------------------
Confidence 578899999999999999999999852 2456788999999998755210
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----H
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----M 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~ 156 (182)
. ....+++|+|||||.+|..++..++..+|++++|||+.+| +..|+++++..+.. .
T Consensus 71 -----------~--------~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-~~~qt~e~l~~~~~~gi~~ 130 (396)
T PRK12735 71 -----------E--------TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPY 130 (396)
T ss_pred -----------c--------CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchhHHHHHHHHHHcCCCe
Confidence 0 1126899999999999999999999999999999999999 89999996644321 1
Q ss_pred H-hHhccchhhh
Q psy1174 157 A-TMLNGAAVMD 167 (182)
Q Consensus 157 ~-~~~nk~d~~~ 167 (182)
. .++||+|..+
T Consensus 131 iivvvNK~Dl~~ 142 (396)
T PRK12735 131 IVVFLNKCDMVD 142 (396)
T ss_pred EEEEEEecCCcc
Confidence 2 3589999874
No 19
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.86 E-value=2.8e-22 Score=163.53 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=91.9
Q ss_pred cceEEECCCCCChHHHHhHHhcC---C----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV---Q----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSN 84 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~---~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
|||+++||++||||||+++|+.. . .|..+.|++||+|++.+...+.. ...+ ..
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~-~~~~-------------~~ 66 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYF-EYEE-------------ED 66 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEE-ecCc-------------cc
Confidence 68999999999999999999722 1 24567899999998876533221 1000 00
Q ss_pred CCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HHHhHh
Q psy1174 85 KDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMATML 160 (182)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~~~~ 160 (182)
.. ....++++++|||||.+|..++..+++.+|++++|||+.+| +..|+++++.++. ....++
T Consensus 67 -----~~--------~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~~~~p~ilvi 132 (222)
T cd01885 67 -----KA--------DGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-VCVQTETVLRQALKERVKPVLVI 132 (222)
T ss_pred -----cc--------CCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEE
Confidence 00 01127899999999999999999999999999999999999 8999988776542 345779
Q ss_pred ccchhh
Q psy1174 161 NGAAVM 166 (182)
Q Consensus 161 nk~d~~ 166 (182)
||+|..
T Consensus 133 NKiD~~ 138 (222)
T cd01885 133 NKIDRL 138 (222)
T ss_pred ECCCcc
Confidence 999965
No 20
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.86 E-value=1.1e-21 Score=174.57 Aligned_cols=117 Identities=24% Similarity=0.304 Sum_probs=90.7
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeecccccee
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKI 64 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~~ 64 (182)
.+++++||+++||+|||||||+++|+ |.. .|..++|++||+|++..+..+.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~- 81 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE- 81 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-
Confidence 36789999999999999999999997 311 2445788999999988653211
Q ss_pred eecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc-
Q psy1174 65 YKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT- 143 (182)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~- 143 (182)
...+.+++||||||.+|..+|..|++.+|+|||||||.+|.++
T Consensus 82 ------------------------------------~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~ 125 (447)
T PLN00043 82 ------------------------------------TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEA 125 (447)
T ss_pred ------------------------------------CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceec
Confidence 1228899999999999999999999999999999999997433
Q ss_pred -----ccccccchhh----H-HHHhHhccchhh
Q psy1174 144 -----PEIVDCPGHD----I-LMATMLNGAAVM 166 (182)
Q Consensus 144 -----~qt~e~l~~~----i-l~~~~~nk~d~~ 166 (182)
+||++++..+ + ....++||+|..
T Consensus 126 g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 126 GISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred ccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 7999944321 1 012458999965
No 21
>PRK00049 elongation factor Tu; Reviewed
Probab=99.85 E-value=1.6e-21 Score=171.04 Aligned_cols=116 Identities=34% Similarity=0.479 Sum_probs=94.3
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
.++++||+++||+|||||||+++|++. ..++.++|++||+|++.....+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~----------------- 71 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE----------------- 71 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-----------------
Confidence 578899999999999999999999852 23567899999999988653210
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----H
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----M 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~ 156 (182)
+ ..++++|||||||.+|..++..++..+|++++|||+.+| +..|+++++..+.. .
T Consensus 72 ------------~--------~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~g~p~ 130 (396)
T PRK00049 72 ------------T--------EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPY 130 (396)
T ss_pred ------------C--------CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchHHHHHHHHHHHcCCCE
Confidence 1 127899999999999999999999999999999999999 99999996654321 1
Q ss_pred H-hHhccchhhh
Q psy1174 157 A-TMLNGAAVMD 167 (182)
Q Consensus 157 ~-~~~nk~d~~~ 167 (182)
. .++||+|.++
T Consensus 131 iiVvvNK~D~~~ 142 (396)
T PRK00049 131 IVVFLNKCDMVD 142 (396)
T ss_pred EEEEEeecCCcc
Confidence 1 3589999874
No 22
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.85 E-value=4.1e-21 Score=168.93 Aligned_cols=142 Identities=42% Similarity=0.722 Sum_probs=102.7
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+++..+|+++||+|||||||+++|.+...++.++|.+||+|++++++.+..+.+. .+..|.+|..... +..
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~ 71 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCP--ECDGPECYTTEPV-------CPN 71 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEeccccccccccc--ccCcccccccccc-------ccc
Confidence 4678899999999999999999999887888899999999999998765543221 1111112211100 000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc-cccccccchhhHH-----HHhHhccchhhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK-TPEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-~~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
.+ ......+.++++|||||.+|..++..+++.+|++++|||+.+| . ..|+++++..+.. ...++||+|+.+
T Consensus 72 ~~--~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 72 CG--SETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP-CPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred cc--cccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC-ccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 00 0011237899999999999999999999999999999999998 6 8899985543211 124599999864
No 23
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.85 E-value=8.6e-22 Score=186.61 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=97.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCC-------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~-------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
...++||+|+||+|||||||+++|+... .|..++|++||+|+..+...+.. ... |.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~------~~~~-- 86 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY-EMT------DESL-- 86 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEe-ecc------cccc--
Confidence 3567899999999999999999998221 45778999999999876643221 000 0000
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HH
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LM 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~ 156 (182)
.+ + .+ ......+.+|+||||||.+|..++.+|++.+|+||+||||.+| ++.||+.+++++. ..
T Consensus 87 ----~~--~----~~--~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G-v~~~t~~~~~~~~~~~~p~ 153 (843)
T PLN00116 87 ----KD--F----KG--ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRP 153 (843)
T ss_pred ----cc--c----cc--ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC-CcccHHHHHHHHHHCCCCE
Confidence 00 0 00 0011237899999999999999999999999999999999999 9999999887653 34
Q ss_pred HhHhccchhh
Q psy1174 157 ATMLNGAAVM 166 (182)
Q Consensus 157 ~~~~nk~d~~ 166 (182)
+.++||+|..
T Consensus 154 i~~iNK~D~~ 163 (843)
T PLN00116 154 VLTVNKMDRC 163 (843)
T ss_pred EEEEECCccc
Confidence 5889999976
No 24
>KOG0458|consensus
Probab=99.84 E-value=2.6e-21 Score=172.94 Aligned_cols=116 Identities=23% Similarity=0.361 Sum_probs=93.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeeccccceee
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKIY 65 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~~~ 65 (182)
.+++++.+++||+|+|||||+++|+ |.. .|..++|++||+|.+.+.+++.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 4577899999999999999999997 332 2344677888888777664421
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----
Q psy1174 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA---- 141 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~---- 141 (182)
+..+.++++|+|||.+|..+|+.|+.+||+|+|||||+.|.
T Consensus 252 -----------------------------------s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~g 296 (603)
T KOG0458|consen 252 -----------------------------------SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESG 296 (603)
T ss_pred -----------------------------------cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhc
Confidence 22378999999999999999999999999999999999875
Q ss_pred --ccccccccchhhHHHH--------hHhccchhhhHH
Q psy1174 142 --KTPEIVDCPGHDILMA--------TMLNGAAVMDAA 169 (182)
Q Consensus 142 --~~~qt~e~l~~~il~~--------~~~nk~d~~~~~ 169 (182)
+.+||+| |++++. ..+||.|.+++.
T Consensus 297 fd~~gQtrE---ha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 297 FDPGGQTRE---HALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCCCCchHH---HHHHHHHcCcceEEEEeecccccCcc
Confidence 6779999 887765 449999988643
No 25
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.84 E-value=3.2e-21 Score=169.65 Aligned_cols=112 Identities=25% Similarity=0.293 Sum_probs=88.2
Q ss_pred cceEEECCCCCChHHHHhHHh---cCC---------------------------ccchhhHhhhceeeeeccccceeeec
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS---GVQ---------------------------TVRFKNELERNITIKLGYANAKIYKC 67 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~---g~~---------------------------~~~~~~e~~~g~t~~~~~~~~~~~~~ 67 (182)
++|+++||+|||||||+++|+ |.. .|+.++|++||+|++..+..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 479999999999999999996 211 2455678888888887664311
Q ss_pred CCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc
Q psy1174 68 DNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV 147 (182)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~ 147 (182)
+. +++++|+|||||.+|.+++..++..+|+||+||||.+| +..||+
T Consensus 77 -------------------------~~--------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G-~~~qt~ 122 (406)
T TIGR02034 77 -------------------------TD--------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG-VLEQTR 122 (406)
T ss_pred -------------------------cC--------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CccccH
Confidence 12 27899999999999999999999999999999999999 999999
Q ss_pred ccchhhHH-----HHhHhccchhhh
Q psy1174 148 DCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 148 e~l~~~il-----~~~~~nk~d~~~ 167 (182)
+++..+.. ...++||+|..+
T Consensus 123 ~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 123 RHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred HHHHHHHHcCCCcEEEEEEeccccc
Confidence 85533211 224699999764
No 26
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-21 Score=171.64 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=93.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC---c----------cchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ---T----------VRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~---~----------~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
++.+||+||.|+|||||||+++|+.+. . |...-|+|||+|+-...+.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTa-------------------- 62 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTA-------------------- 62 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccce--------------------
Confidence 467999999999999999999998432 1 2335689999998654432
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~ 157 (182)
..|++ ++||++|||||.+|-.++.+.++-.|+|+|+|||.+| +.+||+.+++-+ +...
T Consensus 63 ---------v~~~~--------~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~gL~PI 124 (603)
T COG1217 63 ---------VNYNG--------TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALALGLKPI 124 (603)
T ss_pred ---------eecCC--------eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHcCCCcE
Confidence 22445 8999999999999999999999999999999999999 999999977543 2234
Q ss_pred hHhccchhhh
Q psy1174 158 TMLNGAAVMD 167 (182)
Q Consensus 158 ~~~nk~d~~~ 167 (182)
..+||+|-.+
T Consensus 125 VVvNKiDrp~ 134 (603)
T COG1217 125 VVINKIDRPD 134 (603)
T ss_pred EEEeCCCCCC
Confidence 6699999765
No 27
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.84 E-value=7.3e-21 Score=170.39 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=91.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHh---cCC---------------------------ccchhhHhhhceeeeeccccce
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAIS---GVQ---------------------------TVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~---g~~---------------------------~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
.++.++|+++||+|||||||+++|+ |.. .|+.++|++||+|++..+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4677899999999999999999997 211 1345678888888887653211
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT 143 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~ 143 (182)
+. .++++|||||||.+|..++..++..+|+|+|||||.+| +.
T Consensus 104 -----------------------------~~--------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G-~~ 145 (474)
T PRK05124 104 -----------------------------TE--------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG-VL 145 (474)
T ss_pred -----------------------------cC--------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-cc
Confidence 11 27899999999999999999999999999999999999 99
Q ss_pred ccccccchhhHH-----HHhHhccchhhh
Q psy1174 144 PEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 144 ~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
.||++++..+.. ...++||+|..+
T Consensus 146 ~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 146 DQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred ccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 999985432211 124699999773
No 28
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=7.1e-21 Score=168.04 Aligned_cols=118 Identities=30% Similarity=0.440 Sum_probs=93.6
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeeccccce
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
|++++++||+++||+|||||||+++|+ |.. .|+.++|+++|+|++..+..+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 467889999999999999999999998 221 2455778889999888764321
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCC--Cc
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN--AA 141 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~--g~ 141 (182)
+. .++++|+|||||.+|..++..+++.+|++|+|||+.+ |
T Consensus 81 -----------------------------~~--------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~- 122 (425)
T PRK12317 81 -----------------------------TD--------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG- 122 (425)
T ss_pred -----------------------------cC--------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC-
Confidence 11 2789999999999999999999999999999999999 8
Q ss_pred ccccccccchhhH-----HHHhHhccchhhh
Q psy1174 142 KTPEIVDCPGHDI-----LMATMLNGAAVMD 167 (182)
Q Consensus 142 ~~~qt~e~l~~~i-----l~~~~~nk~d~~~ 167 (182)
+..|+++++..+. ....++||+|+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 123 VMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 8889988543321 1234689999864
No 29
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.83 E-value=2.9e-21 Score=161.74 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=90.2
Q ss_pred ceEEECCCCCChHHHHhHHh---cCC------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS---GVQ------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~---g~~------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
||+++||+|||||||+++|+ |.. .++.+.|++||+|++.....+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-------------------- 60 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-------------------- 60 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE--------------------
Confidence 79999999999999999997 321 2455778889999887764322
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
|.+ ++++++|||||.+|..++..+++.+|++|+|||+.+| ++.++++++..+ +....+
T Consensus 61 ---------~~~--------~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g-~~~~t~~~~~~~~~~~~p~ivv 122 (270)
T cd01886 61 ---------WKD--------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG-VEPQTETVWRQADRYNVPRIAF 122 (270)
T ss_pred ---------ECC--------EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 222 8899999999999999999999999999999999999 888888766543 234477
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|...
T Consensus 123 iNK~D~~~ 130 (270)
T cd01886 123 VNKMDRTG 130 (270)
T ss_pred EECCCCCC
Confidence 99999763
No 30
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=1.4e-20 Score=173.06 Aligned_cols=113 Identities=35% Similarity=0.564 Sum_probs=94.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++||+|||||||+++|+|...+++++|.++|+|++.+++.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~---------------------------------- 47 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ---------------------------------- 47 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec----------------------------------
Confidence 5899999999999999999998888889999999999998753211
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HHhHhccchhhhH
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MATMLNGAAVMDA 168 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~~~~nk~d~~~~ 168 (182)
.++..++|+|||||++|.++|..++..+|++++|||+.+| +.+||++++..+.. ....+||+|+.+.
T Consensus 48 --~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg-~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 48 --PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG-VMAQTREHLAILQLTGNPMLTVALTKADRVDE 119 (614)
T ss_pred --CCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEECCccCCH
Confidence 0125789999999999999999999999999999999999 99999996643211 1256899998753
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.9e-21 Score=175.39 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=92.4
Q ss_pred CcceEEECCCCCChHHHHhHHh---cCC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS---GVQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~---g~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
+|||+|+||+|||||||+++|+ |.. .|..+.|++||+|+......+.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-------------------- 60 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-------------------- 60 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE--------------------
Confidence 4799999999999999999998 322 2456789999999987654322
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
|.+ ++++++|||||.+|..++.++++.+|+++|||||.+| ++.||++++..+ +....+
T Consensus 61 ---------~~~--------~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~ip~IVv 122 (594)
T TIGR01394 61 ---------YNG--------TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELGLKPIVV 122 (594)
T ss_pred ---------ECC--------EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCCCCEEEE
Confidence 222 8899999999999999999999999999999999999 999999866543 233467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|..+
T Consensus 123 iNKiD~~~ 130 (594)
T TIGR01394 123 INKIDRPS 130 (594)
T ss_pred EECCCCCC
Confidence 99999753
No 32
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3e-21 Score=168.19 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=95.1
Q ss_pred CcceEEECCCCCChHHHHhHHh--c-C----------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS--G-V----------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPAC 77 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~--g-~----------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 77 (182)
.++.+||.|+|+|||||.+.|+ | . .+|.++.|++||+++..+...
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMq---------------- 75 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQ---------------- 75 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEE----------------
Confidence 4678999999999999999886 2 1 145788999999999887733
Q ss_pred cccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch----hh
Q psy1174 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HD 153 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~ 153 (182)
+++.+ +.+|++|||||+||+..+.+.+..+|.|++||||..| +.+||+..+. ..
T Consensus 76 -------------F~Y~~--------~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrlR~ 133 (528)
T COG4108 76 -------------FDYAD--------CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRLRD 133 (528)
T ss_pred -------------eccCC--------eEEeccCCCCccccchhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhhcC
Confidence 33344 8999999999999999999999999999999999999 9999987443 33
Q ss_pred HHHHhHhccchhhh
Q psy1174 154 ILMATMLNGAAVMD 167 (182)
Q Consensus 154 il~~~~~nk~d~~~ 167 (182)
++.++|+||.|-..
T Consensus 134 iPI~TFiNKlDR~~ 147 (528)
T COG4108 134 IPIFTFINKLDREG 147 (528)
T ss_pred CceEEEeecccccc
Confidence 67789999999664
No 33
>PTZ00416 elongation factor 2; Provisional
Probab=99.82 E-value=1.2e-20 Score=178.80 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=96.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc---CC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG---VQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g---~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
..++||+|+||+|||||||+++|+. .. .|+.+.|++||+|+..+...+.. ...
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~------------- 82 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYY-EHD------------- 82 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEe-ecc-------------
Confidence 4678999999999999999999983 21 45778999999999876543221 000
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~ 157 (182)
.. .......+.++|||||||.+|..++..+++.+|+||+||||.+| +..||+.+++++. ..+
T Consensus 83 ~~-------------~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g-~~~~t~~~~~~~~~~~~p~i 148 (836)
T PTZ00416 83 LE-------------DGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG-VCVQTETVLRQALQERIRPV 148 (836)
T ss_pred cc-------------cccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC-cCccHHHHHHHHHHcCCCEE
Confidence 00 00001127899999999999999999999999999999999999 9999999776553 356
Q ss_pred hHhccchhh
Q psy1174 158 TMLNGAAVM 166 (182)
Q Consensus 158 ~~~nk~d~~ 166 (182)
.++||+|..
T Consensus 149 v~iNK~D~~ 157 (836)
T PTZ00416 149 LFINKVDRA 157 (836)
T ss_pred EEEEChhhh
Confidence 789999976
No 34
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=6.1e-20 Score=161.84 Aligned_cols=143 Identities=41% Similarity=0.677 Sum_probs=100.4
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCL 92 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (182)
++++.+||+++||+|||||||+++|.+...++.++|.+||+|++.+++...+... ..+..|..|......
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------- 74 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKC--PDCEEPEAYTTEPKC-------- 74 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccc--cccCccccccccccc--------
Confidence 4578899999999999999999999988788889999999999998765443111 001111111110000
Q ss_pred CCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc-cccccccchhhHH-----HHhHhccchhh
Q psy1174 93 RSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK-TPEIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 93 ~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-~~qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
..+.......++++|+|||||.+|..++..++..+|++++|||+.+| . ..++.+++..+.. ...++||+|+.
T Consensus 75 -~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~-~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 75 -PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP-CPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred -cccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 00000011126899999999999999999999999999999999998 5 7788775543211 22447999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 153 ~ 153 (411)
T PRK04000 153 S 153 (411)
T ss_pred c
Confidence 5
No 35
>PRK00007 elongation factor G; Reviewed
Probab=99.81 E-value=2.6e-20 Score=173.45 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=94.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
..++||+|+||+|||||||+++|+ |. ..|+.+.|++||+|++.....+.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~---------------- 71 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF---------------- 71 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE----------------
Confidence 457899999999999999999997 32 13466788999999988765422
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
|.+ ++++|||||||.+|..++.+++..+|+||+||||.+| ++.||++++.++ +.
T Consensus 72 -------------~~~--------~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g-~~~qt~~~~~~~~~~~~p 129 (693)
T PRK00007 72 -------------WKD--------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG-VEPQSETVWRQADKYKVP 129 (693)
T ss_pred -------------ECC--------eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC-cchhhHHHHHHHHHcCCC
Confidence 122 7899999999999999999999999999999999999 999999866543 23
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|..+
T Consensus 130 ~iv~vNK~D~~~ 141 (693)
T PRK00007 130 RIAFVNKMDRTG 141 (693)
T ss_pred EEEEEECCCCCC
Confidence 447799999764
No 36
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.9e-20 Score=157.19 Aligned_cols=114 Identities=25% Similarity=0.300 Sum_probs=94.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC---C---------------------------ccchhhHhhhceeeeeccccce
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV---Q---------------------------TVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~---~---------------------------~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
.+..+++..+|++|.|||||+++|+.- . .|-.+.|+|+|+|++..|--
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy-- 80 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY-- 80 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--
Confidence 456789999999999999999999721 1 12346799999999998731
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT 143 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~ 143 (182)
+.+++++|.+.|||||+.|..+|.+|++-||.||++|||..| +.
T Consensus 81 -----------------------------------FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl 124 (431)
T COG2895 81 -----------------------------------FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VL 124 (431)
T ss_pred -----------------------------------cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hH
Confidence 113448999999999999999999999999999999999999 99
Q ss_pred ccccccchhhHHHHhH--------hccchhhhH
Q psy1174 144 PEIVDCPGHDILMATM--------LNGAAVMDA 168 (182)
Q Consensus 144 ~qt~e~l~~~il~~~~--------~nk~d~~~~ 168 (182)
.||+. |..++..| +||+|++|-
T Consensus 125 ~QTrR---Hs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 125 EQTRR---HSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred HHhHH---HHHHHHHhCCcEEEEEEeeeccccc
Confidence 99999 66554433 999999873
No 37
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=7.8e-21 Score=166.97 Aligned_cols=119 Identities=24% Similarity=0.291 Sum_probs=95.0
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHh---cCC---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAIS---GVQ---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~---g~~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
..+.+||++||.|.|||||||.++|+ |.. .|.+.-|+|||+|++.....+. |+.++
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~-Yk~~~----------- 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLN-YKAKD----------- 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEE-EEeCC-----------
Confidence 34568999999999999999999998 322 4566789999999998765433 22110
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH---
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA--- 157 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~--- 157 (182)
...+.+++||||||.+|.-++.++++.+.+|||||||..| ++.||.. ...++.
T Consensus 73 --------------------g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG-veAQTlA---N~YlAle~~ 128 (603)
T COG0481 73 --------------------GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLA---NVYLALENN 128 (603)
T ss_pred --------------------CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc-hHHHHHH---HHHHHHHcC
Confidence 0228899999999999999999999999999999999999 9999976 444433
Q ss_pred ----hHhccchhhh
Q psy1174 158 ----TMLNGAAVMD 167 (182)
Q Consensus 158 ----~~~nk~d~~~ 167 (182)
-.+||+|+..
T Consensus 129 LeIiPViNKIDLP~ 142 (603)
T COG0481 129 LEIIPVLNKIDLPA 142 (603)
T ss_pred cEEEEeeecccCCC
Confidence 3499999874
No 38
>KOG1145|consensus
Probab=99.80 E-value=2.8e-20 Score=165.61 Aligned_cols=112 Identities=23% Similarity=0.386 Sum_probs=93.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+++.|.|.||+|||||||+++|.+... ......|+|+.++...+.+.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~V---AA~E~GGITQhIGAF~V~~p------------------------------ 198 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSV---AAGEAGGITQHIGAFTVTLP------------------------------ 198 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCce---ehhhcCCccceeceEEEecC------------------------------
Confidence 456789999999999999999986432 12334889999988554441
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
++..++|+|||||..|..++.+|+..+|.++|||.|.+| +.+||.|.+.|+ .+.+..+||+|...
T Consensus 199 ------~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG-VmpQT~EaIkhAk~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 199 ------SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG-VMPQTLEAIKHAKSANVPIVVAINKIDKPG 267 (683)
T ss_pred ------CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC-ccHhHHHHHHHHHhcCCCEEEEEeccCCCC
Confidence 127899999999999999999999999999999999999 999999999997 44556799999763
No 39
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.80 E-value=3.8e-20 Score=169.32 Aligned_cols=114 Identities=29% Similarity=0.497 Sum_probs=94.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++||+|||||||+++|.+...+++++|.++|+|++.++..+.. .
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-----------------------------~--- 48 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-----------------------------P--- 48 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-----------------------------C---
Confidence 36899999999999999999987777888899999999988754221 1
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH-HHhHhccchhhhHH
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL-MATMLNGAAVMDAA 169 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il-~~~~~nk~d~~~~~ 169 (182)
+..++|+|||||++|..++..++..+|++++|||+.+| +.+||++++..+ +. ...++||+|.++..
T Consensus 49 -----~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 49 -----DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE 119 (581)
T ss_pred -----CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH
Confidence 16799999999999999999999999999999999999 899999955322 11 33568999987644
No 40
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=9.4e-20 Score=146.50 Aligned_cols=111 Identities=25% Similarity=0.297 Sum_probs=82.0
Q ss_pred ceEEECCCCCChHHHHhHHhc---CCc-------------------------cchhhHhhhceeeeeccccceeeecCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG---VQT-------------------------VRFKNELERNITIKLGYANAKIYKCDNE 70 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g---~~~-------------------------~~~~~e~~~g~t~~~~~~~~~~~~~~~~ 70 (182)
+|+++||+|||||||+++|+. ... +..+.|+++|+|++.....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--------- 71 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--------- 71 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE---------
Confidence 589999999999999999973 221 2345666677777665421
Q ss_pred CCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc
Q psy1174 71 KCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP 150 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l 150 (182)
+.+.+ ++++++|||||.+|...+..++..+|++|+|||+.+| +..++++++
T Consensus 72 --------------------~~~~~--------~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-~~~~~~~~~ 122 (208)
T cd04166 72 --------------------FSTPK--------RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-VLEQTRRHS 122 (208)
T ss_pred --------------------EecCC--------ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-ccHhHHHHH
Confidence 11222 7899999999999999999999999999999999998 777776533
Q ss_pred hhh----HH-HHhHhccchhhh
Q psy1174 151 GHD----IL-MATMLNGAAVMD 167 (182)
Q Consensus 151 ~~~----il-~~~~~nk~d~~~ 167 (182)
... .. ...++||+|...
T Consensus 123 ~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 123 YILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred HHHHHcCCCcEEEEEEchhccc
Confidence 221 11 223589999763
No 41
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.80 E-value=8.8e-20 Score=168.37 Aligned_cols=116 Identities=23% Similarity=0.269 Sum_probs=89.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc---CCc---------------------------cchhhHhhhceeeeeccccce
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG---VQT---------------------------VRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g---~~~---------------------------~~~~~e~~~g~t~~~~~~~~~ 63 (182)
.++.++|+++||+|||||||+++|+. ... ++.++|++||+|++.++..+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45678899999999999999999982 211 234567777887777653211
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT 143 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~ 143 (182)
+. .++++|+|||||.+|.+++..++..+|+++||||+.+| +.
T Consensus 101 -----------------------------~~--------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g-~~ 142 (632)
T PRK05506 101 -----------------------------TP--------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG-VL 142 (632)
T ss_pred -----------------------------cC--------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-cc
Confidence 12 27899999999999999999999999999999999999 99
Q ss_pred ccccccchhhHH-----HHhHhccchhhh
Q psy1174 144 PEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 144 ~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
.||++++..+.. ...++||+|..+
T Consensus 143 ~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 143 TQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 999985433211 124699999763
No 42
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=7.1e-20 Score=148.38 Aligned_cols=111 Identities=26% Similarity=0.355 Sum_probs=83.5
Q ss_pred ceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeeccccceeeecCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKIYKCDNE 70 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~ 70 (182)
||+++||+|||||||+++|+ |.. .+..+.|++||+|++.....+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~------- 73 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE------- 73 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-------
Confidence 69999999999999999996 321 2345667778887776553321
Q ss_pred CCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC------cccc
Q psy1174 71 KCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA------AKTP 144 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g------~~~~ 144 (182)
+.+ ++++++|||||.+|...+..++..+|++|+|||+.++ +...
T Consensus 74 ----------------------~~~--------~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~ 123 (219)
T cd01883 74 ----------------------TEK--------YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGG 123 (219)
T ss_pred ----------------------eCC--------eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcccccccccc
Confidence 122 7899999999999999999999999999999999984 1566
Q ss_pred cccccchhh-----HHHHhHhccchhh
Q psy1174 145 EIVDCPGHD-----ILMATMLNGAAVM 166 (182)
Q Consensus 145 qt~e~l~~~-----il~~~~~nk~d~~ 166 (182)
|+.+++... .....++||+|..
T Consensus 124 ~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 124 QTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred chHHHHHHHHHcCCCeEEEEEEccccc
Confidence 777644222 1123479999986
No 43
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.5e-20 Score=164.78 Aligned_cols=114 Identities=24% Similarity=0.404 Sum_probs=92.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+++.|++.||+|||||||++.|.+... ......|+|+.++...+.+...
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V---a~~EaGGITQhIGA~~v~~~~~---------------------------- 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV---AAGEAGGITQHIGAYQVPLDVI---------------------------- 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc---ccccCCceeeEeeeEEEEeccC----------------------------
Confidence 345689999999999999999986543 2334588999998754333000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~~~~nk~d~~~ 167 (182)
....++|||||||+.|...+.+|.+.+|.|+||||+++| +.+||.|.++|+- +....+||+|..+
T Consensus 53 ------~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG-v~pQTiEAI~hak~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 53 ------KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG-VMPQTIEAINHAKAAGVPIVVAINKIDKPE 121 (509)
T ss_pred ------CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC-cchhHHHHHHHHHHCCCCEEEEEecccCCC
Confidence 115799999999999999999999999999999999999 9999999999973 3346799999774
No 44
>PRK12739 elongation factor G; Reviewed
Probab=99.80 E-value=3.2e-20 Score=172.81 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=94.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc---C------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG---V------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g---~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
..++||+|+||+|||||||+++|+. . ..|+.+.|++||+|++.....+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---------------- 69 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF---------------- 69 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE----------------
Confidence 4578999999999999999999962 1 23566888999999988775422
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
|.+ ++++|+|||||.+|..++.+++..+|+||+|||+.+| ++.|+++++.++ +.
T Consensus 70 -------------~~~--------~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~~~p 127 (691)
T PRK12739 70 -------------WKG--------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-VEPQSETVWRQADKYGVP 127 (691)
T ss_pred -------------ECC--------EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCCC
Confidence 222 8899999999999999999999999999999999999 999998866543 23
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 128 ~iv~iNK~D~~~ 139 (691)
T PRK12739 128 RIVFVNKMDRIG 139 (691)
T ss_pred EEEEEECCCCCC
Confidence 447799999774
No 45
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.79 E-value=4.2e-20 Score=172.94 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cCC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GVQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
..+|||+|+||+|||||||+++|+ |.. .|+.+.|++||+|+..+...+.. ..
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~-------------- 82 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH-EY-------------- 82 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE-Ee--------------
Confidence 467899999999999999999997 221 45678999999999887643221 00
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~ 157 (182)
. ...++++|||||||.+|..++.++++.+|+||+|||+.+| ++.||+.++.++ +...
T Consensus 83 ------------~------~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g-~~~~t~~~~~~~~~~~~~~i 143 (731)
T PRK07560 83 ------------E------GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG-VMPQTETVLRQALRERVKPV 143 (731)
T ss_pred ------------c------CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC-CCccHHHHHHHHHHcCCCeE
Confidence 0 0127899999999999999999999999999999999999 999999877653 2345
Q ss_pred hHhccchhh
Q psy1174 158 TMLNGAAVM 166 (182)
Q Consensus 158 ~~~nk~d~~ 166 (182)
.++||+|..
T Consensus 144 v~iNK~D~~ 152 (731)
T PRK07560 144 LFINKVDRL 152 (731)
T ss_pred EEEECchhh
Confidence 779999965
No 46
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=1e-19 Score=152.08 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=88.2
Q ss_pred CcceEEECCCCCChHHHHhHHhc---CC----------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG---VQ----------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPAC 77 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g---~~----------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 77 (182)
.|||+++||+|+|||||+++|+. .. .+..+.|++||+++......+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~--------------- 66 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF--------------- 66 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE---------------
Confidence 58999999999999999999972 11 234567888888877765332
Q ss_pred cccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----
Q psy1174 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD---- 153 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~---- 153 (182)
.|.+ ++++++|||||.+|..++..+++.+|++|+|+|+..| +..+++..+...
T Consensus 67 --------------~~~~--------~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g-~~~~~~~i~~~~~~~~ 123 (267)
T cd04169 67 --------------EYRD--------CVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-VEPQTRKLFEVCRLRG 123 (267)
T ss_pred --------------eeCC--------EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC-ccHHHHHHHHHHHhcC
Confidence 1223 7899999999999999999999999999999999998 777776644332
Q ss_pred HHHHhHhccchhhh
Q psy1174 154 ILMATMLNGAAVMD 167 (182)
Q Consensus 154 il~~~~~nk~d~~~ 167 (182)
+....++||+|...
T Consensus 124 ~P~iivvNK~D~~~ 137 (267)
T cd04169 124 IPIITFINKLDREG 137 (267)
T ss_pred CCEEEEEECCccCC
Confidence 33457799999753
No 47
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=1.8e-19 Score=147.01 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=92.5
Q ss_pred ceEEECCCCCChHHHHhHHhcC-----------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV-----------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDD 87 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~-----------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
+|+++|++++|||||+++|... ..+++++|.++|+|....... +.++..+ .+.+|.......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~---~g~~~~~--~~~~~~~~~~~~-- 73 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEI---LGFDSDG--EVVNYPDNHLSE-- 73 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhh---cccCCCC--ceecCCCCcccc--
Confidence 4789999999999999999832 234788999999997543321 2222111 112222111110
Q ss_pred CCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccc--cCCeEEEEEEcCCCcccccccccchhh----HHHHhHhc
Q psy1174 88 SFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAA--VMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLN 161 (182)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~--~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~n 161 (182)
.+....+...+.+++||||||.+|.+++..++. .+|++++|||+..| +..++++++..+ +....++|
T Consensus 74 ------~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g-~~~~d~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 74 ------SDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG-IIGMTKEHLGLALALNIPVFVVVT 146 (224)
T ss_pred ------ccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCEEEEEE
Confidence 000111223488999999999999999999985 89999999999999 889988865443 22346799
Q ss_pred cchhhhH
Q psy1174 162 GAAVMDA 168 (182)
Q Consensus 162 k~d~~~~ 168 (182)
|+|..++
T Consensus 147 K~D~~~~ 153 (224)
T cd04165 147 KIDLAPA 153 (224)
T ss_pred CccccCH
Confidence 9997653
No 48
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.1e-19 Score=149.41 Aligned_cols=110 Identities=24% Similarity=0.260 Sum_probs=87.5
Q ss_pred ceEEECCCCCChHHHHhHHhcC---------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV---------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~---------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
||+++||+|+|||||+++|+.. ..++.+.|++||+|+......+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-------------------- 60 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-------------------- 60 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE--------------------
Confidence 6899999999999999999731 12445678888888877664322
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
+.+ .+++++|||||.+|...+..+++.+|++++|||+.+| +..++++++... +....+
T Consensus 61 ---------~~~--------~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-~~~~~~~~~~~~~~~~~P~iiv 122 (237)
T cd04168 61 ---------WED--------TKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-VQAQTRILWRLLRKLNIPTIIF 122 (237)
T ss_pred ---------ECC--------EEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 122 7899999999999999999999999999999999999 888877755432 344578
Q ss_pred hccchhh
Q psy1174 160 LNGAAVM 166 (182)
Q Consensus 160 ~nk~d~~ 166 (182)
+||+|..
T Consensus 123 vNK~D~~ 129 (237)
T cd04168 123 VNKIDRA 129 (237)
T ss_pred EECcccc
Confidence 9999976
No 49
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.6e-19 Score=154.68 Aligned_cols=110 Identities=35% Similarity=0.574 Sum_probs=95.5
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+..||++||||||+.+|.|...++.++|.+||+|++++++.... .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-----------------------------~---- 48 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-----------------------------E---- 48 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-----------------------------C----
Confidence 4789999999999999999999999999999999999999964221 1
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH--------hHhccchhhhHH
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA--------TMLNGAAVMDAA 169 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~--------~~~nk~d~~~~~ 169 (182)
.+.+.|||.|||++|.++|+.|+...|+|+||||+++| ++.||.| |++.+- ..++|+|..+++
T Consensus 49 ----d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG-l~~qtgE---hL~iLdllgi~~giivltk~D~~d~~ 119 (447)
T COG3276 49 ----DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG-LMAQTGE---HLLILDLLGIKNGIIVLTKADRVDEA 119 (447)
T ss_pred ----CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC-cchhhHH---HHHHHHhcCCCceEEEEeccccccHH
Confidence 16799999999999999999999999999999999999 9999999 544433 338899988654
No 50
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.78 E-value=7.6e-19 Score=155.22 Aligned_cols=117 Identities=29% Similarity=0.408 Sum_probs=88.9
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHh---cCC-------------------------ccchhhHhhhceeeeecccccee
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKI 64 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~---g~~-------------------------~~~~~~e~~~g~t~~~~~~~~~~ 64 (182)
.+++++||+++||+|||||||+++|+ |.. .++.++|+++|+|++..+..+.
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~- 81 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE- 81 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-
Confidence 46788999999999999999999997 322 2345678889999888764321
Q ss_pred eecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc--c
Q psy1174 65 YKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA--K 142 (182)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~--~ 142 (182)
....+++|+|||||.+|..++..++..+|+++||||+.++. .
T Consensus 82 ------------------------------------~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~ 125 (426)
T TIGR00483 82 ------------------------------------TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV 125 (426)
T ss_pred ------------------------------------cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc
Confidence 11278999999999999999999999999999999999873 3
Q ss_pred cccccccchhh-----HHHHhHhccchhh
Q psy1174 143 TPEIVDCPGHD-----ILMATMLNGAAVM 166 (182)
Q Consensus 143 ~~qt~e~l~~~-----il~~~~~nk~d~~ 166 (182)
..|+.+++..+ .....++||+|+.
T Consensus 126 ~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 126 QPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred CCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 45666632111 0122468999986
No 51
>KOG0469|consensus
Probab=99.77 E-value=6.7e-20 Score=162.11 Aligned_cols=132 Identities=22% Similarity=0.225 Sum_probs=98.4
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHh---cC----------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAIS---GV----------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACY 78 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~---g~----------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ 78 (182)
++.+.++|++||.|++||||||.++|. |. ..+..++|.+||+|++....++. |+......+
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~-~e~~~~dl~----- 87 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLF-FEMSDDDLK----- 87 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeeh-hhhhHhHHH-----
Confidence 345677899999999999999999997 22 24566899999999987653322 222111000
Q ss_pred ccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH---
Q psy1174 79 ISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL--- 155 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il--- 155 (182)
...... ......+|+||.|||.+|+.++..+++..|+|++|||+.+| ++.||+.+|++++.
T Consensus 88 -------~~k~~~--------d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G-vCVQTETVLrQA~~ERI 151 (842)
T KOG0469|consen 88 -------FIKQEG--------DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-VCVQTETVLRQAIAERI 151 (842)
T ss_pred -------HhcCCC--------CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc-eEechHHHHHHHHHhhc
Confidence 000011 11237899999999999999999999999999999999999 99999999988754
Q ss_pred -HHhHhccchh
Q psy1174 156 -MATMLNGAAV 165 (182)
Q Consensus 156 -~~~~~nk~d~ 165 (182)
...++||.|-
T Consensus 152 kPvlv~NK~DR 162 (842)
T KOG0469|consen 152 KPVLVMNKMDR 162 (842)
T ss_pred cceEEeehhhH
Confidence 4477999773
No 52
>KOG0461|consensus
Probab=99.77 E-value=8.4e-19 Score=149.56 Aligned_cols=120 Identities=29% Similarity=0.535 Sum_probs=95.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC----ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ----TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~----~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
.+.|++++||+|||||||..+|.... -|+++.+.+||+|.+++++.+.+. .|+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~--------~pa--------------- 62 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVL--------SPA--------------- 62 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecc--------ccc---------------
Confidence 45799999999999999999998322 357788899999999999876651 110
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHH-------HhHhccch
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILM-------ATMLNGAA 164 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~-------~~~~nk~d 164 (182)
+-.+.+..++++||||||..++..++-|+...|.+++|||+..| .+.||.||| ++. +..+||+|
T Consensus 63 -----rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG-~QtQtAEcL---iig~~~c~klvvvinkid 133 (522)
T KOG0461|consen 63 -----RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG-KQTQTAECL---IIGELLCKKLVVVINKID 133 (522)
T ss_pred -----ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc-cccccchhh---hhhhhhccceEEEEeccc
Confidence 00112337899999999999999999999999999999999999 999999944 332 24589998
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+-.
T Consensus 134 ~lp 136 (522)
T KOG0461|consen 134 VLP 136 (522)
T ss_pred ccc
Confidence 653
No 53
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=2.6e-19 Score=162.05 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=92.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC----------------CccchhhHhhhceeeeeccccceeeecCCCCCCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV----------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRP 75 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~----------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 75 (182)
...+||+|+||+|||||||+++|+ |. ..|..+.|++||+|+......+.
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~------------ 75 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP------------ 75 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE------------
Confidence 357899999999999999999996 21 13456788899998877653221
Q ss_pred cccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh--
Q psy1174 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD-- 153 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~-- 153 (182)
|.+ ++++++|||||.+|...+..+++.+|++|+|||+.+| +..+++.++..+
T Consensus 76 -----------------~~~--------~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~ 129 (526)
T PRK00741 76 -----------------YRD--------CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-VEPQTRKLMEVCRL 129 (526)
T ss_pred -----------------ECC--------EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-CCHHHHHHHHHHHh
Confidence 222 7899999999999999999999999999999999999 888887765443
Q ss_pred --HHHHhHhccchhhh
Q psy1174 154 --ILMATMLNGAAVMD 167 (182)
Q Consensus 154 --il~~~~~nk~d~~~ 167 (182)
+...+++||+|...
T Consensus 130 ~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 130 RDTPIFTFINKLDRDG 145 (526)
T ss_pred cCCCEEEEEECCcccc
Confidence 34557899999764
No 54
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.76 E-value=4.9e-19 Score=162.50 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=93.4
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhc---CC---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISG---VQ---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g---~~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
+....+|||+|+||+|||||||+++|+. .. .++.+.|++||+|+......+.. ...
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~-~~~----------- 69 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNY-KAK----------- 69 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEE-Ecc-----------
Confidence 4445689999999999999999999972 21 34567899999999875533211 000
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
....++++|+|||||.+|..++.++++.+|++|+|||+.+| ++.||.+.+..+ +.
T Consensus 70 --------------------dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~~~~~~~lp 128 (600)
T PRK05433 70 --------------------DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENDLE 128 (600)
T ss_pred --------------------CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC
Confidence 01127899999999999999999999999999999999999 888888744221 22
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|+..
T Consensus 129 iIvViNKiDl~~ 140 (600)
T PRK05433 129 IIPVLNKIDLPA 140 (600)
T ss_pred EEEEEECCCCCc
Confidence 346799999753
No 55
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.76 E-value=4.5e-19 Score=165.12 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=92.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
..++||+|+||+|||||||+++|+ |. ..|+.+.|+++|+|++.....+.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~---------------- 71 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF---------------- 71 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE----------------
Confidence 457899999999999999999996 22 12456788999999988764322
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
|.+ ++++++|||||.+|..++..+++.+|++|+|||+.+| +..|+++++.++ +.
T Consensus 72 -------------~~~--------~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p 129 (689)
T TIGR00484 72 -------------WKG--------HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG-VQPQSETVWRQANRYEVP 129 (689)
T ss_pred -------------ECC--------eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC-CChhHHHHHHHHHHcCCC
Confidence 222 7899999999999999999999999999999999999 888888765432 23
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|..+
T Consensus 130 ~ivviNK~D~~~ 141 (689)
T TIGR00484 130 RIAFVNKMDKTG 141 (689)
T ss_pred EEEEEECCCCCC
Confidence 446799999764
No 56
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.75 E-value=8.7e-19 Score=158.74 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=91.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC----------------CccchhhHhhhceeeeeccccceeeecCCCCCCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV----------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRP 75 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~----------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 75 (182)
...+||+|+||+|||||||+++|+ |. ..|..+.|++||+|+......+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~------------- 75 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF------------- 75 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-------------
Confidence 457899999999999999999985 21 1245678889999987765332
Q ss_pred cccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh--
Q psy1174 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD-- 153 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~-- 153 (182)
.|.+ ++++++|||||.+|...+..++..+|++|+|||+..| +..+++.++...
T Consensus 76 ----------------~~~~--------~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~ 130 (527)
T TIGR00503 76 ----------------PYRD--------CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRL 130 (527)
T ss_pred ----------------eeCC--------eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHh
Confidence 1223 7899999999999999999999999999999999999 888887755432
Q ss_pred --HHHHhHhccchhh
Q psy1174 154 --ILMATMLNGAAVM 166 (182)
Q Consensus 154 --il~~~~~nk~d~~ 166 (182)
+...+++||+|..
T Consensus 131 ~~~PiivviNKiD~~ 145 (527)
T TIGR00503 131 RDTPIFTFMNKLDRD 145 (527)
T ss_pred cCCCEEEEEECcccc
Confidence 3455789999975
No 57
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=2.1e-18 Score=136.35 Aligned_cols=126 Identities=26% Similarity=0.440 Sum_probs=89.6
Q ss_pred cceEEECCCCCChHHHHhHHhcC----CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV----QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~----~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+||+++|++|+|||||+++|++. ..++...|.++|+|+...+..+.+... +.. +
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~---~~~------------~------- 58 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKP---KHL------------R------- 58 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccc---ccc------------c-------
Confidence 47999999999999999999862 335667788999999887755443100 000 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
..........+++++|||||.+|...+..++..+|++++|+|+.+| ...++.+.+... .....++||+|..+
T Consensus 59 -~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~-~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 59 -ELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG-IQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred -ccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-ccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 0000011237899999999999999999999999999999999998 766665533211 22346699999763
No 58
>PRK10218 GTP-binding protein; Provisional
Probab=99.74 E-value=1.2e-18 Score=160.02 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc---CC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG---VQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g---~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (182)
.++||+|+||+|||||||+++|+. .. .|..+.|.++|+|+......+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~------------------- 64 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK------------------- 64 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-------------------
Confidence 478999999999999999999983 21 2344567888998877653211
Q ss_pred CCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHh
Q psy1174 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMAT 158 (182)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~ 158 (182)
|.+ ++++++|||||.+|...+..+++.+|++|+|||+.+| ++.||+.++..+ +....
T Consensus 65 ----------~~~--------~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-~~~qt~~~l~~a~~~gip~IV 125 (607)
T PRK10218 65 ----------WND--------YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-PMPQTRFVTKKAFAYGLKPIV 125 (607)
T ss_pred ----------cCC--------EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-ccHHHHHHHHHHHHcCCCEEE
Confidence 222 7899999999999999999999999999999999999 999998866443 22346
Q ss_pred Hhccchhhh
Q psy1174 159 MLNGAAVMD 167 (182)
Q Consensus 159 ~~nk~d~~~ 167 (182)
++||+|..+
T Consensus 126 viNKiD~~~ 134 (607)
T PRK10218 126 VINKVDRPG 134 (607)
T ss_pred EEECcCCCC
Confidence 799999753
No 59
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.73 E-value=1.8e-18 Score=161.75 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=93.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc---C----------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG---V----------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g---~----------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
..++||+++||+|||||||+++|+. . ..+..+.|.+||+|+......... .
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~-~--------------- 80 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH-E--------------- 80 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE-e---------------
Confidence 4578999999999999999999972 1 135567888899998876543211 0
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~ 157 (182)
..+.+ ++++++|||||.+|..++..++..+|++|+|||+.+| +..++++++.++ +...
T Consensus 81 ---------~~~~~--------~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-~~~~t~~~~~~~~~~~~p~i 142 (720)
T TIGR00490 81 ---------YEGNE--------YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-VMPQTETVLRQALKENVKPV 142 (720)
T ss_pred ---------ecCCc--------eEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-CCccHHHHHHHHHHcCCCEE
Confidence 11222 7899999999999999999999999999999999999 899998866553 2334
Q ss_pred hHhccchhh
Q psy1174 158 TMLNGAAVM 166 (182)
Q Consensus 158 ~~~nk~d~~ 166 (182)
.++||+|..
T Consensus 143 vviNKiD~~ 151 (720)
T TIGR00490 143 LFINKVDRL 151 (720)
T ss_pred EEEEChhcc
Confidence 779999975
No 60
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=2.6e-18 Score=138.34 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=84.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC----------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ----------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~----------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
|||+++||+|+|||||+++|+... .++.+.|.++|+++......+.....
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-------------- 66 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-------------- 66 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC--------------
Confidence 589999999999999999998321 23456677888887665432211000
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~ 157 (182)
......++++|||||.+|...+..++..+|++++|+|+.++ ...++++++... +...
T Consensus 67 ------------------~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~~~~~~~~~~~~~~~p~i 127 (213)
T cd04167 67 ------------------KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG-VTSNTERLIRHAILEGLPIV 127 (213)
T ss_pred ------------------CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEE
Confidence 01127899999999999999999999999999999999988 666665533332 2234
Q ss_pred hHhccchhh
Q psy1174 158 TMLNGAAVM 166 (182)
Q Consensus 158 ~~~nk~d~~ 166 (182)
.++||+|..
T Consensus 128 iviNK~D~~ 136 (213)
T cd04167 128 LVINKIDRL 136 (213)
T ss_pred EEEECcccC
Confidence 679999964
No 61
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.73 E-value=2.8e-18 Score=157.37 Aligned_cols=119 Identities=21% Similarity=0.220 Sum_probs=90.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC---C---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV---Q---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~---~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
.+|||+++||+|||||||+++|+.. . .++.+.|+++|+|+......+.. ...
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~-~~~--------------- 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNY-KAK--------------- 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEE-EcC---------------
Confidence 4789999999999999999999732 1 24557789999998875533221 000
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
. ...++++|+|||||.+|...+.++++.+|++|+|+|+.+| ++.|+.+++..+ +....+
T Consensus 66 ----------~------g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~~~~~~ipiIiV 128 (595)
T TIGR01393 66 ----------D------GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYLALENDLEIIPV 128 (595)
T ss_pred ----------C------CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHHHHHcCCCEEEE
Confidence 0 0126899999999999999999999999999999999999 888887744221 223467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 129 iNKiDl~~ 136 (595)
T TIGR01393 129 INKIDLPS 136 (595)
T ss_pred EECcCCCc
Confidence 99999753
No 62
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1.1e-17 Score=126.89 Aligned_cols=113 Identities=35% Similarity=0.591 Sum_probs=84.7
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++|+|||||+++|.+...+.+..+.++++|+...+....+ .
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------------~---- 48 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL-----------------------------P---- 48 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe-----------------------------c----
Confidence 6899999999999999999976555555565677777766532211 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----H-HHHhHhccchhhhH
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----I-LMATMLNGAAVMDA 168 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----i-l~~~~~nk~d~~~~ 168 (182)
....+.++||||+.+|...+..+++.+|++++|+|+.++ ...++.+.+... . ....++||+|+...
T Consensus 49 ---~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~-~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 49 ---SGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG-IMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred ---CCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC-ccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 016799999999999998888899999999999999987 666766643211 1 23456999998643
No 63
>KOG0467|consensus
Probab=99.72 E-value=2.3e-18 Score=157.58 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=93.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHh---cCC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAIS---GVQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~---g~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
...++|++++.|+|||||||.++|+ |.. .|...+|..||+|.+.+.-+ +.+
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is---~~~------------- 69 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS---LLH------------- 69 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc---ccc-------------
Confidence 4567899999999999999999997 322 24557888999999876632 000
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----H
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----M 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~ 156 (182)
..+.+|+||+|||.||..++.+++..+|+|+++||+.+| +..||..+++++.. .
T Consensus 70 ---------------------~~~~~nlidspghvdf~sevssas~l~d~alvlvdvveg-v~~qt~~vlrq~~~~~~~~ 127 (887)
T KOG0467|consen 70 ---------------------KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEG-VCSQTYAVLRQAWIEGLKP 127 (887)
T ss_pred ---------------------CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccc-cchhHHHHHHHHHHccCce
Confidence 128899999999999999999999999999999999999 99999988877633 3
Q ss_pred HhHhccch
Q psy1174 157 ATMLNGAA 164 (182)
Q Consensus 157 ~~~~nk~d 164 (182)
...+||+|
T Consensus 128 ~lvinkid 135 (887)
T KOG0467|consen 128 ILVINKID 135 (887)
T ss_pred EEEEehhh
Confidence 35599999
No 64
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=6.4e-18 Score=158.62 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=88.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+|+||+|||||||+++|.+... .....+|+|..++...+. +.+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v---~~~e~~GIT~~iga~~v~-----------------------------~~~ 336 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV---AAGEAGGITQHIGAYQVE-----------------------------TNG 336 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc---cccccCceeeeccEEEEE-----------------------------ECC
Confidence 456799999999999999999985322 222346777776653211 112
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
++++|+|||||.+|...+.+++..+|++|||||+.+| +..||.+++.|+ +..+.++||+|..+
T Consensus 337 --------~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG-v~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 337 --------GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG-VMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred --------EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC-CCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 6899999999999999999999999999999999999 999999988765 34557799999754
No 65
>KOG0468|consensus
Probab=99.70 E-value=1.2e-17 Score=151.38 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=97.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC--------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ--------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~--------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
-..+||+++||-.||||+|+++|.... ++....|.+||.+++....++-+-..
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~------------- 192 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS------------- 192 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC-------------
Confidence 356799999999999999999998432 34567899999999987755443111
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----H
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----M 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~ 156 (182)
....+-++++|||||.+|+.++..+++.+|+|+||||+.+| +.-+|+..++|++. .
T Consensus 193 -------------------~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG-VmlntEr~ikhaiq~~~~i 252 (971)
T KOG0468|consen 193 -------------------KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEG-VMLNTERIIKHAIQNRLPI 252 (971)
T ss_pred -------------------cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccC-ceeeHHHHHHHHHhccCcE
Confidence 11237899999999999999999999999999999999999 99999999999865 3
Q ss_pred HhHhccchhh
Q psy1174 157 ATMLNGAAVM 166 (182)
Q Consensus 157 ~~~~nk~d~~ 166 (182)
.+.+||+|..
T Consensus 253 ~vviNKiDRL 262 (971)
T KOG0468|consen 253 VVVINKVDRL 262 (971)
T ss_pred EEEEehhHHH
Confidence 4669999843
No 66
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.69 E-value=1.8e-17 Score=151.82 Aligned_cols=111 Identities=22% Similarity=0.412 Sum_probs=86.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++||+|||||||+++|.+... .....+|+|+..+...+.. .+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v---~~~e~~GIT~~ig~~~v~~-----------------------------~~ 133 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV---AQGEAGGITQHIGAYHVEN-----------------------------ED 133 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc---ccccCCceeecceEEEEEE-----------------------------CC
Confidence 346799999999999999999986432 2233467777766532211 00
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~ 166 (182)
..+++|+|||||.+|...+.+++..+|+++||||+.+| +.+||.+++.++ ++...++||+|..
T Consensus 134 -------~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-v~~qT~e~i~~~~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 134 -------GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-VMPQTIEAISHAKAANVPIIVAINKIDKP 200 (587)
T ss_pred -------CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-CCHhHHHHHHHHHHcCCCEEEEEECcccc
Confidence 13799999999999999999999999999999999999 999999977664 2345679999975
No 67
>KOG0464|consensus
Probab=99.69 E-value=6.2e-18 Score=147.22 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=97.3
Q ss_pred CCcceEEECCCCCChHHHHhHHh---cCC------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS---GVQ------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~---g~~------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
.++||+|+.|+++||||..+.|+ |.. ++....|++||+|++....+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~------------------- 96 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVN------------------- 96 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeee-------------------
Confidence 46899999999999999999986 221 23456899999999886632
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch----hhHHH
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILM 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~ 156 (182)
..|.+ +++++||||||.+|.-++.+.++..|+++.|+|+..| +++||..+.+ |.+++
T Consensus 97 ----------fdwkg--------~rinlidtpghvdf~leverclrvldgavav~dasag-ve~qtltvwrqadk~~ip~ 157 (753)
T KOG0464|consen 97 ----------FDWKG--------HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG-VEAQTLTVWRQADKFKIPA 157 (753)
T ss_pred ----------ccccc--------ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC-cccceeeeehhccccCCch
Confidence 34666 9999999999999999999999999999999999999 9999987775 44889
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
.+|+||.|...
T Consensus 158 ~~finkmdk~~ 168 (753)
T KOG0464|consen 158 HCFINKMDKLA 168 (753)
T ss_pred hhhhhhhhhhh
Confidence 99999999653
No 68
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=2.1e-17 Score=154.11 Aligned_cols=115 Identities=24% Similarity=0.406 Sum_probs=87.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++||+|||||||+++|.+... .....+|+|..++...+.+ .. .
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~---~~~e~~GiTq~i~~~~v~~-~~--------------------------~- 291 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI---AQKEAGGITQKIGAYEVEF-EY--------------------------K- 291 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC---ccccCCccccccceEEEEE-Ee--------------------------c-
Confidence 457899999999999999999985432 1223467777665432211 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
.....++|+|||||..|...+.+++..+|++|||||+.+| +.+||.+++.++ ++...++||+|...
T Consensus 292 -----~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-v~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 292 -----DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-VKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred -----CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-CChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 0127899999999999999999999999999999999999 999999977664 33457799999764
No 69
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=3.5e-17 Score=126.72 Aligned_cols=116 Identities=21% Similarity=0.217 Sum_probs=80.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCC------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNK 85 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
+||+++|++++|||||+++|++.. .++...+.++|++.......+.+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~-------------------- 60 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYK-------------------- 60 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEe--------------------
Confidence 689999999999999999998521 123345566777665433211110
Q ss_pred CCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhc
Q psy1174 86 DDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLN 161 (182)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~n 161 (182)
.. ......++++||||+.+|...+..++..+|++|+|+|+.++ ...++.+.+.. .+....++|
T Consensus 61 ---------~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~~~~~~~~~iiiv~N 127 (179)
T cd01890 61 ---------AK---DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG-VEAQTLANFYLALENNLEIIPVIN 127 (179)
T ss_pred ---------cC---CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHHHHHHcCCCEEEEEE
Confidence 00 01126789999999999999999999999999999999987 55555443221 122346799
Q ss_pred cchhh
Q psy1174 162 GAAVM 166 (182)
Q Consensus 162 k~d~~ 166 (182)
|+|+.
T Consensus 128 K~Dl~ 132 (179)
T cd01890 128 KIDLP 132 (179)
T ss_pred CCCCC
Confidence 99975
No 70
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=2.6e-17 Score=137.05 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=82.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCC---------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~---------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
||+++||+|+|||||+++|+... .+..+.+.++++++......+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~--------------------- 59 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL--------------------- 59 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE---------------------
Confidence 68999999999999999997321 123445666666665433211
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
.|.+ ++++++||||+.+|...+..++..+|++++|+|+..| ...++...+.+. +....+
T Consensus 60 --------~~~~--------~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g-~~~~~~~~~~~~~~~~~p~iiv 122 (268)
T cd04170 60 --------EWKG--------HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG-VEVGTEKLWEFADEAGIPRIIF 122 (268)
T ss_pred --------EECC--------EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 1122 7899999999999999999999999999999999998 777776644322 334467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|...
T Consensus 123 vNK~D~~~ 130 (268)
T cd04170 123 INKMDRER 130 (268)
T ss_pred EECCccCC
Confidence 99999664
No 71
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=2.3e-17 Score=153.64 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=90.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc---C------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG---V------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g---~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
..++||+|+||+|+|||||+++|+. . ..+..+.|+++++|+......+.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~---------------- 69 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD---------------- 69 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE----------------
Confidence 3578999999999999999999972 1 12345677788888877664321
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
|.+ .+++++|||||.+|...+..++..+|++++|+|+.+| ++.++++.+.++ +.
T Consensus 70 -------------~~~--------~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~-~~~~~~~~~~~~~~~~~p 127 (687)
T PRK13351 70 -------------WDN--------HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG-VQPQTETVWRQADRYGIP 127 (687)
T ss_pred -------------ECC--------EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCC
Confidence 122 7899999999999999999999999999999999998 888877655432 33
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 128 ~iiviNK~D~~~ 139 (687)
T PRK13351 128 RLIFINKMDRVG 139 (687)
T ss_pred EEEEEECCCCCC
Confidence 446799999774
No 72
>KOG0465|consensus
Probab=99.65 E-value=7.4e-18 Score=151.53 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=97.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
...+||+++.|.+|||||+.+..+ |. ..+....|++||+|++.....
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~------------------ 98 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATY------------------ 98 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceee------------------
Confidence 467899999999999999999886 21 134678899999999886632
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
+.|.. +++|+||||||.+|-.++.++++..|+|++|+|+..| ++.||..+.+++ ++
T Consensus 99 -----------~~w~~--------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~ry~vP 158 (721)
T KOG0465|consen 99 -----------FTWRD--------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKRYNVP 158 (721)
T ss_pred -----------eeecc--------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHhcCCC
Confidence 23443 8999999999999999999999999999999999999 999998877664 45
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
..+|+||.|.++
T Consensus 159 ~i~FiNKmDRmG 170 (721)
T KOG0465|consen 159 RICFINKMDRMG 170 (721)
T ss_pred eEEEEehhhhcC
Confidence 668999999875
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=1.7e-16 Score=125.63 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=79.0
Q ss_pred CcceEEECCCCCChHHHHhHHhc---CCcc----------chhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG---VQTV----------RFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g---~~~~----------~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
+++|+++|++++|||||+++|+. .... ..+.+..+|++.......+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~--------------------- 60 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV--------------------- 60 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---------------------
Confidence 57999999999999999999984 2211 1122344454443322110
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~ 159 (182)
. ....+++++||||+.+|...+...++.+|++++|+|+.++ ...++++.+.. .+....+
T Consensus 61 --------~--------~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~~~p~iiv 123 (194)
T cd01891 61 --------T--------YKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALELGLKPIVV 123 (194)
T ss_pred --------E--------ECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHcCCCEEEE
Confidence 0 1127899999999999999999999999999999999987 66666553322 2334566
Q ss_pred hccchhh
Q psy1174 160 LNGAAVM 166 (182)
Q Consensus 160 ~nk~d~~ 166 (182)
+||+|+.
T Consensus 124 ~NK~Dl~ 130 (194)
T cd01891 124 INKIDRP 130 (194)
T ss_pred EECCCCC
Confidence 9999975
No 74
>COG1159 Era GTPase [General function prediction only]
Probab=99.64 E-value=2.5e-16 Score=132.08 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=76.4
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..-|+|+|++|+|||||+|+|+|.- +++.... ++++|+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~K-----------isIvS~k-----------------------------~QTTR~~I 45 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQK-----------ISIVSPK-----------------------------PQTTRNRI 45 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCc-----------eEeecCC-----------------------------cchhhhhe
Confidence 4568999999999999999999842 2332222 22222222
Q ss_pred CCcc-cccceEEEeeCCChh--------HHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccc
Q psy1174 97 TGRF-QLVRHVSFVDCPGHD--------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGA 163 (182)
Q Consensus 97 ~~~~-~~~~~i~lIDtPGh~--------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~ 163 (182)
..-. .+..++.|+||||.. ...+....++..+|++++|||+.++ .....+..+... ......+||+
T Consensus 46 ~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~-~~~~d~~il~~lk~~~~pvil~iNKI 124 (298)
T COG1159 46 RGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG-WGPGDEFILEQLKKTKTPVILVVNKI 124 (298)
T ss_pred eEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc-CCccHHHHHHHHhhcCCCeEEEEEcc
Confidence 2222 334899999999952 3555677788999999999999997 655555444332 2344669999
Q ss_pred hhhhHHH
Q psy1174 164 AVMDAAL 170 (182)
Q Consensus 164 d~~~~~~ 170 (182)
|....+.
T Consensus 125 D~~~~~~ 131 (298)
T COG1159 125 DKVKPKT 131 (298)
T ss_pred ccCCcHH
Confidence 9776443
No 75
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.63 E-value=1e-16 Score=138.29 Aligned_cols=140 Identities=24% Similarity=0.311 Sum_probs=100.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHh-cCC----------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS-GVQ----------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~-g~~----------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
.++.+|++.||+|||||||+++|. |.. .+..++|.++|.|.++++. +|.++.++-.+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~---v~Gf~dgk~~r--------- 182 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLR---VYGFDDGKVVR--------- 182 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEE---EEEecCCceEe---------
Confidence 467899999999999999999997 433 2367899999999998774 35554322110
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhcc--ccCCeEEEEEEcCCCcccccccccchhhH----HHH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGA--AVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMA 157 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~--~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~ 157 (182)
-.++-.+-..........+-+.|+||-||+.|..+.++|+ ++.|+.+|+|.|++| ++..|+|||+-++ +.+
T Consensus 183 --lknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG-~~~~tkEHLgi~~a~~lPvi 259 (527)
T COG5258 183 --LKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG-VTKMTKEHLGIALAMELPVI 259 (527)
T ss_pred --ecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC-cchhhhHhhhhhhhhcCCEE
Confidence 0000000000000112237899999999999999999999 899999999999999 9999999775432 233
Q ss_pred hHhccchhhhHH
Q psy1174 158 TMLNGAAVMDAA 169 (182)
Q Consensus 158 ~~~nk~d~~~~~ 169 (182)
..++|+|+.+.+
T Consensus 260 VvvTK~D~~~dd 271 (527)
T COG5258 260 VVVTKIDMVPDD 271 (527)
T ss_pred EEEEecccCcHH
Confidence 568999987644
No 76
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.60 E-value=8e-16 Score=141.03 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=82.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
++.|+++||+|||||||+++|.+.... .....++|..++.+.+.. .. . ....+.... . +.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~---~~~~g~itq~ig~~~~~~-~~----~-----~~~~~~~~~-~----~~-- 65 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA---AKEAGGITQHIGATEVPI-DV----I-----EKIAGPLKK-P----LP-- 65 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc---cCCCCceEEeeceeeccc-cc----c-----ccccceecc-c----cc--
Confidence 456999999999999999999865321 222355666665431110 00 0 000000000 0 00
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVM 166 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~ 166 (182)
.......++|+|||||.+|...+.++++.+|++++|||+.+| +..|+.+++.+. +....++||+|..
T Consensus 66 --~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 66 --IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-FQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred --cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-CCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 000002389999999999999999999999999999999999 899999866543 2234679999975
No 77
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.58 E-value=1.4e-15 Score=139.42 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=83.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.+.|+++||+|||||||+++|.+... .....+++|..++...+...... ...+.. ......
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v---~~~e~ggiTq~iG~~~v~~~~~~----------~~~~~~-~~~~~v----- 64 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV---AKREAGGITQHIGATEIPMDVIE----------GICGDL-LKKFKI----- 64 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc---ccccCCceecccCeeEeeecccc----------cccccc-cccccc-----
Confidence 45699999999999999999997532 11223556666555321110000 000000 000000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
......+.|+|||||++|...+..+++.+|++++|+|+.+| +..|+.+++.+. +....++||+|...
T Consensus 65 ---~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 65 ---RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-FKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred ---ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-CCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 00012489999999999999999999999999999999999 888998866543 23446799999863
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.58 E-value=2.2e-15 Score=116.65 Aligned_cols=111 Identities=30% Similarity=0.450 Sum_probs=78.2
Q ss_pred ceEEECCCCCChHHHHhHHhcCCcc-------------chhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTV-------------RFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNK 85 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~-------------~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
+|+++|.+|+|||||+++|++.... ....+.+++.+..........
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 59 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--------------------- 59 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---------------------
Confidence 5899999999999999999854321 122344455554433211110
Q ss_pred CCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhc
Q psy1174 86 DDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLN 161 (182)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~n 161 (182)
....+.++||||+.+|......++..+|++++|+|+..+ ...+.++.+.+. .....++|
T Consensus 60 ----------------~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~i~iv~n 122 (189)
T cd00881 60 ----------------PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG-VQPQTREHLRIAREGGLPIIVAIN 122 (189)
T ss_pred ----------------CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC-CcHHHHHHHHHHHHCCCCeEEEEE
Confidence 126799999999999999889999999999999999988 555555543332 22346799
Q ss_pred cchhhh
Q psy1174 162 GAAVMD 167 (182)
Q Consensus 162 k~d~~~ 167 (182)
|+|...
T Consensus 123 K~D~~~ 128 (189)
T cd00881 123 KIDRVG 128 (189)
T ss_pred CCCCcc
Confidence 999764
No 79
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=2.9e-15 Score=139.11 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=83.5
Q ss_pred ECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCC
Q psy1174 23 IGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDD 87 (182)
Q Consensus 23 iG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
+||+|||||||+++|+ |. ..|+.+.|++||+|+......+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~------------------------ 56 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE------------------------ 56 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE------------------------
Confidence 6999999999999995 32 23456788899999987664322
Q ss_pred CCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccc
Q psy1174 88 SFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGA 163 (182)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~ 163 (182)
|.+ +.+++||||||.+|...+..++..+|++++|||+.++ ...++..++..+ +....++||+
T Consensus 57 -----~~~--------~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 57 -----WKG--------HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG-VEPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred -----ECC--------EEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC-cCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 122 7899999999999999999999999999999999998 777776644332 2344679999
Q ss_pred hhh
Q psy1174 164 AVM 166 (182)
Q Consensus 164 d~~ 166 (182)
|..
T Consensus 123 D~~ 125 (668)
T PRK12740 123 DRA 125 (668)
T ss_pred CCC
Confidence 976
No 80
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=5.9e-15 Score=112.59 Aligned_cols=111 Identities=23% Similarity=0.392 Sum_probs=75.3
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|++|+|||||+++|.+... .....++.|.......... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~---~~~~~~~~t~~~~~~~~~~-----------------------------~~--- 46 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV---AAGEAGGITQHIGAFEVPA-----------------------------EV--- 46 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc---ccccCCCeEEeeccEEEec-----------------------------cc---
Confidence 589999999999999999985321 1112234444443211110 00
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
.....++++||||+..|...+..++..+|++++|+|+.++ ...++.+.+... +....++||+|+.+
T Consensus 47 --~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 47 --LKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG-VMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred --CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC-ccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 0126799999999999988888888999999999999987 666665543321 22345689999763
No 81
>KOG0459|consensus
Probab=99.49 E-value=3.8e-15 Score=129.10 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=82.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cCCcc-------------------------chhhHhhhceeeeeccccceeee
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GVQTV-------------------------RFKNELERNITIKLGYANAKIYK 66 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~~~~-------------------------~~~~e~~~g~t~~~~~~~~~~~~ 66 (182)
+.+.|+.++||+++||||.-+.|+ |..+. +..+|+++|-|+..+.+
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA------ 150 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA------ 150 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE------
Confidence 678899999999999999999887 33221 12233333333333222
Q ss_pred cCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-----
Q psy1174 67 CDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----- 141 (182)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----- 141 (182)
-++++.++++++|+|||..|..+|+.|+.+||.++|||+|..|+
T Consensus 151 -------------------------------~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgF 199 (501)
T KOG0459|consen 151 -------------------------------YFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 199 (501)
T ss_pred -------------------------------EEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccc
Confidence 23355689999999999999999999999999999999998765
Q ss_pred -ccccccccchhhHHHHh--------Hhccchh
Q psy1174 142 -KTPEIVDCPGHDILMAT--------MLNGAAV 165 (182)
Q Consensus 142 -~~~qt~e~l~~~il~~~--------~~nk~d~ 165 (182)
.-+||+| |+.|+.+ ++||.|-
T Consensus 200 erGgQTRE---ha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 200 EKGGQTRE---HAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred ccccchhH---HHHHHHhhccceEEEEEEeccC
Confidence 4569999 8877664 4777763
No 82
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.44 E-value=7.3e-14 Score=122.89 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=79.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.|+|+|++|.|||||+|+|+|.... -.+...|+|.+..|... .|.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A--IV~D~pGvTRDr~y~~~-----------------------------~~~~-- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA--IVSDTPGVTRDRIYGDA-----------------------------EWLG-- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee--EeecCCCCccCCcccee-----------------------------EEcC--
Confidence 56999999999999999999975321 11223666766666432 2344
Q ss_pred CcccccceEEEeeCCChhH---------HHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccch
Q psy1174 98 GRFQLVRHVSFVDCPGHDI---------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAA 164 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~---------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d 164 (182)
+.|.+|||+|... .......++..||++|+|||+.+| +.++.+++-.++ ...+..+||+|
T Consensus 51 ------~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G-it~~D~~ia~~Lr~~~kpviLvvNK~D 123 (444)
T COG1160 51 ------REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG-ITPADEEIAKILRRSKKPVILVVNKID 123 (444)
T ss_pred ------ceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCCEEEEEEccc
Confidence 7799999999752 334567778999999999999999 888877644332 22335599999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
-.+
T Consensus 124 ~~~ 126 (444)
T COG1160 124 NLK 126 (444)
T ss_pred Cch
Confidence 653
No 83
>KOG1144|consensus
Probab=99.44 E-value=3.5e-14 Score=130.27 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=87.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.+.+||+||+|+|||-|++.|.+.+. +.....|+|.+++.+.+.+ ++- . -.......+......
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNV---qegeaggitqqIgAt~fp~---~ni----~--e~tk~~~~~~K~~~k--- 538 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNV---QEGEAGGITQQIGATYFPA---ENI----R--EKTKELKKDAKKRLK--- 538 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccc---ccccccceeeeccccccch---HHH----H--HHHHHHHhhhhhhcC---
Confidence 334589999999999999999987643 4556688999887753222 100 0 000000000000000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH----HHhHhccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----MATMLNGAAV 165 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----~~~~~nk~d~ 165 (182)
.--+.+||||||+.|..-+.+|++.+|.||||||...| +.+||.|.|+.+.. -+..+||+|-
T Consensus 539 -------vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-lepqtiESi~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 539 -------VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-LEPQTIESINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred -------CCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc-CCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence 12388999999999999999999999999999999999 99999998866422 2245899983
No 84
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.42 E-value=2.2e-13 Score=113.70 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=64.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|++|+|||||+|+|++..... .....+.|..... .+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--vs~~~~TTr~~i~---~i---------------------------------- 42 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--TSPKAQTTRNRIS---GI---------------------------------- 42 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--cCCCCCcccCcEE---EE----------------------------------
Confidence 48999999999999999999742110 0001111111000 00
Q ss_pred cccccceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccch----hhHHHHhHhccchhh
Q psy1174 99 RFQLVRHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~~~~~nk~d~~ 166 (182)
......++.|+||||+.. +...+..++..+|++++|+|+..+ ...+ +..+. .......++||+|+.
T Consensus 43 ~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~-~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 43 HTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW-NGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC-CchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 001126799999999642 233455677899999999999986 3332 21111 112334669999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 121 ~ 121 (270)
T TIGR00436 121 F 121 (270)
T ss_pred C
Confidence 4
No 85
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.40 E-value=1.6e-13 Score=104.85 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=45.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccccc----ch----hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDC----PG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~----l~----~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|.......+..+|++++|+|+.+.......... +. ..+....++||+|...
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 7899999999999998878888999999999999865211111111 11 1234456799999754
No 86
>KOG0463|consensus
Probab=99.39 E-value=1.1e-13 Score=119.75 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=96.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCc-----------cchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQT-----------VRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKD 86 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~-----------~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
.+|+|+|.+++|||||++.|..... -++++|.|.|.|.+.+...+- |...+..-+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILG--------------FD~~GNvVN 199 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILG--------------FDVHGNVVN 199 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCcccccccccee--------------ecccccccc
Confidence 4799999999999999999984332 268899999988876543211 222222111
Q ss_pred --CCC--cccCCCCCCcccccceEEEeeCCChhHHHHHHHhcc--ccCCeEEEEEEcCCCcccccccccchhhH----HH
Q psy1174 87 --DSF--PCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGA--AVMDAALLLIGCDNAAKTPEIVDCPGHDI----LM 156 (182)
Q Consensus 87 --~~~--~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~--~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~ 156 (182)
+.. ..+|..+.+ .+...++|||-.||+.|.++..-|+ ...|+.+|+|.|+.| +.++|+|||+.++ ++
T Consensus 200 KPD~Hg~~LdWvkIce--~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALaL~VPV 276 (641)
T KOG0463|consen 200 KPDPHGHNLDWVKICE--DSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALALHVPV 276 (641)
T ss_pred CCCCCCCcccceeecc--ccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhhhcCcE
Confidence 111 122332222 2236799999999999999999988 789999999999999 9999999887653 34
Q ss_pred HhHhccchhhhHH
Q psy1174 157 ATMLNGAAVMDAA 169 (182)
Q Consensus 157 ~~~~nk~d~~~~~ 169 (182)
+..+.|||+-.+.
T Consensus 277 fvVVTKIDMCPAN 289 (641)
T KOG0463|consen 277 FVVVTKIDMCPAN 289 (641)
T ss_pred EEEEEeeccCcHH
Confidence 4668999976433
No 87
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=5e-13 Score=118.05 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|++.... ......|.|.+.....+.
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~--~~~~~~gtt~~~~~~~~~------------------------------- 217 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV--IVSDIAGTTRDSIDTPFE------------------------------- 217 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCceEEEEEEEEE-------------------------------
Confidence 34678999999999999999999974311 112234455443221100
Q ss_pred CCCCcccccceEEEeeCCChh----------HHH-HHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHD----------ILM-ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~----------~f~-~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
..+..+.++||||+. .|. .....++..+|++|+|+|+.+| ...|..+.+.++ .....+
T Consensus 218 ------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~-~~~~~~~i~~~~~~~~~~~ivv 290 (435)
T PRK00093 218 ------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG-ITEQDLRIAGLALEAGRALVIV 290 (435)
T ss_pred ------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCcEEEE
Confidence 112679999999963 222 2345678899999999999999 777776644332 234467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 291 ~NK~Dl~~ 298 (435)
T PRK00093 291 VNKWDLVD 298 (435)
T ss_pred EECccCCC
Confidence 99999864
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=2.3e-13 Score=102.18 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=44.7
Q ss_pred ceEEEeeCCChhHHHH--------HHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchhhhH
Q psy1174 104 RHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAVMDA 168 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~--------~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~~~~ 168 (182)
..+.++||||+.++.. .....+..+|++++|+|+..+ ......+++.. ......++||+|....
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG-LTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc-CCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 6799999999977433 445667889999999999876 44444332221 1334567999997753
No 89
>PRK00089 era GTPase Era; Reviewed
Probab=99.38 E-value=6.4e-13 Score=111.62 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=43.4
Q ss_pred ceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~ 166 (182)
.++.|+||||..+ +......++..+|++++|+|+.++ ......+++... .....++||+|+.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~-~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK-IGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 6899999999632 334556677899999999999985 444444333221 2344668999987
No 90
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=4.2e-13 Score=118.16 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=72.0
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|++|+|||||+++|++.... ..+...|+|.+..+.. ..+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~t~d~~~~~-----------------------------~~~~~--- 46 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA--IVSDTPGVTRDRKYGD-----------------------------AEWGG--- 46 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc--eecCCCCcccCceEEE-----------------------------EEECC---
Confidence 3899999999999999999874311 0111133333332211 11122
Q ss_pred cccccceEEEeeCCCh--------hHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchhh
Q psy1174 99 RFQLVRHVSFVDCPGH--------DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh--------~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~~ 166 (182)
..+.++||||+ ..+...+..++..+|++++|+|+.+| ......++... ....+..+||+|..
T Consensus 47 -----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~-~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 -----REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG-LTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred -----eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 67999999997 45666677788999999999999998 66655442221 12234569999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 121 ~ 121 (429)
T TIGR03594 121 K 121 (429)
T ss_pred c
Confidence 4
No 91
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=9.8e-13 Score=103.50 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=79.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCcc-------chhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTV-------RFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDD 87 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~-------~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
.....|+|+|+.++||||++++++..... ......+|..|+...+-...++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---------------------- 65 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---------------------- 65 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc----------------------
Confidence 44457999999999999999999844321 0011113446776666443331
Q ss_pred CCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch---hh--HHHHhHhcc
Q psy1174 88 SFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG---HD--ILMATMLNG 162 (182)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~---~~--il~~~~~nk 162 (182)
+.+.+.++|||||.+|...+...++.++++|++||++++ +....++.++ +. +....+.||
T Consensus 66 --------------~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~-~~~~a~~ii~f~~~~~~ip~vVa~NK 130 (187)
T COG2229 66 --------------EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP-ITFHAEEIIDFLTSRNPIPVVVAINK 130 (187)
T ss_pred --------------CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC-cchHHHHHHHHHhhccCCCEEEEeec
Confidence 126799999999999999888889999999999999998 4331122111 11 233456889
Q ss_pred chhhhH
Q psy1174 163 AAVMDA 168 (182)
Q Consensus 163 ~d~~~~ 168 (182)
+|+.+.
T Consensus 131 ~DL~~a 136 (187)
T COG2229 131 QDLFDA 136 (187)
T ss_pred cccCCC
Confidence 988864
No 92
>PRK15494 era GTPase Era; Provisional
Probab=99.36 E-value=6.3e-13 Score=114.63 Aligned_cols=114 Identities=19% Similarity=0.132 Sum_probs=68.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+....+|+++|++|+|||||+++|++..... ...+.+.|...... +
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~i--vs~k~~tTr~~~~~---~----------------------------- 94 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSI--VTPKVQTTRSIITG---I----------------------------- 94 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceee--ccCCCCCccCcEEE---E-----------------------------
Confidence 3455689999999999999999998742110 00011111111000 0
Q ss_pred CCCCCcccccceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhc
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLN 161 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~n 161 (182)
....+.++.|+||||... +......++..+|++++|||+.++ +....+..+.. ......++|
T Consensus 95 -----~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s-~~~~~~~il~~l~~~~~p~IlViN 168 (339)
T PRK15494 95 -----ITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS-FDDITHNILDKLRSLNIVPIFLLN 168 (339)
T ss_pred -----EEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCCCEEEEEE
Confidence 001126899999999732 333344567899999999999876 54443332221 112335689
Q ss_pred cchhhh
Q psy1174 162 GAAVMD 167 (182)
Q Consensus 162 k~d~~~ 167 (182)
|+|+.+
T Consensus 169 KiDl~~ 174 (339)
T PRK15494 169 KIDIES 174 (339)
T ss_pred hhcCcc
Confidence 999764
No 93
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.36 E-value=9.1e-13 Score=102.97 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCccccccCCCcceEEECCCCCChHHHHhHHhcCC-ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCC
Q psy1174 6 TLQSNWVSNEISSYPGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSN 84 (182)
Q Consensus 6 ~~~~~~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~-~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
..-+..+.+....+|+++|++|+|||||+++|.+.. .. ......+.|....+ |..
T Consensus 7 ~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~-----~~~----------------- 62 (179)
T TIGR03598 7 AVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGRTQLINF-----FEV----------------- 62 (179)
T ss_pred eccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCcceEEEE-----EEe-----------------
Confidence 344556666777899999999999999999998642 11 00111222222211 100
Q ss_pred CCCCCcccCCCCCCcccccceEEEeeCCChh----------HHHHHH---HhccccCCeEEEEEEcCCCcccccccccch
Q psy1174 85 KDDSFPCLRSSCTGRFQLVRHVSFVDCPGHD----------ILMATM---LNGAAVMDAALLLIGCDNAAKTPEIVDCPG 151 (182)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~----------~f~~~~---~~~~~~aD~ailVVda~~g~~~~qt~e~l~ 151 (182)
...+.++||||+. .|...+ .+....+|++++|+|+..+ +..++.+.++
T Consensus 63 ------------------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-~~~~~~~~~~ 123 (179)
T TIGR03598 63 ------------------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP-LKELDLEMLE 123 (179)
T ss_pred ------------------CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC-CCHHHHHHHH
Confidence 0358999999952 333322 2333457899999999987 6665554332
Q ss_pred hh----HHHHhHhccchhhh
Q psy1174 152 HD----ILMATMLNGAAVMD 167 (182)
Q Consensus 152 ~~----il~~~~~nk~d~~~ 167 (182)
.. .....++||+|.++
T Consensus 124 ~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 124 WLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHcCCCEEEEEECcccCC
Confidence 21 23346689999864
No 94
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.35 E-value=7.4e-13 Score=102.15 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=63.8
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++|+|||||+++|.|.... ...+....+ ..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~----------------------------------~~--- 38 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEF----------------------------------ND--- 38 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEE----------------------------------CC---
Confidence 5999999999999999999874311 001111111 00
Q ss_pred cccccceEEEeeCCCh----hHHHHHHHhccccCCeEEEEEEcCCCcccccccccch--hhHHHHhHhccchhhh
Q psy1174 99 RFQLVRHVSFVDCPGH----DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG--HDILMATMLNGAAVMD 167 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh----~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~--~~il~~~~~nk~d~~~ 167 (182)
. .++||||. .++...+..++..+|++++|+|+.++ ........+. .......++||+|+.+
T Consensus 39 -----~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~-~s~~~~~~~~~~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 39 -----K--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDP-ESRLPAGLLDIGVSKRQIAVISKTDMPD 105 (158)
T ss_pred -----C--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCc-ccccCHHHHhccCCCCeEEEEEccccCc
Confidence 1 26999996 56777788889999999999999987 3323222111 1122346799999754
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=5.4e-13 Score=117.44 Aligned_cols=111 Identities=18% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++.... ......|.|.+.....+ .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~--~~~~~~gtt~~~~~~~~-----------------------------~--- 216 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERV--IVSDIAGTTRDSIDIPF-----------------------------E--- 216 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCee--ecCCCCCceECcEeEEE-----------------------------E---
Confidence 4568999999999999999999974311 01112333333211100 0
Q ss_pred CCCcccccceEEEeeCCChhHH----------H-HHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDIL----------M-ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f----------~-~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
..+..+.++||||+.++ . .....++..+|++|+|+|+.+| ...++.+.+.++ .....++
T Consensus 217 -----~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-~~~~~~~~~~~~~~~~~~iiiv~ 290 (429)
T TIGR03594 217 -----RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-ITEQDLRIAGLILEAGKALVIVV 290 (429)
T ss_pred -----ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHHHHcCCcEEEEE
Confidence 11257999999997432 2 1234577899999999999998 777776644433 3345679
Q ss_pred ccchhh
Q psy1174 161 NGAAVM 166 (182)
Q Consensus 161 nk~d~~ 166 (182)
||+|+.
T Consensus 291 NK~Dl~ 296 (429)
T TIGR03594 291 NKWDLV 296 (429)
T ss_pred ECcccC
Confidence 999986
No 96
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.33 E-value=1.6e-12 Score=98.62 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.++|+++|++|+|||||+++|++..... .+..++.+...... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~-----------------------------~~----- 45 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--VSDIAGTTRDSIDV-----------------------------PF----- 45 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--ccCCCCCccCceee-----------------------------EE-----
Confidence 4679999999999999999998642100 00011111111000 00
Q ss_pred CCcccccceEEEeeCCChhHH----------H-HHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhc
Q psy1174 97 TGRFQLVRHVSFVDCPGHDIL----------M-ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLN 161 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f----------~-~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~n 161 (182)
......+.++||||+.+. . ......+..+|++++|+|+..+ ...+....+.. ......++|
T Consensus 46 ---~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv~n 121 (174)
T cd01895 46 ---EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEG-ITEQDLRIAGLILEEGKALVIVVN 121 (174)
T ss_pred ---EECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCC-cchhHHHHHHHHHhcCCCEEEEEe
Confidence 011256899999997432 1 1234556889999999999987 44433322211 122345689
Q ss_pred cchhhhH
Q psy1174 162 GAAVMDA 168 (182)
Q Consensus 162 k~d~~~~ 168 (182)
|+|+.+.
T Consensus 122 K~Dl~~~ 128 (174)
T cd01895 122 KWDLVEK 128 (174)
T ss_pred ccccCCc
Confidence 9997653
No 97
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.32 E-value=9.7e-13 Score=100.59 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=51.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++|+|||||+++|.+.... .....+.|.......+. ..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~-----------------------------~~~--- 46 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVR-----------------------------VDD--- 46 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEE-----------------------------cCC---
Confidence 6899999999999999999863210 00001111111100000 000
Q ss_pred cccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..++.++||||+. .+.....+.+..+|++++|+|+..+
T Consensus 47 ----~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 47 ----GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGD 91 (170)
T ss_pred ----CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCC
Confidence 1379999999973 2334445566779999999999876
No 98
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.32 E-value=1.3e-12 Score=99.96 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=68.4
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.++|+++|+.|+|||||+++|.+.... .+.......+.....+.+ .
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~-- 48 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS---ERQGNTIGVDFTMKTLEI-----------------------------E-- 48 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc---ccCCCccceEEEEEEEEE-----------------------------C--
Confidence 478999999999999999999742210 010011111111100000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch-------hhHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++++|+|+.+.. .-+. +..+. ..++...+.||+|+..
T Consensus 49 ----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 49 ----GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS-SFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred ----CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH-HHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 01146899999999999887777788999999999999862 1111 11111 1233446699999763
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=7.3e-13 Score=116.62 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
.++.|+|||++|+|||||+|+|+|+... -.+...|.|.+.-.. ..+|.+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~--Iv~~~aGTTRD~I~~-----------------------------~~e~~~ 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERV--IVSDIAGTTRDSIDI-----------------------------EFERDG 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceE--EecCCCCccccceee-----------------------------eEEECC
Confidence 4688999999999999999999986421 111123444433221 112233
Q ss_pred CCCcccccceEEEeeCCChhH----------HH-HHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDI----------LM-ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~----------f~-~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
+++.+|||.|..+ |. .....++..||+++||+||.+| +..|.....+++ .....++
T Consensus 226 --------~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~-~~~qD~~ia~~i~~~g~~~vIvv 296 (444)
T COG1160 226 --------RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG-ISEQDLRIAGLIEEAGRGIVIVV 296 (444)
T ss_pred --------eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC-chHHHHHHHHHHHHcCCCeEEEE
Confidence 8999999999642 22 2356778999999999999999 888888755543 2234669
Q ss_pred ccchhhhH
Q psy1174 161 NGAAVMDA 168 (182)
Q Consensus 161 nk~d~~~~ 168 (182)
||.|.+..
T Consensus 297 NKWDl~~~ 304 (444)
T COG1160 297 NKWDLVEE 304 (444)
T ss_pred EccccCCc
Confidence 99997654
No 100
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.31 E-value=2.1e-12 Score=96.45 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=62.0
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++|+|||||+++|.+.... ...|+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-------~~~t~~~~---------------------------------------- 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-------YKKTQAVE---------------------------------------- 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-------cccceeEE----------------------------------------
Confidence 5899999999999999999864210 00111111
Q ss_pred cccccceEEEeeCCChh----HHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-hHHHHhHhccchhhh
Q psy1174 99 RFQLVRHVSFVDCPGHD----ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-DILMATMLNGAAVMD 167 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~----~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-~il~~~~~nk~d~~~ 167 (182)
..-.++||||.. .+...+...+..+|++++|+|+.++ ...+..+.+.. ......++||+|+..
T Consensus 35 -----~~~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~-~s~~~~~~~~~~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 35 -----YNDGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDP-ESRFPPGFASIFVKPVIGLVTKIDLAE 102 (142)
T ss_pred -----EcCeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCC-CcCCChhHHHhccCCeEEEEEeeccCC
Confidence 112679999973 4445555668999999999999987 44433332211 013345689999753
No 101
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.30 E-value=8.1e-13 Score=102.48 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=62.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|.+|+|||||+|+|+|... +...-.|.|+......+.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~---~v~n~pG~Tv~~~~g~~~~--------------------------------- 44 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ---KVGNWPGTTVEKKEGIFKL--------------------------------- 44 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE---EEEESTTSSSEEEEEEEEE---------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---eecCCCCCCeeeeeEEEEe---------------------------------
Confidence 3689999999999999999998541 1111244454433221111
Q ss_pred CcccccceEEEeeCCChhHHH-----HHH-Hhc--cccCCeEEEEEEcCCCccc-ccccccchhhHHHHhHhccchhhhH
Q psy1174 98 GRFQLVRHVSFVDCPGHDILM-----ATM-LNG--AAVMDAALLLIGCDNAAKT-PEIVDCPGHDILMATMLNGAAVMDA 168 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~-----~~~-~~~--~~~aD~ailVVda~~g~~~-~qt~e~l~~~il~~~~~nk~d~~~~ 168 (182)
....+.++|+||.-++. ..+ ... ....|++++|+||..-+.. ..+.+.+.+.+++...+||+|...+
T Consensus 45 ----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 45 ----GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp ----TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred ----cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 12789999999942211 011 111 3689999999999853100 0112222244555577999997753
No 102
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.29 E-value=3.6e-12 Score=97.35 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=65.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|.+||++++|||||+++|.+.... ...|..+.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-------~~KTq~i~~-------------------------------------- 36 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-------YKKTQAIEY-------------------------------------- 36 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-------cCccceeEe--------------------------------------
Confidence 35899999999999999999874322 222333332
Q ss_pred CcccccceEEEeeCCC----hhHHHHHHHhccccCCeEEEEEEcCCCc--ccccccccchhhHHHHhHhccchhh
Q psy1174 98 GRFQLVRHVSFVDCPG----HDILMATMLNGAAVMDAALLLIGCDNAA--KTPEIVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPG----h~~f~~~~~~~~~~aD~ailVVda~~g~--~~~qt~e~l~~~il~~~~~nk~d~~ 166 (182)
.=.+||||| +..|...++..+..||.+++|.||.+.. .-+.....+ ...+.-.++|+|+.
T Consensus 37 -------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f--~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 37 -------YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF--NKPVIGVITKIDLP 102 (143)
T ss_pred -------cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc--CCCEEEEEECccCc
Confidence 125699999 4688889999999999999999999861 111111111 12334559999988
No 103
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.29 E-value=3.6e-12 Score=96.55 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=45.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc----ccccccch------hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT----PEIVDCPG------HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~----~qt~e~l~------~~il~~~~~nk~d~~~ 167 (182)
.++.++||||+.+|...+...+..+|++|+|+|+.+..-. .+..+.+. ..+....++||+|+.+
T Consensus 45 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 6799999999999988777888999999999999875200 01111111 2244556799999764
No 104
>KOG1143|consensus
Probab=99.29 E-value=3.9e-13 Score=116.13 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=95.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCcc-----------chhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTV-----------RFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKD 86 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~-----------~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
.+|+|+|..|+|||||++.|.....| +|.+|.+.|.|..++.-. ..+++..... +.+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~ev---lGFd~~g~vV---------NY~ 235 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEV---LGFDNRGKVV---------NYA 235 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhc---cccccccccc---------chh
Confidence 47999999999999999999844332 678999999888776532 2222222111 112
Q ss_pred CCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhcc--ccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 87 DSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGA--AVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~--~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
++...+ ...+.+.+-++|||-.||.+|.++.+.|+ .-.|+|+|||+|+.| +..-|+|||+.. ++.+.++
T Consensus 236 ~~~taE----Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G-i~~tTrEHLgl~~AL~iPfFvlv 310 (591)
T KOG1143|consen 236 QNMTAE----EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG-ITWTTREHLGLIAALNIPFFVLV 310 (591)
T ss_pred hcccHH----HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC-CccccHHHHHHHHHhCCCeEEEE
Confidence 221110 00112347899999999999999999998 678999999999999 999999977543 3344678
Q ss_pred ccchhhhH
Q psy1174 161 NGAAVMDA 168 (182)
Q Consensus 161 nk~d~~~~ 168 (182)
.|+|+.+.
T Consensus 311 tK~Dl~~~ 318 (591)
T KOG1143|consen 311 TKMDLVDR 318 (591)
T ss_pred Eeeccccc
Confidence 99998864
No 105
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.28 E-value=1.8e-12 Score=97.06 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=65.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++|+|||||+++|.+..... .....+.+....... ..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~-----------------------------~~----- 45 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI--VSDIAGTTRDVIEES-----------------------------ID----- 45 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe--ccCCCCCccceEEEE-----------------------------EE-----
Confidence 468999999999999999998642110 000112222111100 00
Q ss_pred CcccccceEEEeeCCChhHHHH--------HHHhccccCCeEEEEEEcCCCcccccccccch--hhHHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG--HDILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~--------~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~--~~il~~~~~nk~d~~~ 167 (182)
....+++++||||+.++.. .....+..+|++++|+|+... ........+. .......++||+|..+
T Consensus 46 ---~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 46 ---IGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG-LDEEDLEILELPADKPIIVVLNKSDLLP 121 (157)
T ss_pred ---eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC-CCHHHHHHHHhhcCCCEEEEEEchhcCC
Confidence 0126799999999865432 244566899999999999965 2221111111 2234456699999875
Q ss_pred H
Q psy1174 168 A 168 (182)
Q Consensus 168 ~ 168 (182)
.
T Consensus 122 ~ 122 (157)
T cd04164 122 D 122 (157)
T ss_pred c
Confidence 3
No 106
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.28 E-value=3e-12 Score=97.03 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++|+|||||+++|.+.... ......++.......+.+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~--- 45 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS---EQYKSTIGVDFKTKTIEV-----------------------------D--- 45 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEE-----------------------------C---
Confidence 36899999999999999999864321 000111111111100000 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccc----h---hhHHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCP----G---HDILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l----~---~~il~~~~~nk~d~~~ 167 (182)
....++.++||||+..|.......+..+|++++|+|+.+.. .-+.. ..+ . ..++.+.+.||+|...
T Consensus 46 ---~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 46 ---GKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE-SFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred ---CEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 01156889999999999988888889999999999998752 11111 011 1 1245557789999653
No 107
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=4.5e-12 Score=103.39 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.++..|+++|++|+|||||+++|.+........ ...|. + .++ .
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~-i-------~i~--------------------------~-- 79 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGP-I-------TVV--------------------------T-- 79 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-ccccc-E-------EEE--------------------------e--
Confidence 456779999999999999999998642110000 01110 0 000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH-hHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA-TMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~-~~~nk~d~~ 166 (182)
....+++++||||+. ..+...+..+|++++|+|+..| +..++.+++... +... .++||+|..
T Consensus 80 ------~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~-~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 ------GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG-FEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ------cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC-CCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 012789999999964 5567778999999999999998 777666544322 1122 378999975
No 108
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.28 E-value=2.8e-12 Score=97.32 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.++||||+.+|...+...+..+|++++|+|+.+.
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 86 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDR 86 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 5688999999999988777888999999999999875
No 109
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.28 E-value=3.2e-12 Score=112.92 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.|+++|++|+|||||+++|++..... .....|.|.+..+.. ..+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~--v~~~~~~t~d~~~~~-----------------------------~~~~~-- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI--VADTPGVTRDRIYGE-----------------------------AEWLG-- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--eCCCCCCcccceEEE-----------------------------EEECC--
Confidence 468999999999999999998643110 011123332222211 01112
Q ss_pred CcccccceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchh
Q psy1174 98 GRFQLVRHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAV 165 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~ 165 (182)
..+.++||||+.+ +......++..+|++|+|||+.++ ......+.... ......++||+|.
T Consensus 49 ------~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~~~piilv~NK~D~ 121 (435)
T PRK00093 49 ------REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG-LTPADEEIAKILRKSNKPVILVVNKVDG 121 (435)
T ss_pred ------cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 6799999999976 333345677899999999999987 55443332211 1334466999996
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 122 ~~ 123 (435)
T PRK00093 122 PD 123 (435)
T ss_pred cc
Confidence 54
No 110
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=3.9e-12 Score=98.87 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|+.++|||||+++|....... ...|+...+...
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~------~~~t~~~~~~~~-------------------------------- 54 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH------TSPTIGSNVEEI-------------------------------- 54 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC------cCCccccceEEE--------------------------------
Confidence 345789999999999999999997422100 011111111000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccc----ccccchh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPE----IVDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~q----t~e~l~~----~il~~~~~nk~d~~ 166 (182)
......+.++||||+..|.......+..+|++++|+|+.+..-... ..+.+.+ .+....++||+|+.
T Consensus 55 -----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 55 -----VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred -----EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 0112679999999999998887788899999999999987521111 1111211 13445679999975
No 111
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=4.5e-12 Score=113.64 Aligned_cols=111 Identities=18% Similarity=0.103 Sum_probs=70.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.++|+|+|++|+|||||+++|++.... ..+...|+|.+..+... .+.+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~--~v~~~~gvT~d~~~~~~-----------------------------~~~~- 85 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA--VVEDVPGVTRDRVSYDA-----------------------------EWNG- 85 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc--cccCCCCCCEeeEEEEE-----------------------------EECC-
Confidence 357999999999999999999964211 11123344443322111 1112
Q ss_pred CCcccccceEEEeeCCChh--------HHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccch
Q psy1174 97 TGRFQLVRHVSFVDCPGHD--------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAA 164 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~--------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d 164 (182)
..+.++||||+. .+...+..++..||++|+|+|+.++ ......++... ....+.++||+|
T Consensus 86 -------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~-~s~~~~~i~~~l~~~~~piilV~NK~D 157 (472)
T PRK03003 86 -------RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG-ATATDEAVARVLRRSGKPVILAANKVD 157 (472)
T ss_pred -------cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 678999999975 3444556678899999999999988 43332222211 133446699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
...
T Consensus 158 l~~ 160 (472)
T PRK03003 158 DER 160 (472)
T ss_pred CCc
Confidence 753
No 112
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.27 E-value=3.8e-12 Score=96.46 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=67.7
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++++|||||+++|++.... .+...+.+.+.....+.+ .
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~---- 45 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD---NQYQATIGIDFLSKTMYL-----------------------------E---- 45 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---ccCCCceeeeEEEEEEEE-----------------------------C----
Confidence 6899999999999999999864321 111122222211100000 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhh
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVM 166 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~ 166 (182)
....++.++||||+..|...+...+..+|++++|+|+.++.-..+....+.+ .+....++||+|+.
T Consensus 46 --~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 46 --DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred --CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 0115689999999999988888888999999999999875201111111111 12344568999983
No 113
>KOG1423|consensus
Probab=99.26 E-value=1.1e-11 Score=104.76 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=72.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+...++|+|||.+|+|||||.|.++|.... ...++-..|...... + +
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~--~vS~K~~TTr~~ilg----------------------i-------~-- 115 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS--AVSRKVHTTRHRILG----------------------I-------I-- 115 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccc--cccccccceeeeeeE----------------------E-------E--
Confidence 456789999999999999999999975321 001111111111000 0 0
Q ss_pred CCCCCcccccceEEEeeCCCh------------hHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-----hHHH
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGH------------DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-----DILM 156 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh------------~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-----~il~ 156 (182)
.....++.|+||||- ..+..+...++..||.+++|+|+..- .....-.+|.. .+..
T Consensus 116 ------ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t-r~~l~p~vl~~l~~ys~ips 188 (379)
T KOG1423|consen 116 ------TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT-RTPLHPRVLHMLEEYSKIPS 188 (379)
T ss_pred ------ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCC-cCccChHHHHHHHHHhcCCc
Confidence 012289999999993 23445667788999999999999953 11111111110 1333
Q ss_pred HhHhccchhhhHHHHhhh
Q psy1174 157 ATMLNGAAVMDAALLLIG 174 (182)
Q Consensus 157 ~~~~nk~d~~~~~~~~~~ 174 (182)
+..+||+|......++.+
T Consensus 189 ~lvmnkid~~k~k~~Ll~ 206 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLN 206 (379)
T ss_pred eeeccchhcchhhhHHhh
Confidence 456999997764444443
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.25 E-value=1.8e-11 Score=91.16 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=67.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++++|||||+++|.+...... ..+ |....+....+ .. .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~---~~~--t~~~~~~~~~~-~~------------------------~----- 45 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN---YKS--TIGVDFKSKTI-EI------------------------D----- 45 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc---cCC--ceeeeeEEEEE-EE------------------------C-----
Confidence 3689999999999999999985432110 001 11111110000 00 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----hhh---HHHHhHhccchhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----GHD---ILMATMLNGAAVM 166 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~~~---il~~~~~nk~d~~ 166 (182)
.....+.++|+||+..|.......+..+|++++|+|+.+..-.......+ ... ...+.++||+|..
T Consensus 46 ---~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 46 ---GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred ---CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 01267899999999999988888889999999999998741011111111 111 3444568999975
No 115
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.25 E-value=6.3e-12 Score=93.80 Aligned_cols=64 Identities=8% Similarity=0.016 Sum_probs=44.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh--------hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--------DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--------~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|...+...+..+|++++|+|+.+.....+.++.+.. .+....++||+|..+
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 5689999999999998888888999999999999864111111111111 122334689999764
No 116
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.24 E-value=1.8e-12 Score=95.78 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=62.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++|+|||||+++|.+... ..+..++.+.......+.. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~-----------------------------~--- 46 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF---ITEYKPGTTRNYVTTVIEE-----------------------------D--- 46 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---cCcCCCCceeeeeEEEEEE-----------------------------C---
Confidence 5799999999999999999986431 1121222222221110000 0
Q ss_pred CcccccceEEEeeCCChhHHHH-------HHHhccccCCeEEEEEEcCCCcccccccccchh---hHHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMA-------TMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH---DILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~-------~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~---~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.. .....+...|.+++|+++..+ ...+......+ .+....++||.|+..
T Consensus 47 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 47 ---GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEI-LEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred ---CEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhH-hHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 0015688999999988743 344444555666666666554 22222221111 234456789999765
No 117
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.24 E-value=6.8e-12 Score=95.90 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=32.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+..|.......++.+|++|+|+|+.+.
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP 85 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH
Confidence 5678999999999998777788999999999999876
No 118
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.24 E-value=7e-12 Score=100.56 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=33.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccC-CeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVM-DAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~a-D~ailVVda~~g 140 (182)
..+.++|||||.+|...+...+..+ +++|+|||+...
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF 85 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc
Confidence 6799999999999998888888888 999999999975
No 119
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.23 E-value=7.1e-12 Score=95.24 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccc-------hhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCP-------GHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l-------~~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+.+|.......+..+|++++|+|+.++. ..+. .+.+ ...+......||+|+..
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRT-SFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 56899999999999887777789999999999999862 1111 1111 11233445589999753
No 120
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=7.7e-12 Score=95.64 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|+.|+|||||+++|++.... ...+.++...+....+ .. .
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~-----~~~~~t~~~~~~~~~~-~~--------------------------~ 52 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP-----PGQGATIGVDFMIKTV-EI--------------------------K 52 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCC-----CCCCCceeeEEEEEEE-EE--------------------------C
Confidence 34578999999999999999999842210 0122222211110000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccc-cccc---c----hhhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPE-IVDC---P----GHDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~q-t~e~---l----~~~il~~~~~nk~d~~ 166 (182)
+ ....+.+.||||+..|.......+..+|++++|+|+..+ ...+ ..+. + ...++...+.||+|+.
T Consensus 53 ~------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 G------EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE-ESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred C------EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 0 114578899999999998888888999999999999875 2110 0011 1 1123334668999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 126 ~ 126 (169)
T cd04114 126 E 126 (169)
T ss_pred c
Confidence 3
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.23 E-value=1e-11 Score=111.30 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... ..+...|.|.+.....+ .+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~-----------------------------~~~- 257 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLI-----------------------------ELG- 257 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEE-----------------------------EEC-
Confidence 3578999999999999999999974311 11112333332211100 011
Q ss_pred CCCcccccceEEEeeCCCh----------hHHHHH-HHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGH----------DILMAT-MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh----------~~f~~~-~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
+..+.++||||. +.|... ...++..+|++++|+|+.++ ...+....+.+. .....++
T Consensus 258 -------~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~-~s~~~~~~~~~~~~~~~piIiV~ 329 (472)
T PRK03003 258 -------GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEP-ISEQDQRVLSMVIEAGRALVLAF 329 (472)
T ss_pred -------CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEEE
Confidence 267889999995 333322 13456899999999999998 655554433222 2244669
Q ss_pred ccchhhh
Q psy1174 161 NGAAVMD 167 (182)
Q Consensus 161 nk~d~~~ 167 (182)
||+|+.+
T Consensus 330 NK~Dl~~ 336 (472)
T PRK03003 330 NKWDLVD 336 (472)
T ss_pred ECcccCC
Confidence 9999864
No 122
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.22 E-value=1.9e-12 Score=97.55 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred EECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCccc
Q psy1174 22 TIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQ 101 (182)
Q Consensus 22 viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
++|++|+|||||+++|.+... ......+.|.......+. +
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~~~~~~~~t~~~~~~~~~-----------------------------~-------- 40 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---KVGNWPGVTVEKKEGRFK-----------------------------L-------- 40 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---cccCCCCcccccceEEEe-----------------------------e--------
Confidence 589999999999999987421 111123333332221110 1
Q ss_pred ccceEEEeeCCChhHHHHH------HHhcc--ccCCeEEEEEEcCCCccccc-c-cccchhhHHHHhHhccchhhhH
Q psy1174 102 LVRHVSFVDCPGHDILMAT------MLNGA--AVMDAALLLIGCDNAAKTPE-I-VDCPGHDILMATMLNGAAVMDA 168 (182)
Q Consensus 102 ~~~~i~lIDtPGh~~f~~~------~~~~~--~~aD~ailVVda~~g~~~~q-t-~e~l~~~il~~~~~nk~d~~~~ 168 (182)
.+..+.++||||+.+|... ....+ ..+|++++|+|+... .... . .++.........++||+|+.+.
T Consensus 41 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 41 GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL-ERNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc-hhHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 1257899999998765421 11222 589999999999864 1110 0 0111122345577999998653
No 123
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.22 E-value=8.4e-12 Score=96.56 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=68.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++++|||||+++|.+..... ...|+......+.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~------~~~t~g~~~~~~~------------------------------- 54 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT------ISPTLGFQIKTLE------------------------------- 54 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC------cCCccccceEEEE-------------------------------
Confidence 345679999999999999999998642110 0001110000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~----~~il~~~~~nk~d~~ 166 (182)
....++.++||||+..|.......+..+|++++|+|+.+....... .+.+. ..+....++||+|+.
T Consensus 55 ------~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 55 ------YEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 0126789999999998887777778899999999999875211111 11111 113344668999975
No 124
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.22 E-value=3.3e-11 Score=90.32 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=41.1
Q ss_pred ceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~ 166 (182)
..+.++||||... +.......+..+|++++|+|+..+ ............ .....++||+|..
T Consensus 51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred eEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 5689999999743 333445567899999999999976 333322222111 2334678999977
No 125
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.21 E-value=1.3e-11 Score=95.46 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=45.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----hh----hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----GH----DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~~----~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|.......+..+|++|+|+|+.+.......++.+ .+ ..+...+.||+|+.+
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 43 YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 67999999999999887777889999999999998742111111111 11 234456799999765
No 126
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.21 E-value=9.4e-12 Score=94.70 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=32.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|.......+..+|++++|+|+...
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 84 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR 84 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCH
Confidence 5788999999999988777788999999999999874
No 127
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.21 E-value=1.3e-11 Score=93.62 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=66.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|+.++|||||+++|++...... .....+.+... ..+.+ .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~--~~v~~-----------------------------~--- 46 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN-QESTIGAAFLT--QTVNL-----------------------------D--- 46 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEE--EEEEE-----------------------------C---
Confidence 4689999999999999999986432110 00001110100 00000 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-------hhHHHHhHhccchhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-------HDILMATMLNGAAVM 166 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-------~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+.+|.......++.+|++++|+|+....-..+....+. ..+..+.+.||+|..
T Consensus 47 ---~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 47 ---DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred ---CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 012578899999999988877667788999999999987521111111111 112234557999976
No 128
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.21 E-value=2.2e-11 Score=114.17 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=74.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|++.... ..+...|+|.+..+.. ..+.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~--iv~~~pGvT~d~~~~~-----------------------------~~~~ 321 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREA--VVEDTPGVTRDRVSYD-----------------------------AEWA 321 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCeeEEEEEEE-----------------------------EEEC
Confidence 34467999999999999999999864211 1112245554432211 0111
Q ss_pred CCCCcccccceEEEeeCCChh--------HHHHHHHhccccCCeEEEEEEcCCCcccccccccch----hhHHHHhHhcc
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHD--------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILMATMLNG 162 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~--------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~~~~~nk 162 (182)
+..+.++||||.. .|...+..++..+|++|+|+|+.+| +.....+... +......++||
T Consensus 322 --------~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~~~~pvIlV~NK 392 (712)
T PRK09518 322 --------GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG-LTSTDERIVRMLRRAGKPVVLAVNK 392 (712)
T ss_pred --------CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCCCEEEEEEC
Confidence 2679999999964 3566667788999999999999988 6554443222 22344567999
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|...
T Consensus 393 ~D~~~ 397 (712)
T PRK09518 393 IDDQA 397 (712)
T ss_pred ccccc
Confidence 99754
No 129
>KOG0052|consensus
Probab=99.21 E-value=2.5e-12 Score=111.39 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=53.8
Q ss_pred cccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc------ccccccccchhhHHHHhH--------hccchhh
Q psy1174 101 QLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA------KTPEIVDCPGHDILMATM--------LNGAAVM 166 (182)
Q Consensus 101 ~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~------~~~qt~e~l~~~il~~~~--------~nk~d~~ 166 (182)
+..+.+++||.|||.+|.++|+.+.++||.++++|.+..|+ ..+||+| |++|+++| +||.|-+
T Consensus 79 t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~e---halla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 79 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE---HALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred ceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhh---hhhhhccccceeeeEEeeccccc
Confidence 34478999999999999999999999999999999995543 5679999 99999988 5777754
No 130
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.20 E-value=1.5e-11 Score=94.21 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=44.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh------hHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH------DILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~------~il~~~~~nk~d~~ 166 (182)
..+.+.||||+..|.......+..+|++|+|+|+.++ ...+. .+.+.. .+....+.||+|+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK-ITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 5788999999999998877888999999999999876 22111 111100 13445679999974
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.19 E-value=4.4e-11 Score=94.94 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++|++|+|||||+++|++.... .....+.|.......+. .
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~---~~~~~~~t~~~~~~~~~-----------------------------~-- 85 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY---AEDQLFATLDPTTRRLR-----------------------------L-- 85 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc---cCCccceeccceeEEEE-----------------------------e--
Confidence 4578999999999999999999864210 00001111111100000 0
Q ss_pred CCCcccccceEEEeeCCChh---------HHHHHHHhccccCCeEEEEEEcCCCccccccc---ccch----hhHHHHhH
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD---------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIV---DCPG----HDILMATM 159 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~---------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~---e~l~----~~il~~~~ 159 (182)
.....+.++||||+. .|.. ....+..+|++++|+|+..+....+.. +.+. .......+
T Consensus 86 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV 159 (204)
T cd01878 86 -----PDGREVLLTDTVGFIRDLPHQLVEAFRS-TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILV 159 (204)
T ss_pred -----cCCceEEEeCCCccccCCCHHHHHHHHH-HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEE
Confidence 011379999999982 2322 233457899999999998762121111 1111 11234566
Q ss_pred hccchhhhHH
Q psy1174 160 LNGAAVMDAA 169 (182)
Q Consensus 160 ~nk~d~~~~~ 169 (182)
+||+|.....
T Consensus 160 ~NK~Dl~~~~ 169 (204)
T cd01878 160 LNKIDLLDDE 169 (204)
T ss_pred EEccccCChH
Confidence 9999976533
No 132
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.19 E-value=2.3e-11 Score=94.28 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=67.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|+.++|||||+.+|...... . ...|+...+.. +
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~----~--~~~t~g~~~~~--~------------------------------- 48 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV----T--TIPTVGFNVET--V------------------------------- 48 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc----c--ccCCcccceEE--E-------------------------------
Confidence 4578999999999999999999742110 0 00011110000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-cc---ccccccchh----hHHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KT---PEIVDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~---~qt~e~l~~----~il~~~~~nk~d~~ 166 (182)
......+.+.||||+.+|.......+..+|++|+|+|+.+.. .. .+..+.+.. .++...+.||+|+.
T Consensus 49 ----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 49 ----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 001267999999999999876666779999999999998741 11 111111111 13455679999975
No 133
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=1.4e-11 Score=110.03 Aligned_cols=112 Identities=16% Similarity=0.070 Sum_probs=68.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++.... ......|.|.+.....+. ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a--~v~~~~gtT~d~~~~~i~-----------------------------~~- 261 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA--IVTDIAGTTRDVIEEHIN-----------------------------LD- 261 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcccccEEEEEE-----------------------------EC-
Confidence 3468999999999999999999874211 001112333222111100 01
Q ss_pred CCCcccccceEEEeeCCChhHHHH--------HHHhccccCCeEEEEEEcCCCcccccccccch--hhHHHHhHhccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG--HDILMATMLNGAAV 165 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~--------~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~--~~il~~~~~nk~d~ 165 (182)
+..+.++||||+.++.. .....+..+|++++|+|+..+ ...+..+.+. .......++||+|+
T Consensus 262 -------g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~-~s~~~~~~l~~~~~~piiiV~NK~DL 333 (449)
T PRK05291 262 -------GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP-LTEEDDEILEELKDKPVIVVLNKADL 333 (449)
T ss_pred -------CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC-CChhHHHHHHhcCCCCcEEEEEhhhc
Confidence 26799999999865322 233457889999999999876 3322222111 12344567999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 334 ~~ 335 (449)
T PRK05291 334 TG 335 (449)
T ss_pred cc
Confidence 64
No 134
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.18 E-value=1.2e-11 Score=116.75 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+|+|+|... +.....|.|++.....+ .+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve~k~g~~-----------------------------~~~-- 48 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVERKEGQF-----------------------------STT-- 48 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEeeEEEEE-----------------------------EcC--
Confidence 45799999999999999999997532 11222555554322110 011
Q ss_pred CCcccccceEEEeeCCChhHHHH--------HHHh----ccccCCeEEEEEEcCCCcccc-cccccchhhHHHHhHhccc
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMA--------TMLN----GAAVMDAALLLIGCDNAAKTP-EIVDCPGHDILMATMLNGA 163 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~--------~~~~----~~~~aD~ailVVda~~g~~~~-qt~e~l~~~il~~~~~nk~ 163 (182)
+.+++++||||+.+|.. +.+. ....+|++++|+|+...+... .+.+...+.+.....+||+
T Consensus 49 ------~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~ 122 (772)
T PRK09554 49 ------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122 (772)
T ss_pred ------ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEch
Confidence 26899999999977642 1111 124789999999998762111 1112222345566779999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|...
T Consensus 123 Dl~~ 126 (772)
T PRK09554 123 DIAE 126 (772)
T ss_pred hhhh
Confidence 9763
No 135
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.18 E-value=4.2e-11 Score=87.10 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=51.8
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|.+|+|||||+++|++.... ......+.|....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~--~~~~~~~~T~~~~~~~------------------------------------- 41 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA--KVSNIPGTTRDPVYGQ------------------------------------- 41 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS--EESSSTTSSSSEEEEE-------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccc--cccccccceeeeeeee-------------------------------------
Confidence 4899999999999999999973210 0000011111111100
Q ss_pred cccccceEEEeeCCChhH---------HHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDI---------LMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~---------f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.......+.++||||..+ ........+..+|++++|||+...
T Consensus 42 ~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 42 FEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP 92 (116)
T ss_dssp EEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH
T ss_pred eeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 001126788999999631 344466667899999999998763
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.18 E-value=3.4e-11 Score=92.52 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|.+..... ...|.......+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~------~~~t~g~~~~~i-------------------------------- 53 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH------ITPTQGFNIKTV-------------------------------- 53 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc------cCCCCCcceEEE--------------------------------
Confidence 345779999999999999999998742110 000100000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
...+..+.++||||+..|...+...+..+|++++|+|+.+.
T Consensus 54 -----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~ 94 (173)
T cd04155 54 -----QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK 94 (173)
T ss_pred -----EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 01126789999999999888777778999999999999863
No 137
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.18 E-value=2.2e-11 Score=93.80 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=67.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++....... ....|....... +.+ .
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~-~~t~~~~~~~~~--~~~-----------------------------~-- 49 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARM--ITI-----------------------------D-- 49 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEE--EEE-----------------------------C--
Confidence 468999999999999999999853211000 000111111100 000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----h---hhHHHHhHhccchhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----G---HDILMATMLNGAAVM 166 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~---~~il~~~~~nk~d~~ 166 (182)
.....+.+.||||+.+|.......+..+|++++|+|+.+..-.......+ . ..+......||+|+.
T Consensus 50 ----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 50 ----GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred ----CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 01157899999999999887777889999999999998642000011111 0 123345668999976
No 138
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.17 E-value=3.6e-11 Score=94.52 Aligned_cols=109 Identities=10% Similarity=-0.008 Sum_probs=68.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|..|+|||||+++|.+...... + .|.......
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~--~t~~~~~~~--------------------------------- 55 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH----Q--PTQHPTSEE--------------------------------- 55 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc----C--CccccceEE---------------------------------
Confidence 4457899999999999999999986321100 0 000000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch--------hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG--------HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~--------~~il~~~~~nk~d~~ 166 (182)
....+.++.++||||+..+.......+..+|++++|+|+.+.......++.+. ...+...++||+|+.
T Consensus 56 ----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 56 ----LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred ----EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 00012678999999999988877777899999999999986421111211111 113345679999974
No 139
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.17 E-value=7.7e-12 Score=99.17 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=41.6
Q ss_pred ceEEEeeCCChhHHHHHHHhc---cccCCeEEEEEEcCCCc-ccccccccchhhHHHH-----------hHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNG---AAVMDAALLLIGCDNAA-KTPEIVDCPGHDILMA-----------TMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~---~~~aD~ailVVda~~g~-~~~qt~e~l~~~il~~-----------~~~nk~d~~~ 167 (182)
..+.+||+|||.++...+... +..+-++|+|||+..-. -...+.|+| +.+|.. .+.||+|+..
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~L-y~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYL-YDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHH-HHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHH-HHHHHhhhhccCCCCEEEEEeCccccc
Confidence 679999999999887777766 78899999999998420 112344544 223322 4578888664
No 140
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.16 E-value=7.4e-11 Score=92.52 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=63.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC-ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~-~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
...++|+++|++|+|||||+++|.+.. .. +.....|.|....+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~-------------------------------- 67 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLA--RTSKTPGRTQLINFFE-------------------------------- 67 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCceeEEEEEe--------------------------------
Confidence 345789999999999999999998642 11 0111122232222100
Q ss_pred CCCCCcccccceEEEeeCCCh----------hHHHHHH---HhccccCCeEEEEEEcCCCcccccccccchh----hHHH
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGH----------DILMATM---LNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILM 156 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh----------~~f~~~~---~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~ 156 (182)
...++.++||||+ ..|...+ ..+...++++++|+|+..+ ......+.... .+..
T Consensus 68 --------~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~i~~~l~~~~~~~ 138 (196)
T PRK00454 68 --------VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP-LKELDLQMIEWLKEYGIPV 138 (196)
T ss_pred --------cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC-CCHHHHHHHHHHHHcCCcE
Confidence 0157999999995 2333222 2333455788999998876 43332221111 1223
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
..++||+|..+
T Consensus 139 iiv~nK~Dl~~ 149 (196)
T PRK00454 139 LIVLTKADKLK 149 (196)
T ss_pred EEEEECcccCC
Confidence 45689999764
No 141
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.16 E-value=3.2e-11 Score=91.42 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=44.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccch----hhHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~----~~il~~~~~nk~d~~ 166 (182)
..+.+.||||+..|...+...+..+|++++|+|+.+..-.... .+.+. .......++||+|+.
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 6799999999999888777778899999999999876201111 11111 113345679999974
No 142
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.16 E-value=3.3e-11 Score=92.98 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=66.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|++... ..+... ++...+.... +...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~--t~~~~~~~~~-~~~~---------------------------- 47 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF---PERTEA--TIGVDFRERT-VEID---------------------------- 47 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CCcccc--ceeEEEEEEE-EEEC----------------------------
Confidence 35799999999999999999985321 111111 1111111000 0000
Q ss_pred CCcccccceEEEeeCCChhHHHHH-HHhccccCCeEEEEEEcCCCcccccc-cccc----hh----hHHHHhHhccchhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMAT-MLNGAAVMDAALLLIGCDNAAKTPEI-VDCP----GH----DILMATMLNGAAVM 166 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~-~~~~~~~aD~ailVVda~~g~~~~qt-~e~l----~~----~il~~~~~nk~d~~ 166 (182)
.....+.++||||+.+|... .......+|++++|+|+.+.. .-+. ...+ .+ .++...+.||+|+.
T Consensus 48 ----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 48 ----GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA-SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred ----CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHH-HHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 01267899999999998754 444568899999999998762 1111 1111 11 13455678999975
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 123 ~ 123 (170)
T cd04115 123 E 123 (170)
T ss_pred h
Confidence 3
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.16 E-value=4.4e-11 Score=94.65 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+|+++|++|+|||||+++|.+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999864
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.15 E-value=3.8e-11 Score=112.60 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... ......|.|.+..... ..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~--~v~~~~gtT~d~~~~~-----------------------------~~~-- 495 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA--VVNDLAGTTRDPVDEI-----------------------------VEI-- 495 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--ccCCCCCCCcCcceeE-----------------------------EEE--
Confidence 3478999999999999999999974311 0011223332221100 001
Q ss_pred CCCcccccceEEEeeCCChh---------HHHHH--HHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD---------ILMAT--MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~---------~f~~~--~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
.+..+.++||||.. .|... ...++..+|++++|+|+.++ ...+....+... .....++
T Consensus 496 ------~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~-~s~~~~~i~~~~~~~~~piIiV~ 568 (712)
T PRK09518 496 ------DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP-ISEQDLKVMSMAVDAGRALVLVF 568 (712)
T ss_pred ------CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEE
Confidence 12678899999952 23322 23456889999999999998 666655433221 2344679
Q ss_pred ccchhhh
Q psy1174 161 NGAAVMD 167 (182)
Q Consensus 161 nk~d~~~ 167 (182)
||+|+.+
T Consensus 569 NK~DL~~ 575 (712)
T PRK09518 569 NKWDLMD 575 (712)
T ss_pred EchhcCC
Confidence 9999865
No 145
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.15 E-value=3.2e-11 Score=91.22 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=46.0
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccch----hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~----~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+.+|.......++.+|++++|+|..... ...+....+. ..++...++||+|..+
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 56899999999999988888899999999999987641 1111111111 2345567799999765
No 146
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.15 E-value=8.4e-11 Score=90.32 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=56.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||++++.+.... .+.............+.+ .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~---~~~~~t~~~~~~~~~~~~-----------------------------~-- 48 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN---PSFISTIGIDFKIRTIEL-----------------------------D-- 48 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC---cccccCccceEEEEEEEE-----------------------------C--
Confidence 468999999999999999999853211 000000001110000000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+.+|.......+..+|++++|+|+.++
T Consensus 49 ----~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~ 88 (167)
T cd01867 49 ----GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE 88 (167)
T ss_pred ----CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 0115688999999999888777777999999999999876
No 147
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.15 E-value=4.6e-11 Score=92.58 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=43.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-----cccch----hhHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-----VDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-----~e~l~----~~il~~~~~nk~d~~ 166 (182)
..+.++||||+.+|..........+|++++|+|+.+.. ..+. ...++ ..++...+.||+|..
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK-SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 56889999999999877777888999999999998752 1111 11111 112345669999975
No 148
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.15 E-value=4.9e-11 Score=90.33 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=66.6
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|+.|+|||||+++|.+..... ...|.......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~------~~~t~~~~~~~~~----------------------------------- 39 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT------TIPTIGFNVETVE----------------------------------- 39 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCcCcceEEEE-----------------------------------
Confidence 48999999999999999998643110 0011111110000
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cch----hhHHHHhHhccchhhh
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~----~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++++|+|+..+.......+ .+. ...+...+.||+|...
T Consensus 40 --~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 40 --YKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred --ECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 012679999999999987777777789999999999997521111111 111 1234456689999753
No 149
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.14 E-value=8.1e-11 Score=89.21 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=67.5
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|..++|||||+++|.+.... .+..+ |+...+....+ ...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~---~~~~~--t~~~~~~~~~~-~~~------------------------------ 45 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT---KDYKK--TIGVDFLEKQI-FLR------------------------------ 45 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCC--cEEEEEEEEEE-EEc------------------------------
Confidence 5899999999999999999853211 11111 22111111000 000
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch------hhHHHHhHhccchhhh
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG------HDILMATMLNGAAVMD 167 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~------~~il~~~~~nk~d~~~ 167 (182)
.......+.++||||+.+|.......++.+|++++|+|+.+.. .-+. ...+. ..++...+.||+|+.+
T Consensus 46 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 46 QSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred CCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 0001267899999999999887777889999999999998752 1111 00000 0133456689999754
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.14 E-value=3.6e-11 Score=104.28 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|++|+|||||+++|++.... .+...+.|.+.....+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~---v~~~~~tT~d~~~~~i~~------------------------------- 233 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY---AADQLFATLDPTTRRLDL------------------------------- 233 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee---eccCCccccCCEEEEEEe-------------------------------
Confidence 3467999999999999999999974210 001112222221110000
Q ss_pred CCCcccccceEEEeeCCCh---------hHHHHHHHhccccCCeEEEEEEcCCCcccccc---cccchh----hHHHHhH
Q psy1174 96 CTGRFQLVRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIGCDNAAKTPEI---VDCPGH----DILMATM 159 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh---------~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt---~e~l~~----~il~~~~ 159 (182)
..+.++.++||||. +.|.. +...+..||++++|+|+.++....+. .+.+.. ......+
T Consensus 234 -----~~~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV 307 (351)
T TIGR03156 234 -----PDGGEVLLTDTVGFIRDLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLV 307 (351)
T ss_pred -----CCCceEEEEecCcccccCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEE
Confidence 01257999999997 23433 34457899999999999876211111 011111 1234567
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 308 ~NK~Dl~~ 315 (351)
T TIGR03156 308 YNKIDLLD 315 (351)
T ss_pred EEeecCCC
Confidence 99999865
No 151
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.14 E-value=4.7e-11 Score=105.53 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+++++|+||+|||||+|+|++.... -...-.|.|.+.--..+.+ .
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A--IVTdI~GTTRDviee~i~i-----------------------------~- 263 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRA--IVTDIAGTTRDVIEEDINL-----------------------------N- 263 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCce--EecCCCCCccceEEEEEEE-----------------------------C-
Confidence 4467999999999999999999974311 0001133333322111111 2
Q ss_pred CCCcccccceEEEeeCCChh---HHH-----HHHHhccccCCeEEEEEEcCCCcccccccccch---hhHHHHhHhccch
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD---ILM-----ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG---HDILMATMLNGAA 164 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~---~f~-----~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~---~~il~~~~~nk~d 164 (182)
+.++.++||.|-+ +.. ......+..||.+++|+|+..+ ...+..+.+. .......++||+|
T Consensus 264 -------G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-~~~~d~~~~~~~~~~~~~i~v~NK~D 335 (454)
T COG0486 264 -------GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-LDKEDLALIELLPKKKPIIVVLNKAD 335 (454)
T ss_pred -------CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CchhhHHHHHhcccCCCEEEEEechh
Confidence 3889999999964 222 2234556999999999999986 4444444332 1112246699999
Q ss_pred hhhHH
Q psy1174 165 VMDAA 169 (182)
Q Consensus 165 ~~~~~ 169 (182)
++...
T Consensus 336 L~~~~ 340 (454)
T COG0486 336 LVSKI 340 (454)
T ss_pred ccccc
Confidence 88643
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.13 E-value=1e-10 Score=91.51 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=67.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+....|+++|+.|+|||||+++|.+..... ...|.......+ .
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~------~~~T~~~~~~~i-----------------------------~-- 59 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ------HVPTLHPTSEEL-----------------------------T-- 59 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc------cCCccCcceEEE-----------------------------E--
Confidence 345779999999999999999998532110 000110000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc----cccccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP----EIVDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~----qt~e~l~----~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+..|.......+..+|++++|+|+.+..... ...+.++ .......+.||+|+.
T Consensus 60 ------~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 60 ------IGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 01267899999999998876667778999999999998641111 1111111 113445668999975
No 153
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.13 E-value=5.2e-11 Score=91.32 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=43.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccchh----hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~~----~il~~~~~nk~d~~~ 167 (182)
.++.+.||||+..|..........+|++|+|+|+.+..-..+.. +.+.+ ..+...+.||+|+.+
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 67999999999998887777789999999999998631011111 11111 133456699999753
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.13 E-value=5.2e-11 Score=94.53 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=43.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cch----hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~----~~il~~~~~nk~d~~~ 167 (182)
..++++||||+..|.......+..+|++|+|+|+.++.-...... .+. ..++.+.++||+|...
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 568999999999998776777899999999999987521111111 110 1134456689999753
No 155
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.12 E-value=2.1e-10 Score=91.06 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=51.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|++|+|||||+|+|+|...... .....+.|....... ..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-~~~~~~~T~~~~~~~-----------------------------~~~~--- 47 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-KLSASSVTKTCQKES-----------------------------AVWD--- 47 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-ccCCCCcccccceee-----------------------------EEEC---
Confidence 4799999999999999999997532100 000112222221110 1112
Q ss_pred CcccccceEEEeeCCChhHH-------HHHHHh----ccccCCeEEEEEEcCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDIL-------MATMLN----GAAVMDAALLLIGCDN 139 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f-------~~~~~~----~~~~aD~ailVVda~~ 139 (182)
++++++|||||..+. ..++.. +...+|++|+|+++..
T Consensus 48 -----~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 48 -----GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred -----CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 278999999997543 223332 2356899999999875
No 156
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.12 E-value=3.3e-11 Score=116.18 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=81.8
Q ss_pred EEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcc
Q psy1174 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRF 100 (182)
Q Consensus 21 ~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
++++| ||||+++|.++.. .....+|+|+.++.+.+.+-..+ ..|.. ...... ..
T Consensus 469 ~~~~~----KTtLLD~iR~t~v---~~~EaGGITQ~IGa~~v~~~~~~-~~~~~--------~~~~~~----------~~ 522 (1049)
T PRK14845 469 GILVH----NTTLLDKIRKTRV---AKKEAGGITQHIGATEIPIDVIK-KICGP--------LLKLLK----------AE 522 (1049)
T ss_pred eeecc----cccHHHHHhCCCc---ccccCCCceeccceEEEEecccc-ccccc--------cccccc----------cc
Confidence 45555 9999999998654 45567999999998654431000 00000 000000 00
Q ss_pred cccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhh
Q psy1174 101 QLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVM 166 (182)
Q Consensus 101 ~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~ 166 (182)
.....++|+|||||.+|...+.+++..+|++++|||+.+| +..|+.+++.++ +.....+||+|..
T Consensus 523 ~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-i~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 523 IKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-FKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc-CCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 0113489999999999999888999999999999999999 999999866543 2234679999975
No 157
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.12 E-value=4.8e-11 Score=91.03 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=56.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|.+++|||||+++|.+.... .+..+..+.......+.+ .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~--- 48 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN---LDSKSTIGVEFATRSIQI-----------------------------D--- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEEEEEE-----------------------------C---
Confidence 57999999999999999999854311 010111111111100000 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||...|.......+..+|++|+|+|+.+.
T Consensus 49 ---~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (165)
T cd01868 49 ---GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKK 88 (165)
T ss_pred ---CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH
Confidence 0114688999999999888777777899999999999864
No 158
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.12 E-value=7.9e-11 Score=91.76 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCcceEEECCCCCChHHHHhHHh-cCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~-g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...+|+++|..++|||||+.+|. +..... ..|+...+...
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~-------~~t~~~~~~~~-------------------------------- 52 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTT-------IPTIGFNVETV-------------------------------- 52 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCc-------CCccccceEEE--------------------------------
Confidence 35789999999999999999996 321110 00111111000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----hh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----GH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~~----~il~~~~~nk~d~~ 166 (182)
......+.+.||||+..|.......+..+|++|+|+|+.+..-.....+.+ .+ .+....+.||+|+.
T Consensus 53 -----~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 53 -----TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred -----EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 011267999999999999887666779999999999998642111112211 11 12345679999975
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 128 ~ 128 (175)
T smart00177 128 D 128 (175)
T ss_pred c
Confidence 3
No 159
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.11 E-value=7.7e-11 Score=88.77 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=42.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc-------cchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD-------CPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e-------~l~~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|.......+..+|++++|+|+.++....+... .....+....++||+|+..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 568999999998888766666788999999999987621111111 1111233445689999763
No 160
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=5.6e-11 Score=104.42 Aligned_cols=82 Identities=23% Similarity=0.198 Sum_probs=52.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
-.|+++|.+|+|||||+++|++... +.....+.|.......+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~--------------------------------- 203 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRV--------------------------------- 203 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEe---------------------------------
Confidence 3699999999999999999986421 1111112222111110000
Q ss_pred CcccccceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcC
Q psy1174 98 GRFQLVRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCD 138 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~ 138 (182)
.....+.|+||||... +...+.+.+..+|++++|||+.
T Consensus 204 ---~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 204 ---DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred ---CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccC
Confidence 0114599999999742 4455677889999999999987
No 161
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.11 E-value=5.6e-11 Score=93.74 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=43.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc----c---ccccccchhhHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK----T---PEIVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~----~---~qt~e~l~~~il~~~~~nk~d~~ 166 (182)
..+.++||||+.+|.......+..+|++|+|+|+....- . .+..+.....++.....||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 578999999999998877777888999999999986410 0 01111111123444668999975
No 162
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.11 E-value=6e-11 Score=90.58 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.0
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
++|+++|++|+|||||+++|++.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 163
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.11 E-value=7.3e-11 Score=105.25 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=67.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++..... .....|.|.+.....+.+ .
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--vs~~pgtTrd~~~~~i~~-----------------------------~- 249 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--VSDIKGTTRDVVEGDFEL-----------------------------N- 249 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcEEEEEEEEEEE-----------------------------C-
Confidence 45689999999999999999999742110 111234444432211111 1
Q ss_pred CCCcccccceEEEeeCCChhHHHH--------HHHhccccCCeEEEEEEcCCCcccccccccch----hhHHHHhHhccc
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILMATMLNGA 163 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~--------~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~~~~~nk~ 163 (182)
+..+.++||||..++.. .....+..+|++++|+|+..+ ...+.. .+. .......++||+
T Consensus 250 -------g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~-~s~~~~-~l~~~~~~~~piIlV~NK~ 320 (442)
T TIGR00450 250 -------GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP-LTKDDF-LIIDLNKSKKPFILVLNKI 320 (442)
T ss_pred -------CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-CChhHH-HHHHHhhCCCCEEEEEECc
Confidence 26789999999854332 123566889999999999876 322111 111 112234668999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+..
T Consensus 321 Dl~~ 324 (442)
T TIGR00450 321 DLKI 324 (442)
T ss_pred cCCC
Confidence 9764
No 164
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.10 E-value=4.5e-11 Score=88.27 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=42.9
Q ss_pred ceEEEeeCCChhHHH-------HHHHhccccCCeEEEEEEcCCCcccccccc----cchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILM-------ATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~-------~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+.++. ......+..+|++++|+|+..+ ....... ...+......++||.|...
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR-ADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 679999999986543 3344567899999999999987 3333332 1112233446799999765
No 165
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.10 E-value=8.4e-11 Score=92.43 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=67.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|..++|||||+.+|....... ...|+...+..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~------~~pt~g~~~~~~-------------------------------- 56 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETV-------------------------------- 56 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc------ccCCcceeEEEE--------------------------------
Confidence 344689999999999999999997321100 001111111000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccchh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~~----~il~~~~~nk~d~~ 166 (182)
......+.+.||||+..|..........+|++|+|+|+.+..-.... .+.+.+ .++...+.||+|+.
T Consensus 57 -----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 57 -----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 01126799999999999988766777899999999999864211111 111111 13344568999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 132 ~ 132 (181)
T PLN00223 132 N 132 (181)
T ss_pred C
Confidence 4
No 166
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.10 E-value=4.2e-10 Score=85.19 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=56.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++++|||||+++|.+..... + ...|+...+....+ .. .
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~--~~~t~~~~~~~~~~-~~--------------------------~--- 45 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS---K--YLPTIGIDYGVKKV-SV--------------------------R--- 45 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---C--CCCccceeEEEEEE-EE--------------------------C---
Confidence 368999999999999999998643210 0 11111111110000 00 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....++++||||+..|..........+|++|+|+|+.+.
T Consensus 46 ---~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~ 85 (168)
T cd04119 46 ---NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR 85 (168)
T ss_pred ---CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 0126789999999999988777777899999999999864
No 167
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.09 E-value=8.4e-11 Score=90.14 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=44.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-------hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
..+.+.||||+.+|.......++.+|++++|+|+.+..-..+..+.+. .......+.||+|+..
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 568999999999998877788899999999999986421111111111 1123456689999754
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.09 E-value=5.8e-11 Score=105.42 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.|+++|.+|+|||||+|+|++.... .....+.|.+.....+.+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~---v~~~~~tTld~~~~~i~l-----------------------------~--- 242 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY---AADQLFATLDPTLRRIDV-----------------------------A--- 242 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee---eccCCCCCcCCceEEEEe-----------------------------C---
Confidence 56999999999999999999863210 011112222221100000 0
Q ss_pred CcccccceEEEeeCCChhH---------HHHHHHhccccCCeEEEEEEcCCCcccccc---cccchh----hHHHHhHhc
Q psy1174 98 GRFQLVRHVSFVDCPGHDI---------LMATMLNGAAVMDAALLLIGCDNAAKTPEI---VDCPGH----DILMATMLN 161 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~---------f~~~~~~~~~~aD~ailVVda~~g~~~~qt---~e~l~~----~il~~~~~n 161 (182)
....+.++||||..+ |.. +...+..||++|+|+|+.+.....+. .+.+.. .+....++|
T Consensus 243 ----~~~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~N 317 (426)
T PRK11058 243 ----DVGETVLADTVGFIRHLPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMN 317 (426)
T ss_pred ----CCCeEEEEecCcccccCCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 013688999999722 433 45566889999999999876211111 111111 234456799
Q ss_pred cchhhh
Q psy1174 162 GAAVMD 167 (182)
Q Consensus 162 k~d~~~ 167 (182)
|+|+.+
T Consensus 318 KiDL~~ 323 (426)
T PRK11058 318 KIDMLD 323 (426)
T ss_pred cccCCC
Confidence 999764
No 169
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.07 E-value=1.5e-10 Score=92.56 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=74.1
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCC-ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFP 90 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~-~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (182)
+.+....-|+++|++|+|||||+|+|++.. .. +.+...|.|..+.+. ..+
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA--rtSktPGrTq~iNff-----~~~---------------------- 69 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA--RTSKTPGRTQLINFF-----EVD---------------------- 69 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCccee--ecCCCCCccceeEEE-----Eec----------------------
Confidence 333455679999999999999999999743 11 233446777777662 111
Q ss_pred ccCCCCCCcccccceEEEeeCCChh----------H---HHHHHHhccccCCeEEEEEEcCCCcccccccccchh----h
Q psy1174 91 CLRSSCTGRFQLVRHVSFVDCPGHD----------I---LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----D 153 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~i~lIDtPGh~----------~---f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~ 153 (182)
..+.|||-||+. . ++.+-+..=....+++++||+..+ +....+|.+.. .
T Consensus 70 -------------~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~-~~~~D~em~~~l~~~~ 135 (200)
T COG0218 70 -------------DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP-PKDLDREMIEFLLELG 135 (200)
T ss_pred -------------CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC-CcHHHHHHHHHHHHcC
Confidence 348999999973 1 222222222446789999999998 76666663322 2
Q ss_pred HHHHhHhccchhhh
Q psy1174 154 ILMATMLNGAAVMD 167 (182)
Q Consensus 154 il~~~~~nk~d~~~ 167 (182)
+....++||+|.++
T Consensus 136 i~~~vv~tK~DKi~ 149 (200)
T COG0218 136 IPVIVVLTKADKLK 149 (200)
T ss_pred CCeEEEEEccccCC
Confidence 33446799999765
No 170
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.07 E-value=1.1e-10 Score=92.88 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=67.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|.+..-. .+ ...|+...+....+ .. .
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~---~~--~~~t~~~~~~~~~~-~~--------------------------~-- 51 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS---GS--YITTIGVDFKIRTV-EI--------------------------N-- 51 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC---CC--cCccccceeEEEEE-EE--------------------------C--
Confidence 568999999999999999999853211 00 01111111100000 00 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh------hHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++++|+|+.+..-.....+.+.. .++...+.||+|+..
T Consensus 52 ----~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 52 ----GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred ----CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 0115688999999999988777788889999999999875211111111111 123345689999753
No 171
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.07 E-value=5.8e-10 Score=85.18 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=56.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|.+.... .+.....+.......+.+ .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~-- 47 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTIEL-----------------------------D-- 47 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEE-----------------------------C--
Confidence 357999999999999999999853211 000011111111100000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 48 ----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 87 (166)
T cd01869 48 ----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ 87 (166)
T ss_pred ----CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH
Confidence 0125789999999999988777778899999999999875
No 172
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.06 E-value=7.8e-10 Score=84.06 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=44.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cchh----hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~~----~il~~~~~nk~d~~~ 167 (182)
..+.++||||+.+|.......+..+|++|+|+|+.+..-.....+ .+.. ..+...++||+|+.+
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 679999999999998877777899999999999986410011111 1111 134556799999753
No 173
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.06 E-value=1.3e-10 Score=84.57 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=45.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc---------cchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD---------CPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e---------~l~~~il~~~~~nk~d~~~ 167 (182)
..+.++|+||+..+.......+..+|++++|+|+..+ ....... ..........++||+|...
T Consensus 45 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 45 VKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 6799999999999888777888999999999999986 2222111 1112233446689999764
No 174
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05 E-value=8e-10 Score=84.87 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-ccc----ch---hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDC----PG---HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~----l~---~~il~~~~~nk~d~~~ 167 (182)
.+++++||||+..+...+...+..+|++++|+|+.++ ..-+. .+. +. ..+......||+|+.+
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 47 VPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP-STLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred EEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 6799999999998877777778999999999999875 21111 010 10 0123345589999764
No 175
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.04 E-value=1.7e-10 Score=88.23 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=30.0
Q ss_pred ceEEEeeCCChhH-HHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDI-LMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~-f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.. +.......+..+|++|+|+|+.+.
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 84 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR 84 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH
Confidence 4688999999985 344456677899999999999876
No 176
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.01 E-value=2.2e-10 Score=88.43 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=41.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh------hHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH------DILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~------~il~~~~~nk~d~~ 166 (182)
..+.+.||||+.+|..........+|++|+|+|+.++. .-+. ...+.. .++...+.||+|+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 57889999999988765555668899999999999762 1111 111100 13444668999975
No 177
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.01 E-value=2.1e-09 Score=80.73 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=43.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc-------h-hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP-------G-HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l-------~-~~il~~~~~nk~d~~~ 167 (182)
.++.++|+||+..+.......+..+|++++|+|.....-........ . .......++||+|...
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 67899999999998888778889999999999998652111111100 0 1233446689999764
No 178
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=2.5e-10 Score=97.25 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=65.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.++|.|.|++|+|||||+++|++.... .....|++-.+ ..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE----------vA~YPFTTK~i------------------------------~v 207 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE----------VAPYPFTTKGI------------------------------HV 207 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc----------cCCCCccccce------------------------------eE
Confidence 457999999999999999999864211 00111111000 01
Q ss_pred CCcccccceEEEeeCCChh--------HHHHHHHhcc-ccCCeEEEEEEcCCCcccccccc---cchhh------HHHHh
Q psy1174 97 TGRFQLVRHVSFVDCPGHD--------ILMATMLNGA-AVMDAALLLIGCDNAAKTPEIVD---CPGHD------ILMAT 158 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~--------~f~~~~~~~~-~~aD~ailVVda~~g~~~~qt~e---~l~~~------il~~~ 158 (182)
..++....++-+|||||.- ..-.+.+.|+ ...+++++++|+.+- ++.+.| +|-+- ...+.
T Consensus 208 Ghfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~--cgy~lE~Q~~L~~eIk~~f~~p~v~ 285 (346)
T COG1084 208 GHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET--CGYSLEEQISLLEEIKELFKAPIVV 285 (346)
T ss_pred eeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc--cCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 1112233689999999962 2344455566 778899999999974 223322 11111 23456
Q ss_pred Hhccchhhh
Q psy1174 159 MLNGAAVMD 167 (182)
Q Consensus 159 ~~nk~d~~~ 167 (182)
.+||+|+.+
T Consensus 286 V~nK~D~~~ 294 (346)
T COG1084 286 VINKIDIAD 294 (346)
T ss_pred EEecccccc
Confidence 799999774
No 179
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=4.1e-10 Score=97.16 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=54.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|.+|+|||||+++|++.... .......|.......+.+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~---va~ypfTT~~p~~G~v~~------------------------------- 202 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLHPNLGVVRV------------------------------- 202 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCc---cCCCCCceeCceEEEEEe-------------------------------
Confidence 3456999999999999999999863210 000112222221110000
Q ss_pred CCCcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.+..++.++|+||.. .+.....+.+..+|++|+|||+.+.
T Consensus 203 -----~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~ 249 (335)
T PRK12299 203 -----DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV 249 (335)
T ss_pred -----CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC
Confidence 112579999999963 2445556677889999999999864
No 180
>PLN03118 Rab family protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=86.76 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=58.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.|+|||||+++|++.... +.............+.+ .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~----~~~~t~~~~~~~~~~~~-----------------------------~- 58 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE----DLAPTIGVDFKIKQLTV-----------------------------G- 58 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----CcCCCceeEEEEEEEEE-----------------------------C-
Confidence 3468999999999999999999853211 00011111110000000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 59 -----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~ 98 (211)
T PLN03118 59 -----GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR 98 (211)
T ss_pred -----CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 0125789999999999988777888999999999999875
No 181
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.99 E-value=1.7e-09 Score=81.93 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=32.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.++||||+..|.......++.+|++++|+|+.+.
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR 85 (161)
T ss_pred EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH
Confidence 5689999999999887777777899999999999875
No 182
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=4.4e-10 Score=88.08 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=33.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||..+|.......+..+|++|+|+|+.+.
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~ 85 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ 85 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH
Confidence 5688999999999988788888999999999999875
No 183
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.97 E-value=8.4e-10 Score=84.42 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=28.4
Q ss_pred ceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.++||||+.. +.......+..+|++++|+|+...
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCC
Confidence 7799999999732 222345567789999999999865
No 184
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.97 E-value=2.7e-09 Score=80.24 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=32.4
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+..|...+...+..+|++++|+|..+.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~ 85 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR 85 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH
Confidence 5578899999999988777788899999999999864
No 185
>PTZ00369 Ras-like protein; Provisional
Probab=98.97 E-value=1.7e-09 Score=85.18 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=57.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|..|+|||||++++.+..... + ...|+...+. ..+ .. +
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~---~--~~~t~~~~~~-~~~-~~------------------------~--- 49 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID---E--YDPTIEDSYR-KQC-VI------------------------D--- 49 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc---C--cCCchhhEEE-EEE-EE------------------------C---
Confidence 45689999999999999999998532110 0 0001100000 000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+.+|...+......+|++++|+|+.+.
T Consensus 50 -----~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~ 89 (189)
T PTZ00369 50 -----EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSR 89 (189)
T ss_pred -----CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCH
Confidence 0115688999999999998877788999999999999875
No 186
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.97 E-value=1.6e-10 Score=83.74 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.|++|...+.......+..+|++++|+|+.+.
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~ 86 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP 86 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCCh
Confidence 4588999999987776544458999999999999976
No 187
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.97 E-value=4e-09 Score=80.73 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|+.++|||||+++|.+..-. .+ ...|+...+....+ ..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~---~~--~~~t~~~~~~~~~~-~~~----------------------------- 47 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM---AD--CPHTIGVEFGTRII-EVN----------------------------- 47 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CC--CCcccceeEEEEEE-EEC-----------------------------
Confidence 57999999999999999999853211 00 00111111100000 000
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.+.||||+..|.......++.+|++|+|+|+.+.
T Consensus 48 ---~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 87 (166)
T cd04122 48 ---GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 87 (166)
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 0125688999999999988777778999999999999975
No 188
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.96 E-value=2.4e-09 Score=82.62 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=54.9
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|..++|||||+++|.+.... ....|+...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~------~~~~T~~~~~~~~------------------------------------ 38 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM------QPIPTIGFNVETV------------------------------------ 38 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC------CcCCcCceeEEEE------------------------------------
Confidence 4789999999999999999863211 0111111111000
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....++.++||||+..|.......+..+|++++|+|+.+.
T Consensus 39 -~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 39 -EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred -EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 01126799999999998887777778999999999999864
No 189
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.96 E-value=1.4e-09 Score=88.58 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=43.4
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-----------hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-----------HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-----------~~il~~~~~nk~d~~~ 167 (182)
..+.+.||||+..|..........+|++|+|+|+.+. ++.+.+. ..++...+.||+|+..
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~----~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV----QSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH----HHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 6789999999999988766778899999999999975 1211110 1133446689999754
No 190
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.95 E-value=3.7e-09 Score=80.02 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=31.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||.++|..........+|++++|+|..+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ 85 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCH
Confidence 5678899999999987766677899999999999864
No 191
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.95 E-value=5.7e-10 Score=85.74 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=31.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||...|.......+..+|++|+|+|..+.
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 82 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP 82 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCH
Confidence 5688999999998887666677899999999999865
No 192
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.95 E-value=3.4e-09 Score=81.15 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=32.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|..........+|++|+|.|....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK 85 (165)
T ss_pred EEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence 6789999999999887666777899999999999876
No 193
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.95 E-value=3e-09 Score=81.95 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=44.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccch--hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPG--HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~--~~il~~~~~nk~d~~~ 167 (182)
.++.+.||||+.+|.......+..+|++|+|+|+.+..-....+ +++. ..++...+.||+|+.+
T Consensus 44 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 67999999999999887777889999999999998752011111 1111 1233446799999764
No 194
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.94 E-value=4.2e-09 Score=80.73 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++++|||||+++|++.... .+... ++...+....+ .. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~--~~~~~~~~~~~-~~--------------------------~- 50 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD---TQLFH--TIGVEFLNKDL-EV--------------------------D- 50 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC---cCcCC--ceeeEEEEEEE-EE--------------------------C-
Confidence 3468999999999999999999853211 00001 11111100000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+..|.......+..+|++++|.|..+.
T Consensus 51 -----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (170)
T cd04116 51 -----GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS 90 (170)
T ss_pred -----CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH
Confidence 0115678899999999988777788999999999998864
No 195
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.94 E-value=1.1e-09 Score=82.25 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEECCCCCChHHHHhHHhc
Q psy1174 20 PGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g 39 (182)
|+++|+.|+|||||++.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 196
>PLN03110 Rab GTPase; Provisional
Probab=98.93 E-value=1e-09 Score=88.57 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=58.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.++|||||+++|.+.... .+ ...|+...+....+ .. .
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~---~~--~~~t~g~~~~~~~v-~~--------------------------~- 57 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC---LE--SKSTIGVEFATRTL-QV--------------------------E- 57 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC---CC--CCCceeEEEEEEEE-EE--------------------------C-
Confidence 3468999999999999999999853211 01 11122221111111 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||..+|.......+..+|++|+|+|..+.
T Consensus 58 -----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 97 (216)
T PLN03110 58 -----GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR 97 (216)
T ss_pred -----CEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 0115788999999999988777778999999999999865
No 197
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.93 E-value=1e-09 Score=87.72 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred ceEEEeeCCChhHH--------HHHHHhccccCCeEEEEEEcCCCccccc-c----cccch------hhHHHHhHhccch
Q psy1174 104 RHVSFVDCPGHDIL--------MATMLNGAAVMDAALLLIGCDNAAKTPE-I----VDCPG------HDILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~~f--------~~~~~~~~~~aD~ailVVda~~g~~~~q-t----~e~l~------~~il~~~~~nk~d 164 (182)
..+.++||||...| .......+..+|++|+|+|+.+.. .-+ . .+.+. ..++.+...||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 56889999997543 222345578899999999998762 111 0 11111 1134456799999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+..
T Consensus 128 l~~ 130 (198)
T cd04142 128 QQR 130 (198)
T ss_pred ccc
Confidence 854
No 198
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.93 E-value=5.6e-09 Score=82.00 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=56.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.++|||||+.++........ ..|+...+..+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~------~~T~~~~~~~~--------------------------------- 56 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT------IPTIGFNVETV--------------------------------- 56 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc------CCccccceEEE---------------------------------
Confidence 346799999999999999999963211100 00111111000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+..|..........+|++|+|+|+.+.
T Consensus 57 ----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~ 97 (182)
T PTZ00133 57 ----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR 97 (182)
T ss_pred ----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 00126799999999999988777778999999999999863
No 199
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.92 E-value=5.3e-09 Score=81.56 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|..|+|||||+++|.+.... .+ ...|+...+.. .+ .. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~---~~--~~~t~~~~~~~-~i-~~--------------------------~--- 44 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP---EE--YVPTVFENYVT-NI-QG--------------------------P--- 44 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC---CC--CCCeeeeeeEE-EE-Ee--------------------------c---
Confidence 36899999999999999999853211 00 11121111110 00 00 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.+.||||+.+|..........+|++|+|+|+.+.
T Consensus 45 --~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~ 85 (187)
T cd04132 45 --NGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP 85 (187)
T ss_pred --CCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH
Confidence 00115688999999999987766677899999999999875
No 200
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.92 E-value=4.8e-09 Score=82.25 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=43.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc----cccccch----hhHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP----EIVDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~----qt~e~l~----~~il~~~~~nk~d~~ 166 (182)
..+.+.||||+.+|.......+..+|++++|+|+.+..... +..++.. ..+....++||+|+.
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 67999999999999876666678899999999998752111 1111111 113445669999975
No 201
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.92 E-value=3.2e-09 Score=80.97 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=42.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccchh------hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l~~------~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|..........+|++++|+|+.+.. ......+.+.. .++.....||+|+.+
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 57899999999987665555568899999999998741 11111111111 133456689999765
No 202
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.91 E-value=1.1e-09 Score=85.61 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=70.6
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCL 92 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (182)
..+...+|.++|..||||||+++.|....... .....++. ..-+.
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~--------~~pT~g~~-~~~i~-------------------------- 54 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE--------TIPTIGFN-IEEIK-------------------------- 54 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE--------EEEESSEE-EEEEE--------------------------
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc--------cCcccccc-cceee--------------------------
Confidence 34667889999999999999999997432110 11111110 00000
Q ss_pred CCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch----h----hHHHHhHhccch
Q psy1174 93 RSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----H----DILMATMLNGAA 164 (182)
Q Consensus 93 ~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~----~il~~~~~nk~d 164 (182)
..+..+.+.|.+|+..+....-.....+|++|+|||+.+.....+.++.|. + ..+...++||+|
T Consensus 55 --------~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 55 --------YKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp --------ETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred --------eCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 112789999999998887766667788999999999997522233333221 1 122336689998
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
..+
T Consensus 127 ~~~ 129 (175)
T PF00025_consen 127 LPD 129 (175)
T ss_dssp STT
T ss_pred ccC
Confidence 653
No 203
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.91 E-value=5.9e-09 Score=79.43 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=32.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||+..|..........+|++++|+|..+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQ 85 (164)
T ss_pred EEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCH
Confidence 5678999999999998877888999999999998764
No 204
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.91 E-value=8.6e-09 Score=78.28 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=43.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----hh--hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----GH--DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~~--~il~~~~~nk~d~~~ 167 (182)
..+.+.||||+..|...+...+..+|++++|+|..+..-....+..+ .+ ..+.....||+|+.+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 67899999999998887777889999999999998652111001100 01 133445589999753
No 205
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.91 E-value=5.8e-09 Score=80.10 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=32.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|.......+..+|++++|+|..+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~ 85 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE 85 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH
Confidence 5688999999999988777778999999999999875
No 206
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.91 E-value=1.6e-09 Score=91.02 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..+|+++|++|+|||||+++|.+..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998643
No 207
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.90 E-value=8.5e-09 Score=81.17 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=32.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|.......+..+|++|+|+|..+.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~ 83 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR 83 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH
Confidence 4688999999999998777888999999999999875
No 208
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2e-09 Score=97.42 Aligned_cols=90 Identities=24% Similarity=0.356 Sum_probs=67.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
|+.-|+|+|++|+|||||+..|....+...-.+...-+|+..+.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK------------------------------------ 111 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGK------------------------------------ 111 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecc------------------------------------
Confidence 44567899999999999999998533322223333444444432
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH 152 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~ 152 (182)
.++++|+.|| +-+..|+.-+..||.+||+||++-| +...|.|+|+-
T Consensus 112 -------~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-fEMETmEFLni 157 (1077)
T COG5192 112 -------TRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-FEMETMEFLNI 157 (1077)
T ss_pred -------eeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-ceehHHHHHHH
Confidence 2899999999 3445688899999999999999999 99999997753
No 209
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.89 E-value=8.2e-10 Score=85.54 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=67.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|..|+|||||++++++.... ..+ .--|+...+..-.+ .. .
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~--~~~--~~~T~~~~~~~~~~-~~--------------------------~ 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS--LNA--YSPTIKPRYAVNTV-EV--------------------------Y 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC--ccc--CCCccCcceEEEEE-EE--------------------------C
Confidence 45678999999999999999999853211 000 00111111100000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-----hHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-----DILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-----~il~~~~~nk~d~~~ 167 (182)
+ ....+.+.|++|...|..........+|++|+|+|+.+..-.....+.+.. .++....+||+|+.+
T Consensus 51 ~------~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 51 G------QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred C------eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 0 114577889999988866555556899999999999875110011111111 244567799999854
No 210
>PRK09866 hypothetical protein; Provisional
Probab=98.89 E-value=2.1e-09 Score=99.00 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=46.5
Q ss_pred cceEEEeeCCChhH-----HHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH------HHHhHhccchhhh
Q psy1174 103 VRHVSFVDCPGHDI-----LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI------LMATMLNGAAVMD 167 (182)
Q Consensus 103 ~~~i~lIDtPGh~~-----f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i------l~~~~~nk~d~~~ 167 (182)
..++.||||||... +...|..++..+|++++|||+..+ +....++++++.. ..+.++||+|..+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~-~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL-KSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC-CChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 37899999999632 566677889999999999999986 5544444443321 3345689999764
No 211
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.88 E-value=6.1e-09 Score=79.14 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=32.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||+.+|..........+|++++|+|..+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~ 85 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQ 85 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCH
Confidence 4688999999999988777777899999999999875
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.88 E-value=4.7e-09 Score=80.63 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=31.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|..........+|++++|+|..+.
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~ 84 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 84 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH
Confidence 5688999999999887666667899999999999875
No 213
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.87 E-value=8.2e-09 Score=81.96 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|..++|||||+++|++.... .. ...|+...+.... +... .
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~---~~--~~~t~~~d~~~~~-v~~~-------------------------~---- 46 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS---QH--YKATIGVDFALKV-IEWD-------------------------P---- 46 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CC--CCCceeEEEEEEE-EEEC-------------------------C----
Confidence 6899999999999999999853211 00 1112221111000 0000 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+..|.......+..+|++|+|+|..+.
T Consensus 47 --~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~ 86 (201)
T cd04107 47 --NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRP 86 (201)
T ss_pred --CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCH
Confidence 0115689999999999987777777999999999999864
No 214
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.87 E-value=9.1e-09 Score=79.82 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=56.6
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|..++|||||++++++..-. .+ ..-|+...+....+ .. .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~---~~--~~~t~~~~~~~~~~-~~--------------------------~---- 45 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD---KN--YKATIGVDFEMERF-EI--------------------------L---- 45 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CC--CCCceeeEEEEEEE-EE--------------------------C----
Confidence 4889999999999999999853211 11 11122222210000 00 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.+.||||..+|.......++.+|++++|+|+.+.
T Consensus 46 --~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~ 85 (170)
T cd04108 46 --GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV 85 (170)
T ss_pred --CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH
Confidence 0126799999999999988777778999999999999864
No 215
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.86 E-value=2.8e-09 Score=96.18 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=52.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
...|+++|.+|+|||||+++|++.... .....+.|.......+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~--------------------------------- 202 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQ--------------------------------- 202 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEE---------------------------------
Confidence 356999999999999999999864210 01111222221110000
Q ss_pred CCcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
....+|.++||||.. .+....++.+..+|++|+|||+..
T Consensus 203 ----~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 203 ----AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred ----ECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 112679999999952 123344556788999999999974
No 216
>KOG1191|consensus
Probab=98.84 E-value=3.8e-09 Score=94.01 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+..+.|+|+|++|+|||||+|+|+..... -...+.|.|.+.--+.+. -+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drs--IVSpv~GTTRDaiea~v~-----------------------------~~ 314 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRS--IVSPVPGTTRDAIEAQVT-----------------------------VN 314 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCce--EeCCCCCcchhhheeEee-----------------------------cC
Confidence 34578999999999999999999853210 011123333332221111 13
Q ss_pred CCCCcccccceEEEeeCCChhH--------H-HHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDI--------L-MATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~--------f-~~~~~~~~~~aD~ailVVda~~g 140 (182)
| .++.++||.|-.. . .......+..||++++||||.++
T Consensus 315 G--------~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~ 361 (531)
T KOG1191|consen 315 G--------VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEES 361 (531)
T ss_pred C--------eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccc
Confidence 3 8999999999754 1 11234556899999999999876
No 217
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.84 E-value=1.5e-08 Score=78.26 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=33.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||+..|.......+..+|++++|+|+.+.
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 99 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNE 99 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCH
Confidence 6789999999999988777788999999999999865
No 218
>PLN03108 Rab family protein; Provisional
Probab=98.83 E-value=1.3e-08 Score=81.84 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.++|||||+++|.+..... . ...|+...+....+ .. .
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~---~--~~~ti~~~~~~~~i-~~--------------------------~ 51 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---V--HDLTIGVEFGARMI-TI--------------------------D 51 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC---C--CCCCccceEEEEEE-EE--------------------------C
Confidence 345789999999999999999998532110 0 00011111100000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----h---hhHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----G---HDILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~---~~il~~~~~nk~d~~~ 167 (182)
.....+.+.||||+..|.......+..+|++|+|+|+....-.....+.+ . ..+....+.||+|+..
T Consensus 52 ------~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 52 ------NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred ------CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 01146889999999999887777778999999999998752111111111 0 1133446689999754
No 219
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.83 E-value=1.6e-08 Score=81.41 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=55.9
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|..|+|||||+++|.+.... .+ ...|+...+....+ .+ .+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~---~~--~~~T~~~d~~~~~i-~~--------------------------~~--- 46 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG---KS--YKQTIGLDFFSKRV-TL--------------------------PG--- 46 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CC--CCCceeEEEEEEEE-Ee--------------------------CC---
Confidence 5899999999999999999853211 11 11122221110000 00 00
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+..|......-+..+|++|+|+|+.+.
T Consensus 47 --~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~ 86 (215)
T cd04109 47 --NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS 86 (215)
T ss_pred --CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH
Confidence 0126789999999988887766777999999999999864
No 220
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.81 E-value=1.3e-08 Score=79.82 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=41.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh------hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~------~il~~~~~nk~d~~~ 167 (182)
..+.+.||||..+|..........+|++++|+|+.+..-....+..+.. ......+.||+|+..
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 5678999999988877666667789999999999865101001111110 123446699999753
No 221
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.80 E-value=1.7e-08 Score=82.82 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=52.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++|++|+|||||+++|.+.... .....+.|....... ..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~-----------------------------~~~~---- 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGV-----------------------------LEYK---- 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEE-----------------------------EEEC----
Confidence 4899999999999999999974321 000011111110000 0011
Q ss_pred cccccceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..++.++||||..+ +...+...++.+|++++|+|+.+.
T Consensus 46 ----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 46 ----GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred ----CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 26799999999742 334566778999999999998754
No 222
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.79 E-value=2.1e-08 Score=77.00 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=30.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+.+|.......+..+|++++|.|....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~ 85 (175)
T cd01870 49 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 85 (175)
T ss_pred EEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH
Confidence 5688999999998887655677899999999998853
No 223
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.79 E-value=3.2e-09 Score=97.88 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCccccc
Q psy1174 24 GHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLV 103 (182)
Q Consensus 24 G~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
|.+|+|||||+|+|.+... +.....|.|++.....+.. . +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~v~n~pG~Tv~~~~~~i~~-----------------------------~--------~ 40 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---TVGNWPGVTVEKKEGKLGF-----------------------------Q--------G 40 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---eecCCCCeEEEEEEEEEEE-----------------------------C--------C
Confidence 8999999999999997532 1222356665543321111 1 1
Q ss_pred ceEEEeeCCChhHHHHH-----HHh---ccccCCeEEEEEEcCCCccc-ccccccchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMAT-----MLN---GAAVMDAALLLIGCDNAAKT-PEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~-----~~~---~~~~aD~ailVVda~~g~~~-~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
++++++||||+.+|... +.+ ....+|++++|+|+...... ..+.+..+........+||+|+..
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 56899999998776431 111 23478999999999864111 001111112344556799999764
No 224
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.78 E-value=2.7e-08 Score=80.11 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=56.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|..++|||||+++|++..... . ...|+...+....+ ... .
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~---~--~~~ti~~d~~~~~i-~~~-------------------------~--- 48 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE---V--SDPTVGVDFFSRLI-EIE-------------------------P--- 48 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---C--CCceeceEEEEEEE-EEC-------------------------C---
Confidence 579999999999999999998532110 0 01122111110000 000 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+..|.......+..+|++++|+|..+.
T Consensus 49 ---~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~ 88 (211)
T cd04111 49 ---GVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR 88 (211)
T ss_pred ---CCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCH
Confidence 0115789999999999987766777899999999999875
No 225
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.78 E-value=4.1e-08 Score=76.24 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=44.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc---cch-----hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD---CPG-----HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e---~l~-----~~il~~~~~nk~d~~~ 167 (182)
..+.++||||..+|.......+..+|++++|+|..+..-.....+ .+. ..++.+.+.||+|+.+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 568899999999998877778899999999999987521111110 011 1234456799999754
No 226
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.77 E-value=3.7e-08 Score=76.76 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=32.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.+.||||..+|.......+..+|++|+|+|..+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 85 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCH
Confidence 5788999999999987666677899999999999874
No 227
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.76 E-value=3.1e-08 Score=77.20 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=43.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc-c---c-h--hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD-C---P-G--HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e-~---l-~--~~il~~~~~nk~d~~~ 167 (182)
.++.+.||||+++|..........+|++|+|+|..+..-.....+ . + . ..++.....||+|+.+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 678899999999998766667789999999999987520000111 0 1 0 1133446699999764
No 228
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=2.3e-08 Score=84.11 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=54.0
Q ss_pred eEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCc
Q psy1174 20 PGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGR 99 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
|+++|.+|+|||||+++|++.... .....+.|++.....+.+.. .+... +..-+.. .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~---~~n~pftTi~p~~g~v~v~d----~r~~~-------------l~~~~~~---~ 57 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE---AANYPFCTIEPNVGIVPVPD----ERLDK-------------LAEIVKP---K 57 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc---cccccccchhceeeeEEecc----chhhh-------------HHHHhCC---c
Confidence 589999999999999999975321 11112333333222111100 00000 0000000 0
Q ss_pred ccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 100 FQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 100 ~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
..-..++.++|+||.. .+.......++.+|+++.|||+.+
T Consensus 58 k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 58 KIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 0111469999999942 344456667799999999999964
No 229
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.75 E-value=1.7e-08 Score=75.43 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=67.5
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+++++|++++|||||+++|-|...- ..-|....|.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-------ykKTQAve~~-------------------------------------- 37 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-------YKKTQAVEFN-------------------------------------- 37 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-------hcccceeecc--------------------------------------
Confidence 5899999999999999999874321 1123333220
Q ss_pred cccccceEEEeeCCC----hhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchhh-hHH
Q psy1174 99 RFQLVRHVSFVDCPG----HDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAVM-DAA 169 (182)
Q Consensus 99 ~~~~~~~i~lIDtPG----h~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~~-~~~ 169 (182)
.=..||||| |..+.+.++..++.+|+.++|-+++++. ++...+. .-....++.|+|+. |++
T Consensus 38 ------d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~----s~f~p~f~~~~~k~vIgvVTK~DLaed~d 107 (148)
T COG4917 38 ------DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE----SRFPPGFLDIGVKKVIGVVTKADLAEDAD 107 (148)
T ss_pred ------CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc----ccCCcccccccccceEEEEecccccchHh
Confidence 113589999 5677778888899999999999999872 1111111 01133458999987 666
Q ss_pred HHhhh
Q psy1174 170 LLLIG 174 (182)
Q Consensus 170 ~~~~~ 174 (182)
+-+..
T Consensus 108 I~~~~ 112 (148)
T COG4917 108 ISLVK 112 (148)
T ss_pred HHHHH
Confidence 55544
No 230
>PTZ00258 GTP-binding protein; Provisional
Probab=98.75 E-value=3.3e-08 Score=86.88 Aligned_cols=101 Identities=17% Similarity=0.047 Sum_probs=55.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|.+|+|||||+++|++.... .....+.|+......+.+.+. .......++.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~---v~n~pftTi~p~~g~v~~~d~--r~~~l~~~~~---------------- 78 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVP---AENFPFCTIDPNTARVNVPDE--RFDWLCKHFK---------------- 78 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCccc---ccCCCCCcccceEEEEecccc--hhhHHHHHcC----------------
Confidence 3456999999999999999999864321 111122232222211111000 0000000000
Q ss_pred CCCcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
....-..++.++||||.. .+.......++.+|++++|||+.+
T Consensus 79 --~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 79 --PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred --CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 000111569999999952 244456677899999999999964
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.74 E-value=6.7e-09 Score=82.71 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+|+++|++|+|||||+++|+|.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 56999999999999999999974
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=98.74 E-value=6.5e-09 Score=90.86 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...+.|+++|..|+|||||+|+|++...- .+.+-=-|.+...-.+.+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~---~~d~LFATLdpttR~~~l------------------------------ 236 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY---VADQLFATLDPTTRRIEL------------------------------ 236 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee---ccccccccccCceeEEEe------------------------------
Confidence 35677999999999999999999864310 000000011110000000
Q ss_pred CCCCcccccceEEEeeCCCh---------hHHHHHHHhccccCCeEEEEEEcCCCcccccccc---cch----hhHHHHh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD---CPG----HDILMAT 158 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh---------~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e---~l~----~~il~~~ 158 (182)
..++++.+-||-|+ +.|.. ++.....||..+.|||+.++....+... .|. ..++...
T Consensus 237 ------~~g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~ 309 (411)
T COG2262 237 ------GDGRKVLLTDTVGFIRDLPHPLVEAFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIIL 309 (411)
T ss_pred ------CCCceEEEecCccCcccCChHHHHHHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 11278999999997 23443 5667789999999999998733322221 110 1134556
Q ss_pred Hhccchhhh
Q psy1174 159 MLNGAAVMD 167 (182)
Q Consensus 159 ~~nk~d~~~ 167 (182)
.+||+|...
T Consensus 310 v~NKiD~~~ 318 (411)
T COG2262 310 VLNKIDLLE 318 (411)
T ss_pred EEecccccC
Confidence 799999653
No 233
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.73 E-value=4.2e-08 Score=79.46 Aligned_cols=115 Identities=13% Similarity=-0.022 Sum_probs=68.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|..|+|||||+.+++.... ..+ ...|+...+....+ .. .
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f---~~~--~~~tig~~~~~~~~-~~------------------------~-- 58 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF---EKK--YEPTIGVEVHPLDF-FT------------------------N-- 58 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC---CCc--cCCccceeEEEEEE-EE------------------------C--
Confidence 5567899999999999999999873211 001 11122111110000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc------hhhHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP------GHDILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l------~~~il~~~~~nk~d~~~ 167 (182)
.....+.+.||||..+|..........+|++|+|+|..+..-.....+.+ ...+..+.+.||+|+..
T Consensus 59 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 59 ------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred ------CeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 01257899999999999876555678999999999999752000001100 01234456689999753
No 234
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.73 E-value=4.4e-08 Score=78.70 Aligned_cols=84 Identities=8% Similarity=0.076 Sum_probs=56.6
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.|+++|..++|||||+.++....- ..+ ...|+...+....+ .. .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~--~~~Ti~~~~~~~~i-~~--------------------------~---- 45 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF---CEA--CKSGVGVDFKIKTV-EL--------------------------R---- 45 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCc--CCCcceeEEEEEEE-EE--------------------------C----
Confidence 478999999999999999984221 111 11222222210000 00 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||+++|........+.+|++|+|+|.++.
T Consensus 46 --~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~ 85 (202)
T cd04120 46 --GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK 85 (202)
T ss_pred --CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH
Confidence 0126789999999999998777778999999999999975
No 235
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.72 E-value=1.5e-08 Score=87.23 Aligned_cols=86 Identities=21% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..-.|+++|.+|+|||||+++|++.... .......|.......+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~---va~y~fTT~~p~ig~v~-------------------------------- 200 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLVPNLGVVR-------------------------------- 200 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcc---ccCCCCCccCCEEEEEE--------------------------------
Confidence 3457999999999999999999863210 00000111111000000
Q ss_pred CCCcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....++.++||||.. .+.....+.+..+|++++|+|+...
T Consensus 201 ----~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~ 248 (329)
T TIGR02729 201 ----VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPL 248 (329)
T ss_pred ----eCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccc
Confidence 0012679999999973 2444456667789999999999853
No 236
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.72 E-value=3.8e-08 Score=75.97 Aligned_cols=64 Identities=13% Similarity=-0.035 Sum_probs=43.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccch------hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCPG------HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l~------~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+..|.......+..+|++|+|+|..+.. .+......+. ..++.....||+|+..
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 57889999999998876666778999999999998752 1111111110 0133456799999764
No 237
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.70 E-value=5.4e-08 Score=80.81 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....+|+++|++|+|||||+|+|+|.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 35578999999999999999999975
No 238
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.69 E-value=1.5e-08 Score=77.61 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=28.5
Q ss_pred ceEEEeeCCChhHH----HHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDIL----MATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f----~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.||||||..+. ...+...+..+|++|+|+++...
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~ 141 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD 141 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc
Confidence 56999999998531 12345556899999999999986
No 239
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.69 E-value=9.6e-08 Score=75.46 Aligned_cols=112 Identities=10% Similarity=0.039 Sum_probs=67.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|..++|||||+.++....- ..+ ...|+...+.. .+ ..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f---~~~--~~~t~~~~~~~-~~-~~~---------------------------- 47 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF---PKE--YIPTVFDNYSA-QT-AVD---------------------------- 47 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC---CcC--CCCceEeeeEE-EE-EEC----------------------------
Confidence 46799999999999999999984221 011 11122111110 00 000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc-c---ch---hhHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD-C---PG---HDILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e-~---l~---~~il~~~~~nk~d~~~ 167 (182)
.....+.+.||||++.|....-...+.+|++|+|.|..+..-.....+ . +. ..++.+.+.||.|+.+
T Consensus 48 ----~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 48 ----GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred ----CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 012568899999999998766666789999999999987520000000 0 00 1133456699999864
No 240
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.68 E-value=8.9e-08 Score=76.11 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=68.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|..++|||||+.++..... ..+....+........+.+ +
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~i~~---~--------------------------- 51 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST---ESPYGYNMGIDYKTTTILL---D--------------------------- 51 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCcceeEEEEEEEEE---C---------------------------
Confidence 347899999999999999999984211 1110011111111100000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh--hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH--DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~--~il~~~~~nk~d~~~ 167 (182)
.....+.+.||||+.+|..........+|++|||+|..+.. +.....+...+ .+....+.||.|+..
T Consensus 52 -----~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 52 -----GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred -----CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 11267899999999999986666678999999999998752 11110111111 133345689999764
No 241
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.68 E-value=7.8e-08 Score=83.82 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=55.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|.+|+|||||+++|++.... .....+.|++.....+.+.. .+-+.+. .-++
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~---v~nypftTi~p~~G~~~v~d-----------------~r~~~l~---~~~~ 59 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE---AANYPFCTIEPNVGVVPVPD-----------------PRLDKLA---EIVK 59 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe---ecccccccccceEEEEEecc-----------------ccchhhH---HhcC
Confidence 56999999999999999999975321 11112333332221111100 0000000 0000
Q ss_pred CcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 98 GRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
....-..++.++|+||.. .+....+..++.+|+++.|||+.+
T Consensus 60 p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 60 PKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 001111479999999942 244456677899999999999964
No 242
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.68 E-value=9.1e-08 Score=73.21 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=32.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||..+|..........+|++++|+|..+.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE 85 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH
Confidence 5688999999999888777778999999999998864
No 243
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.67 E-value=9.3e-08 Score=79.13 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=31.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||+.+|.......+..+|++|+|+|..+.
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~ 84 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR 84 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH
Confidence 6789999999999887666667889999999999864
No 244
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.66 E-value=1.3e-07 Score=75.72 Aligned_cols=90 Identities=13% Similarity=-0.016 Sum_probs=57.7
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHh-cCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFP 90 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~-g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (182)
+.+....+|+++|+.|+|||||++.++ +..... ...|+...+....+ ..
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~------~~~t~~~~~~~~~~-~~----------------------- 53 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKK------YIPTLGVEVHPLKF-YT----------------------- 53 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCC------CCCccceEEEEEEE-EE-----------------------
Confidence 445566789999999999999997654 432211 11122221111000 00
Q ss_pred ccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 91 CLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.+.||||+.+|..........+|++++|+|..+.
T Consensus 54 ---------~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 94 (215)
T PTZ00132 54 ---------NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR 94 (215)
T ss_pred ---------CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence 01126789999999998876655556789999999999875
No 245
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.66 E-value=9.6e-08 Score=77.10 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
++|.++|..|+||||++|.|+|..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999999854
No 246
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.65 E-value=8.9e-08 Score=75.38 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=41.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-cccc----ccccchh--hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPE----IVDCPGH--DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~q----t~e~l~~--~il~~~~~nk~d~~~ 167 (182)
..+.+.||||...|..........+|++++|.|..+.. +... ..+...+ .++.+.+.||+|+.+
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 57899999999988765555668899999999988641 1100 0010000 133446689999864
No 247
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.61 E-value=2.3e-07 Score=73.24 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=57.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|..++|||||+.++....- ..+ ...|+...+.. .+ ..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f---~~~--~~pT~~~~~~~-~~-~~---------------------------- 48 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF---PEN--YVPTVFENYTA-SF-EI---------------------------- 48 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC---CCc--cCCceeeeeEE-EE-EE----------------------------
Confidence 446799999999999999999984321 111 11122111110 00 00
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.+.||+|.+.|........+.+|++|||.|..+.
T Consensus 49 ----~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~ 89 (182)
T cd04172 49 ----DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 89 (182)
T ss_pred ----CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH
Confidence 01125689999999999987666777899999999999875
No 248
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.61 E-value=6.4e-08 Score=81.02 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=64.6
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
++++.||.+.|.+|+|||||+|+|.+.... .++...+ |.+|.- .+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~----------~v~~vg~-----------~t~~~~----------~~~~~- 83 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK----------EVSKVGV-----------GTDITT----------RLRLS- 83 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc----------eeeeccc-----------CCCchh----------hHHhh-
Confidence 567889999999999999999999842210 1110000 000000 00011
Q ss_pred CCCCCcccccceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCCcccccccccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD 153 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~ 153 (182)
...+.+++.||||..+ +......-+...|.+++++++.+. -.....+++++.
T Consensus 84 -------~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dr-aL~~d~~f~~dV 142 (296)
T COG3596 84 -------YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDR-ALGTDEDFLRDV 142 (296)
T ss_pred -------ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCc-cccCCHHHHHHH
Confidence 1226799999999865 777777888999999999999986 444445555554
No 249
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.60 E-value=1.8e-07 Score=73.43 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=55.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|..++|||||+.++.+..- ..+ ...|+...+.. .+ ..+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~--~~~t~~~~~~~-~~-~~~----------------------------- 45 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PET--YVPTVFENYTA-SF-EID----------------------------- 45 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCC--cCCceEEEEEE-EE-EEC-----------------------------
Confidence 3689999999999999999985321 111 11122111110 00 000
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||++.|........+.+|++|+|.|..+.
T Consensus 46 ---~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~ 85 (178)
T cd04131 46 ---EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP 85 (178)
T ss_pred ---CEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh
Confidence 1125688999999999987666667899999999999875
No 250
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.60 E-value=1.8e-07 Score=73.61 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=32.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||+|+..|..........+|++++|+|+.+.
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~ 85 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK 85 (182)
T ss_pred EEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH
Confidence 5789999999999988777778999999999999875
No 251
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.60 E-value=5.3e-08 Score=78.37 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||+|.+.|..........+|++|+|.|..+.
T Consensus 54 ~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~ 90 (202)
T cd04102 54 FFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR 90 (202)
T ss_pred EEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh
Confidence 5789999999999987766777899999999999875
No 252
>KOG0073|consensus
Probab=98.59 E-value=4.3e-08 Score=76.24 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=74.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|-++|.-||||||++..|.+...+ .+....+|.-.++
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~--------~i~pt~gf~Iktl-------------------------------- 55 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTD--------TISPTLGFQIKTL-------------------------------- 55 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCcc--------ccCCccceeeEEE--------------------------------
Confidence 578999999999999999999985432 1111222211000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH--------HHhHhccchhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL--------MATMLNGAAVM 166 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il--------~~~~~nk~d~~ 166 (182)
....+++++-|..|...+..-.-.....+|+.|+|||+.+-.+..++...|.+++. +..+.||+|+.
T Consensus 56 ---~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 56 ---EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ---EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 11228899999999998888888888999999999999876444455554444322 22568999877
No 253
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.58 E-value=1.7e-07 Score=83.38 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=52.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|.+|+|||||+++|++.... .......|....+..+.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k---Ia~ypfTTl~PnlG~v~~--------------------------------- 202 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK---IANYHFTTLVPNLGVVET--------------------------------- 202 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc---cccCCcceeceEEEEEEE---------------------------------
Confidence 36999999999999999999863210 000112222221110000
Q ss_pred CcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 98 GRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
.....+.++|+||.. .+.....+.+..+|++|+|||+..
T Consensus 203 ---~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 203 ---DDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred ---eCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 012679999999963 233445566778999999999964
No 254
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.57 E-value=3.4e-07 Score=74.71 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=32.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||+|.+.|....-.....+|++|+|+|..+.
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~ 85 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRP 85 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCH
Confidence 5688899999999988777778999999999999975
No 255
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.56 E-value=8.9e-08 Score=73.38 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+|+++|.+|+|||||+|+|.+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 467899999999999999999874
No 256
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.56 E-value=1.9e-07 Score=73.40 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=67.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|..++|||+|+.++....- ..+ ...|+...+. ..+ ..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~--~~~Ti~~~~~-~~~-~~~----------------------------- 45 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF---PTD--YIPTVFDNFS-ANV-SVD----------------------------- 45 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCC--CCCcceeeeE-EEE-EEC-----------------------------
Confidence 4689999999999999999984221 111 1112211110 000 000
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccc----cccccch--hhHHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTP----EIVDCPG--HDILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~----qt~e~l~--~~il~~~~~nk~d~~~ 167 (182)
....++.+.||+|+++|........+.+|++|||.|..+.. +.. +..+.-. ..++.....||.|+.+
T Consensus 46 ---~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 46 ---GNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred ---CEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 11267899999999999887777789999999999998642 111 1111000 1133445689999854
No 257
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.55 E-value=7.6e-08 Score=75.04 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|++|+|||||+|+|++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 66899999999999999999975
No 258
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.52 E-value=2.9e-07 Score=69.67 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.|+||+..|..........+|++|+|.|.++.
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~ 84 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE 84 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 6789999999999887666777999999999999864
No 259
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.50 E-value=9.1e-08 Score=88.16 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=65.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|++|+|||||.|+|+|... +..-=.|+|+...-..+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~~---------------------------------- 46 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKLK---------------------------------- 46 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEEE----------------------------------
Confidence 4599999999999999999997531 011114555544322111
Q ss_pred CcccccceEEEeeCCChhHHH--------HHHHhccccCCeEEEEEEcCCCc----ccccccccchhhHHHHhHhccchh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILM--------ATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGHDILMATMLNGAAV 165 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~--------~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~~il~~~~~nk~d~ 165 (182)
..++.+.++|.||--++. ..-.---..+|+++-||||..=+ ..-|..| ..+.+...+|.+|+
T Consensus 47 ---~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE---~g~p~ilaLNm~D~ 120 (653)
T COG0370 47 ---YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE---LGIPMILALNMIDE 120 (653)
T ss_pred ---ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH---cCCCeEEEeccHhh
Confidence 112679999999952211 11011126789999999998632 2223333 33445556899887
Q ss_pred hhH
Q psy1174 166 MDA 168 (182)
Q Consensus 166 ~~~ 168 (182)
...
T Consensus 121 A~~ 123 (653)
T COG0370 121 AKK 123 (653)
T ss_pred HHh
Confidence 643
No 260
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.50 E-value=6e-07 Score=73.80 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=56.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
...|+++|..++|||+|+..+....-. .+ ...|+...+.. .+ .. .
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~---~~--y~pTi~~~~~~-~i-~~--------------------------~-- 57 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP---ET--YVPTVFENYTA-GL-ET--------------------------E-- 57 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC---CC--cCCceeeeeEE-EE-EE--------------------------C--
Confidence 356899999999999999999843211 01 11122111110 00 00 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||.+.|..........+|++|||.|..+.
T Consensus 58 ----~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~ 97 (232)
T cd04174 58 ----EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP 97 (232)
T ss_pred ----CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh
Confidence 1125688999999999987666778999999999999875
No 261
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.50 E-value=4.4e-07 Score=77.59 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++|+++|.+|+|||||+|+|+|..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999853
No 262
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.49 E-value=5.3e-07 Score=73.10 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=27.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccc-cCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAA-VMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~-~aD~ailVVda~~g 140 (182)
..+.++||||...+... .... .+|++++|+|+.+.
T Consensus 50 ~~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~ 85 (221)
T cd04148 50 STLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDR 85 (221)
T ss_pred EEEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCH
Confidence 67899999999844332 2344 89999999999875
No 263
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.47 E-value=6.2e-07 Score=71.41 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=69.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|..|+|||||+++|.+..... ....|+...+........
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~------------------------------ 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-----GYPPTIGNLDPAKTIEPY------------------------------ 50 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-----cCCCceeeeeEEEEEEeC------------------------------
Confidence 679999999999999999998543210 011122111111000000
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-----h---hHHHHhHhccchhhhH
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-----H---DILMATMLNGAAVMDA 168 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-----~---~il~~~~~nk~d~~~~ 168 (182)
....++.++||+|+.+|..-+......++++++++|........+..+.+. + ..+...+.||+|+.+.
T Consensus 51 ---~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 51 ---RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred ---CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 001558889999999999877788899999999999986211111111110 1 1334456899997753
No 264
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.47 E-value=5e-07 Score=79.74 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.4
Q ss_pred ceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCC
Q psy1174 104 RHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 104 ~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
.++.++||||.. .+....+..++.+|++++|||+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 468999999942 244456677899999999999974
No 265
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.47 E-value=2e-07 Score=74.78 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=44.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-----cccch--hhHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-----VDCPG--HDILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-----~e~l~--~~il~~~~~nk~d~~ 166 (182)
..+.+.||||+.+|........+.+|++|+|+|+.+.. .-+. .++.. ..+....+.||+|+.
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~-S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 67899999999999887777889999999999999862 1110 11111 113445668999964
No 266
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.47 E-value=2.6e-07 Score=76.40 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=39.0
Q ss_pred ceEEEeeCCChhH---------H---H-HHHHhccc-cCCeEEEEEEcCCCccccccc-ccchhh----HHHHhHhccch
Q psy1174 104 RHVSFVDCPGHDI---------L---M-ATMLNGAA-VMDAALLLIGCDNAAKTPEIV-DCPGHD----ILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~~---------f---~-~~~~~~~~-~aD~ailVVda~~g~~~~qt~-e~l~~~----il~~~~~nk~d 164 (182)
-.+++|||||... + + ..+..++. ..+.+++|+||..+ +..+.. +..++. ......+||+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d-~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD-LANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-CCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 5699999999842 1 1 12334445 45699999999988 666542 322111 12224589999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
..+
T Consensus 204 ~~~ 206 (240)
T smart00053 204 LMD 206 (240)
T ss_pred CCC
Confidence 764
No 267
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.45 E-value=2.5e-07 Score=72.74 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.+++++|.+|+|||||+|+|++..
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 579999999999999999999743
No 268
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.45 E-value=7.1e-07 Score=70.01 Aligned_cols=64 Identities=6% Similarity=0.026 Sum_probs=39.5
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-----cccch--hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-----VDCPG--HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-----~e~l~--~~il~~~~~nk~d~~~ 167 (182)
..+.+.||||+..|........+.+|+++++.|.....-.... .+... ..+....+.||+|+.+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 4578899999987765433456889999999998764211000 00000 1133446699999754
No 269
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.40 E-value=8.5e-07 Score=76.16 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.2
Q ss_pred ceEEEeeCCCh----hH---HHHHHHhccccCCeEEEEEEcCC
Q psy1174 104 RHVSFVDCPGH----DI---LMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 104 ~~i~lIDtPGh----~~---f~~~~~~~~~~aD~ailVVda~~ 139 (182)
.++.++||||. .. +....+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46999999997 22 33345667899999999999974
No 270
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.39 E-value=3.5e-07 Score=72.09 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.0
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+++++|.+|+|||||+|+|.+.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 271
>KOG0090|consensus
Probab=98.38 E-value=4.7e-07 Score=73.34 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=30.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccc---cCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAA---VMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~---~aD~ailVVda~~g 140 (182)
..+++||-|||.+.......-+. .+-++++|||+..-
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f 121 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF 121 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc
Confidence 44899999999998887766664 88899999999864
No 272
>KOG1489|consensus
Probab=98.37 E-value=8e-07 Score=75.84 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.7
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+-.|+++|-+|+|||||+++|+.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~ 218 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSR 218 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhc
Confidence 44689999999999999999984
No 273
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.34 E-value=5.7e-07 Score=68.79 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...+++++|++|+|||||+|+|++.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc
Confidence 3467999999999999999999974
No 274
>KOG0080|consensus
Probab=98.33 E-value=9.3e-07 Score=68.91 Aligned_cols=111 Identities=12% Similarity=0.055 Sum_probs=72.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeecc--ccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGY--ANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+.|.+||.+|.|||+|+-.++...-+ .+ .-.|+...+ ..+.+ .
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd---~~--~~~tIGvDFkvk~m~v-----------------------------d 56 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD---DL--HPTTIGVDFKVKVMQV-----------------------------D 56 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC---cc--CCceeeeeEEEEEEEE-----------------------------c
Confidence 467999999999999999988743211 11 112232222 11222 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccc----cchhhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVD----CPGHDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e----~l~~~il~~~~~nk~d~~ 166 (182)
....++.+-||.|.++|..-.-+..+.|-++|+|-|...-. .....+| +-+|.+.-+...||+|..
T Consensus 57 ------g~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 57 ------GKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred ------CceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 01167999999999999987777779999999999998631 1111111 224667777889999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 131 s 131 (209)
T KOG0080|consen 131 S 131 (209)
T ss_pred h
Confidence 4
No 275
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.32 E-value=8.5e-07 Score=74.91 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.+||.|+|.+|+|||||++.|.+..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998643
No 276
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.32 E-value=8e-07 Score=76.03 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=55.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
-.|++||.+++|||||+++|++..+. .-+..|++.+ +.|. ...+.+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~se----------va~y~FTTl~---------~VPG-------------~l~Y~g-- 109 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSE----------VADYPFTTLE---------PVPG-------------MLEYKG-- 109 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcc----------ccccCceecc---------cccc-------------eEeecC--
Confidence 46899999999999999999975421 0111121111 1110 111233
Q ss_pred CcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
-+|-++|+||.- .--+++++.++.||.+++|+|+.+.
T Consensus 110 ------a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 110 ------AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ------ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 789999999952 1224577778999999999999976
No 277
>KOG0394|consensus
Probab=98.31 E-value=6.4e-07 Score=71.06 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+..+.|.++|.+|+|||+|++.+... +-+.+...|+...+.+-.++- +
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~-----kF~~qykaTIgadFltKev~V-------------------d-------- 54 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNK-----KFSQQYKATIGADFLTKEVQV-------------------D-------- 54 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHH-----HHHHHhccccchhheeeEEEE-------------------c--------
Confidence 45678999999999999999999731 223344555554443222100 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchhh-------HHHHhHhccc
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGHD-------ILMATMLNGA 163 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~~-------il~~~~~nk~ 163 (182)
+ ....+-+=||.|.++|-.--..--+.||.++||-|.+... +...-.|+|.++ .+-+.+.||+
T Consensus 55 ~------~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKi 128 (210)
T KOG0394|consen 55 D------RSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKI 128 (210)
T ss_pred C------eEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccc
Confidence 0 0123455899999999874433348999999998887531 222223333332 2233668999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+.+
T Consensus 129 D~~~ 132 (210)
T KOG0394|consen 129 DVDG 132 (210)
T ss_pred cCCC
Confidence 9854
No 278
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.29 E-value=1.4e-06 Score=71.07 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+...|+|+|+.++|||||+|.|++.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999985
No 279
>KOG0094|consensus
Probab=98.27 E-value=1.3e-06 Score=69.88 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=80.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|..+.|||+|+.++....-+ ...+-|+.+.|...++|...
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-----~~YqATIGiDFlskt~~l~d----------------------------- 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-----NTYQATIGIDFLSKTMYLED----------------------------- 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-----ccccceeeeEEEEEEEEEcC-----------------------------
Confidence 56899999999999999999843222 12445676666544442211
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh--------hHHHHhHhccchhhhHH
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--------DILMATMLNGAAVMDAA 169 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--------~il~~~~~nk~d~~~~~ 169 (182)
-..++-+=||.|+++|..-+-+.++.+.+||+|-|..+-.-..+|..-|+- ..+.+...||.|+.+..
T Consensus 69 ----~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 69 ----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred ----cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 015677899999999999888889999999999999874112222221111 13344568999999866
Q ss_pred HHhhh
Q psy1174 170 LLLIG 174 (182)
Q Consensus 170 ~~~~~ 174 (182)
+.-++
T Consensus 145 qvs~e 149 (221)
T KOG0094|consen 145 QVSIE 149 (221)
T ss_pred hhhHH
Confidence 55443
No 280
>PLN00023 GTP-binding protein; Provisional
Probab=98.27 E-value=3.3e-06 Score=72.79 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=32.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.|.||+|++.|....-...+.+|++|+|+|..+-
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr 119 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH
Confidence 5689999999999988777778999999999999864
No 281
>KOG0098|consensus
Probab=98.23 E-value=1.3e-06 Score=69.39 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=69.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeee--ccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL--GYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
....+.++|..+.|||.|+-++....- ..- .-.|+-+ +...+.+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF---~~~--hd~TiGvefg~r~~~id---------------------------- 51 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRF---QPV--HDLTIGVEFGARMVTID---------------------------- 51 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCc---ccc--ccceeeeeeceeEEEEc----------------------------
Confidence 445789999999999999999874211 100 0022222 22222220
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccc---cccccchhhHHHHhHhccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTP---EIVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~---qt~e~l~~~il~~~~~nk~d~~ 166 (182)
...-++.+-||.||+.|..-+-+.-+.|-+||||-|...-+ +.. ..+++..+.+.-+...||+|+.
T Consensus 52 -------~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 52 -------GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred -------CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 01157899999999999998888889999999999987542 111 1112111222233458999987
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 125 ~ 125 (216)
T KOG0098|consen 125 A 125 (216)
T ss_pred c
Confidence 5
No 282
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.23 E-value=1.1e-06 Score=77.88 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+.|+|+|++++|||||+++|.++
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhh
Confidence 56899999999999999999976
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.22 E-value=1.7e-06 Score=74.66 Aligned_cols=60 Identities=17% Similarity=-0.027 Sum_probs=36.0
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccchhhHHHHhHhccchhhh
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
+..+.||||+|...-.. ..+..||.+++|++...|. ++...+..+. +.-...+||+|..+
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E--~aDIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGIME--LADLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhhhh--hhheEEeehhcccc
Confidence 37799999999863222 2367899999998744441 2221111111 11246699999764
No 284
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.21 E-value=1.6e-06 Score=65.31 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|.+|+|||||+|+|.+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.20 E-value=4.5e-06 Score=77.60 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+|+++|.+|+|||||+|+|+|.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGe 141 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGE 141 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999999975
No 286
>KOG0075|consensus
Probab=98.19 E-value=6.8e-07 Score=68.72 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=47.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh---------HHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD---------ILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~---------il~~~~~nk~d~~~ 167 (182)
-.+-+-|.||...|.....+.-+.+++++++|||.+.+-....++-| |. +.+..|.||+|..+
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL-~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSEL-HDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHH-HHHhcchhhcCCcEEEecccccCcc
Confidence 45778999999999999888889999999999999854333334433 22 34557789998765
No 287
>PRK12288 GTPase RsgA; Reviewed
Probab=98.19 E-value=1.4e-06 Score=75.67 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++++|++|+|||||+|+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999999643
No 288
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.18 E-value=1.7e-06 Score=71.28 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=50.2
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|.+.|+.+|||||....+......+ +...-|.|.+.....+..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~--dT~~L~~T~~ve~~~v~~---------------------------------- 44 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR--DTLRLEPTIDVEKSHVRF---------------------------------- 44 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG--GGGG-----SEEEEEEEC----------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch--hccccCCcCCceEEEEec----------------------------------
Confidence 37899999999999999887533210 111123344333221111
Q ss_pred cccccceEEEeeCCChhHHHHH-----HHhccccCCeEEEEEEcCCC
Q psy1174 99 RFQLVRHVSFVDCPGHDILMAT-----MLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~-----~~~~~~~aD~ailVVda~~g 140 (182)
.....+++.|+||+.+|... ...-++.+++.|+|+|+...
T Consensus 45 --~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~ 89 (232)
T PF04670_consen 45 --LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD 89 (232)
T ss_dssp --TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S
T ss_pred --CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc
Confidence 11267999999999877664 23345888999999999944
No 289
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.17 E-value=2.8e-06 Score=71.71 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...+++++|.+|+|||||+|+|.+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999874
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.15 E-value=3.4e-06 Score=69.56 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=28.3
Q ss_pred ceEEEeeCCChhHHHH------HHHhccc--cCCeEEEEEEcCCCcccccccccchhh-----------HHHHhHhccch
Q psy1174 104 RHVSFVDCPGHDILMA------TMLNGAA--VMDAALLLIGCDNAAKTPEIVDCPGHD-----------ILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~------~~~~~~~--~aD~ailVVda~~g~~~~qt~e~l~~~-----------il~~~~~nk~d 164 (182)
..+.++||||+..+.. .+...+. ..=++++++|+..- .....++... ++....+||+|
T Consensus 91 ~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~---~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC---SDPSKFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp -SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG----SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc---cChhhHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 3799999999865443 3333343 23467888999842 1222222111 22224599999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 168 l~~ 170 (238)
T PF03029_consen 168 LLS 170 (238)
T ss_dssp GS-
T ss_pred ccc
Confidence 886
No 291
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=1.5e-06 Score=73.80 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
...+++|++|.|||||+|+|.+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchh
Confidence 357899999999999999998643
No 292
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.14 E-value=2.9e-06 Score=71.15 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...+++++|.+|+|||||+|+|.+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 293
>KOG0076|consensus
Probab=98.12 E-value=2.2e-06 Score=67.38 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=70.9
Q ss_pred ccccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCc
Q psy1174 11 WVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFP 90 (182)
Q Consensus 11 ~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (182)
+|..+.-.+|.|+|.-+|||||++.++=.........-.-..++...+.-.-++.
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~------------------------- 65 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE------------------------- 65 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-------------------------
Confidence 4555666789999999999999999884211000000000011111111000000
Q ss_pred ccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccch----hhHHHHhHhcc
Q psy1174 91 CLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPG----HDILMATMLNG 162 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~----~~il~~~~~nk 162 (182)
-.+.++.|.|--|......-....-+.++++++||||.+.++.... +.... ..+....+.||
T Consensus 66 ----------v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 66 ----------VCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ----------eccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 0026799999999988887555555899999999999984322211 11111 22456678999
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|+.+
T Consensus 136 qd~q~ 140 (197)
T KOG0076|consen 136 QDLQN 140 (197)
T ss_pred hhhhh
Confidence 98765
No 294
>KOG0084|consensus
Probab=98.10 E-value=3.5e-06 Score=67.32 Aligned_cols=117 Identities=9% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|.+||..|.|||=|+-++.+. ++.++ ...|+...+..-++ +. .
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~---~f~e~--~~sTIGVDf~~rt~-e~--------------------------~- 54 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDD---TFTES--YISTIGVDFKIRTV-EL--------------------------D- 54 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccC---Ccchh--hcceeeeEEEEEEe-ee--------------------------c-
Confidence 4567999999999999999988742 22222 33345444432111 00 1
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh---hHHHHhHhccchhhhH
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH---DILMATMLNGAAVMDA 168 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~---~il~~~~~nk~d~~~~ 168 (182)
...-++.+=||.|+++|..-+.+.-+.|+++|+|-|..+-. +.....|+-+| .+...+..||+|+.+.
T Consensus 55 -----gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 55 -----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred -----ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 11256888999999999988888889999999999998632 22222222222 2344456899998764
Q ss_pred HH
Q psy1174 169 AL 170 (182)
Q Consensus 169 ~~ 170 (182)
.+
T Consensus 130 ~~ 131 (205)
T KOG0084|consen 130 RV 131 (205)
T ss_pred ee
Confidence 33
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.10 E-value=1.9e-06 Score=71.30 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|++|+|||||+|+|++.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 46899999999999999999964
No 296
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=3e-06 Score=72.86 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..+|.|+|-+|+|||||+|+|++..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~ 156 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKK 156 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Confidence 4679999999999999999999743
No 297
>KOG0074|consensus
Probab=98.08 E-value=2.8e-06 Score=64.97 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+-+++..+|--++||||++..|.+.-. +.++...+|...++
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~--------~hltpT~GFn~k~v------------------------------- 56 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP--------RHLTPTNGFNTKKV------------------------------- 56 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh--------hhccccCCcceEEE-------------------------------
Confidence 346789999999999999999976421 33333333321111
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh--------hHHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--------DILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--------~il~~~~~nk~d~~ 166 (182)
++....++++-|..|......-........|+.|+|||+++..+..++-+++.. .+++..|-||+|..
T Consensus 57 ---~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 57 ---EYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred ---eecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 112237899999999987777666777889999999999875333333332211 13344678888854
No 298
>KOG0092|consensus
Probab=98.07 E-value=1.7e-06 Score=68.94 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=69.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|..++|||||+-++....-. +- ..-|+...|....+.-.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~---e~--~e~TIGaaF~tktv~~~---------------------------- 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFH---EN--IEPTIGAAFLTKTVTVD---------------------------- 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccc---cc--cccccccEEEEEEEEeC----------------------------
Confidence 3457899999999999999988742211 10 11133332321111000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc--------ccccccccchhhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA--------KTPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~--------~~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
....++-+=||.|.++|..-.-...+.|++||+|-|.++-. +..- .+.....+..+...||+|+..
T Consensus 51 -----~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL-~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 -----DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKEL-QRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred -----CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHH-HhhCCCCeEEEEecchhhhhh
Confidence 00156788999999999876666669999999999999742 1110 111112344556699999775
No 299
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.06 E-value=1.7e-05 Score=60.80 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.0
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+-||+|..... ....+|++++|.|..+-
T Consensus 47 ~~l~i~D~~g~~~~~-----~~~~~~~~ilv~d~~~~ 78 (158)
T cd04103 47 HLLLIRDEGGAPDAQ-----FASWVDAVIFVFSLENE 78 (158)
T ss_pred EEEEEEECCCCCchh-----HHhcCCEEEEEEECCCH
Confidence 568889999997532 23568999999999875
No 300
>PRK13768 GTPase; Provisional
Probab=98.03 E-value=6.3e-06 Score=68.46 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=38.3
Q ss_pred ceEEEeeCCChhHHHH------HHHhcccc--CCeEEEEEEcCCCcccccccccchh---------hHHHHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDILMA------TMLNGAAV--MDAALLLIGCDNAAKTPEIVDCPGH---------DILMATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~------~~~~~~~~--aD~ailVVda~~g~~~~qt~e~l~~---------~il~~~~~nk~d~~ 166 (182)
..+.++||||...+.. .+...+.. ++++++|+|+..+ ......+.... .+.....+||+|..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA-KTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh-CCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3689999999755321 22222322 8999999999876 44433221111 11233568999987
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
+.
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 53
No 301
>KOG0078|consensus
Probab=98.02 E-value=1.7e-05 Score=63.98 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=71.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|.++|-+++|||.++-++....-. .....|+.+.+...++ .++ +
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~-----~~~~sTiGIDFk~kti-~l~--------------------------g 58 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN-----TSFISTIGIDFKIKTI-ELD--------------------------G 58 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc-----CCccceEEEEEEEEEE-EeC--------------------------C
Confidence 3467899999999999999999732110 0122344444432222 000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc--------hh---hHHHHhHhccch
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP--------GH---DILMATMLNGAA 164 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l--------~~---~il~~~~~nk~d 164 (182)
..-.+-+.||.|.++|..-.-+..+.|++++||+|.... ++-+.+ .| .+..+.+.||+|
T Consensus 59 ------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne----~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 59 ------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE----KSFENIRNWIKNIDEHASDDVVKILVGNKCD 128 (207)
T ss_pred ------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch----HHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence 114577899999999999888888999999999999865 222211 01 133345689999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 129 ~~~ 131 (207)
T KOG0078|consen 129 LEE 131 (207)
T ss_pred ccc
Confidence 876
No 302
>PRK12289 GTPase RsgA; Reviewed
Probab=98.01 E-value=4.9e-06 Score=72.42 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|++|+|||||+|+|++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4799999999999999999964
No 303
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.99 E-value=4e-06 Score=70.82 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++++|++|+|||||+|+|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 568999999999999999999743
No 304
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.98 E-value=6.9e-06 Score=71.56 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+|.++|.+|+|||||+|+|++.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999964
No 305
>KOG0070|consensus
Probab=97.97 E-value=1.2e-06 Score=69.16 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=48.6
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh--------hHHHHhHhccchhhh
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--------DILMATMLNGAAVMD 167 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--------~il~~~~~nk~d~~~ 167 (182)
+.++++-|.-|+..++.-........+++|+|||+.+-++....++.|.. ..+...+.||+|+.+
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 37899999999999998888888999999999999986555555543311 123346688888663
No 306
>KOG0410|consensus
Probab=97.93 E-value=4.5e-05 Score=65.59 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhce-eeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNI-TIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...|+++|..|+|||||+++|++.... +.+ +-. |.+....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~--p~d--rLFATLDpT~h---------------------------------- 218 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY--PND--RLFATLDPTLH---------------------------------- 218 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC--ccc--hhheeccchhh----------------------------------
Confidence 4567999999999999999999854321 000 000 1111000
Q ss_pred CCCCcccccceEEEeeCCChh---------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHD---------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~---------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
...-.++..+.+.||-|+- .|.. +..-...||..+=|+|...+
T Consensus 219 --~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLeeVaeadlllHvvDiShP 270 (410)
T KOG0410|consen 219 --SAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEEVAEADLLLHVVDISHP 270 (410)
T ss_pred --hccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHHHhhcceEEEEeecCCc
Confidence 0011223678899999972 3443 34556889999999999977
No 307
>PRK13796 GTPase YqeH; Provisional
Probab=97.91 E-value=1e-05 Score=70.60 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++.++|.+|+|||||+|+|++.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 457999999999999999999853
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.91 E-value=4.2e-05 Score=64.97 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=35.4
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccchhhHHHHhHhccchhhhH
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCPGHDILMATMLNGAAVMDA 168 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l~~~il~~~~~nk~d~~~~ 168 (182)
.+.+.||||||...-. ...+..+|.++++.....+. ++....... ......++||+|....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 4789999999975322 23467789988886555431 111111111 1223467999998753
No 309
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.90 E-value=1.7e-05 Score=61.59 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
++++++|.+|+|||||+++|.+.
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 310
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.90 E-value=4.4e-05 Score=60.84 Aligned_cols=35 Identities=14% Similarity=-0.010 Sum_probs=27.9
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.+.||+|...+. .......+|++|+|.|..+.
T Consensus 66 v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~ 100 (195)
T cd01873 66 VSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASP 100 (195)
T ss_pred EEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCCh
Confidence 678999999997643 23356899999999999865
No 311
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.90 E-value=1.8e-05 Score=69.37 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++|+|+|.+|+|||||+|+|.|.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl 58 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGL 58 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 312
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.86 E-value=4.2e-05 Score=58.56 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=26.5
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.+.+.||||||.... ....+..||-+++|+....+
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~ 125 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAG 125 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCch
Confidence 367999999996533 34578889999998877643
No 313
>KOG0095|consensus
Probab=97.86 E-value=1.9e-05 Score=61.02 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=74.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+-...|+++|..|.|||-|+..+....-. . -+|-|+...+.-.++ +.
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfp---p--gqgatigvdfmiktv-ev--------------------------- 51 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFP---P--GQGATIGVDFMIKTV-EV--------------------------- 51 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCC---C--CCCceeeeeEEEEEE-EE---------------------------
Confidence 34467999999999999999999833211 0 134455555532221 00
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----cc---ccccccchhhHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KT---PEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~---~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
..++-++-+-||.|.++|..-..+.-+-|++.|||-|..-.. .- .+.+++-+..++.....||+|..|
T Consensus 52 -----~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 52 -----NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred -----CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 012367888999999999998888889999999998876431 00 111112222244445689999877
Q ss_pred H
Q psy1174 168 A 168 (182)
Q Consensus 168 ~ 168 (182)
+
T Consensus 127 r 127 (213)
T KOG0095|consen 127 R 127 (213)
T ss_pred h
Confidence 4
No 314
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.86 E-value=1.1e-05 Score=69.95 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.6
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+....+|.++|+.|+||||++|.|.+.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 445578999999999999999999975
No 315
>KOG1954|consensus
Probab=97.85 E-value=1.4e-05 Score=69.83 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=48.1
Q ss_pred ceEEEeeCCChh-----------HHHHHHHhccccCCeEEEEEEcCCCcccccccccch----hhHHHHhHhccchhhhH
Q psy1174 104 RHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILMATMLNGAAVMDA 168 (182)
Q Consensus 104 ~~i~lIDtPGh~-----------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~~~~~nk~d~~~~ 168 (182)
..+++|||||.- +|......=+..+|.++|+.|+..=.+..++++++. |--.....+||+|+++-
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCH
Confidence 579999999962 455555555688999999999986335666666553 33334467999999984
Q ss_pred HHH
Q psy1174 169 ALL 171 (182)
Q Consensus 169 ~~~ 171 (182)
.+|
T Consensus 227 qqL 229 (532)
T KOG1954|consen 227 QQL 229 (532)
T ss_pred HHH
Confidence 444
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.84 E-value=4.9e-05 Score=63.45 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=36.8
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHH---hHhccchhhhHHH
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMA---TMLNGAAVMDAAL 170 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~---~~~nk~d~~~~~~ 170 (182)
++.+.||.|-|-..---+ -...+|.+++|+-..-| -.-|... -.++-+ +.+||+|....+.
T Consensus 121 G~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~G-D~iQ~~K---aGimEiaDi~vVNKaD~~gA~~ 184 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLG-DEIQAIK---AGIMEIADIFVVNKADRPGADR 184 (266)
T ss_dssp T-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTC-CCCCTB----TTHHHH-SEEEEE--SHHHHHH
T ss_pred CCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCc-cHHHHHh---hhhhhhccEEEEeCCChHHHHH
Confidence 467888899885433322 24778999999999887 4444433 233333 6699999765443
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.3e-05 Score=68.18 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
...++++|++|+|||||+|+|++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
No 318
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.82 E-value=2.2e-06 Score=73.55 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|+.|+||||++..|.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999999874
No 319
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.82 E-value=4.2e-05 Score=66.94 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=29.0
Q ss_pred ceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++|.||-.. +....+.-++.+|+.+.||++.+.
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d 110 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFED 110 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCCC
Confidence 5789999999632 444566678999999999999753
No 320
>KOG0077|consensus
Probab=97.81 E-value=4.2e-05 Score=59.91 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=47.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH--------HHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI--------LMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i--------l~~~~~nk~d~~~ 167 (182)
-+++-+|--||..-..-.-..+..+|+++++|||.+-++....++.+.-.+ ....+.||+|...
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 678889999998888777788899999999999998655555555332211 1235689998664
No 321
>KOG0395|consensus
Probab=97.79 E-value=9.7e-06 Score=65.01 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=45.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc---ccccccccc-----hhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA---KTPEIVDCP-----GHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~---~~~qt~e~l-----~~~il~~~~~nk~d~~~ 167 (182)
..+.++||+|...|.......+..+|+-++|.+..+-. -..+.++.+ ...+++....||+|+..
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 66889999999999998888899999999999998742 011111111 11234556699999875
No 322
>KOG1547|consensus
Probab=97.79 E-value=1.1e-05 Score=66.82 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.3
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
|+..-..||.|+|++|.|||||++.|..
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~ 68 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFK 68 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHH
Confidence 4444557999999999999999999973
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=4.1e-05 Score=66.71 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=28.6
Q ss_pred ceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.|+|.+|.. -+-...+.-++.+|+++-||+|.+.
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 568999999952 3444455678999999999999853
No 324
>KOG1532|consensus
Probab=97.74 E-value=8.1e-05 Score=62.84 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+..|.|+|..||||||++.+|..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHH
Confidence 345688999999999999999973
No 325
>KOG2486|consensus
Probab=97.74 E-value=4.2e-05 Score=64.44 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..+.+++.|.+|.|||+|++.+...-........+.|-|..+..
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~------------------------------------ 178 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH------------------------------------ 178 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee------------------------------------
Confidence 34678999999999999999997421100000002222222211
Q ss_pred CCCcccccceEEEeeCCCh----------hHHHHHHHhcc---ccCCeEEEEEEcCCCcccccccccc----hhhHHHHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGH----------DILMATMLNGA---AVMDAALLLIGCDNAAKTPEIVDCP----GHDILMAT 158 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh----------~~f~~~~~~~~---~~aD~ailVVda~~g~~~~qt~e~l----~~~il~~~ 158 (182)
+..+.+++++|-||+ .++.+-....+ ...=-++++||+..+ +++-..+++ .|.+.+..
T Consensus 179 ----f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~-i~~~D~~~i~~~ge~~VP~t~ 253 (320)
T KOG2486|consen 179 ----FHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP-IQPTDNPEIAWLGENNVPMTS 253 (320)
T ss_pred ----eeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC-CCCCChHHHHHHhhcCCCeEE
Confidence 122378999999993 23333222222 222346788999988 777554433 25577778
Q ss_pred Hhccchhhh
Q psy1174 159 MLNGAAVMD 167 (182)
Q Consensus 159 ~~nk~d~~~ 167 (182)
++||+|.+.
T Consensus 254 vfTK~DK~k 262 (320)
T KOG2486|consen 254 VFTKCDKQK 262 (320)
T ss_pred eeehhhhhh
Confidence 899999764
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.74 E-value=4.9e-05 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++.++|.+++|||||+++|.+.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999863
No 327
>KOG0087|consensus
Probab=97.70 E-value=1.6e-05 Score=64.22 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=69.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|++||.++.|||-|+.++..-. +.. +...|+-..++...+ .. .
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnE---F~~--~SksTIGvef~t~t~-------------------------~v--d--- 59 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNE---FSL--ESKSTIGVEFATRTV-------------------------NV--D--- 59 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccc---cCc--ccccceeEEEEeece-------------------------ee--c---
Confidence 459999999999999999997421 111 122344443332111 00 0
Q ss_pred CcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchhh---HHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGHD---ILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~~---il~~~~~nk~d~~~ 167 (182)
...-+..|=||.|+++|..-....-+.|-+|+||-|..... +..+.+|...|+ +..+...||+|+..
T Consensus 60 ---~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 60 ---GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ---CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 01145678899999999964444448899999999997651 222223333344 44556699999875
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.68 E-value=7.3e-05 Score=66.68 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceEEEeeCCChh----HHHHHHHhc--cccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHD----ILMATMLNG--AAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~----~f~~~~~~~--~~~aD~ailVVda~~g 140 (182)
+.+.||||||.. ..+.++..- ...+|-++||+||..|
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 679999999964 344443332 2457889999999887
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00017 Score=63.26 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+++++|++|+||||++..|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999974
No 330
>KOG0093|consensus
Probab=97.60 E-value=0.00011 Score=56.61 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=69.0
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.+.|+|...+|||+|+-+-.+..-. .+.-.|+.+.+.-.++|+-+ .
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt-----~afvsTvGidFKvKTvyr~~-----------------------k------ 68 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFT-----SAFVSTVGIDFKVKTVYRSD-----------------------K------ 68 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccc-----cceeeeeeeeEEEeEeeecc-----------------------c------
Confidence 5899999999999998877642110 01112233333222332211 0
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccc---cccccchhhHHHHhHhccchhhhHHH
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTP---EIVDCPGHDILMATMLNGAAVMDAAL 170 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~---qt~e~l~~~il~~~~~nk~d~~~~~~ 170 (182)
--++-+-||.|.++|..-.....+.|++.||+.|....+ ++. |.+.+--..++....-||+|+.++..
T Consensus 69 ----RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv 143 (193)
T KOG0093|consen 69 ----RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV 143 (193)
T ss_pred ----EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee
Confidence 045788999999999876666679999999999998653 111 11111111233344589999887543
No 331
>KOG1486|consensus
Probab=97.59 E-value=6.5e-05 Score=62.79 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
-+|++||-+..|||||+..+.++-+. ......|.-.....+ ..+++
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se----aA~yeFTTLtcIpGv----------------------------i~y~g-- 108 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE----AASYEFTTLTCIPGV----------------------------IHYNG-- 108 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh----hhceeeeEEEeecce----------------------------EEecC--
Confidence 56999999999999999999864321 111111211111111 11223
Q ss_pred CcccccceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCCc
Q psy1174 98 GRFQLVRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNAA 141 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g~ 141 (182)
..+-++|-||.-. -..++++.++-||.+++|.||...+
T Consensus 109 ------a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 109 ------ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ------ceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 6789999999622 1224556678899999999999764
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.56 E-value=3.6e-05 Score=64.72 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
.+...++++|+.|+||||++..|.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 345678999999999999998886
No 333
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.55 E-value=0.00012 Score=56.49 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.4
Q ss_pred ceEEEeeCCChh---HHHHH-----HHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHD---ILMAT-----MLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~---~f~~~-----~~~~~~~aD~ailVVda~~g 140 (182)
..+.+|||||.. ..... ...+....|.++.|||+...
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~ 131 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHA 131 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHh
Confidence 457899999974 22222 33455778999999999865
No 334
>KOG2655|consensus
Probab=97.54 E-value=6e-05 Score=65.64 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.6
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
++.-..++.++|..|.|||||+|.|.+.
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhh
Confidence 3445578999999999999999999854
No 335
>KOG1424|consensus
Probab=97.46 E-value=0.00011 Score=66.41 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+..+|+.||.+|.||||++|+|.|.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~ 337 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGR 337 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcC
Confidence 3578999999999999999999974
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=4e-05 Score=66.33 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=26.1
Q ss_pred ceEEEeeCCChh----HHHHHHHhc--cccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHD----ILMATMLNG--AAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~----~f~~~~~~~--~~~aD~ailVVda~~g 140 (182)
+.+.+|||||.. .++.++..- ....|.++||+||..|
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 569999999974 344433221 2357999999999877
No 337
>KOG0086|consensus
Probab=97.38 E-value=0.00061 Score=52.96 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=56.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcC-CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV-QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~-~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+.++|+.|+|||-|+.+++.. ..|. ...|+...+..-.+. -.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDd------ssHTiGveFgSrIin---------------------------VG- 54 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDD------SSHTIGVEFGSRIVN---------------------------VG- 54 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccc------ccceeeeeecceeee---------------------------ec-
Confidence 356899999999999999999832 2221 222343333221110 00
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
...-++-+-||.|+++|..-.-+.-+.|-+|+||-|+..
T Consensus 55 -----gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts 93 (214)
T KOG0086|consen 55 -----GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 93 (214)
T ss_pred -----CcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc
Confidence 011567889999999999877777788889999999875
No 338
>KOG0079|consensus
Probab=97.34 E-value=0.00025 Score=54.86 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=33.2
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA 141 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~ 141 (182)
-++-+-||.|.+.|...+...-+..+++++|-|...|+
T Consensus 57 VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E 94 (198)
T KOG0079|consen 57 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE 94 (198)
T ss_pred EEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchh
Confidence 56788999999999987777778899999999999875
No 339
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.32 E-value=0.00049 Score=59.49 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.5
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+++|-+|+|||||+++++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~ 181 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSA 181 (369)
T ss_pred ccccccCCCCcHHHHHHHHhh
Confidence 589999999999999999984
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.31 E-value=2.1e-05 Score=63.02 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.9
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|+++|+.|+||||.+-.|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 468999999999999998886
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.31 E-value=0.00037 Score=62.38 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=27.0
Q ss_pred ceEEEeeCCChhHHHHHH------HhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATM------LNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~------~~~~~~aD~ailVVda~~g 140 (182)
+.+.+|||||.......+ +..+..+|.++||+||..|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 468999999965433222 2345678999999999887
No 342
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.29 E-value=0.00015 Score=56.50 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=25.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeee
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL 57 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~ 57 (182)
..++|+|..|||||||+..|+. .-+++|..+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~-------~L~~~G~rVa~ 35 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVR-------KLKARGYRVAT 35 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHH-------HHHhCCcEEEE
Confidence 3589999999999999999974 23356765554
No 343
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.27 E-value=0.0004 Score=45.76 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
...|.|+.+||||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999986
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.27 E-value=0.00078 Score=52.06 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=25.3
Q ss_pred ceEEEeeCCChhHH----HHHHHhcc--ccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDIL----MATMLNGA--AVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f----~~~~~~~~--~~aD~ailVVda~~g 140 (182)
+.+.+|||||...+ ...+.... ...|.+++|+|+..+
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~ 125 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG 125 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 56899999998533 33222211 348999999999765
No 345
>KOG2423|consensus
Probab=97.25 E-value=0.00018 Score=63.52 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.++.+.|++||.+|+|||+++|.|..
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhh
Confidence 56678899999999999999999974
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00035 Score=61.99 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..|+++|+.|+||||++..|.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999999996
No 347
>KOG2485|consensus
Probab=97.15 E-value=0.00051 Score=58.74 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCcc---chhhHhhhceeeeec
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTV---RFKNELERNITIKLG 58 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~---~~~~e~~~g~t~~~~ 58 (182)
...+|-|+|-+|.|||||+|++.-.... .-....+.|+|+..+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~ 187 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS 187 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh
Confidence 4568999999999999999999622111 112234466666553
No 348
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00025 Score=61.76 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.9
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|++|+|||||+++|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999864
No 349
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.13 E-value=0.00035 Score=55.93 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.1
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++...|+|+|++|||||||+++|.+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999974
No 350
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00034 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.6
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-|+++||+|+|||||++.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
No 351
>KOG4181|consensus
Probab=97.11 E-value=0.00084 Score=58.42 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCCcc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTV 43 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~ 43 (182)
.+|+++|.-|+|||||+..|.+...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans~~ 214 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANSLD 214 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccChH
Confidence 46899999999999999999876543
No 352
>KOG0088|consensus
Probab=97.08 E-value=0.00022 Score=55.67 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccc---cccchhhHHHHhHhccchhhhHHHH
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEI---VDCPGHDILMATMLNGAAVMDAALL 171 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt---~e~l~~~il~~~~~nk~d~~~~~~~ 171 (182)
-.+++-||.|.++|..----.-+.+|+|+||.|..+.. +.... +.+++.-+-+....||+|+..+..+
T Consensus 62 a~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV 136 (218)
T ss_pred eeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh
Confidence 45888999999999863222338899999999998742 11111 2222222333345899998865443
No 353
>KOG0071|consensus
Probab=97.05 E-value=0.00068 Score=52.02 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=44.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----hhh----HHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----GHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~~~----il~~~~~nk~d~~~ 167 (182)
-.+|+-|..|..+...-.-.....+-++|+|+|+.+-......++-| +|. .+...+.||+|+.+
T Consensus 61 ~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 61 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred eEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 67899999999998887777788889999999998642222333222 111 11225679999875
No 354
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00043 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.2
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.-.|+|||++|||||||+.+|.+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999974
No 355
>KOG1491|consensus
Probab=97.02 E-value=0.0015 Score=56.51 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=27.9
Q ss_pred ceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
-.++++|..|.. -+-...++-++.+|+++=||+|.+.
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 468999999952 2444455678899999999999753
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=97.00 E-value=0.00049 Score=61.55 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
.++..|.++|+.|+||||++..|.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 345678999999999999887775
No 357
>KOG1707|consensus
Probab=97.00 E-value=0.00081 Score=61.57 Aligned_cols=112 Identities=14% Similarity=-0.007 Sum_probs=66.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|.-|+|||+|+=+|+...-......+-.-+++....
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadv------------------------------------ 51 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADV------------------------------------ 51 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCcc------------------------------------
Confidence 45789999999999999999998543110000000111111100
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccc-cccc-----cch---hhHHHHhHhccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTP-EIVD-----CPG---HDILMATMLNGAAV 165 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~-qt~e-----~l~---~~il~~~~~nk~d~ 165 (182)
..+.-...++||+-..+-...+...++.||++.+|-++++.. +.. ++.. -+. |-++.....||.|.
T Consensus 52 ----tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 52 ----TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDN 127 (625)
T ss_pred ----CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCC
Confidence 011134789999877666666778899999999999887641 000 1111 011 34455556899986
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 128 ~~ 129 (625)
T KOG1707|consen 128 GD 129 (625)
T ss_pred cc
Confidence 64
No 358
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.99 E-value=0.00054 Score=56.24 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.2
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
-|+|+|++|||||||++.|.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999974
No 359
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.98 E-value=0.00065 Score=53.58 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+.+..+.++|+|..|||||||+.+|++
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHH
Confidence 344556789999999999999999985
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.95 E-value=0.00027 Score=63.11 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
++..+.++|+.|+||||++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999987775
No 361
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0036 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+|+|.|.+|+|||||++.|..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHH
Confidence 34799999999999999999973
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00075 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3458999999999999999999764
No 363
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.86 E-value=0.00077 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.9
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+|.|++||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999963
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.00048 Score=61.37 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++++|++|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
No 365
>KOG2484|consensus
Probab=96.84 E-value=0.00093 Score=58.80 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..++|+|||-+|.||||++|+|.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~ 273 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLK 273 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHH
Confidence 355789999999999999999997
No 366
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.82 E-value=0.00058 Score=54.68 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=24.3
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.....+++|+++|+.|+|||||+++|+.
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4455678999999999999999999974
No 367
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0029 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...++++|+.|+||||++..|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999886
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.77 E-value=0.0013 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....|+|.|++|||||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 369
>KOG0083|consensus
Probab=96.73 E-value=0.0006 Score=51.91 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=51.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-------ccccccccchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-------KTPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-------~~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
-++-+-||.|+++|..-....-+.||+.+|+-|...-. ...+..|+-.|++.+..+.||+|...
T Consensus 47 vklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 47 VKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred EEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 56788999999999998888889999999999986532 23355667778888899999999743
No 370
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0014 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++++|+.|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999754
No 371
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.70 E-value=0.0013 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999999754
No 372
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.69 E-value=0.0014 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999754
No 373
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.69 E-value=0.0013 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3458999999999999999999764
No 374
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.68 E-value=0.0012 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.|+|+|++|+|||||+|.+.|-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 35899999999999999999753
No 375
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0013 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 376
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.68 E-value=0.0013 Score=57.48 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.6
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.|+|+|.+|+|||||+..|+.
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~ 227 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIP 227 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 377
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.65 E-value=0.0014 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 378
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0017 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=22.0
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
|.-.+....++|||+|+|||||+.+|-.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 3333445679999999999999999963
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.64 E-value=0.0014 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=20.9
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+||.|||||||+++|.|..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357999999999999999998643
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0014 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34468999999999999999999854
No 381
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.63 E-value=0.0015 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||++.|.|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.63 E-value=0.0015 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999999764
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.63 E-value=0.0016 Score=51.24 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
...+++++|++|||||||+++|++..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34679999999999999999998754
No 384
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0016 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999854
No 385
>PRK08233 hypothetical protein; Provisional
Probab=96.62 E-value=0.0018 Score=49.90 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=21.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...|+|.|.+|||||||+..|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999753
No 386
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.61 E-value=0.0016 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 387
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0017 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999854
No 388
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0016 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-|+|||++|||||||+.+|.+.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4899999999999999999864
No 389
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.59 E-value=0.0017 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999764
No 390
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.58 E-value=0.002 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 391
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.58 E-value=0.0016 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||+++|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3458999999999999999998754
No 392
>KOG1490|consensus
Probab=96.58 E-value=0.0014 Score=59.25 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+++.++|-+|.|||++++.++.
T Consensus 168 trTlllcG~PNVGKSSf~~~vtr 190 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTR 190 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccc
Confidence 46789999999999999988863
No 393
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.57 E-value=0.002 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999999764
No 394
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0018 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458999999999999999999864
No 395
>PRK07261 topology modulation protein; Provisional
Probab=96.56 E-value=0.0018 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.1
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
+|+|+|.+|||||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 396
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0019 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999864
No 397
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.55 E-value=0.0019 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999754
No 398
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0019 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|||||||++.|.|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998764
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0019 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|+|||||++.|.|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999764
No 400
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.54 E-value=0.0019 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999764
No 401
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.54 E-value=0.0018 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3458999999999999999999764
No 402
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.54 E-value=0.0022 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999754
No 403
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.53 E-value=0.002 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458999999999999999999864
No 404
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.53 E-value=0.0022 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 405
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.53 E-value=0.0023 Score=42.47 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.8
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|++.|++++||||+.++|..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
No 406
>KOG4252|consensus
Probab=96.53 E-value=0.00064 Score=54.16 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=67.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
-+.++|+|.-+.||||++.+..+..-.+ ..+-|+-..+..-.+ .
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTk-----dykktIgvdflerqi-------------------------~------ 63 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTK-----DYKKTIGVDFLERQI-------------------------K------ 63 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccc-----ccccccchhhhhHHH-------------------------H------
Confidence 3568999999999999999998433110 011122222210000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-----------ccccccccchhhHHHHhHhccchh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-----------KTPEIVDCPGHDILMATMLNGAAV 165 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-----------~~~qt~e~l~~~il~~~~~nk~d~ 165 (182)
...+..++-+-||.|.+.|..-.-..-+.|.+.+||.+..+-. ++..+.+ |+.++.-||||+
T Consensus 64 --v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-----IPtV~vqNKIDl 136 (246)
T KOG4252|consen 64 --VLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-----IPTVFVQNKIDL 136 (246)
T ss_pred --hhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-----CCeEEeeccchh
Confidence 0011144566799999998875455557788889999988632 2223322 566677899998
Q ss_pred hhHHH
Q psy1174 166 MDAAL 170 (182)
Q Consensus 166 ~~~~~ 170 (182)
++...
T Consensus 137 veds~ 141 (246)
T KOG4252|consen 137 VEDSQ 141 (246)
T ss_pred hHhhh
Confidence 75443
No 407
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.52 E-value=0.0019 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3458999999999999999998754
No 408
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.52 E-value=0.002 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 409
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.52 E-value=0.0019 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999999999865
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.51 E-value=0.0024 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.-.++++|+.|+|||||++++++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3445689999999999999999863
No 411
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.51 E-value=0.0021 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458999999999999999999764
No 412
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0021 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999764
No 413
>PRK08118 topology modulation protein; Reviewed
Probab=96.50 E-value=0.0021 Score=49.98 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.8
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|.|+|++|||||||...|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 414
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0021 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.49 E-value=0.0022 Score=48.58 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3458999999999999999999864
No 416
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.49 E-value=0.0021 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.-.++|+|+.|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999986
No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.49 E-value=0.0023 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 418
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.49 E-value=0.002 Score=48.84 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.5
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+|+|+.|+|||||+..|+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 419
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.48 E-value=0.0022 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999764
No 420
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.48 E-value=0.0021 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|||||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 421
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0022 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3458999999999999999998754
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0022 Score=50.69 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.3
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
+|.|+|++||||||+...|..
T Consensus 2 riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999973
No 423
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0022 Score=52.22 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458999999999999999999764
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.012 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.7
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+++++|+.|+||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999888763
No 425
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.47 E-value=0.0023 Score=52.05 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999754
No 426
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0022 Score=51.66 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||+++|.|..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 458999999999999999999764
No 427
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0022 Score=53.51 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.9
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-++|+||.|+|||||+.+++|..
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 428
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.46 E-value=0.0022 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQT 42 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~ 42 (182)
.-.++|+|+.|+|||||++.|.|...
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44589999999999999999998653
No 429
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.46 E-value=0.0023 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999864
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.0019 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|+.|+||||++..|.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 336799999999999999998864
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.0082 Score=57.17 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+++|+.|+||||++..|.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 35689999999999999999975
No 432
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0023 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 433
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0023 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++|+|+.|+|||||++.|.|.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999975
No 434
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0025 Score=49.44 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999854
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.44 E-value=0.0025 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999754
No 436
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.44 E-value=0.0025 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998764
No 437
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.43 E-value=0.0029 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999864
No 438
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.0024 Score=52.93 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
=.|++||+.|||||||++.|.|..
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 358999999999999999998764
No 439
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.43 E-value=0.0029 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999864
No 440
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.42 E-value=0.0025 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 33458999999999999999999754
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.42 E-value=0.0025 Score=50.36 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.6
Q ss_pred eEEECCCCCChHHHHhHHhc
Q psy1174 20 PGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g 39 (182)
|+|+|++|||||||+++|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999974
No 442
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0024 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34468999999999999999999854
No 443
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.42 E-value=0.0024 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 444
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.42 E-value=0.0031 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.9
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++.++|++|+||||++..|....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 568999999999999999998543
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.41 E-value=0.0026 Score=46.35 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.0
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...++++|++|+|||||+.+|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 33568999999999999999986
No 446
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.41 E-value=0.0025 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 447
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.41 E-value=0.0031 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44568999999999999999999764
No 448
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0026 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998754
No 449
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.39 E-value=0.0025 Score=47.17 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.3
Q ss_pred eEEECCCCCChHHHHhHHhc
Q psy1174 20 PGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g 39 (182)
|.++|++|||||||+..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
No 450
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.39 E-value=0.0026 Score=50.58 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3458999999999999999998754
No 451
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.39 E-value=0.0027 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34468999999999999999999754
No 452
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0027 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999754
No 453
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.38 E-value=0.0027 Score=51.56 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 454
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0025 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccC
Confidence 3468999999999999999999864
No 455
>PRK10908 cell division protein FtsE; Provisional
Probab=96.38 E-value=0.0032 Score=50.61 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 456
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.38 E-value=0.0034 Score=48.56 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999864
No 457
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0027 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++|+|+.|+|||||++.|.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35899999999999999999875
No 458
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.37 E-value=0.0027 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999999764
No 459
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0027 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999764
No 460
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.0028 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 461
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.36 E-value=0.0028 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34468999999999999999999764
No 462
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0032 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=22.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+.-.++++|+.|+|||||++.|.|.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999985
No 463
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.36 E-value=0.0032 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=21.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+...|+++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899999999999999999864
No 464
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.35 E-value=0.0046 Score=49.95 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.1
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
-.++++|+.|||||||+++|.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999987
No 465
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.35 E-value=0.0028 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||+++|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 458999999999999999999753
No 466
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.35 E-value=0.0029 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999764
No 467
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.35 E-value=0.0028 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|||||||++.|.|..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999998753
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.35 E-value=0.003 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34468999999999999999999764
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.0027 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-++++||+|||||||++.|.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998654
No 470
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0027 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999999998753
No 471
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.34 E-value=0.0029 Score=50.29 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|+|||||++.|.|..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999764
No 472
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.34 E-value=0.002 Score=49.91 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=39.5
Q ss_pred CCCh-hHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh--HHHHhHhccchhhhH
Q psy1174 111 CPGH-DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD--ILMATMLNGAAVMDA 168 (182)
Q Consensus 111 tPGh-~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~--il~~~~~nk~d~~~~ 168 (182)
-||| .+.+.++...+..||.+++|+|+.++ ......+++... .....++||+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~-~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIP-LSSRNPLLEKILGNKPRIIVLNKADLADP 61 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCc-cCcCChhhHhHhcCCCEEEEEehhhcCCh
Confidence 4888 46788889999999999999999876 433333322111 223466999998643
No 473
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0029 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34458999999999999999998764
No 474
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0029 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999999864
No 475
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0029 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||+++|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34468999999999999999999753
No 476
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0035 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 477
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.0029 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999999864
No 478
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0034 Score=51.52 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
++.-.++|+|+.|+|||||+++|+|..
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 344468999999999999999999764
No 479
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.33 E-value=0.0035 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3458999999999999999999754
No 480
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0029 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998764
No 481
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.33 E-value=0.0029 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||+++|.|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 44568999999999999999999764
No 482
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.0029 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||+++|.|..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3458999999999999999999754
No 483
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.0035 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 484
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0029 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||+++|.|..
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998764
No 485
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.32 E-value=0.003 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999764
No 486
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.31 E-value=0.012 Score=41.43 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.6
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
+.+.+||+|+...-. ....+..+|.+++++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 458999999975433 33677889999999988753
No 487
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.31 E-value=0.0031 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999764
No 488
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.31 E-value=0.0022 Score=63.74 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.1
Q ss_pred eEEECCCCCChHHHHhHH
Q psy1174 20 PGTIGHVAHGKSTVVKAI 37 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L 37 (182)
..|||++|+||||++..-
T Consensus 114 YlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCchhHHHHhC
Confidence 589999999999998865
No 489
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.003 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||+++|.|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 33458999999999999999998754
No 490
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.003 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++|+|+.|+|||||++.|.|.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999874
No 491
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.30 E-value=0.0031 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|+|||||++.|.|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3458999999999999999999764
No 492
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0031 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999854
No 493
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0031 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 358999999999999999999864
No 494
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0031 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||++.|.|..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999764
No 495
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0031 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.-.++|+|+.|+|||||++.|.|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 345899999999999999999974
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.29 E-value=0.003 Score=51.37 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.4
Q ss_pred eEEECCCCCChHHHHhHHhc
Q psy1174 20 PGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g 39 (182)
|+|.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 79999999999999999874
No 497
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.29 E-value=0.0033 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999764
No 498
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.29 E-value=0.0033 Score=50.58 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 499
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.003 Score=52.34 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||+++|.|..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999999764
No 500
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.29 E-value=0.0051 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++|+|+.|||||||+++|.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999973
Done!