Query psy1174
Match_columns 182
No_of_seqs 129 out of 1035
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:43:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j25_A Tetracycline resistance 99.9 1.9E-26 6.4E-31 211.4 2.7 114 16-167 1-133 (638)
2 3vqt_A RF-3, peptide chain rel 99.9 2.6E-26 8.7E-31 207.3 1.5 114 16-167 30-166 (548)
3 4fn5_A EF-G 1, elongation fact 99.9 2.1E-25 7.3E-30 206.4 2.8 121 16-167 12-151 (709)
4 1kk1_A EIF2gamma; initiation o 99.8 1.8E-21 6.1E-26 169.3 9.4 141 13-168 6-152 (410)
5 3j2k_7 ERF3, eukaryotic polype 99.8 1.8E-21 6.2E-26 171.2 8.2 117 12-166 12-168 (439)
6 1s0u_A EIF-2-gamma, translatio 99.8 3.9E-21 1.3E-25 167.1 9.4 142 12-167 3-149 (408)
7 1wb1_A Translation elongation 99.8 1.5E-21 5.2E-26 173.6 5.7 123 8-168 10-140 (482)
8 1d2e_A Elongation factor TU (E 99.8 2.8E-20 9.5E-25 161.4 4.8 114 16-167 2-133 (397)
9 2c78_A Elongation factor TU-A; 99.8 1.6E-20 5.6E-25 163.0 2.7 117 12-166 6-141 (405)
10 1r5b_A Eukaryotic peptide chai 99.8 1.7E-20 5.7E-25 166.2 2.8 116 13-166 39-194 (467)
11 1f60_A Elongation factor EEF1A 99.8 6.5E-20 2.2E-24 162.0 4.1 115 14-166 4-158 (458)
12 1zun_B Sulfate adenylate trans 99.8 1.9E-19 6.4E-24 157.8 5.9 115 15-167 22-171 (434)
13 1jny_A EF-1-alpha, elongation 99.8 1.7E-19 5.7E-24 158.2 5.4 119 12-167 1-158 (435)
14 2ywe_A GTP-binding protein LEP 99.8 1.4E-19 4.7E-24 164.9 3.6 119 16-167 5-139 (600)
15 3cb4_D GTP-binding protein LEP 99.8 2E-19 6.9E-24 163.8 3.2 119 16-167 3-137 (599)
16 2elf_A Protein translation elo 99.7 7E-19 2.4E-23 151.8 4.5 99 19-168 23-127 (370)
17 3mca_A HBS1, elongation factor 99.7 8.2E-20 2.8E-24 166.2 -1.6 117 14-167 174-329 (592)
18 3avx_A Elongation factor TS, e 99.7 1.5E-18 5E-23 166.8 5.4 116 14-167 293-426 (1289)
19 3p26_A Elongation factor 1 alp 99.7 2.6E-18 8.8E-23 152.5 6.6 117 14-167 30-185 (483)
20 3sjy_A Translation initiation 99.7 2.7E-17 9.2E-22 142.7 12.4 137 13-169 4-145 (403)
21 2rdo_7 EF-G, elongation factor 99.7 2.7E-18 9.3E-23 158.9 6.0 122 15-167 8-148 (704)
22 3tr5_A RF-3, peptide chain rel 99.7 1.1E-18 3.6E-23 157.0 3.1 114 16-167 12-148 (528)
23 3izq_1 HBS1P, elongation facto 99.7 5E-18 1.7E-22 154.9 6.5 117 14-167 164-319 (611)
24 2h5e_A Peptide chain release f 99.7 1.7E-18 5.7E-23 155.7 3.2 115 15-167 11-148 (529)
25 1zo1_I IF2, translation initia 99.7 4.7E-19 1.6E-23 158.4 -1.0 111 16-167 3-117 (501)
26 1n0u_A EF-2, elongation factor 99.7 3.9E-18 1.3E-22 160.6 0.8 130 15-166 17-163 (842)
27 1dar_A EF-G, elongation factor 99.7 2.7E-17 9.2E-22 151.9 3.4 115 15-167 10-143 (691)
28 3izy_P Translation initiation 99.6 5.3E-18 1.8E-22 152.7 -2.8 111 17-167 4-118 (537)
29 1g7s_A Translation initiation 99.6 1.1E-17 3.6E-22 152.4 -0.9 129 16-167 4-136 (594)
30 2xex_A Elongation factor G; GT 99.6 2.7E-17 9.4E-22 151.9 1.7 115 15-167 8-141 (693)
31 2dy1_A Elongation factor G; tr 99.6 2E-15 6.9E-20 138.9 5.8 114 15-166 7-139 (665)
32 1wf3_A GTP-binding protein; GT 99.5 1.9E-14 6.5E-19 120.7 4.1 111 17-167 7-131 (301)
33 2lkc_A Translation initiation 99.4 5.4E-15 1.8E-19 111.8 -0.7 111 16-167 7-121 (178)
34 3iev_A GTP-binding protein ERA 99.4 3.9E-14 1.3E-18 118.8 4.1 111 16-166 9-135 (308)
35 4dhe_A Probable GTP-binding pr 99.4 4.9E-14 1.7E-18 110.8 2.4 116 14-167 26-158 (223)
36 1ega_A Protein (GTP-binding pr 99.4 6.9E-14 2.3E-18 117.0 2.4 109 17-167 8-130 (301)
37 2erx_A GTP-binding protein DI- 99.4 2.1E-13 7.3E-18 101.8 4.9 112 17-167 3-123 (172)
38 3lxx_A GTPase IMAP family memb 99.4 4.3E-13 1.5E-17 107.6 6.9 114 14-167 26-159 (239)
39 1kao_A RAP2A; GTP-binding prot 99.4 1.2E-13 4E-18 102.6 2.9 113 16-167 2-122 (167)
40 2hjg_A GTP-binding protein ENG 99.4 1.1E-13 3.8E-18 121.1 3.0 112 16-167 174-300 (436)
41 2p5s_A RAS and EF-hand domain 99.4 2.6E-13 8.9E-18 105.3 4.4 117 12-167 23-147 (199)
42 2xtp_A GTPase IMAP family memb 99.4 5.9E-13 2E-17 107.9 6.5 113 15-167 20-153 (260)
43 1svi_A GTP-binding protein YSX 99.4 3.5E-13 1.2E-17 103.5 4.7 114 12-167 18-148 (195)
44 3clv_A RAB5 protein, putative; 99.4 1.8E-13 6.2E-18 104.6 3.1 37 104-140 93-129 (208)
45 1u8z_A RAS-related protein RAL 99.4 2.1E-13 7.1E-18 101.3 3.3 114 15-167 2-123 (168)
46 4bas_A ADP-ribosylation factor 99.4 9.8E-14 3.3E-18 106.8 1.5 86 14-140 14-99 (199)
47 2y8e_A RAB-protein 6, GH09086P 99.4 9.9E-14 3.4E-18 104.5 1.5 115 15-167 12-133 (179)
48 4dcu_A GTP-binding protein ENG 99.4 1.7E-13 5.7E-18 120.6 3.1 114 14-167 20-145 (456)
49 2dyk_A GTP-binding protein; GT 99.4 5E-13 1.7E-17 99.1 5.1 111 18-168 2-123 (161)
50 1z0f_A RAB14, member RAS oncog 99.4 3.5E-13 1.2E-17 101.5 4.2 113 16-167 14-134 (179)
51 3qq5_A Small GTP-binding prote 99.4 6.8E-14 2.3E-18 122.7 0.2 112 15-167 32-154 (423)
52 1upt_A ARL1, ADP-ribosylation 99.4 3.3E-13 1.1E-17 101.0 3.9 109 16-167 6-122 (171)
53 3tw8_B RAS-related protein RAB 99.4 1.1E-13 3.7E-18 104.4 1.1 87 16-140 8-94 (181)
54 1ek0_A Protein (GTP-binding pr 99.4 2.1E-13 7.1E-18 101.7 2.6 86 17-140 3-88 (170)
55 1zd9_A ADP-ribosylation factor 99.3 1.8E-13 6.1E-18 105.3 2.1 112 14-167 19-138 (188)
56 3pqc_A Probable GTP-binding pr 99.3 4.1E-13 1.4E-17 102.6 4.1 111 14-167 20-147 (195)
57 3i8s_A Ferrous iron transport 99.3 9.7E-14 3.3E-18 114.5 0.5 112 16-167 2-126 (274)
58 2hjg_A GTP-binding protein ENG 99.3 2.3E-13 8E-18 119.0 2.7 110 18-167 4-125 (436)
59 1ksh_A ARF-like protein 2; sma 99.3 4.1E-13 1.4E-17 102.5 3.7 110 15-167 16-133 (186)
60 3k53_A Ferrous iron transport 99.3 1.5E-13 5.3E-18 112.6 1.3 112 16-167 2-123 (271)
61 2efe_B Small GTP-binding prote 99.3 1.4E-13 4.7E-18 104.2 0.8 115 15-167 10-131 (181)
62 1r8s_A ADP-ribosylation factor 99.3 4.2E-13 1.4E-17 100.0 3.4 64 104-167 44-115 (164)
63 1r2q_A RAS-related protein RAB 99.3 1.3E-13 4.4E-18 102.8 0.6 87 16-140 5-91 (170)
64 2hxs_A RAB-26, RAS-related pro 99.3 3.1E-13 1E-17 102.0 2.6 89 15-140 4-92 (178)
65 3lxw_A GTPase IMAP family memb 99.3 8.9E-13 3.1E-17 107.1 5.4 114 14-167 18-153 (247)
66 2bme_A RAB4A, RAS-related prot 99.3 3.5E-13 1.2E-17 102.6 2.5 113 16-167 9-129 (186)
67 1z08_A RAS-related protein RAB 99.3 1.9E-13 6.6E-18 102.2 1.1 114 16-167 5-125 (170)
68 1z06_A RAS-related protein RAB 99.3 2.7E-13 9.2E-18 104.1 1.8 116 14-167 17-141 (189)
69 2h17_A ADP-ribosylation factor 99.3 3.3E-13 1.1E-17 103.1 2.2 111 14-167 18-136 (181)
70 1ky3_A GTP-binding protein YPT 99.3 2.4E-13 8.3E-18 102.6 1.4 89 15-140 6-94 (182)
71 2g6b_A RAS-related protein RAB 99.3 1.7E-13 5.9E-18 103.6 0.5 115 15-167 8-130 (180)
72 3bc1_A RAS-related protein RAB 99.3 4.4E-13 1.5E-17 102.0 2.8 123 16-167 10-141 (195)
73 2il1_A RAB12; G-protein, GDP, 99.3 1.5E-12 5.1E-17 100.6 5.7 113 16-167 25-145 (192)
74 1wms_A RAB-9, RAB9, RAS-relate 99.3 7.7E-13 2.6E-17 99.7 3.9 88 15-140 5-92 (177)
75 2gf0_A GTP-binding protein DI- 99.3 1.1E-12 3.7E-17 100.9 4.8 87 15-140 6-92 (199)
76 2a9k_A RAS-related protein RAL 99.3 5.1E-13 1.7E-17 101.2 2.9 115 14-167 15-137 (187)
77 1c1y_A RAS-related protein RAP 99.3 2.8E-13 9.4E-18 100.9 1.3 113 16-167 2-122 (167)
78 2f7s_A C25KG, RAS-related prot 99.3 8E-13 2.7E-17 103.6 3.9 124 15-167 23-155 (217)
79 2hup_A RAS-related protein RAB 99.3 4.6E-13 1.6E-17 104.5 2.4 114 16-167 28-148 (201)
80 2ew1_A RAS-related protein RAB 99.3 5E-13 1.7E-17 104.9 2.4 87 16-140 25-111 (201)
81 1mky_A Probable GTP-binding pr 99.3 1.3E-12 4.4E-17 114.4 5.3 110 18-167 2-124 (439)
82 2oil_A CATX-8, RAS-related pro 99.3 2E-13 6.8E-18 105.0 0.1 115 15-167 23-144 (193)
83 3tkl_A RAS-related protein RAB 99.3 2E-13 6.7E-18 104.8 -0.1 114 16-167 15-135 (196)
84 2o52_A RAS-related protein RAB 99.3 2.2E-13 7.5E-18 106.1 0.0 115 15-167 23-144 (200)
85 3t5g_A GTP-binding protein RHE 99.3 1.7E-13 5.8E-18 104.1 -0.6 113 14-166 3-124 (181)
86 2h57_A ADP-ribosylation factor 99.3 1.9E-13 6.7E-18 105.0 -0.3 86 14-140 18-103 (190)
87 3t1o_A Gliding protein MGLA; G 99.3 8.1E-13 2.8E-17 100.9 3.0 120 15-167 12-149 (198)
88 1vg8_A RAS-related protein RAB 99.3 2E-13 6.8E-18 105.8 -0.5 88 15-140 6-93 (207)
89 1zj6_A ADP-ribosylation factor 99.3 4.7E-13 1.6E-17 102.6 1.6 111 14-167 13-131 (187)
90 2a5j_A RAS-related protein RAB 99.3 4.4E-13 1.5E-17 103.2 1.4 115 15-167 19-140 (191)
91 4gzl_A RAS-related C3 botulinu 99.3 1E-12 3.4E-17 102.8 3.5 114 14-167 27-148 (204)
92 2bov_A RAla, RAS-related prote 99.3 7.4E-13 2.5E-17 102.3 2.6 115 14-167 11-133 (206)
93 3iby_A Ferrous iron transport 99.3 4.1E-13 1.4E-17 110.0 1.1 111 18-168 2-125 (256)
94 4dcu_A GTP-binding protein ENG 99.3 4.6E-13 1.6E-17 117.8 1.3 113 15-167 193-320 (456)
95 2ce2_X GTPase HRAS; signaling 99.3 8.1E-13 2.8E-17 97.7 2.5 85 17-140 3-87 (166)
96 2b6h_A ADP-ribosylation factor 99.3 5.3E-13 1.8E-17 103.4 1.5 111 14-167 26-144 (192)
97 1nrj_B SR-beta, signal recogni 99.3 7.9E-13 2.7E-17 103.7 2.4 80 15-138 10-93 (218)
98 2fu5_C RAS-related protein RAB 99.3 4.3E-13 1.5E-17 102.0 0.5 114 16-167 7-127 (183)
99 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.8E-12 6.1E-17 98.3 3.8 113 16-167 4-123 (186)
100 3oes_A GTPase rhebl1; small GT 99.3 1.9E-13 6.3E-18 106.3 -1.9 117 12-167 19-143 (201)
101 2x77_A ADP-ribosylation factor 99.3 2.1E-13 7.1E-18 104.6 -1.7 110 15-167 20-137 (189)
102 1g16_A RAS-related protein SEC 99.3 2.1E-13 7.2E-18 101.8 -1.7 86 17-140 3-88 (170)
103 3reg_A RHO-like small GTPase; 99.3 7.2E-13 2.5E-17 102.1 1.3 90 12-140 18-107 (194)
104 1fzq_A ADP-ribosylation factor 99.3 5.8E-12 2E-16 96.5 6.3 110 15-167 14-131 (181)
105 1f6b_A SAR1; gtpases, N-termin 99.3 6.4E-13 2.2E-17 103.6 0.8 109 15-166 23-139 (198)
106 3kkq_A RAS-related protein M-R 99.3 3.1E-12 1.1E-16 97.2 4.5 87 15-140 16-102 (183)
107 1z0j_A RAB-22, RAS-related pro 99.3 3.1E-12 1.1E-16 95.4 4.4 87 16-140 5-91 (170)
108 3def_A T7I23.11 protein; chlor 99.3 6.4E-13 2.2E-17 108.5 0.7 26 15-40 34-59 (262)
109 2fn4_A P23, RAS-related protei 99.3 3E-12 1E-16 96.5 4.3 113 16-167 8-128 (181)
110 1z2a_A RAS-related protein RAB 99.3 1.2E-12 4.1E-17 97.5 2.0 114 16-167 4-123 (168)
111 1zbd_A Rabphilin-3A; G protein 99.3 3.1E-12 1.1E-16 99.1 4.2 113 17-167 8-127 (203)
112 2qpt_A EH domain-containing pr 99.3 1.9E-12 6.7E-17 116.7 3.6 65 104-168 154-233 (550)
113 2fg5_A RAB-22B, RAS-related pr 99.3 1.1E-12 3.7E-17 101.2 1.6 114 16-167 22-142 (192)
114 3q72_A GTP-binding protein RAD 99.2 1.2E-12 4E-17 97.7 1.7 84 17-140 2-85 (166)
115 3a1s_A Iron(II) transport prot 99.2 7.6E-13 2.6E-17 108.4 0.7 113 16-168 4-125 (258)
116 4dsu_A GTPase KRAS, isoform 2B 99.2 1.7E-12 5.8E-17 98.6 2.6 86 16-140 3-88 (189)
117 3dz8_A RAS-related protein RAB 99.2 9.1E-13 3.1E-17 101.4 1.1 88 15-140 21-108 (191)
118 1moz_A ARL1, ADP-ribosylation 99.2 5.2E-13 1.8E-17 101.3 -0.3 110 15-167 16-133 (183)
119 3gee_A MNME, tRNA modification 99.2 1.7E-12 5.8E-17 115.3 2.9 111 17-167 233-357 (476)
120 2gf9_A RAS-related protein RAB 99.2 8.8E-13 3E-17 101.2 0.9 113 17-167 22-141 (189)
121 3cph_A RAS-related protein SEC 99.2 4.2E-13 1.4E-17 104.4 -1.0 88 15-140 18-105 (213)
122 1m2o_B GTP-binding protein SAR 99.2 1.3E-12 4.4E-17 101.1 1.7 110 15-167 21-138 (190)
123 3l0i_B RAS-related protein RAB 99.2 8.2E-14 2.8E-18 108.2 -5.3 87 16-140 32-118 (199)
124 2bcg_Y Protein YP2, GTP-bindin 99.2 4.4E-13 1.5E-17 104.3 -1.3 113 16-167 7-127 (206)
125 2yc2_C IFT27, small RAB-relate 99.2 1.7E-12 5.8E-17 100.2 2.0 119 15-167 18-146 (208)
126 4djt_A GTP-binding nuclear pro 99.2 5.5E-13 1.9E-17 104.6 -0.8 117 14-168 8-132 (218)
127 2fv8_A H6, RHO-related GTP-bin 99.2 2.1E-12 7.1E-17 100.9 2.3 115 14-167 22-143 (207)
128 2j0v_A RAC-like GTP-binding pr 99.2 1.5E-12 5.3E-17 101.6 1.6 117 12-167 4-127 (212)
129 2ged_A SR-beta, signal recogni 99.2 5.1E-13 1.8E-17 102.5 -1.3 80 15-138 46-129 (193)
130 2gj8_A MNME, tRNA modification 99.2 9.7E-12 3.3E-16 94.8 5.7 112 16-167 3-129 (172)
131 1h65_A Chloroplast outer envel 99.2 2.9E-12 1E-16 104.9 2.8 25 16-40 38-62 (270)
132 3cpj_B GTP-binding protein YPT 99.2 8E-13 2.7E-17 104.6 -1.0 114 15-167 11-132 (223)
133 1jwy_B Dynamin A GTPase domain 99.2 1.1E-11 3.8E-16 102.8 5.8 63 104-167 131-212 (315)
134 3th5_A RAS-related C3 botulinu 98.8 1.3E-12 4.5E-17 101.5 0.0 115 14-167 27-148 (204)
135 2nzj_A GTP-binding protein REM 99.2 3.5E-12 1.2E-16 95.7 2.3 113 16-167 3-125 (175)
136 2j1l_A RHO-related GTP-binding 99.2 3.7E-12 1.2E-16 100.3 2.3 113 16-167 33-152 (214)
137 3llu_A RAS-related GTP-binding 99.2 7.9E-12 2.7E-16 96.8 4.0 91 12-140 15-108 (196)
138 3q85_A GTP-binding protein REM 99.2 4.3E-12 1.5E-16 94.9 2.3 112 18-167 3-123 (169)
139 2atv_A RERG, RAS-like estrogen 99.2 8.3E-12 2.9E-16 96.4 3.9 116 12-167 23-146 (196)
140 3geh_A MNME, tRNA modification 99.2 1.8E-12 6E-17 114.8 -0.0 112 17-168 224-345 (462)
141 2atx_A Small GTP binding prote 99.2 2E-12 6.9E-17 99.4 0.1 113 16-167 17-136 (194)
142 3o47_A ADP-ribosylation factor 99.2 2.2E-12 7.5E-17 109.1 0.3 110 15-167 163-280 (329)
143 2wji_A Ferrous iron transport 99.2 3.5E-12 1.2E-16 96.2 1.4 111 17-167 3-122 (165)
144 3bwd_D RAC-like GTP-binding pr 99.2 2.3E-11 8E-16 91.9 5.5 117 12-167 3-126 (182)
145 2wjg_A FEOB, ferrous iron tran 99.2 3.9E-12 1.3E-16 97.0 1.1 113 16-168 6-127 (188)
146 3t5d_A Septin-7; GTP-binding p 99.2 2.4E-11 8.3E-16 99.7 5.7 27 15-41 6-32 (274)
147 3r7w_A Gtpase1, GTP-binding pr 99.2 3.4E-11 1.2E-15 100.7 6.4 112 17-167 3-129 (307)
148 2q3h_A RAS homolog gene family 99.1 9E-12 3.1E-16 96.2 2.2 115 14-167 17-138 (201)
149 2fh5_B SR-beta, signal recogni 99.1 8.2E-11 2.8E-15 91.8 7.6 86 14-139 4-90 (214)
150 3c5c_A RAS-like protein 12; GD 99.1 7E-12 2.4E-16 96.5 1.2 90 11-140 15-104 (187)
151 3gj0_A GTP-binding nuclear pro 99.1 6.2E-12 2.1E-16 99.0 0.6 113 15-167 13-133 (221)
152 3con_A GTPase NRAS; structural 99.1 1E-10 3.4E-15 89.4 7.1 88 14-140 18-105 (190)
153 2qu8_A Putative nucleolar GTP- 99.1 2.2E-11 7.4E-16 96.7 3.2 109 17-167 29-156 (228)
154 3q3j_B RHO-related GTP-binding 99.1 2E-11 6.8E-16 96.3 2.9 114 15-167 25-145 (214)
155 1mky_A Probable GTP-binding pr 99.1 2.2E-11 7.6E-16 106.5 3.3 112 16-167 179-306 (439)
156 3lvq_E ARF-GAP with SH3 domain 99.1 1.3E-11 4.4E-16 109.1 1.2 109 16-167 321-437 (497)
157 1x3s_A RAS-related protein RAB 99.1 4.2E-11 1.4E-15 91.4 3.9 87 16-140 14-100 (195)
158 2aka_B Dynamin-1; fusion prote 99.1 1.1E-10 3.6E-15 95.9 5.7 63 104-167 125-206 (299)
159 1xzp_A Probable tRNA modificat 99.1 6.1E-12 2.1E-16 111.9 -2.3 110 18-167 244-364 (482)
160 3b1v_A Ferrous iron uptake tra 99.1 1.2E-11 4.1E-16 102.3 -1.0 110 17-167 3-121 (272)
161 1m7b_A RND3/RHOE small GTP-bin 99.0 1.9E-10 6.4E-15 87.8 5.7 113 15-167 5-125 (184)
162 2j69_A Bacterial dynamin-like 99.0 1.2E-10 4.1E-15 107.6 5.1 63 104-167 174-244 (695)
163 1gwn_A RHO-related GTP-binding 99.0 3.6E-10 1.2E-14 88.6 5.8 92 10-140 19-112 (205)
164 2gco_A H9, RHO-related GTP-bin 99.0 4.1E-10 1.4E-14 87.3 5.8 112 17-167 25-143 (201)
165 3ihw_A Centg3; RAS, centaurin, 99.0 1E-09 3.5E-14 84.3 7.0 85 11-140 14-98 (184)
166 2wkq_A NPH1-1, RAS-related C3 99.0 3.1E-10 1E-14 93.9 3.8 112 16-167 154-273 (332)
167 2p67_A LAO/AO transport system 99.0 6.9E-10 2.4E-14 94.1 6.0 60 104-167 149-208 (341)
168 2cxx_A Probable GTP-binding pr 98.9 3.6E-10 1.2E-14 85.8 3.8 23 18-40 2-24 (190)
169 4a9a_A Ribosome-interacting GT 98.9 1.1E-09 3.6E-14 94.7 6.5 83 18-140 73-162 (376)
170 1lnz_A SPO0B-associated GTP-bi 98.9 2.7E-10 9.2E-15 97.2 2.8 36 104-139 206-248 (342)
171 2iwr_A Centaurin gamma 1; ANK 98.9 1.3E-09 4.6E-14 82.1 5.8 84 12-140 2-85 (178)
172 3t34_A Dynamin-related protein 98.9 8.2E-10 2.8E-14 94.0 4.9 64 104-167 136-217 (360)
173 1pui_A ENGB, probable GTP-bind 98.9 4.8E-10 1.6E-14 87.0 3.0 30 12-41 21-50 (210)
174 3dpu_A RAB family protein; roc 98.9 2.1E-10 7.1E-15 102.6 1.1 123 15-167 39-164 (535)
175 1wxq_A GTP-binding protein; st 98.9 1.9E-09 6.6E-14 93.6 6.2 37 104-140 71-114 (397)
176 3p32_A Probable GTPase RV1496/ 98.9 5.3E-09 1.8E-13 89.1 8.7 61 103-167 171-231 (355)
177 3cbq_A GTP-binding protein REM 98.9 1.9E-09 6.4E-14 83.6 5.1 88 15-140 21-109 (195)
178 4dkx_A RAS-related protein RAB 98.8 8.4E-10 2.9E-14 88.1 2.6 87 16-140 12-98 (216)
179 2ohf_A Protein OLA1, GTP-bindi 98.8 4E-09 1.4E-13 91.7 6.9 102 16-140 21-129 (396)
180 2e87_A Hypothetical protein PH 98.8 1.9E-09 6.4E-14 91.8 4.6 25 16-40 166-190 (357)
181 2qtf_A Protein HFLX, GTP-bindi 98.8 9.1E-09 3.1E-13 88.3 8.9 82 18-140 180-270 (364)
182 2x2e_A Dynamin-1; nitration, h 98.8 2.4E-09 8.1E-14 91.0 4.9 25 16-40 30-54 (353)
183 2f9l_A RAB11B, member RAS onco 98.8 4.2E-09 1.4E-13 81.5 4.6 86 17-140 5-90 (199)
184 2www_A Methylmalonic aciduria 98.8 6.7E-09 2.3E-13 88.5 6.2 58 104-167 167-226 (349)
185 2qag_A Septin-2, protein NEDD5 98.8 2.5E-09 8.4E-14 91.6 2.8 26 15-40 35-60 (361)
186 3zvr_A Dynamin-1; hydrolase, D 98.8 5E-09 1.7E-13 97.7 4.9 63 104-167 150-231 (772)
187 1jal_A YCHF protein; nucleotid 98.7 7.2E-09 2.5E-13 89.1 5.4 37 104-140 66-109 (363)
188 2zej_A Dardarin, leucine-rich 98.7 1.2E-08 4E-13 78.0 5.9 37 104-140 56-92 (184)
189 2j37_W Signal recognition part 98.6 2.6E-08 9.1E-13 89.0 4.1 62 104-166 184-253 (504)
190 2dby_A GTP-binding protein; GD 98.6 1.1E-07 3.8E-12 81.8 7.8 37 104-140 69-112 (368)
191 1oix_A RAS-related protein RAB 98.6 1.9E-08 6.7E-13 77.5 2.4 86 17-140 29-114 (191)
192 2qm8_A GTPase/ATPase; G protei 98.5 1.1E-07 3.9E-12 80.5 6.5 59 103-166 147-206 (337)
193 2wsm_A Hydrogenase expression/ 98.5 2.9E-08 9.9E-13 77.7 2.1 25 15-39 28-52 (221)
194 3c5h_A Glucocorticoid receptor 98.5 5.7E-09 1.9E-13 84.7 -2.9 26 14-39 16-50 (255)
195 2g3y_A GTP-binding protein GEM 98.4 9.5E-07 3.3E-11 69.9 9.5 26 15-40 35-60 (211)
196 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.5E-07 1.2E-11 79.3 6.2 36 104-139 85-127 (392)
197 2cjw_A GTP-binding protein GEM 98.3 3.4E-07 1.2E-11 70.5 4.3 24 16-39 5-28 (192)
198 1yrb_A ATP(GTP)binding protein 98.3 5.3E-07 1.8E-11 72.2 5.0 62 104-167 109-185 (262)
199 1f5n_A Interferon-induced guan 98.3 2.2E-07 7.5E-12 84.5 1.7 26 15-40 36-61 (592)
200 1puj_A YLQF, conserved hypothe 98.2 1.1E-06 3.7E-11 72.8 4.7 26 16-41 119-144 (282)
201 2qag_C Septin-7; cell cycle, c 98.1 8.3E-07 2.8E-11 77.5 2.7 25 17-41 31-55 (418)
202 3r7w_B Gtpase2, GTP-binding pr 98.1 1.2E-06 4.3E-11 74.3 3.5 62 104-167 46-120 (331)
203 3ec1_A YQEH GTPase; atnos1, at 98.0 1.2E-06 4.2E-11 75.0 1.9 24 17-40 162-185 (369)
204 1udx_A The GTP-binding protein 98.0 3E-06 1E-10 74.0 4.2 24 17-40 157-180 (416)
205 2v3c_C SRP54, signal recogniti 98.0 1E-05 3.6E-10 70.8 7.5 62 104-166 181-251 (432)
206 2qag_B Septin-6, protein NEDD5 98.0 3.5E-06 1.2E-10 73.8 3.8 24 18-41 43-66 (427)
207 3h2y_A GTPase family protein; 98.0 2.4E-06 8.2E-11 73.2 2.6 24 17-40 160-183 (368)
208 2qnr_A Septin-2, protein NEDD5 98.0 2.2E-06 7.5E-11 71.4 2.3 26 15-40 16-41 (301)
209 3cnl_A YLQF, putative uncharac 97.9 6.1E-06 2.1E-10 67.5 3.3 24 18-41 100-123 (262)
210 3kl4_A SRP54, signal recogniti 97.9 9.3E-06 3.2E-10 71.2 4.5 23 16-38 96-118 (433)
211 3dm5_A SRP54, signal recogniti 97.5 0.0002 7E-09 62.9 7.7 23 16-38 99-121 (443)
212 3q5d_A Atlastin-1; G protein, 97.4 4.4E-05 1.5E-09 67.2 2.2 26 15-40 65-90 (447)
213 2xxa_A Signal recognition part 97.4 0.00035 1.2E-08 61.1 7.8 24 15-38 98-121 (433)
214 1j8m_F SRP54, signal recogniti 97.4 0.00031 1.1E-08 58.3 6.6 37 104-140 181-225 (297)
215 1t9h_A YLOQ, probable GTPase E 97.3 5.7E-05 2E-09 63.3 1.6 25 17-41 173-197 (307)
216 3asz_A Uridine kinase; cytidin 97.3 9.6E-05 3.3E-09 57.2 2.7 26 14-39 3-28 (211)
217 4eun_A Thermoresistant glucoki 97.3 0.00012 4.1E-09 56.5 3.0 30 10-39 22-51 (200)
218 3sop_A Neuronal-specific septi 97.3 9.8E-05 3.3E-09 60.5 2.3 23 18-40 3-25 (270)
219 1lvg_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 55.9 2.8 23 17-39 4-26 (198)
220 1zp6_A Hypothetical protein AT 97.1 0.00024 8.2E-09 53.9 3.2 26 15-40 7-32 (191)
221 3ney_A 55 kDa erythrocyte memb 97.1 0.00027 9.3E-09 55.6 3.4 31 9-39 11-41 (197)
222 1zu4_A FTSY; GTPase, signal re 97.1 0.00054 1.9E-08 57.5 5.4 25 15-39 103-127 (320)
223 1ye8_A Protein THEP1, hypothet 97.1 0.00027 9.2E-09 54.3 2.8 22 19-40 2-23 (178)
224 3tr0_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 53.7 3.1 23 18-40 8-30 (205)
225 1znw_A Guanylate kinase, GMP k 97.0 0.00027 9.1E-09 54.9 2.7 25 17-41 20-44 (207)
226 3c8u_A Fructokinase; YP_612366 97.0 0.00029 1E-08 54.7 2.9 25 16-40 21-45 (208)
227 1kgd_A CASK, peripheral plasma 97.0 0.00033 1.1E-08 53.3 3.0 23 18-40 6-28 (180)
228 3a00_A Guanylate kinase, GMP k 97.0 0.00031 1.1E-08 53.6 2.8 23 18-40 2-24 (186)
229 2j41_A Guanylate kinase; GMP, 97.0 0.00039 1.3E-08 53.1 3.1 26 16-41 5-30 (207)
230 3tif_A Uncharacterized ABC tra 97.0 0.00037 1.3E-08 55.8 2.9 25 17-41 31-55 (235)
231 1z6g_A Guanylate kinase; struc 96.9 0.00047 1.6E-08 54.3 3.0 25 16-40 22-46 (218)
232 2pcj_A ABC transporter, lipopr 96.9 0.00044 1.5E-08 55.0 2.6 24 18-41 31-54 (224)
233 2onk_A Molybdate/tungstate ABC 96.8 0.00058 2E-08 55.0 3.0 24 18-41 25-48 (240)
234 1s96_A Guanylate kinase, GMP k 96.8 0.0006 2E-08 54.1 3.0 24 18-41 17-40 (219)
235 4g1u_C Hemin import ATP-bindin 96.8 0.00058 2E-08 55.8 2.9 24 18-41 38-61 (266)
236 2cbz_A Multidrug resistance-as 96.8 0.00059 2E-08 54.7 2.9 25 17-41 31-55 (237)
237 1g6h_A High-affinity branched- 96.8 0.00059 2E-08 55.3 2.9 24 18-41 34-57 (257)
238 1b0u_A Histidine permease; ABC 96.8 0.0006 2.1E-08 55.5 2.9 24 18-41 33-56 (262)
239 1knq_A Gluconate kinase; ALFA/ 96.8 0.00075 2.6E-08 50.5 3.2 25 15-39 6-30 (175)
240 3gfo_A Cobalt import ATP-bindi 96.8 0.00062 2.1E-08 56.0 2.9 24 18-41 35-58 (275)
241 2pze_A Cystic fibrosis transme 96.8 0.00064 2.2E-08 54.2 2.9 24 18-41 35-58 (229)
242 1mv5_A LMRA, multidrug resista 96.8 0.00064 2.2E-08 54.6 2.9 26 16-41 27-52 (243)
243 1sgw_A Putative ABC transporte 96.8 0.00069 2.4E-08 53.7 2.9 24 18-41 36-59 (214)
244 1ji0_A ABC transporter; ATP bi 96.8 0.00068 2.3E-08 54.4 2.9 24 18-41 33-56 (240)
245 2ff7_A Alpha-hemolysin translo 96.7 0.00069 2.4E-08 54.7 2.9 24 18-41 36-59 (247)
246 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00078 2.7E-08 54.4 3.0 23 18-40 30-52 (250)
247 1htw_A HI0065; nucleotide-bind 96.7 0.00086 2.9E-08 50.6 3.0 26 16-41 32-57 (158)
248 4gp7_A Metallophosphoesterase; 96.7 0.00075 2.6E-08 51.0 2.7 21 18-38 10-30 (171)
249 2olj_A Amino acid ABC transpor 96.7 0.00077 2.6E-08 55.0 2.9 24 18-41 51-74 (263)
250 2ghi_A Transport protein; mult 96.7 0.00076 2.6E-08 54.8 2.9 25 17-41 46-70 (260)
251 1vpl_A ABC transporter, ATP-bi 96.7 0.00079 2.7E-08 54.7 2.9 24 18-41 42-65 (256)
252 3tau_A Guanylate kinase, GMP k 96.7 0.00099 3.4E-08 51.8 3.4 24 17-40 8-31 (208)
253 1tq4_A IIGP1, interferon-induc 96.7 0.00079 2.7E-08 58.6 3.0 24 18-41 70-93 (413)
254 3b85_A Phosphate starvation-in 96.7 0.00065 2.2E-08 53.5 2.2 22 19-40 24-45 (208)
255 2hf9_A Probable hydrogenase ni 96.7 0.00064 2.2E-08 52.7 2.2 26 14-39 35-60 (226)
256 1kag_A SKI, shikimate kinase I 96.7 0.00084 2.9E-08 50.0 2.7 22 18-39 5-26 (173)
257 2qi9_C Vitamin B12 import ATP- 96.7 0.00085 2.9E-08 54.3 2.9 24 18-41 27-50 (249)
258 2ixe_A Antigen peptide transpo 96.7 0.00084 2.9E-08 54.9 2.9 24 18-41 46-69 (271)
259 3lnc_A Guanylate kinase, GMP k 96.7 0.0007 2.4E-08 53.2 2.2 24 17-40 27-51 (231)
260 2zu0_C Probable ATP-dependent 96.7 0.00093 3.2E-08 54.5 3.0 23 18-40 47-69 (267)
261 2yz2_A Putative ABC transporte 96.6 0.00089 3.1E-08 54.5 2.9 25 17-41 33-57 (266)
262 2ihy_A ABC transporter, ATP-bi 96.6 0.00093 3.2E-08 55.0 2.9 24 18-41 48-71 (279)
263 2nq2_C Hypothetical ABC transp 96.6 0.00094 3.2E-08 54.1 2.9 24 18-41 32-55 (253)
264 3aez_A Pantothenate kinase; tr 96.6 0.001 3.5E-08 55.6 3.1 26 15-40 88-113 (312)
265 2rcn_A Probable GTPase ENGC; Y 96.6 0.0011 3.6E-08 56.7 3.1 24 18-41 216-239 (358)
266 2jeo_A Uridine-cytidine kinase 96.6 0.0012 4.1E-08 52.6 3.1 24 16-39 24-47 (245)
267 2eyu_A Twitching motility prot 96.6 0.0012 4E-08 53.8 3.1 26 15-40 23-48 (261)
268 3uie_A Adenylyl-sulfate kinase 96.6 0.0012 4E-08 50.8 2.9 26 14-39 22-47 (200)
269 2v9p_A Replication protein E1; 96.6 0.0011 3.9E-08 55.3 3.0 24 16-39 125-148 (305)
270 2bbw_A Adenylate kinase 4, AK4 96.5 0.0015 5E-08 51.9 3.4 25 17-41 27-54 (246)
271 1cke_A CK, MSSA, protein (cyti 96.5 0.0014 4.8E-08 50.9 3.2 22 18-39 6-27 (227)
272 3t61_A Gluconokinase; PSI-biol 96.5 0.0015 5.2E-08 50.0 3.4 22 17-38 18-39 (202)
273 1u0l_A Probable GTPase ENGC; p 96.5 0.0012 4.2E-08 54.5 2.8 24 18-41 170-193 (301)
274 2qor_A Guanylate kinase; phosp 96.5 0.0016 5.6E-08 50.2 3.3 23 17-39 12-34 (204)
275 2pjz_A Hypothetical protein ST 96.5 0.0014 4.8E-08 53.5 2.9 25 17-41 30-54 (263)
276 3lw7_A Adenylate kinase relate 96.5 0.0015 5.3E-08 47.8 2.9 20 18-37 2-21 (179)
277 2bdt_A BH3686; alpha-beta prot 96.4 0.0015 5.2E-08 49.4 2.9 21 19-39 4-24 (189)
278 3tui_C Methionine import ATP-b 96.4 0.0015 5.2E-08 56.0 3.0 24 18-41 55-78 (366)
279 2ehv_A Hypothetical protein PH 96.4 0.0016 5.5E-08 51.0 3.0 21 18-38 31-51 (251)
280 2bbs_A Cystic fibrosis transme 96.4 0.0014 4.8E-08 54.2 2.6 24 18-41 65-88 (290)
281 3tqc_A Pantothenate kinase; bi 96.4 0.0018 6.1E-08 54.5 3.2 24 16-39 91-114 (321)
282 4a74_A DNA repair and recombin 96.4 0.0014 4.7E-08 50.7 2.4 22 18-39 26-47 (231)
283 2i3b_A HCR-ntpase, human cance 96.4 0.0016 5.6E-08 50.4 2.8 22 19-40 3-24 (189)
284 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0015 5.2E-08 55.8 2.7 24 18-41 31-54 (359)
285 1y63_A LMAJ004144AAA protein; 96.4 0.0022 7.5E-08 48.7 3.3 24 16-39 9-32 (184)
286 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.3E-08 47.7 2.8 20 19-38 3-22 (173)
287 3vaa_A Shikimate kinase, SK; s 96.4 0.0021 7.3E-08 49.3 3.3 24 16-39 24-47 (199)
288 1jjv_A Dephospho-COA kinase; P 96.4 0.0019 6.5E-08 49.6 3.0 22 18-39 3-24 (206)
289 1ex7_A Guanylate kinase; subst 96.3 0.0021 7.1E-08 49.9 3.2 22 18-39 2-23 (186)
290 1z47_A CYSA, putative ABC-tran 96.3 0.0018 6.1E-08 55.3 3.0 24 18-41 42-65 (355)
291 2yyz_A Sugar ABC transporter, 96.3 0.0018 6.2E-08 55.3 3.0 24 18-41 30-53 (359)
292 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0016 5.4E-08 54.8 2.5 24 18-41 172-195 (330)
293 2it1_A 362AA long hypothetical 96.3 0.0019 6.5E-08 55.2 3.0 24 18-41 30-53 (362)
294 3nh6_A ATP-binding cassette SU 96.3 0.0014 4.6E-08 54.8 2.0 25 17-41 80-104 (306)
295 1g29_1 MALK, maltose transport 96.3 0.0019 6.6E-08 55.3 3.0 24 18-41 30-53 (372)
296 3rlf_A Maltose/maltodextrin im 96.3 0.002 6.8E-08 55.5 3.0 24 18-41 30-53 (381)
297 1v43_A Sugar-binding transport 96.3 0.002 6.9E-08 55.2 3.0 24 18-41 38-61 (372)
298 2gza_A Type IV secretion syste 96.3 0.0018 6.1E-08 55.0 2.7 26 16-41 174-199 (361)
299 2yv5_A YJEQ protein; hydrolase 96.3 0.002 6.9E-08 53.3 2.9 22 17-38 165-186 (302)
300 1qf9_A UMP/CMP kinase, protein 96.3 0.0024 8.1E-08 47.9 3.1 22 17-38 6-27 (194)
301 1tev_A UMP-CMP kinase; ploop, 96.3 0.0023 7.8E-08 48.1 3.0 22 17-38 3-24 (196)
302 2if2_A Dephospho-COA kinase; a 96.3 0.0019 6.4E-08 49.5 2.5 21 19-39 3-23 (204)
303 2qt1_A Nicotinamide riboside k 96.3 0.0024 8.1E-08 49.2 3.1 24 17-40 21-44 (207)
304 1qhx_A CPT, protein (chloramph 96.3 0.0027 9.2E-08 47.3 3.3 22 18-39 4-25 (178)
305 1kht_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 47.9 3.0 22 17-38 3-24 (192)
306 2yvu_A Probable adenylyl-sulfa 96.3 0.0028 9.7E-08 47.9 3.4 25 15-39 11-35 (186)
307 1sq5_A Pantothenate kinase; P- 96.3 0.0021 7.3E-08 53.2 2.9 24 16-39 79-102 (308)
308 3jvv_A Twitching mobility prot 96.2 0.002 6.8E-08 54.9 2.7 25 16-40 122-146 (356)
309 1ly1_A Polynucleotide kinase; 96.2 0.0027 9.1E-08 47.2 3.1 22 18-39 3-24 (181)
310 4e22_A Cytidylate kinase; P-lo 96.2 0.0029 9.9E-08 50.7 3.5 22 17-38 27-48 (252)
311 3ec2_A DNA replication protein 96.2 0.002 6.7E-08 48.5 2.3 23 17-39 38-60 (180)
312 3iij_A Coilin-interacting nucl 96.2 0.0031 1.1E-07 47.3 3.4 23 16-38 10-32 (180)
313 1nn5_A Similar to deoxythymidy 96.2 0.0027 9.1E-08 48.7 3.0 23 16-38 8-30 (215)
314 2plr_A DTMP kinase, probable t 96.1 0.0032 1.1E-07 48.0 3.2 22 17-38 4-25 (213)
315 2f1r_A Molybdopterin-guanine d 96.1 0.0011 3.6E-08 50.8 0.4 22 19-40 4-25 (171)
316 3d31_A Sulfate/molybdate ABC t 96.1 0.0017 5.9E-08 55.2 1.8 24 18-41 27-50 (348)
317 1rz3_A Hypothetical protein rb 96.1 0.0028 9.5E-08 48.9 2.8 24 16-39 21-44 (201)
318 1lw7_A Transcriptional regulat 96.1 0.002 6.9E-08 54.4 2.1 24 18-41 171-194 (365)
319 3trf_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 47.4 3.0 22 17-38 5-26 (185)
320 1uf9_A TT1252 protein; P-loop, 96.1 0.0031 1E-07 47.9 2.9 23 17-39 8-30 (203)
321 2oap_1 GSPE-2, type II secreti 96.1 0.0026 8.9E-08 56.7 2.7 25 17-41 260-284 (511)
322 1odf_A YGR205W, hypothetical 3 96.1 0.0037 1.3E-07 51.6 3.4 25 15-39 29-53 (290)
323 3gd7_A Fusion complex of cysti 96.1 0.0027 9.3E-08 54.8 2.7 23 19-41 49-71 (390)
324 2ewv_A Twitching motility prot 96.1 0.0031 1E-07 53.8 3.0 26 15-40 134-159 (372)
325 1np6_A Molybdopterin-guanine d 96.0 0.004 1.4E-07 47.7 3.3 22 18-39 7-28 (174)
326 3cm0_A Adenylate kinase; ATP-b 96.0 0.0034 1.2E-07 47.1 2.8 22 17-38 4-25 (186)
327 1rj9_A FTSY, signal recognitio 96.0 0.0036 1.2E-07 52.1 3.2 24 16-39 101-124 (304)
328 2vp4_A Deoxynucleoside kinase; 96.0 0.0036 1.2E-07 49.3 3.1 24 16-39 19-42 (230)
329 2rhm_A Putative kinase; P-loop 96.0 0.0037 1.3E-07 47.0 2.9 22 17-38 5-26 (193)
330 1oxx_K GLCV, glucose, ABC tran 96.0 0.0017 5.7E-08 55.3 1.0 24 18-41 32-55 (353)
331 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 47.4 2.8 21 19-39 2-22 (205)
332 2v54_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 47.1 3.3 23 17-39 4-26 (204)
333 1uj2_A Uridine-cytidine kinase 95.9 0.004 1.4E-07 49.6 3.1 25 14-38 19-43 (252)
334 2c95_A Adenylate kinase 1; tra 95.9 0.0042 1.4E-07 46.8 3.0 22 17-38 9-30 (196)
335 3szr_A Interferon-induced GTP- 95.9 0.0029 1E-07 57.4 2.5 24 18-41 46-69 (608)
336 2kjq_A DNAA-related protein; s 95.9 0.0033 1.1E-07 46.6 2.3 24 16-39 35-58 (149)
337 1nij_A Hypothetical protein YJ 95.9 0.0029 9.8E-08 52.7 2.1 24 17-40 4-27 (318)
338 3kta_A Chromosome segregation 95.9 0.0039 1.3E-07 46.8 2.7 20 19-38 28-47 (182)
339 1p9r_A General secretion pathw 95.9 0.0041 1.4E-07 54.1 3.0 25 16-40 166-190 (418)
340 1nks_A Adenylate kinase; therm 95.8 0.004 1.4E-07 46.6 2.6 20 19-38 3-22 (194)
341 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0034 1.2E-07 55.2 2.4 26 16-41 137-162 (460)
342 1aky_A Adenylate kinase; ATP:A 95.8 0.0053 1.8E-07 47.7 3.3 23 16-38 3-25 (220)
343 1xjc_A MOBB protein homolog; s 95.8 0.0052 1.8E-07 47.1 3.1 23 17-39 4-26 (169)
344 3fb4_A Adenylate kinase; psych 95.8 0.0045 1.5E-07 47.7 2.8 20 19-38 2-21 (216)
345 2wwf_A Thymidilate kinase, put 95.8 0.0047 1.6E-07 47.2 2.9 22 17-38 10-31 (212)
346 2cdn_A Adenylate kinase; phosp 95.8 0.0061 2.1E-07 46.6 3.4 23 16-38 19-41 (201)
347 3b9q_A Chloroplast SRP recepto 95.8 0.0053 1.8E-07 51.0 3.2 24 16-39 99-122 (302)
348 3e70_C DPA, signal recognition 95.8 0.0053 1.8E-07 51.7 3.2 25 15-39 127-151 (328)
349 2pez_A Bifunctional 3'-phospho 95.8 0.0058 2E-07 45.8 3.1 24 16-39 4-27 (179)
350 1via_A Shikimate kinase; struc 95.8 0.0056 1.9E-07 45.8 3.0 20 19-38 6-25 (175)
351 3dl0_A Adenylate kinase; phosp 95.7 0.0051 1.7E-07 47.5 2.8 20 19-38 2-21 (216)
352 3tlx_A Adenylate kinase 2; str 95.7 0.0062 2.1E-07 48.5 3.4 23 16-38 28-50 (243)
353 1vht_A Dephospho-COA kinase; s 95.7 0.006 2.1E-07 47.2 3.2 23 17-39 4-26 (218)
354 1ukz_A Uridylate kinase; trans 95.7 0.0067 2.3E-07 46.2 3.4 23 16-38 14-36 (203)
355 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0053 1.8E-07 54.9 3.1 24 18-41 48-71 (538)
356 1zd8_A GTP:AMP phosphotransfer 95.7 0.0055 1.9E-07 47.9 2.8 22 17-38 7-28 (227)
357 3ozx_A RNAse L inhibitor; ATP 95.7 0.0052 1.8E-07 55.0 2.9 24 18-41 26-49 (538)
358 4fid_A G protein alpha subunit 95.6 0.015 5.1E-07 49.2 5.4 36 103-138 160-195 (340)
359 3euj_A Chromosome partition pr 95.6 0.0055 1.9E-07 54.3 2.7 23 18-40 30-52 (483)
360 2bwj_A Adenylate kinase 5; pho 95.6 0.0066 2.3E-07 45.8 2.8 21 18-38 13-33 (199)
361 1gvn_B Zeta; postsegregational 95.5 0.0074 2.5E-07 49.5 3.2 23 16-38 32-54 (287)
362 3b60_A Lipid A export ATP-bind 95.5 0.0064 2.2E-07 54.6 3.1 24 18-41 370-393 (582)
363 3j16_B RLI1P; ribosome recycli 95.5 0.0064 2.2E-07 55.3 3.0 24 18-41 104-127 (608)
364 2pbr_A DTMP kinase, thymidylat 95.5 0.0072 2.5E-07 45.3 2.8 21 19-39 2-22 (195)
365 3b5x_A Lipid A export ATP-bind 95.5 0.0073 2.5E-07 54.2 3.3 24 18-41 370-393 (582)
366 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.0074 2.5E-07 46.3 2.9 22 18-39 24-45 (235)
367 1jbk_A CLPB protein; beta barr 95.5 0.0087 3E-07 44.0 3.2 25 15-39 41-65 (195)
368 2iyv_A Shikimate kinase, SK; t 95.5 0.008 2.7E-07 45.1 3.0 21 18-38 3-23 (184)
369 2vli_A Antibiotic resistance p 95.5 0.0055 1.9E-07 45.7 2.0 22 17-38 5-26 (183)
370 2z0h_A DTMP kinase, thymidylat 95.5 0.0075 2.6E-07 45.4 2.8 20 19-38 2-21 (197)
371 1e6c_A Shikimate kinase; phosp 95.5 0.0083 2.8E-07 44.3 3.0 20 19-38 4-23 (173)
372 4a82_A Cystic fibrosis transme 95.5 0.006 2E-07 54.8 2.5 24 18-41 368-391 (578)
373 2yl4_A ATP-binding cassette SU 95.4 0.0064 2.2E-07 54.8 2.7 24 18-41 371-394 (595)
374 2pt5_A Shikimate kinase, SK; a 95.4 0.0082 2.8E-07 44.2 2.9 20 19-38 2-21 (168)
375 2og2_A Putative signal recogni 95.4 0.0085 2.9E-07 51.1 3.2 24 16-39 156-179 (359)
376 3bk7_A ABC transporter ATP-bin 95.4 0.0072 2.5E-07 54.9 2.9 24 18-41 118-141 (607)
377 2x8a_A Nuclear valosin-contain 95.4 0.0073 2.5E-07 49.2 2.7 23 18-40 45-67 (274)
378 3qf4_B Uncharacterized ABC tra 95.4 0.0072 2.5E-07 54.5 2.9 25 17-41 381-405 (598)
379 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.0087 3E-07 44.3 2.8 20 19-38 25-44 (149)
380 1zuh_A Shikimate kinase; alpha 95.4 0.0088 3E-07 44.3 2.9 20 19-38 9-28 (168)
381 1puj_A YLQF, conserved hypothe 95.4 0.0053 1.8E-07 50.4 1.8 57 110-168 5-65 (282)
382 3ozx_A RNAse L inhibitor; ATP 95.4 0.0077 2.6E-07 53.9 2.9 23 19-41 296-318 (538)
383 1ixz_A ATP-dependent metallopr 95.4 0.01 3.4E-07 47.0 3.3 23 18-40 50-72 (254)
384 1in4_A RUVB, holliday junction 95.3 0.0096 3.3E-07 49.6 3.2 22 18-39 52-73 (334)
385 1zak_A Adenylate kinase; ATP:A 95.3 0.0095 3.2E-07 46.3 3.0 21 18-38 6-26 (222)
386 1gtv_A TMK, thymidylate kinase 95.3 0.0033 1.1E-07 48.2 0.3 21 19-39 2-22 (214)
387 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0085 2.9E-07 53.5 3.0 24 18-41 313-336 (538)
388 2p5t_B PEZT; postsegregational 95.3 0.0072 2.5E-07 48.3 2.3 24 16-39 31-54 (253)
389 1cr0_A DNA primase/helicase; R 95.2 0.0079 2.7E-07 48.9 2.4 22 18-39 36-57 (296)
390 2grj_A Dephospho-COA kinase; T 95.2 0.0092 3.1E-07 46.2 2.6 22 17-38 12-33 (192)
391 2f6r_A COA synthase, bifunctio 95.2 0.013 4.6E-07 47.7 3.7 22 17-38 75-96 (281)
392 3bk7_A ABC transporter ATP-bin 95.2 0.0097 3.3E-07 54.0 3.0 23 19-41 384-406 (607)
393 2yhs_A FTSY, cell division pro 95.2 0.011 3.7E-07 52.7 3.2 24 16-39 292-315 (503)
394 2ze6_A Isopentenyl transferase 95.2 0.011 3.7E-07 47.5 3.0 21 19-39 3-23 (253)
395 1svm_A Large T antigen; AAA+ f 95.2 0.011 3.6E-07 50.8 3.1 24 16-39 168-191 (377)
396 3qf4_A ABC transporter, ATP-bi 95.2 0.0085 2.9E-07 54.0 2.6 24 18-41 370-393 (587)
397 3ake_A Cytidylate kinase; CMP 95.2 0.013 4.3E-07 44.6 3.2 21 19-39 4-24 (208)
398 3r20_A Cytidylate kinase; stru 95.2 0.011 3.8E-07 47.4 3.0 22 17-38 9-30 (233)
399 3be4_A Adenylate kinase; malar 95.2 0.0096 3.3E-07 46.3 2.6 21 18-38 6-26 (217)
400 2obl_A ESCN; ATPase, hydrolase 95.1 0.0087 3E-07 50.6 2.4 22 19-40 73-94 (347)
401 1e4v_A Adenylate kinase; trans 95.1 0.01 3.5E-07 45.9 2.6 20 19-38 2-21 (214)
402 1m7g_A Adenylylsulfate kinase; 95.1 0.013 4.4E-07 45.2 3.2 25 15-39 23-47 (211)
403 3j16_B RLI1P; ribosome recycli 95.1 0.011 3.7E-07 53.8 3.1 22 20-41 381-402 (608)
404 1iy2_A ATP-dependent metallopr 95.1 0.011 3.8E-07 47.6 2.7 22 19-40 75-96 (278)
405 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.5E-07 47.0 3.1 22 18-39 5-26 (260)
406 3qf7_A RAD50; ABC-ATPase, ATPa 95.0 0.012 4.1E-07 49.9 3.0 20 19-38 25-44 (365)
407 1n0w_A DNA repair protein RAD5 95.0 0.012 4E-07 45.7 2.7 22 18-39 25-46 (243)
408 1ak2_A Adenylate kinase isoenz 95.0 0.015 5.3E-07 45.6 3.4 21 18-38 17-37 (233)
409 3nwj_A ATSK2; P loop, shikimat 95.0 0.012 4.2E-07 47.5 2.8 23 17-39 48-70 (250)
410 2dpy_A FLII, flagellum-specifi 94.9 0.011 3.7E-07 51.7 2.4 22 19-40 159-180 (438)
411 1a7j_A Phosphoribulokinase; tr 94.9 0.0091 3.1E-07 49.1 1.9 22 17-38 5-26 (290)
412 1qhl_A Protein (cell division 94.9 0.0023 7.8E-08 51.2 -1.7 22 19-40 29-50 (227)
413 2p65_A Hypothetical protein PF 94.9 0.011 3.9E-07 43.4 2.3 25 15-39 41-65 (187)
414 2cvh_A DNA repair and recombin 94.9 0.015 5E-07 44.5 2.9 22 18-39 21-42 (220)
415 3umf_A Adenylate kinase; rossm 94.9 0.017 5.8E-07 45.8 3.3 22 17-38 29-50 (217)
416 1q3t_A Cytidylate kinase; nucl 94.9 0.017 5.9E-07 45.4 3.3 24 16-39 15-38 (236)
417 2xb4_A Adenylate kinase; ATP-b 94.8 0.016 5.3E-07 45.4 2.9 20 19-38 2-21 (223)
418 1lv7_A FTSH; alpha/beta domain 94.8 0.018 6.2E-07 45.6 3.3 24 16-39 44-67 (257)
419 3cnl_A YLQF, putative uncharac 94.8 0.0079 2.7E-07 48.8 1.1 55 112-169 5-62 (262)
420 4eaq_A DTMP kinase, thymidylat 94.6 0.022 7.6E-07 45.0 3.3 24 16-39 25-48 (229)
421 3sr0_A Adenylate kinase; phosp 94.6 0.019 6.6E-07 44.9 2.9 20 19-38 2-21 (206)
422 3ohm_A Guanine nucleotide-bind 94.6 0.024 8.1E-07 47.7 3.6 36 103-138 166-201 (327)
423 2h92_A Cytidylate kinase; ross 94.6 0.021 7.2E-07 43.9 3.1 23 17-39 3-25 (219)
424 3bos_A Putative DNA replicatio 94.5 0.022 7.6E-07 43.7 3.2 24 16-39 51-74 (242)
425 2w58_A DNAI, primosome compone 94.4 0.024 8E-07 43.1 3.1 22 18-39 55-76 (202)
426 3d3q_A TRNA delta(2)-isopenten 94.4 0.021 7.2E-07 48.4 3.0 22 18-39 8-29 (340)
427 1ltq_A Polynucleotide kinase; 94.4 0.022 7.6E-07 46.1 3.1 22 18-39 3-24 (301)
428 4f4c_A Multidrug resistance pr 94.4 0.019 6.6E-07 56.4 3.0 26 16-41 443-468 (1321)
429 3ux8_A Excinuclease ABC, A sub 94.3 0.016 5.5E-07 52.8 2.2 20 19-38 350-369 (670)
430 3crm_A TRNA delta(2)-isopenten 94.3 0.027 9.1E-07 47.4 3.3 22 18-39 6-27 (323)
431 3qks_A DNA double-strand break 94.3 0.024 8.2E-07 43.9 2.8 20 19-38 25-44 (203)
432 2px0_A Flagellar biosynthesis 94.3 0.023 8E-07 46.8 2.9 24 16-39 104-127 (296)
433 2iw3_A Elongation factor 3A; a 94.2 0.013 4.5E-07 56.1 1.4 23 19-41 701-723 (986)
434 2chg_A Replication factor C sm 94.2 0.028 9.5E-07 42.2 3.0 23 17-39 38-60 (226)
435 1nlf_A Regulatory protein REPA 94.2 0.023 7.9E-07 45.8 2.6 22 18-39 31-52 (279)
436 1vma_A Cell division protein F 94.1 0.029 1E-06 46.6 3.2 25 15-39 102-126 (306)
437 4f4c_A Multidrug resistance pr 94.1 0.019 6.5E-07 56.5 2.3 25 16-40 1104-1128(1321)
438 3eph_A TRNA isopentenyltransfe 94.1 0.17 5.8E-06 43.9 8.0 22 18-39 3-24 (409)
439 1sxj_E Activator 1 40 kDa subu 94.0 0.028 9.7E-07 46.3 2.9 21 19-39 38-58 (354)
440 3g5u_A MCG1178, multidrug resi 94.0 0.026 8.8E-07 55.4 3.0 25 17-41 416-440 (1284)
441 4ag6_A VIRB4 ATPase, type IV s 94.0 0.035 1.2E-06 47.0 3.4 24 16-39 34-57 (392)
442 3qkt_A DNA double-strand break 93.9 0.031 1.1E-06 46.6 3.0 19 20-38 26-44 (339)
443 3foz_A TRNA delta(2)-isopenten 93.9 0.038 1.3E-06 46.4 3.4 23 17-39 10-32 (316)
444 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.038 1.3E-06 43.3 3.3 25 15-39 37-61 (262)
445 1e69_A Chromosome segregation 93.8 0.025 8.5E-07 46.8 2.2 20 19-38 26-45 (322)
446 3b9p_A CG5977-PA, isoform A; A 93.8 0.037 1.3E-06 44.5 3.3 24 16-39 53-76 (297)
447 1p5z_B DCK, deoxycytidine kina 93.8 0.027 9.2E-07 45.0 2.3 24 16-39 23-46 (263)
448 2iw3_A Elongation factor 3A; a 93.8 0.027 9.3E-07 53.9 2.7 22 18-39 462-483 (986)
449 3zvl_A Bifunctional polynucleo 93.7 0.04 1.4E-06 47.5 3.4 23 17-39 258-280 (416)
450 2qby_A CDC6 homolog 1, cell di 93.7 0.043 1.5E-06 45.1 3.4 25 15-39 43-67 (386)
451 3h4m_A Proteasome-activating n 93.7 0.043 1.5E-06 43.8 3.3 25 15-39 49-73 (285)
452 3cr8_A Sulfate adenylyltranfer 93.7 0.019 6.4E-07 51.6 1.3 24 16-39 368-391 (552)
453 4fcw_A Chaperone protein CLPB; 93.6 0.045 1.5E-06 44.1 3.3 24 16-39 46-69 (311)
454 1njg_A DNA polymerase III subu 93.6 0.05 1.7E-06 41.2 3.4 21 18-38 46-66 (250)
455 3cf0_A Transitional endoplasmi 93.6 0.043 1.5E-06 44.8 3.2 25 15-39 47-71 (301)
456 4aby_A DNA repair protein RECN 93.5 0.012 4E-07 50.0 -0.3 20 19-38 62-81 (415)
457 3n70_A Transport activator; si 93.5 0.053 1.8E-06 39.3 3.3 24 16-39 23-46 (145)
458 3exa_A TRNA delta(2)-isopenten 93.5 0.045 1.5E-06 46.0 3.2 23 17-39 3-25 (322)
459 3gmt_A Adenylate kinase; ssgci 93.4 0.045 1.6E-06 43.8 3.0 22 17-38 8-29 (230)
460 2dr3_A UPF0273 protein PH0284; 93.4 0.041 1.4E-06 42.6 2.7 21 18-38 24-44 (247)
461 1w1w_A Structural maintenance 93.4 0.041 1.4E-06 47.3 2.9 22 18-39 27-48 (430)
462 1pzn_A RAD51, DNA repair and r 93.3 0.036 1.2E-06 46.7 2.4 23 18-40 132-154 (349)
463 1zcb_A G alpha I/13; GTP-bindi 93.3 0.05 1.7E-06 46.2 3.2 37 103-139 200-236 (362)
464 2xtz_A Guanine nucleotide-bind 93.3 0.032 1.1E-06 47.3 2.0 36 103-138 182-217 (354)
465 3syl_A Protein CBBX; photosynt 93.2 0.053 1.8E-06 43.7 3.2 25 15-39 65-89 (309)
466 4b4t_L 26S protease subunit RP 93.2 0.14 4.8E-06 44.7 6.1 25 15-39 213-237 (437)
467 3a8t_A Adenylate isopentenyltr 93.2 0.055 1.9E-06 45.8 3.3 23 18-40 41-63 (339)
468 1tue_A Replication protein E1; 93.2 0.035 1.2E-06 44.1 1.9 21 19-39 60-80 (212)
469 1fnn_A CDC6P, cell division co 93.2 0.05 1.7E-06 45.0 3.0 21 19-39 46-66 (389)
470 2ocp_A DGK, deoxyguanosine kin 93.2 0.049 1.7E-06 42.8 2.8 21 18-38 3-23 (241)
471 2v1u_A Cell division control p 93.1 0.061 2.1E-06 44.3 3.5 25 15-39 42-66 (387)
472 1tf7_A KAIC; homohexamer, hexa 93.1 0.039 1.3E-06 48.8 2.4 20 18-37 40-59 (525)
473 2ga8_A Hypothetical 39.9 kDa p 93.1 0.062 2.1E-06 45.8 3.5 24 16-39 23-46 (359)
474 1l8q_A Chromosomal replication 93.1 0.058 2E-06 44.1 3.3 23 17-39 37-59 (324)
475 3g5u_A MCG1178, multidrug resi 93.0 0.052 1.8E-06 53.3 3.2 24 18-41 1060-1083(1284)
476 1ofh_A ATP-dependent HSL prote 93.0 0.064 2.2E-06 43.0 3.3 24 16-39 49-72 (310)
477 2o5v_A DNA replication and rep 92.9 0.052 1.8E-06 46.1 2.8 20 19-38 28-47 (359)
478 2qmh_A HPR kinase/phosphorylas 92.9 0.056 1.9E-06 42.6 2.8 23 17-39 34-56 (205)
479 1d2n_A N-ethylmaleimide-sensit 92.9 0.057 2E-06 43.0 2.9 26 14-39 61-86 (272)
480 2r62_A Cell division protease 92.7 0.039 1.3E-06 43.8 1.7 24 16-39 43-66 (268)
481 3t15_A Ribulose bisphosphate c 92.7 0.064 2.2E-06 43.8 3.0 25 15-39 34-58 (293)
482 1sxj_C Activator 1 40 kDa subu 92.7 0.053 1.8E-06 44.8 2.5 21 19-39 48-68 (340)
483 3co5_A Putative two-component 92.6 0.056 1.9E-06 39.2 2.3 24 16-39 26-49 (143)
484 3ld9_A DTMP kinase, thymidylat 92.5 0.078 2.7E-06 42.1 3.2 26 13-38 17-42 (223)
485 1xwi_A SKD1 protein; VPS4B, AA 92.4 0.081 2.8E-06 43.8 3.3 25 15-39 43-67 (322)
486 3auy_A DNA double-strand break 92.4 0.062 2.1E-06 45.4 2.6 20 19-38 27-46 (371)
487 3eie_A Vacuolar protein sortin 92.3 0.085 2.9E-06 43.4 3.2 25 15-39 49-73 (322)
488 4edh_A DTMP kinase, thymidylat 92.3 0.084 2.9E-06 41.4 3.1 24 15-38 4-27 (213)
489 3tqf_A HPR(Ser) kinase; transf 92.3 0.071 2.4E-06 41.2 2.6 22 18-39 17-38 (181)
490 1zcb_A G alpha I/13; GTP-bindi 92.1 0.08 2.7E-06 44.9 2.9 24 15-38 31-54 (362)
491 2qgz_A Helicase loader, putati 92.0 0.09 3.1E-06 43.4 3.1 23 17-39 152-174 (308)
492 1ewq_A DNA mismatch repair pro 92.0 0.071 2.4E-06 49.7 2.7 23 17-39 576-598 (765)
493 1sxj_D Activator 1 41 kDa subu 92.0 0.097 3.3E-06 42.8 3.2 22 18-39 59-80 (353)
494 3ux8_A Excinuclease ABC, A sub 92.0 0.065 2.2E-06 48.8 2.4 17 18-34 45-61 (670)
495 1cip_A Protein (guanine nucleo 92.0 0.073 2.5E-06 45.1 2.5 37 103-139 192-228 (353)
496 3hws_A ATP-dependent CLP prote 91.9 0.11 3.6E-06 43.4 3.4 23 16-38 50-72 (363)
497 3pfi_A Holliday junction ATP-d 91.9 0.11 3.7E-06 42.6 3.4 24 16-39 54-77 (338)
498 1tf7_A KAIC; homohexamer, hexa 91.8 0.073 2.5E-06 47.1 2.4 21 19-39 283-303 (525)
499 3lv8_A DTMP kinase, thymidylat 91.8 0.092 3.2E-06 42.0 2.8 23 16-38 26-48 (236)
500 1wb9_A DNA mismatch repair pro 91.8 0.092 3.2E-06 49.2 3.2 24 16-39 606-629 (800)
No 1
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.92 E-value=1.9e-26 Score=211.37 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=97.0
Q ss_pred CCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
++|||+|+||+|||||||+++|+ |. ..|..+.|++||+|++.....
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~------------------- 61 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS------------------- 61 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCC-------------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEE-------------------
Confidence 47999999999999999999997 32 245778999999999886633
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHH
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILM 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~ 156 (182)
+.|.+ ++||+||||||.||..++.++++.+|+||+||||.+| ++.||+.+++++ +..
T Consensus 62 ----------~~~~~--------~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G-V~~qT~~v~~~a~~~~lp~ 122 (638)
T 3j25_A 62 ----------FQWEN--------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG-VQAQTRILFHALRKMGIPT 122 (638)
T ss_dssp ----------CBCSS--------CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT-TCSHHHHHHHHHHHHTCSC
T ss_pred ----------EEECC--------EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCCe
Confidence 23444 8899999999999999999999999999999999999 999999988765 334
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
..++||+|...
T Consensus 123 i~~INKmDr~~ 133 (638)
T 3j25_A 123 IFFINKIDQNG 133 (638)
T ss_dssp EECCEECCSSS
T ss_pred EEEEecccccc
Confidence 58899999653
No 2
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.91 E-value=2.6e-26 Score=207.33 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=85.6
Q ss_pred CCcceEEECCCCCChHHHHhHHh---c----------------CCccchhhHhhhceeeeeccccceeeecCCCCCCCCc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS---G----------------VQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPA 76 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~---g----------------~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 76 (182)
+.|||+||||+|||||||+++|+ | ...|+++.|++||+|+....+.+
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-------------- 95 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-------------- 95 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE--------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE--------------
Confidence 57999999999999999999996 2 13467789999999998776432
Q ss_pred ccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh---
Q psy1174 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD--- 153 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~--- 153 (182)
.|.+ ++|||||||||.||..++.++++.+|+||+||||.+| ++.||+.+++++
T Consensus 96 ---------------~~~~--------~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G-V~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 96 ---------------PYRD--------RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG-VEAQTRKLMDVCRMR 151 (548)
T ss_dssp ---------------EETT--------EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB-SCHHHHHHHHHHHHT
T ss_pred ---------------EECC--------EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC-cccccHHHHHHHHHh
Confidence 2344 8999999999999999999999999999999999999 999999877654
Q ss_pred -HHHHhHhccchhhh
Q psy1174 154 -ILMATMLNGAAVMD 167 (182)
Q Consensus 154 -il~~~~~nk~d~~~ 167 (182)
+....|+||+|...
T Consensus 152 ~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 152 ATPVMTFVNKMDREA 166 (548)
T ss_dssp TCCEEEEEECTTSCC
T ss_pred CCceEEEEecccchh
Confidence 44558899999764
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.1e-25 Score=206.41 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=84.5
Q ss_pred CCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
.+|||+|+||+|||||||+++|+ |. ..|..+.|++||+|++.....+.. +..
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~-~~~------------ 78 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFW-KGS------------ 78 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEE-CCT------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEe-ccC------------
Confidence 46899999999999999999997 21 245778899999999887754332 110
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHH
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILM 156 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~ 156 (182)
+. ....+.||+||||||.||..++.++++.+|+||+||||.+| ++.||+.+++++ +..
T Consensus 79 ----------------~~-~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG-V~~qT~~v~~~a~~~~lp~ 140 (709)
T 4fn5_A 79 ----------------RG-QYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG-VEPQSETVWRQANKYGVPR 140 (709)
T ss_dssp ----------------TS-CSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHHTCCE
T ss_pred ----------------cC-CCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC-CchhHHHHHHHHHHcCCCe
Confidence 00 01128999999999999999999999999999999999999 999999988776 445
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
..++||+|...
T Consensus 141 i~~iNKiDr~~ 151 (709)
T 4fn5_A 141 IVYVNKMDRQG 151 (709)
T ss_dssp EEEEECSSSTT
T ss_pred EEEEccccccC
Confidence 58899999653
No 4
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=1.8e-21 Score=169.29 Aligned_cols=141 Identities=38% Similarity=0.634 Sum_probs=102.3
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCL 92 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (182)
.+++.++|+++||+|||||||+++|+|...+++++|.++|+|++.++....++.+++ +. +|...... +
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~--~~---~y~~~~~~-------~ 73 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPN--CG---RYSTSPVC-------P 73 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTT--TC---CEESSSBC-------T
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccc--cc---cccccccc-------c
Confidence 456778999999999999999999999888888899999999998887666544321 00 12211110 0
Q ss_pred CCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc-cccccccchhhHH-----HHhHhccchhh
Q psy1174 93 RSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK-TPEIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 93 ~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-~~qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
. +...+...++++|+|||||.+|..++.+++..+|++||||||.+| . +.||++++..+.. ...++||+|+.
T Consensus 74 ~--~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 74 Y--CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp T--TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred c--cCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 0 000111237899999999999999999999999999999999998 6 8899996543221 12458999987
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
+.
T Consensus 151 ~~ 152 (410)
T 1kk1_A 151 DK 152 (410)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 5
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=1.8e-21 Score=171.16 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=91.5
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcC----------------------------CccchhhHhhhceeeeeccccce
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGV----------------------------QTVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~----------------------------~~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
..++++++|+++||+|+|||||+++|++. ..+..+.|+++|+|++..+..+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34577899999999999999999999632 12455677888888887664321
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccc
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKT 143 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~ 143 (182)
...++++|+|||||.+|..++..+++.+|++||||||.+| ..
T Consensus 92 -------------------------------------~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g-~~ 133 (439)
T 3j2k_7 92 -------------------------------------TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG-EF 133 (439)
T ss_pred -------------------------------------cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-cc
Confidence 1127899999999999999999999999999999999998 54
Q ss_pred -------ccccccchhhHH-----HHhHhccchhh
Q psy1174 144 -------PEIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 144 -------~qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
+||++++..+.. ....+||+|+.
T Consensus 134 e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 134 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred ccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 799995543211 23568999974
No 6
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=3.9e-21 Score=167.14 Aligned_cols=142 Identities=37% Similarity=0.664 Sum_probs=97.1
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
+.+++.++|+++||+|||||||+++|++...+++..|.++|+|+..++....++.+++ ++ +|......
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~--~~---~y~~~~~~------- 70 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQ--CG---TYTTKPRC------- 70 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTT--TC---CEESSSBC-------
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccc--cc---cccccccc-------
Confidence 3456789999999999999999999999888888899999999998887666544321 11 23221110
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HHhHhccchhh
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
+. +...+...+.++|+|||||.+|..++.++++.+|++|||||+.+|....||++++..... ...++||+|+.
T Consensus 71 ~~--~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 71 PN--CLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp TT--SCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cc--cCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 00 000111237899999999999999999999999999999999998238899995543211 22558999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 149 ~ 149 (408)
T 1s0u_A 149 D 149 (408)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.83 E-value=1.5e-21 Score=173.57 Aligned_cols=123 Identities=20% Similarity=0.356 Sum_probs=85.1
Q ss_pred CccccccCCCcceEEECCCCCChHHHHhHHhcCC----ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 8 QSNWVSNEISSYPGTIGHVAHGKSTVVKAISGVQ----TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 8 ~~~~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~----~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
+.+....++.++|+++||+|+|||||+++|++.. .++...|.++|+|++..+..+..
T Consensus 10 ~~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------------------- 70 (482)
T 1wb1_A 10 EGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL------------------- 70 (482)
T ss_dssp ---CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-------------------
T ss_pred CcchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-------------------
Confidence 3344555677899999999999999999999876 56678889999999887754222
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
+.++++++|||||.+|..++..+++.+|++|||||+.+| +++||++++..+ +....+
T Consensus 71 ------------------~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 71 ------------------ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-PKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp ------------------TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-SCHHHHHHHHHHHHTTCCBCEE
T ss_pred ------------------CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-ccHHHHHHHHHHHHcCCCEEEE
Confidence 127899999999999999999999999999999999999 999999955322 112356
Q ss_pred hccchhhhH
Q psy1174 160 LNGAAVMDA 168 (182)
Q Consensus 160 ~nk~d~~~~ 168 (182)
+||+|+.+.
T Consensus 132 iNK~Dl~~~ 140 (482)
T 1wb1_A 132 ITKSDNAGT 140 (482)
T ss_dssp EECTTSSCH
T ss_pred EECCCcccc
Confidence 999998753
No 8
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.79 E-value=2.8e-20 Score=161.37 Aligned_cols=114 Identities=28% Similarity=0.435 Sum_probs=88.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC-------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~-------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (182)
+..+|+++||+|+|||||+++|++.. .+....|+++|+|++..+..+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~------------------- 62 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS------------------- 62 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------------
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------------
Confidence 56789999999999999999998531 1233455678888876542110
Q ss_pred CCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----H-HH
Q psy1174 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----L-MA 157 (182)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l-~~ 157 (182)
...++++|+|||||.+|..++..+++.+|++|+|||+.+| ...|+++++..+. . ..
T Consensus 63 ------------------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~~vp~ii 123 (397)
T 1d2e_A 63 ------------------TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVV 123 (397)
T ss_dssp ------------------CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-SCHHHHHHHHHHHHTTCCCEE
T ss_pred ------------------cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCeEE
Confidence 1127899999999999999999999999999999999999 8999999664321 1 13
Q ss_pred hHhccchhhh
Q psy1174 158 TMLNGAAVMD 167 (182)
Q Consensus 158 ~~~nk~d~~~ 167 (182)
.++||+|+.+
T Consensus 124 vviNK~Dl~~ 133 (397)
T 1d2e_A 124 VYVNKADAVQ 133 (397)
T ss_dssp EEEECGGGCS
T ss_pred EEEECcccCC
Confidence 5699999873
No 9
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=1.6e-20 Score=162.97 Aligned_cols=117 Identities=32% Similarity=0.468 Sum_probs=90.5
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcC--------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGV--------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPAC 77 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~--------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 77 (182)
..+++.++|+++||+|+|||||+++|++. ..+....|.++|+|++.....+.
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------- 71 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-------------- 71 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--------------
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec--------------
Confidence 44567789999999999999999999852 12345677889998876442110
Q ss_pred cccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH---
Q psy1174 78 YISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI--- 154 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i--- 154 (182)
...++++++|||||.+|..++..+++.+|++|+|||+.+| ...|+++++..+.
T Consensus 72 -----------------------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-~~~qt~~~l~~~~~~~ 127 (405)
T 2c78_A 72 -----------------------TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVG 127 (405)
T ss_dssp -----------------------CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-CCHHHHHHHHHHHHTT
T ss_pred -----------------------cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-CcHHHHHHHHHHHHcC
Confidence 0127899999999999999999999999999999999999 8889998664332
Q ss_pred -H-HHhHhccchhh
Q psy1174 155 -L-MATMLNGAAVM 166 (182)
Q Consensus 155 -l-~~~~~nk~d~~ 166 (182)
. ...++||+|+.
T Consensus 128 ip~iivviNK~Dl~ 141 (405)
T 2c78_A 128 VPYIVVFMNKVDMV 141 (405)
T ss_dssp CCCEEEEEECGGGC
T ss_pred CCEEEEEEECcccc
Confidence 1 23569999987
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=1.7e-20 Score=166.21 Aligned_cols=116 Identities=24% Similarity=0.257 Sum_probs=67.1
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhc---CC-------------------------ccchhhHhhhceeeeecccccee
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISG---VQ-------------------------TVRFKNELERNITIKLGYANAKI 64 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g---~~-------------------------~~~~~~e~~~g~t~~~~~~~~~~ 64 (182)
..++.++|+++||+|||||||+++|+. .. .+..+.|+++|+|++..+..+.
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~- 117 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE- 117 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-
Confidence 356678999999999999999999973 21 1233445667777776553211
Q ss_pred eecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcc--
Q psy1174 65 YKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK-- 142 (182)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-- 142 (182)
...++++|+|||||.+|..++.++++.+|++|||||+.+| .
T Consensus 118 ------------------------------------~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~~e 160 (467)
T 1r5b_A 118 ------------------------------------TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG-EFE 160 (467)
T ss_dssp ------------------------------------CSSEEEEECCCCC-----------TTSCSEEEEEEECSTT-HHH
T ss_pred ------------------------------------cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC-ccc
Confidence 1127899999999999999999999999999999999998 5
Q ss_pred -----cccccccchhhHH-----HHhHhccchhh
Q psy1174 143 -----TPEIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 143 -----~~qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
..||++++..+.. .+.++||+|+.
T Consensus 161 ~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp HTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred cccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 4799985543321 23569999984
No 11
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=6.5e-20 Score=162.04 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=88.2
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC---C-------------------------ccchhhHhhhceeeeeccccceee
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV---Q-------------------------TVRFKNELERNITIKLGYANAKIY 65 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~---~-------------------------~~~~~~e~~~g~t~~~~~~~~~~~ 65 (182)
+++.++|+++||+|+|||||+++|++. . .++.+.|+++|+|++..+..+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-- 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--
Confidence 456789999999999999999999842 1 1344567778888877653211
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc-
Q psy1174 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP- 144 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~- 144 (182)
...++++|+|||||.+|..++..+++.+|++|||||+.+| ...
T Consensus 82 -----------------------------------~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-~~~~ 125 (458)
T 1f60_A 82 -----------------------------------TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEA 125 (458)
T ss_dssp -----------------------------------CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHH
T ss_pred -----------------------------------cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-cccc
Confidence 1127899999999999999999999999999999999987 544
Q ss_pred ------cccccchhhHH-----HHhHhccchhh
Q psy1174 145 ------EIVDCPGHDIL-----MATMLNGAAVM 166 (182)
Q Consensus 145 ------qt~e~l~~~il-----~~~~~nk~d~~ 166 (182)
|+++++..+.. .+.++||+|+.
T Consensus 126 sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 126 GISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp HTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred ccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 88885432211 23469999987
No 12
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.9e-19 Score=157.78 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=83.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC------------------------------ccchhhHhhhceeeeecccccee
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ------------------------------TVRFKNELERNITIKLGYANAKI 64 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~------------------------------~~~~~~e~~~g~t~~~~~~~~~~ 64 (182)
++.++|+++||+|+|||||+++|++.. .+..+.|+++|+|++..+..+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 455799999999999999999997321 1223456667777776543211
Q ss_pred eecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc
Q psy1174 65 YKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP 144 (182)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~ 144 (182)
...++++++|||||.+|..++..+++.+|++|||||+.+| ...
T Consensus 101 ------------------------------------~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~~~ 143 (434)
T 1zun_B 101 ------------------------------------TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-VQT 143 (434)
T ss_dssp ------------------------------------CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-SCH
T ss_pred ------------------------------------cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-CcH
Confidence 1127899999999999999999999999999999999999 888
Q ss_pred cccccchhhHH-----HHhHhccchhhh
Q psy1174 145 EIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 145 qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
|+++++..+.. ...++||+|+.+
T Consensus 144 qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 144 QTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 99885533211 234599999875
No 13
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.77 E-value=1.7e-19 Score=158.25 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=80.4
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcC---C-------------------------ccchhhHhhhceeeeeccccce
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGV---Q-------------------------TVRFKNELERNITIKLGYANAK 63 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~---~-------------------------~~~~~~e~~~g~t~~~~~~~~~ 63 (182)
|++++.++|+++||+|+|||||+++|++. . .++.+.|+++|+|++..+..+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 34567889999999999999999999842 2 2334556678888877653211
Q ss_pred eeecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc--
Q psy1174 64 IYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-- 141 (182)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-- 141 (182)
+ ..++++++|||||.+|..++..+++.+|++|+|||+.+|.
T Consensus 81 -----------------------------~--------~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe 123 (435)
T 1jny_A 81 -----------------------------T--------KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123 (435)
T ss_dssp -----------------------------C--------SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHH
T ss_pred -----------------------------c--------CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccc
Confidence 1 1278999999999999999999999999999999999862
Q ss_pred ----ccccccccchhhH-----HHHhHhccchhhh
Q psy1174 142 ----KTPEIVDCPGHDI-----LMATMLNGAAVMD 167 (182)
Q Consensus 142 ----~~~qt~e~l~~~i-----l~~~~~nk~d~~~ 167 (182)
+..|+++++..+. ....++||+|+.+
T Consensus 124 ~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 5668888553221 1235699999875
No 14
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.76 E-value=1.4e-19 Score=164.89 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=79.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc---CC---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG---VQ---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g---~~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
.++||+++||+|||||||+++|+. .. .+....|+++|+|+......+.. ...
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~-~~~--------------- 68 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFY-KAK--------------- 68 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEE-ECT---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEE-EcC---------------
Confidence 468999999999999999999973 21 23456788899998766543221 100
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
....+.++|+|||||.+|..++.++++.+|++|+|||+.+| ++.||.+++..+ +....+
T Consensus 69 ----------------dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~a~~~~ipiIvv 131 (600)
T 2ywe_A 69 ----------------DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWKAVEQDLVIIPV 131 (600)
T ss_dssp ----------------TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHHHHCCCCEEEE
Confidence 01126899999999999999999999999999999999999 899998855332 223467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 132 iNKiDl~~ 139 (600)
T 2ywe_A 132 INKIDLPS 139 (600)
T ss_dssp EECTTSTT
T ss_pred EeccCccc
Confidence 99999864
No 15
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.75 E-value=2e-19 Score=163.80 Aligned_cols=119 Identities=23% Similarity=0.223 Sum_probs=75.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhc---CC---------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG---VQ---------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRS 83 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g---~~---------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
.++||+|+||+|||||||+++|+. .. .+....|+++|+|+......+.. ...
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~-~~~--------------- 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY-KAS--------------- 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEE-ECT---------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEE-ecC---------------
Confidence 468999999999999999999973 21 24556788899998766543221 100
Q ss_pred CCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 84 NKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
....+.++++|||||.+|..++.++++.+|++|+|||+.+| +..||.+++..+ +....+
T Consensus 67 ----------------~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~~~~~~ipiIvV 129 (599)
T 3cb4_D 67 ----------------DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYTAMEMDLEVVPV 129 (599)
T ss_dssp ----------------TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCEEEe
Confidence 00127899999999999999999999999999999999999 899998855332 223467
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 130 iNKiDl~~ 137 (599)
T 3cb4_D 130 LNKIDLPA 137 (599)
T ss_dssp EECTTSTT
T ss_pred eeccCccc
Confidence 99999865
No 16
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.74 E-value=7e-19 Score=151.80 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=80.2
Q ss_pred ceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCTG 98 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+|+++||+|+|||||+++|+ ++|+|++..+..+. +.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----------~~giTi~~~~~~~~-----------------------------~~---- 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----------KKGTSSDITMYNND-----------------------------KE---- 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----------EEEEESSSEEEEEC-----------------------------SS----
T ss_pred EEEEECCCCCCHHHHHHHHH-----------hCCEEEEeeEEEEe-----------------------------cC----
Confidence 89999999999999999997 47888877663211 11
Q ss_pred cccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HH-HhHhc-cchhhhH
Q psy1174 99 RFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LM-ATMLN-GAAVMDA 168 (182)
Q Consensus 99 ~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~-~~~~n-k~d~~~~ 168 (182)
.++++++|||||.+|..++..+++.+|++||||| .+| ...||++++..+. .. ..++| |+|+ +.
T Consensus 59 ----~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 59 ----GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLLGFKHGIIALTRSDST-HM 127 (370)
T ss_dssp ----SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH
T ss_pred ----CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH
Confidence 2789999999999999999999999999999999 888 9999999553321 11 45688 9998 53
No 17
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=8.2e-20 Score=166.15 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC----------------------------CccchhhHhhhceeeeeccccceee
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV----------------------------QTVRFKNELERNITIKLGYANAKIY 65 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~----------------------------~~~~~~~e~~~g~t~~~~~~~~~~~ 65 (182)
.+++++|+++||+|+|||||+++|++. ..+..+.|+++|+|++..+..+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-- 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-- 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE--
Confidence 456789999999999999999999621 12344566677888777653211
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----
Q psy1174 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA---- 141 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~---- 141 (182)
...++++|+|||||.+|..++..+++.+|++|||||+.+|.
T Consensus 252 -----------------------------------~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~g 296 (592)
T 3mca_A 252 -----------------------------------SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERG 296 (592)
T ss_dssp ------------------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTT
T ss_pred -----------------------------------eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccc
Confidence 11278999999999999999999999999999999999861
Q ss_pred c--cccccccchhhHH-----HHhHhccchhhh
Q psy1174 142 K--TPEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 142 ~--~~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
+ ..||++++..+.. .+.++||+|+.+
T Consensus 297 i~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp SCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred cccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 4 8899995533211 224689999874
No 18
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.73 E-value=1.5e-18 Score=166.82 Aligned_cols=116 Identities=34% Similarity=0.487 Sum_probs=81.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCccccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++.++|+++||+|+|||||+++|++. ..++.+.|.++|+|++.....+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~----------------- 355 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD----------------- 355 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-----------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-----------------
Confidence 466789999999999999999999853 12344567778888776442110
Q ss_pred CCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----
Q psy1174 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL----- 155 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il----- 155 (182)
...++++|+|||||.+|..++..+++.+|++|||||+.+| ...||++++..+..
T Consensus 356 --------------------~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG-v~~QTrEhL~ll~~lgIP~ 414 (1289)
T 3avx_A 356 --------------------TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVPY 414 (1289)
T ss_dssp --------------------CSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC-SCTTHHHHHHHHHHHTCSC
T ss_pred --------------------CCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc-CcHHHHHHHHHHHHcCCCe
Confidence 1127899999999999999999999999999999999999 89999996644321
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
.+.++||+|+.+
T Consensus 415 IIVVINKiDLv~ 426 (1289)
T 3avx_A 415 IIVFLNKCDMVD 426 (1289)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEEeeccccc
Confidence 135699999874
No 19
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=2.6e-18 Score=152.50 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=80.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcC---C-------------------------ccchhhHhhhceeeeeccccceee
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGV---Q-------------------------TVRFKNELERNITIKLGYANAKIY 65 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~---~-------------------------~~~~~~e~~~g~t~~~~~~~~~~~ 65 (182)
.++.++|+++|++|+|||||+++|++. . .+....|.++|+|++..+..+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 107 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-- 107 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--
Confidence 467789999999999999999999743 1 1223344555665555442211
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----
Q psy1174 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA---- 141 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~---- 141 (182)
...++++|+|||||.+|..++..+++.+|++|||||+.+|.
T Consensus 108 -----------------------------------~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~ 152 (483)
T 3p26_A 108 -----------------------------------THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152 (483)
T ss_dssp -----------------------------------CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred -----------------------------------cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence 12378999999999999999999999999999999999873
Q ss_pred --ccccccccchhhHH-----HHhHhccchhhh
Q psy1174 142 --KTPEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 142 --~~~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
+..|+++++..+.. .+..+||+|+.+
T Consensus 153 ~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred cchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 34678874432211 234599999875
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=2.7e-17 Score=142.72 Aligned_cols=137 Identities=34% Similarity=0.641 Sum_probs=86.5
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCccc
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCL 92 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (182)
.+++..+|+++|++|+|||||+++|++...++ ..++....++.+. .+..+..+.... .+.
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~ 63 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-----------KLGYAETNIGVCE--SCKKPEAYVTEP-------SCK 63 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-----------SSEEEEEEEEECT--TSCTTTTEESSS-------CCG
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccc-----------ccCccccceeecc--ccccccceeccc-------ccc
Confidence 35677899999999999999999999754321 1111111111111 111111111110 000
Q ss_pred CCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHH-----HHhHhccchhhh
Q psy1174 93 RSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 93 ~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
...........++++++|||||.+|..++..++..+|++|+|||+.+|....|+++++..+.. ...++||+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 64 SCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp GGTCCSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cccccccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 001111122337899999999999999999999999999999999998338899985533221 234689999876
Q ss_pred HH
Q psy1174 168 AA 169 (182)
Q Consensus 168 ~~ 169 (182)
..
T Consensus 144 ~~ 145 (403)
T 3sjy_A 144 KE 145 (403)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 21
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=2.7e-18 Score=158.88 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=92.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc---C------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG---V------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g---~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
...+||+|+||+|||||||+++|+. . ..++.+.|.++|+|+......+.. +
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~---~----------- 73 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW---S----------- 73 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE---C-----------
Confidence 3568999999999999999999962 1 134566788899998876643221 0
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
+.. .....+.++|||||||.+|..++.++++.+|++|+|||+.+| +..|+++++.++ +.
T Consensus 74 ---------------~~~-~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~ip 136 (704)
T 2rdo_7 74 ---------------GMA-KQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQPQSETVWRQANKYKVP 136 (704)
T ss_pred ---------------Ccc-ccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC
Confidence 000 001127899999999999999999999999999999999999 888998866543 23
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 137 ~ilviNKiD~~~ 148 (704)
T 2rdo_7 137 RIAFVNKMDRMG 148 (704)
T ss_pred EEEEEeCCCccc
Confidence 446799999764
No 22
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.72 E-value=1.1e-18 Score=157.01 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=89.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhc-------------------CCccchhhHhhhceeeeeccccceeeecCCCCCCCCc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG-------------------VQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPA 76 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g-------------------~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 76 (182)
..++|+|+||+|+|||||+++|+. ...++...|.++|+|+......+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~------------- 78 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP------------- 78 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-------------
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-------------
Confidence 467999999999999999999961 122345667788888766553221
Q ss_pred ccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh---
Q psy1174 77 CYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD--- 153 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~--- 153 (182)
+.+ ++++++|||||.+|...+.++++.+|++|+|||+..| +..++.+++..+
T Consensus 79 ----------------~~~--------~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t~~~~~~~~~~ 133 (528)
T 3tr5_A 79 ----------------YKD--------YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-VEPRTIKLMEVCRLR 133 (528)
T ss_dssp ----------------ETT--------EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHHTT
T ss_pred ----------------eCC--------EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHc
Confidence 122 7899999999999999999999999999999999999 888888755432
Q ss_pred -HHHHhHhccchhhh
Q psy1174 154 -ILMATMLNGAAVMD 167 (182)
Q Consensus 154 -il~~~~~nk~d~~~ 167 (182)
+....++||+|...
T Consensus 134 ~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 134 HTPIMTFINKMDRDT 148 (528)
T ss_dssp TCCEEEEEECTTSCC
T ss_pred CCCEEEEEeCCCCcc
Confidence 33457899999763
No 23
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5e-18 Score=154.92 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=87.7
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCC----------------------------ccchhhHhhhceeeeeccccceee
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQ----------------------------TVRFKNELERNITIKLGYANAKIY 65 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~----------------------------~~~~~~e~~~g~t~~~~~~~~~~~ 65 (182)
.++.++|+++|++|+|||||+++|++.. .+....|+++|+|++..+..+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-- 241 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-- 241 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE--
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe--
Confidence 4677899999999999999999998431 1133456677888776553211
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----
Q psy1174 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA---- 141 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~---- 141 (182)
...++++|+|||||.+|...+..+++.+|++|+|||+..|.
T Consensus 242 -----------------------------------~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~ 286 (611)
T 3izq_1 242 -----------------------------------THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286 (611)
T ss_dssp -----------------------------------CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTT
T ss_pred -----------------------------------cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCccccc
Confidence 11278999999999999999999999999999999999752
Q ss_pred --ccccccccchhhHH-----HHhHhccchhhh
Q psy1174 142 --KTPEIVDCPGHDIL-----MATMLNGAAVMD 167 (182)
Q Consensus 142 --~~~qt~e~l~~~il-----~~~~~nk~d~~~ 167 (182)
+..|+++++..+.. .+..+||+|+.+
T Consensus 287 ~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred chhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 35688884432211 234599999875
No 24
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=1.7e-18 Score=155.74 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=80.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC---C----------------ccchhhHhhhceeeeeccccceeeecCCCCCCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV---Q----------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRP 75 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~---~----------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 75 (182)
...++|+++||+|+|||||+++|+.. . .++.+.|.++|+|+......+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~------------- 77 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF------------- 77 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-------------
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-------------
Confidence 34689999999999999999999842 1 122344556666655433211
Q ss_pred cccccCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh--
Q psy1174 76 ACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD-- 153 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~-- 153 (182)
.+. .++++++|||||.+|...+.+++..+|++|+|||+.+| +..|+++++..+
T Consensus 78 ----------------~~~--------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-~~~~t~~~~~~~~~ 132 (529)
T 2h5e_A 78 ----------------PYH--------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-VEDRTRKLMEVTRL 132 (529)
T ss_dssp ----------------EET--------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHTT
T ss_pred ----------------EEC--------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-chHHHHHHHHHHHH
Confidence 112 27899999999999999999999999999999999999 888888755432
Q ss_pred --HHHHhHhccchhhh
Q psy1174 154 --ILMATMLNGAAVMD 167 (182)
Q Consensus 154 --il~~~~~nk~d~~~ 167 (182)
+....++||+|...
T Consensus 133 ~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEcCcCCcc
Confidence 33457899999764
No 25
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=4.7e-19 Score=158.41 Aligned_cols=111 Identities=21% Similarity=0.365 Sum_probs=85.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++||+|||||||+++|.+.. ......+|+|++.+... ..+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~---v~~~e~~GIT~~i~~~~-----------------------------v~~~- 49 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK---VASGEAGGITQHIGAYH-----------------------------VETE- 49 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH---HSBTTBCCCCCCSSCCC-----------------------------CCTT-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC---CccccCCCeeEeEEEEE-----------------------------EEEC-
Confidence 45789999999999999999998521 11122356666654421 1111
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~~~~nk~d~~~ 167 (182)
+++++|+|||||.+|...+.+++..+|++|||||+.+| +.+||.+++.++. ....++||+|+.+
T Consensus 50 -------~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 50 -------NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-VMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp -------SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-SCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred -------CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-ccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 26799999999999999999999999999999999999 9999999776542 2346799999864
No 26
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=3.9e-18 Score=160.56 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC-------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~-------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
...+||+|+||+|||||||+++|+.. ..+....|.++|+|+......+.. ..+.... ..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~-~~~~~~~------~~- 88 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYS-EMSDEDV------KE- 88 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEE-ECCHHHH------HH-
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEe-ccccccc------cc-
Confidence 45689999999999999999999832 223456677888888765433221 1000000 00
Q ss_pred CCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHH
Q psy1174 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMA 157 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~ 157 (182)
. ... .....+.++++|||||.+|...+.++++.+|++|+|||+.+| +..|+..++.++ +...
T Consensus 89 -i----~~~--------~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~p~i 154 (842)
T 1n0u_A 89 -I----KQK--------TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETVLRQALGERIKPV 154 (842)
T ss_dssp -C----SSC--------CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHHHHHHHHTTCEEE
T ss_pred -c----ccc--------ccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCeE
Confidence 0 000 001137899999999999999999999999999999999999 888888765543 2234
Q ss_pred hHhccchhh
Q psy1174 158 TMLNGAAVM 166 (182)
Q Consensus 158 ~~~nk~d~~ 166 (182)
.++||+|..
T Consensus 155 lviNK~D~~ 163 (842)
T 1n0u_A 155 VVINKVDRA 163 (842)
T ss_dssp EEEECHHHH
T ss_pred EEEECCCcc
Confidence 679999976
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.65 E-value=2.7e-17 Score=151.92 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=79.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cC------------CccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~------------~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
...++|+|+||+|||||||+++|+ +. ..++...|+++++|+......+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~---------------- 73 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF---------------- 73 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE----------------
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE----------------
Confidence 346899999999999999999998 22 12344556677777765543211
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
+.+ +.++++|||||.+|...+.+++..+|++|+|||+.+| ...++.+.+.++ +.
T Consensus 74 -------------~~~--------~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~~~~~~~~~~p 131 (691)
T 1dar_A 74 -------------WKD--------HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG-VEPQSETVWRQAEKYKVP 131 (691)
T ss_dssp -------------ETT--------EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHTTCC
T ss_pred -------------ECC--------eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC-cchhhHHHHHHHHHcCCC
Confidence 112 7899999999999999999999999999999999999 888887755443 22
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 132 ~ivviNKiD~~~ 143 (691)
T 1dar_A 132 RIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 346799999764
No 28
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.64 E-value=5.3e-18 Score=152.72 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=84.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.+.|+++||+|||||||+++|.+.. +.....+++|.++.+..+..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~---~~~~~~~giT~~i~~~~v~~-------------------------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ---VAAMEAGGITQHIGAFLVSL-------------------------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH---HHHSSSCCBCCCTTSCCBCS--------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---cccccCCceeEEEeEEEEEe--------------------------------
Confidence 4679999999999999999998532 12223355666554422110
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----HHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----LMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l~~~~~nk~d~~~ 167 (182)
....+++|+|||||.+|...+.+++..+|++|||||+.+| ..+|+.+++.++. ....++||+|..+
T Consensus 49 ----~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg-~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 49 ----PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG-VMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp ----SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC-CCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred ----CCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC-ccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 0115799999999999999999999999999999999999 9999999776642 2346799999864
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=1.1e-17 Score=152.37 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++||+|||||||+++|++.... ....+|+|...+...+..... ....+.. ..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~---~~e~ggiT~~ig~~~~~~~~~----------~~~~~~~--------~~~ 62 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA---SREAGGITQHIGATEIPMDVI----------EGICGDF--------LKK 62 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS---CC----CCCBTTEEEEEHHHH----------HHHSCGG--------GGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc---cccCCceecccCeEEEeechh----------hhhcccc--------ccc
Confidence 4568999999999999999999853211 111135555443321100000 0000000 000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
. ........++|+|||||.+|...+.++++.+|++|+|+|+.+| +++||.+++.++ ++...++||+|...
T Consensus 63 ~-~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-v~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 63 F-SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-FKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp C-GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-CCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred c-ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-ccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 0 0000113699999999999999888899999999999999999 999999977654 23357799999863
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.64 E-value=2.7e-17 Score=151.92 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=79.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHh---cCC------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS---GVQ------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~---g~~------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
...++|+|+||+|+|||||+++|+ +.. .+....|+++++|+......+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~---------------- 71 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA---------------- 71 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE----------------
Confidence 456899999999999999999998 321 2334455667777665443211
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HH
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----IL 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il 155 (182)
+.+ .+++++|||||.+|...+.+++..+|++|+|||+.+| +..++.+.+..+ +.
T Consensus 72 -------------~~~--------~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g-~~~~~~~~~~~~~~~~~p 129 (693)
T 2xex_A 72 -------------WEG--------HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-VEPQTETVWRQATTYGVP 129 (693)
T ss_dssp -------------ETT--------EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHHHTTCC
T ss_pred -------------ECC--------eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC-CcHHHHHHHHHHHHcCCC
Confidence 112 7899999999999999999999999999999999998 888887755432 22
Q ss_pred HHhHhccchhhh
Q psy1174 156 MATMLNGAAVMD 167 (182)
Q Consensus 156 ~~~~~nk~d~~~ 167 (182)
...++||+|...
T Consensus 130 ~ilviNK~Dl~~ 141 (693)
T 2xex_A 130 RIVFVNKMDKLG 141 (693)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 346799999764
No 31
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.56 E-value=2e-15 Score=138.85 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=85.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC---------------ccchhhHhhhceeeeeccccceeeecCCCCCCCCcccc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYI 79 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~---------------~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (182)
.+.++|+|+||+|+|||||+++|++.. .+....|.++++++......+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~---------------- 70 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL---------------- 70 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE----------------
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe----------------
Confidence 346789999999999999999998211 2234455666766544332110
Q ss_pred cCCCCCCCCCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhH----H
Q psy1174 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDI----L 155 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~i----l 155 (182)
+. ...++++|||||.+|...+.++++.+|++++|+|+.+| +..|+++++.++. .
T Consensus 71 -------------~~--------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-~~~qt~~~~~~~~~~~ip 128 (665)
T 2dy1_A 71 -------------FR--------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-VQVGTERAWTVAERLGLP 128 (665)
T ss_dssp -------------ET--------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHTTCC
T ss_pred -------------eC--------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-cchhHHHHHHHHHHccCC
Confidence 11 27899999999999999999999999999999999999 8999988665432 2
Q ss_pred HHhHhccchhh
Q psy1174 156 MATMLNGAAVM 166 (182)
Q Consensus 156 ~~~~~nk~d~~ 166 (182)
...++||+|..
T Consensus 129 ~ilv~NKiD~~ 139 (665)
T 2dy1_A 129 RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECGGGC
T ss_pred EEEEecCCchh
Confidence 34669999974
No 32
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.47 E-value=1.9e-14 Score=120.69 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=71.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
...|+++|++|+|||||+++|++...... ....+.|..... .+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv--s~~~~tTr~~i~---~i-------------------------------- 49 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLR---GI-------------------------------- 49 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEE---EE--------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee--cCCCCceeEEEE---EE--------------------------------
Confidence 35699999999999999999997421100 000011100000 00
Q ss_pred CCcccccceEEEeeCCChhH--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchh------hHHHHhHhcc
Q psy1174 97 TGRFQLVRHVSFVDCPGHDI--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH------DILMATMLNG 162 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~------~il~~~~~nk 162 (182)
......++.|+||||+.+ |......++..+|++++|+|+.++ .....+..+.. ......++||
T Consensus 50 --~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~-~~~~~~~i~~~l~~~~~~~p~ilV~NK 126 (301)
T 1wf3_A 50 --LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP-PTPEDELVARALKPLVGKVPILLVGNK 126 (301)
T ss_dssp --EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC-CCHHHHHHHHHHGGGTTTSCEEEEEEC
T ss_pred --EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC-CChHHHHHHHHHHhhcCCCCEEEEEEC
Confidence 001127899999999865 677777888999999999999987 55444332211 2334567999
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|+..
T Consensus 127 ~Dl~~ 131 (301)
T 1wf3_A 127 LDAAK 131 (301)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99874
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.45 E-value=5.4e-15 Score=111.78 Aligned_cols=111 Identities=24% Similarity=0.423 Sum_probs=73.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|.+.... .....+++...... ...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~--- 51 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT---EQEAGGITQHIGAY-----------------------------QVT--- 51 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS---CSSCCSSSTTCCCC-----------------------------EEE---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc---cCCCCceeEeeeEE-----------------------------EEE---
Confidence 4578999999999999999999863211 00001111111110 000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~d~~~ 167 (182)
..+..+.++||||+.+|.......+..+|++++|+|+.++ ...+..+.+.+. +....++||+|+.+
T Consensus 52 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 52 -----VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-VMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp -----ETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-CCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred -----eCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 1126789999999999887777778999999999999987 555555433321 23446699999864
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.44 E-value=3.9e-14 Score=118.82 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=70.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.-.|+++|++|+|||||+++|++..... .+...+.|...... +
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~---~------------------------------- 52 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLG---V------------------------------- 52 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEE---E-------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEE---E-------------------------------
Confidence 44579999999999999999999743110 00011111110000 0
Q ss_pred CCCcccc-cceEEEeeCCChh----------HHHHHHHhccccCCeEEEEEEcCCCccccccccc-chh----hHHHHhH
Q psy1174 96 CTGRFQL-VRHVSFVDCPGHD----------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDC-PGH----DILMATM 159 (182)
Q Consensus 96 ~~~~~~~-~~~i~lIDtPGh~----------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~-l~~----~il~~~~ 159 (182)
.... ..++.|+||||+. .|...+..++..+|++++|+|+.++ ...+..+. +.. .+....+
T Consensus 53 ---~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvilV 128 (308)
T 3iev_A 53 ---KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIVV 128 (308)
T ss_dssp ---EEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEEE
T ss_pred ---EecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEEE
Confidence 0011 3789999999983 3556677888999999999999987 55444442 211 1334466
Q ss_pred hccchhh
Q psy1174 160 LNGAAVM 166 (182)
Q Consensus 160 ~nk~d~~ 166 (182)
+||+|+.
T Consensus 129 ~NK~Dl~ 135 (308)
T 3iev_A 129 INKIDKI 135 (308)
T ss_dssp EECGGGS
T ss_pred EECccCC
Confidence 9999987
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.41 E-value=4.9e-14 Score=110.83 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=69.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
....++|+++|++|+|||||+++|++..... ......+.|....+. ... .
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~-----~~~-----------------------~- 75 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-FASKTPGRTQHINYF-----SVG-----------------------P- 75 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-CTTCCCCSCCCEEEE-----EES-----------------------C-
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-eecCCCCcccceEEE-----Eec-----------------------C-
Confidence 3456789999999999999999998743100 001112222222110 000 0
Q ss_pred CCCCCcccccceEEEeeCCCh----------h---HHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHH
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGH----------D---ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILM 156 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh----------~---~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~ 156 (182)
.....+.++||||+ . .+..........+|++++|+|+.++ ......+.+.. .+..
T Consensus 76 -------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~l~~~~~p~ 147 (223)
T 4dhe_A 76 -------AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP-LTELDRRMIEWFAPTGKPI 147 (223)
T ss_dssp -------TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHGGGCCCE
T ss_pred -------CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCCE
Confidence 01267999999995 2 2333445556668999999999987 55444332221 1233
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
+.++||+|+.+
T Consensus 148 i~v~nK~Dl~~ 158 (223)
T 4dhe_A 148 HSLLTKCDKLT 158 (223)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEeccccCC
Confidence 46699999875
No 36
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.39 E-value=6.9e-14 Score=117.04 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=67.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
...|+++|++|+|||||+++|++... ++..... .+++...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~-----------~i~s~~~-----------------------------~tTr~~~ 47 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI-----------SITSRKA-----------------------------QTTRHRI 47 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE-----------EECCCCS-----------------------------SCCSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-----------cccCCCC-----------------------------CcceeeE
Confidence 45799999999999999999997421 1100000 0000000
Q ss_pred CC-cccccceEEEeeCCChh-H--------HHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhcc
Q psy1174 97 TG-RFQLVRHVSFVDCPGHD-I--------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNG 162 (182)
Q Consensus 97 ~~-~~~~~~~i~lIDtPGh~-~--------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk 162 (182)
.. ......+++++||||+. . |......++..+|++++|+|+.. +..+++.++.+. .+...++||
T Consensus 48 ~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvlNK 125 (301)
T 1ega_A 48 VGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAVNK 125 (301)
T ss_dssp EEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEEES
T ss_pred EEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEEEC
Confidence 00 00122789999999997 3 22233566789999999999975 455555433322 234466899
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|...
T Consensus 126 ~D~~~ 130 (301)
T 1ega_A 126 VDNVQ 130 (301)
T ss_dssp TTTCC
T ss_pred cccCc
Confidence 99875
No 37
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=2.1e-13 Score=101.79 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=68.4
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++...... ...++...+. ..+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~t~~~~~~--~~~~~----------------------------- 46 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-----YIPTVEDTYR--QVISC----------------------------- 46 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-----CCCCSCEEEE--EEEEE-----------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCCccccEE--EEEEE-----------------------------
Confidence 46799999999999999999986321100 0001000000 00000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh---------hHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH---------DILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~---------~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++++|+|+.+..........+.. .+....++||+|+.+
T Consensus 47 ---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 47 ---DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp ---TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred ---CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 01125789999999999888777888999999999999875211111111110 123346699999764
No 38
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=107.60 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=66.2
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
....++|+++|++|+|||||+++|++...... .....++|....... ..+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~-----------------------------~~~ 75 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-GTAAKSITKKCEKRS-----------------------------SSW 75 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEE-----------------------------EEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-CCCCCceeeeEEEEE-----------------------------EEe
Confidence 34567899999999999999999997532100 000012222111100 001
Q ss_pred CCCCCcccccceEEEeeCCCh-----------hHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh---------
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGH-----------DILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD--------- 153 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh-----------~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~--------- 153 (182)
. ...+.++||||. ..+...+......+|++|+|+|+... .....+.+...
T Consensus 76 ~--------~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~--~~~~~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 76 K--------ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY--TEEEHKATEKILKMFGERAR 145 (239)
T ss_dssp T--------TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC--SSHHHHHHHHHHHHHHHHHG
T ss_pred C--------CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC--CHHHHHHHHHHHHHhhhhcc
Confidence 1 268999999994 34555555666778999999999743 23323222111
Q ss_pred HHHHhHhccchhhh
Q psy1174 154 ILMATMLNGAAVMD 167 (182)
Q Consensus 154 il~~~~~nk~d~~~ 167 (182)
...+.++||+|..+
T Consensus 146 ~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 146 SFMILIFTRKDDLG 159 (239)
T ss_dssp GGEEEEEECGGGC-
T ss_pred ceEEEEEeCCccCC
Confidence 12445689999764
No 39
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.38 E-value=1.2e-13 Score=102.58 Aligned_cols=113 Identities=10% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|.+....... ...+.... ..... . .
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~-~~~~~---~--------------------------~- 47 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKY---DPTIEDFY-RKEIE---V--------------------------D- 47 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCC---CTTCCEEE-EEEEE---E--------------------------T-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccC---CCCcceeE-EEEEE---E--------------------------C-
Confidence 4578999999999999999999853211000 00000000 00000 0 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++++|+|+.+.. ......+.+.+ ......++||+|+.+
T Consensus 48 -----~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 48 -----SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp -----TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred -----CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 11256899999999999887778889999999999999751 11111111111 123345699999764
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.38 E-value=1.1e-13 Score=121.06 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... ..+...|+|.+.....+ .+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~d~~~~~~-----------------------------~~~- 221 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTSF-----------------------------TYN- 221 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE--EEC---------CCEEE-----------------------------EET-
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce--eecCCCCceeeeeEEEE-----------------------------EEC-
Confidence 4578999999999999999999975321 01112344443322111 011
Q ss_pred CCCcccccceEEEeeCCCh----------hHHHHH-HHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGH----------DILMAT-MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh----------~~f~~~-~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~ 160 (182)
+..+.++||||+ +.|... ...++..+|++|+|+|+.++ ...|..+.+.++ ...+..+
T Consensus 222 -------~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~-~s~~~~~~~~~~~~~~~~iiiv~ 293 (436)
T 2hjg_A 222 -------QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-IIEQDKRIAGYAHEAGKAVVIVV 293 (436)
T ss_dssp -------TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTTCEEEEEE
T ss_pred -------CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcC-CcHHHHHHHHHHHHcCCcEEEEE
Confidence 267999999999 556543 34577899999999999998 666665533322 2234568
Q ss_pred ccchhhh
Q psy1174 161 NGAAVMD 167 (182)
Q Consensus 161 nk~d~~~ 167 (182)
||+|+.+
T Consensus 294 NK~Dl~~ 300 (436)
T 2hjg_A 294 NKWDAVD 300 (436)
T ss_dssp ECGGGSC
T ss_pred ECccCCC
Confidence 9999864
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=105.32 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=68.8
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
+..+...+|+++|++|+|||||+++|++...... .....+.+.... .+.+
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~--~~~~--------------------------- 72 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN-ISATLGVDFQMK--TLIV--------------------------- 72 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEE--EEEE---------------------------
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCCccceeEEE--EEEE---------------------------
Confidence 4455678999999999999999999985431100 000011111000 0000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch-------hhHHHHhHhccc
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG-------HDILMATMLNGA 163 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~-------~~il~~~~~nk~ 163 (182)
. .....+.++||||+.+|.......+..+|++|+|+|+.++ ...+. .+.+. ..+....++||+
T Consensus 73 --~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 143 (199)
T 2p5s_A 73 --D------GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE-KSFLNIREWVDMIEDAAHETVPIMLVGNKA 143 (199)
T ss_dssp --T------TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHC---CCEEEEEECG
T ss_pred --C------CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 0 1125799999999999998888888999999999999875 21111 11111 112334668999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+.+
T Consensus 144 Dl~~ 147 (199)
T 2p5s_A 144 DIRD 147 (199)
T ss_dssp GGHH
T ss_pred cccc
Confidence 9864
No 42
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.37 E-value=5.9e-13 Score=107.90 Aligned_cols=113 Identities=14% Similarity=0.028 Sum_probs=66.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|++........ ...++|...... .+.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-~~~~~t~~~~~~-----------------------------~~~~~ 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL-GSQTLTKTCSKS-----------------------------QGSWG 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-TSCCCCCSCEEE-----------------------------EEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceeeeeEEE-----------------------------EEEeC
Confidence 356789999999999999999999643110000 000011111000 01112
Q ss_pred CCCCcccccceEEEeeCCChhHH-----------HHHHHhccccCCeEEEEEEcCCCcccccccccchh---------hH
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDIL-----------MATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH---------DI 154 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f-----------~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~---------~i 154 (182)
+++++++||||+.++ ...+..++..+|++|+|+|+.. +..+....+.. ..
T Consensus 70 --------~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~ 139 (260)
T 2xtp_A 70 --------NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMG 139 (260)
T ss_dssp --------TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGG
T ss_pred --------CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhc
Confidence 278999999998654 3333446688999999999984 33333322211 12
Q ss_pred HHHhHhc-cchhhh
Q psy1174 155 LMATMLN-GAAVMD 167 (182)
Q Consensus 155 l~~~~~n-k~d~~~ 167 (182)
....++| |+|+.+
T Consensus 140 ~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 140 HTIVLFTHKEDLNG 153 (260)
T ss_dssp GEEEEEECGGGGTT
T ss_pred cEEEEEEcccccCC
Confidence 2334566 999864
No 43
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.37 E-value=3.5e-13 Score=103.51 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=66.4
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
+.....++|+++|++|+|||||+++|++..... ......+.|....+ +.
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~t~~~~~-----~~------------------------- 66 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLNF-----YI------------------------- 66 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEE-----EE-------------------------
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-ccCCCCCceeeEEE-----EE-------------------------
Confidence 444556889999999999999999998642100 00111122221111 00
Q ss_pred cCCCCCCcccccceEEEeeCCC----------hhHHHHHHHhcc---ccCCeEEEEEEcCCCcccccccccchh----hH
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPG----------HDILMATMLNGA---AVMDAALLLIGCDNAAKTPEIVDCPGH----DI 154 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPG----------h~~f~~~~~~~~---~~aD~ailVVda~~g~~~~qt~e~l~~----~i 154 (182)
...++.++|||| +..|...+...+ ..+|++++|+|+..+ ......+.+.. ..
T Consensus 67 ----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~ 135 (195)
T 1svi_A 67 ----------INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA-PSNDDVQMYEFLKYYGI 135 (195)
T ss_dssp ----------ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTC
T ss_pred ----------ECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHcCC
Confidence 014689999999 666655444444 444999999999987 44333322211 12
Q ss_pred HHHhHhccchhhh
Q psy1174 155 LMATMLNGAAVMD 167 (182)
Q Consensus 155 l~~~~~nk~d~~~ 167 (182)
....++||+|+.+
T Consensus 136 p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 136 PVIVIATKADKIP 148 (195)
T ss_dssp CEEEEEECGGGSC
T ss_pred CEEEEEECcccCC
Confidence 2346699999865
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.37 E-value=1.8e-13 Score=104.60 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=33.7
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||+..|.......+..+|++|+|+|+.++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999888778888999999999999976
No 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.37 E-value=2.1e-13 Score=101.31 Aligned_cols=114 Identities=14% Similarity=-0.007 Sum_probs=66.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|++|+|||||+++|.+...... ...+....+.. . +..
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t~~~~~~~-~-~~~--------------------------- 47 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPTKADSYRK-K-VVL--------------------------- 47 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CCTTCCEEEEE-E-EEE---------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCC-----CCCCcceEEEE-E-EEE---------------------------
Confidence 3467899999999999999999985321100 00000000000 0 000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cchh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~~----~il~~~~~nk~d~~ 166 (182)
......+.++||||+.+|.......+..+|++++|+|+.+..-.....+ ...+ .+....++||+|+.
T Consensus 48 -----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 48 -----DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp -----TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred -----CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 0112578999999999998888888899999999999997410011111 1111 12334669999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 123 ~ 123 (168)
T 1u8z_A 123 D 123 (168)
T ss_dssp G
T ss_pred c
Confidence 5
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.36 E-value=9.8e-14 Score=106.76 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=58.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.....+|+++|+.|+|||||+++|++...... ...-|+..... .+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----~~~~t~~~~~~--~~----------------------------- 58 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----HITATVGYNVE--TF----------------------------- 58 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------CCCCCSSEEEE--EE-----------------------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----ccccccceeEE--EE-----------------------------
Confidence 44567899999999999999999986432100 00011111100 00
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|...+...+..+|++|+|+|+.++
T Consensus 59 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 59 ------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp ------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred ------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence 01127899999999999988777788999999999999976
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.36 E-value=9.9e-14 Score=104.49 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=69.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|+.|+|||||+++|++.... ......++.+.....+.+ .
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~ 59 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTMYL-----------------------------E 59 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEEE-----------------------------T
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeEEEEEEEEE-----------------------------C
Confidence 44578999999999999999999853211 000111111111110000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|...+...+..+|++++|+|+.+..-.....+.+.. .+....++||+|+.+
T Consensus 60 ------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 60 ------DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp ------TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred ------CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 0115789999999999888777778899999999999875111111111111 122345699999864
No 48
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=1.7e-13 Score=120.58 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=69.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
++..++|+++|++|+|||||+++|++.... ..+...|.|.+..+.. ..+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~~-----------------------------~~~ 68 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSS-----------------------------AEW 68 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEE-----------------------------CTT
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEEE-----------------------------EEE
Confidence 355678999999999999999999863211 1112234444332211 111
Q ss_pred CCCCCcccccceEEEeeCCC--------hhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhc
Q psy1174 94 SSCTGRFQLVRHVSFVDCPG--------HDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLN 161 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPG--------h~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~n 161 (182)
.+ ..+.++|||| +..+......++..+|++|+|+|+..+ +.....+..... .....++|
T Consensus 69 ~~--------~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~-~~~~d~~l~~~l~~~~~pvilV~N 139 (456)
T 4dcu_A 69 LN--------YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG-VTAADEEVAKILYRTKKPVVLAVN 139 (456)
T ss_dssp CS--------SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC-SCHHHHHHHHHHTTCCSCEEEEEE
T ss_pred CC--------ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC-CChHHHHHHHHHHHcCCCEEEEEE
Confidence 22 6799999999 778888888889999999999999988 666555432211 22335689
Q ss_pred cchhhh
Q psy1174 162 GAAVMD 167 (182)
Q Consensus 162 k~d~~~ 167 (182)
|+|..+
T Consensus 140 K~D~~~ 145 (456)
T 4dcu_A 140 KLDNTE 145 (456)
T ss_dssp CC----
T ss_pred Cccchh
Confidence 999765
No 49
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.36 E-value=5e-13 Score=99.10 Aligned_cols=111 Identities=10% Similarity=-0.020 Sum_probs=67.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|+.|+|||||+++|.+.... ..+...+.+........ .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~----- 45 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA--VVADVPGVTRDLKEGVV-----------------------------E----- 45 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEE-----------------------------E-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee--eccCCCCceecceEEEE-----------------------------E-----
Confidence 57999999999999999999864311 01111122221111000 0
Q ss_pred CcccccceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCCCcccccccccch----hhHHHHhHhccchhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~----~~il~~~~~nk~d~~ 166 (182)
..+..+.++||||+.. +.......+..+|++++|+|+.++ ......+... ..+....++||+|+.
T Consensus 46 ---~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 46 ---TDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE-LTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp ---ETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC-CCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred ---eCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc-ccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 1125789999999876 555566678999999999999986 4333222111 112234669999987
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
+.
T Consensus 122 ~~ 123 (161)
T 2dyk_A 122 KH 123 (161)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.36 E-value=3.5e-13 Score=101.45 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=69.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.|+|||||+++|.+....... ....+.+..... +..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~-----~~~---------------------------- 59 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRI-----IEV---------------------------- 59 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEE-----EEE----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEE-----EEE----------------------------
Confidence 4578999999999999999999853211000 000011110000 000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch-------hhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++++|+|+.++. ..+. ...+. ..+....++||+|+.+
T Consensus 60 ----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 60 ----SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp ----TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ----CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 011257899999999999888888889999999999998762 1111 11111 1122346689999764
No 51
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.36 E-value=6.8e-14 Score=122.66 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=69.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|++.... ..+...++|.+..+..+.+ .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~--~~~~~~gtT~d~~~~~~~~-----------------------------~ 80 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS--IVSDYAGTTTDPVYKSMEL-----------------------------H 80 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEE-----------------------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC--ccCCCCCeeeeeEEEEEEE-----------------------------C
Confidence 34578999999999999999999864321 1233455555443322211 0
Q ss_pred CCCCcccccceEEEeeCCChhHHH-------HHHHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhHhccc
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILM-------ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATMLNGA 163 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~-------~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~~nk~ 163 (182)
...+++++||||+.+|. ......+..+|++|+|+|+ + ...++.+.+..+ +....++||+
T Consensus 81 -------~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~-~~~~~~~~l~~l~~~~~piIvV~NK~ 150 (423)
T 3qq5_A 81 -------PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--A-PTPYEDDVVNLFKEMEIPFVVVVNKI 150 (423)
T ss_dssp -------TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--S-CCHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred -------CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--C-ChHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 01379999999998663 2345567889999999999 4 555665544321 2334669999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+.+
T Consensus 151 Dl~~ 154 (423)
T 3qq5_A 151 DVLG 154 (423)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9875
No 52
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.35 E-value=3.3e-13 Score=101.04 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=69.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|.+..... ...|+......+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~-------------------------------- 47 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT------TIPTIGFNVETVT-------------------------------- 47 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSSEEEEEEE--------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC------cCCcCccceEEEE--------------------------------
Confidence 35789999999999999999998532110 0011111110000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cch----hhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~----~~il~~~~~nk~d~~~ 167 (182)
....++.++||||+.+|.......+..+|++++|+|+.+..-.....+ .+. ..+....++||+|+.+
T Consensus 48 -----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 48 -----YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -----ETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -----ECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 012789999999999988777778899999999999987621111111 111 1123346699999764
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=104.43 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=59.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... .+.....+.......+.+ .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~- 54 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTVEI-----------------------------N- 54 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEEEEEE-----------------------------T-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CccCCCceeEEEEEEEEE-----------------------------C-
Confidence 4578999999999999999999864321 111122222221111110 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++++|+|+.++
T Consensus 55 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (181)
T 3tw8_B 55 -----GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 94 (181)
T ss_dssp -----TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH
T ss_pred -----CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH
Confidence 0125789999999999887777788999999999999975
No 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=2.1e-13 Score=101.69 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=57.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|.+.... .+...............+ .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~-- 48 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA---ENKEPTIGAAFLTQRVTI-----------------------------N-- 48 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCSSEEEEEEEEEE-----------------------------T--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEE-----------------------------C--
Confidence 468999999999999999999853311 000011111110000000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.++||||+..|.......+..+|++++|+|+.+.
T Consensus 49 ----~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 49 ----EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp ----TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ----CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh
Confidence 0125799999999999888777888999999999999875
No 55
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.35 E-value=1.8e-13 Score=105.35 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=70.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++..+|+++|+.|+|||||+++|.+..... ....|+...+..+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~------------------------------- 62 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----DMIPTVGFNMRKI------------------------------- 62 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----SCCCCCSEEEEEE-------------------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----ccCCCCceeEEEE-------------------------------
Confidence 3456789999999999999999998532110 0001111111000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cch----hhHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPG----HDILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~----~~il~~~~~nk~d~ 165 (182)
......+.++||||+.+|...+...+..+|++|+|+|+.+..-.....+ .+. ..+....++||+|+
T Consensus 63 ------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 63 ------TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp ------EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ------EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 0112789999999999998877788899999999999987521111111 111 11234466999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 137 ~~ 138 (188)
T 1zd9_A 137 PG 138 (188)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 56
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.35 E-value=4.1e-13 Score=102.57 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=66.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
....++|+++|+.|+|||||+++|++..... .....+.+.....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~t~~~~~---------------------------------- 63 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF--VSKTPGKTRSINF---------------------------------- 63 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC--CCSSCCCCCCEEE----------------------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc--ccCCCCCccCeEE----------------------------------
Confidence 3445689999999999999999998643110 0000111111100
Q ss_pred CCCCCcccccceEEEeeCCC----------hhHH---HHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHH
Q psy1174 94 SSCTGRFQLVRHVSFVDCPG----------HDIL---MATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILM 156 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPG----------h~~f---~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~ 156 (182)
.....++.++|||| ...| ..........+|++++|+|+..+ ......+.+.. .+..
T Consensus 64 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~p~ 136 (195)
T 3pqc_A 64 ------YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP-PQDSDLMMVEWMKSLNIPF 136 (195)
T ss_dssp ------EEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTCCE
T ss_pred ------EEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC-CCHHHHHHHHHHHHcCCCE
Confidence 01115688999999 4434 34445555667999999999876 44333322211 1233
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
..++||+|+.+
T Consensus 137 i~v~nK~Dl~~ 147 (195)
T 3pqc_A 137 TIVLTKMDKVK 147 (195)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEEChhcCC
Confidence 46689999863
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.35 E-value=9.7e-14 Score=114.53 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|+|... ......|+|+......+. ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~---~v~~~~g~t~~~~~~~~~-----------------------------~~- 48 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ---RVGNWAGVTVERKEGQFS-----------------------------TT- 48 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE---EEEECTTSSSEEEEEEEE-----------------------------CS-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeeEEEEEEEEE-----------------------------eC-
Confidence 357899999999999999999997431 111112333332221110 01
Q ss_pred CCCcccccceEEEeeCCChhHHHH---------H---HHhccccCCeEEEEEEcCCCcccc-cccccchhhHHHHhHhcc
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA---------T---MLNGAAVMDAALLLIGCDNAAKTP-EIVDCPGHDILMATMLNG 162 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~---------~---~~~~~~~aD~ailVVda~~g~~~~-qt~e~l~~~il~~~~~nk 162 (182)
...+.++||||+.+|.. . .......+|++|+|+|+....... .+.+.....+.....+||
T Consensus 49 -------~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK 121 (274)
T 3i8s_A 49 -------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNM 121 (274)
T ss_dssp -------SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred -------CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEEC
Confidence 26799999999876541 1 112236899999999998631000 011111123344566999
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|+.+
T Consensus 122 ~Dl~~ 126 (274)
T 3i8s_A 122 LDIAE 126 (274)
T ss_dssp HHHHH
T ss_pred ccchh
Confidence 99865
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=2.3e-13 Score=118.99 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=64.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|++|+|||||+++|++.... ..+...|.|.+..+.. ..+.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~-----------------------------~~~~~-- 50 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSS-----------------------------AEWLN-- 50 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEE-----------------------------CTTCS--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEE-----------------------------EEECC--
Confidence 57999999999999999999864221 1122344444433311 11222
Q ss_pred CcccccceEEEeeCCChh--------HHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchh
Q psy1174 98 GRFQLVRHVSFVDCPGHD--------ILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAV 165 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~--------~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~ 165 (182)
..+.++||||+. .+......++..||++|+|+|+..| ......++... ......++||+|.
T Consensus 51 ------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~-~~~~d~~~~~~l~~~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 51 ------YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG-VTAADEEVAKILYRTKKPVVLAVNKLDN 123 (436)
T ss_dssp ------SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHTTCCSCEEEEEECCCC
T ss_pred ------ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 679999999985 5666777788999999999999998 55544332211 1223456899997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
..
T Consensus 124 ~~ 125 (436)
T 2hjg_A 124 TE 125 (436)
T ss_dssp --
T ss_pred cc
Confidence 65
No 59
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.34 E-value=4.1e-13 Score=102.52 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=70.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|++|+|||||+++|.+..... ...|+......+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~------------------------------- 58 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDT------ISPTLGFNIKTLE------------------------------- 58 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSS------CCCCSSEEEEEEE-------------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCc------ccccCccceEEEE-------------------------------
Confidence 566889999999999999999998643110 0001111000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccchh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~~----~il~~~~~nk~d~~ 166 (182)
....++.++||||+.+|...+...+..+|++++|+|+.+..-.... .+.+.+ ......++||+|+.
T Consensus 59 ------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 59 ------HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp ------ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ------ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 0127899999999999988777788999999999999875211111 111111 12344669999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 133 ~ 133 (186)
T 1ksh_A 133 G 133 (186)
T ss_dssp T
T ss_pred C
Confidence 4
No 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.34 E-value=1.5e-13 Score=112.63 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.++|+++|++|+|||||+++|+|... ......++|+......+ .+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~---~~~~~~~~t~~~~~~~~-----------------------------~~~- 48 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ---HVGNWPGVTVEKKEGIM-----------------------------EYR- 48 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE---EEEECTTSSCEEEEEEE-----------------------------EET-
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeEEEeeEEEE-----------------------------EEC-
Confidence 467899999999999999999997432 11111233332221110 011
Q ss_pred CCCcccccceEEEeeCCChhHHHH--------HHHhccccCCeEEEEEEcCCCcc-cccccccchhh-HHHHhHhccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA--------TMLNGAAVMDAALLLIGCDNAAK-TPEIVDCPGHD-ILMATMLNGAAV 165 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~--------~~~~~~~~aD~ailVVda~~g~~-~~qt~e~l~~~-il~~~~~nk~d~ 165 (182)
+..+.++||||+.+|.. ........+|++++|+|+..+.. ...+.+..... +....++||+|+
T Consensus 49 -------~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 49 -------EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp -------TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred -------CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhc
Confidence 26799999999876533 12222357999999999987520 00111111122 344566899997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 122 ~~ 123 (271)
T 3k53_A 122 LK 123 (271)
T ss_dssp HH
T ss_pred Cc
Confidence 65
No 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.34 E-value=1.4e-13 Score=104.23 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=69.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|++..... +....+........+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~------------------------------ 56 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE---FQESTIGAAFFSQTLAV------------------------------ 56 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT---TSCCCSCCSEEEEEEEE------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC---cCCCCceeEEEEEEEEE------------------------------
Confidence 345789999999999999999998532210 00011111110000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....++.++||||+.+|.......+..+|++|+|+|+.+..-.....+.+.. .+....++||+|+.+
T Consensus 57 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 57 -----NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp -----TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred -----CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 01126799999999999888777778899999999999875111111111111 112335689999754
No 62
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.34 E-value=4.2e-13 Score=99.97 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=44.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----h----hhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----G----HDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~----~~il~~~~~nk~d~~~ 167 (182)
..+.++||||+.+|.......+..+|++++|+|+.+..-.....+.+ . .......+.||+|+.+
T Consensus 44 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 67999999999999887777889999999999998752011111111 1 0123346699999864
No 63
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.33 E-value=1.3e-13 Score=102.85 Aligned_cols=87 Identities=16% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|++...... .+...+.+..... ..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~--~~~------------------------------- 50 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF-QESTIGAAFLTQT--VCL------------------------------- 50 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEE--EEE-------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEE--EEE-------------------------------
Confidence 457899999999999999999985321100 0000111111100 000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 51 ----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 51 ----DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp ----TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ----CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH
Confidence 01126799999999999988777888999999999999875
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.33 E-value=3.1e-13 Score=102.03 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=59.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|++|+|||||+++|.+.... .+....+..+.....+.+ .
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~ 51 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG---KQYKQTIGLDFFLRRITL-----------------------------P 51 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT---HHHHHTTTSSEEEEEEEE-----------------------------T
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC---CCCCCceeEEEEEEEEEe-----------------------------C
Confidence 44578999999999999999999864321 111111111111100000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
+ .....+.++||||+..|.......+..+|++++|+|+.++
T Consensus 52 ~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 52 G-----NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNY 92 (178)
T ss_dssp T-----TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCH
T ss_pred C-----CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCH
Confidence 0 0126799999999998877777778999999999999875
No 65
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.33 E-value=8.9e-13 Score=107.09 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=67.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
..+.++|+++|++|+|||||+++|++....... ....+.|....... ..+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-~~~~~~T~~~~~~~-----------------------------~~~ 67 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR-LGATSVTRACTTGS-----------------------------RRW 67 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC----------CCSCEEEE-----------------------------EEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc-CCCCCccccEEEEE-----------------------------EEE
Confidence 456689999999999999999999975321000 00011111111100 001
Q ss_pred CCCCCcccccceEEEeeCCCh--------hHHHHHHHhcc----ccCCeEEEEEEcCCCcccccccccchh---------
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGH--------DILMATMLNGA----AVMDAALLLIGCDNAAKTPEIVDCPGH--------- 152 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh--------~~f~~~~~~~~----~~aD~ailVVda~~g~~~~qt~e~l~~--------- 152 (182)
. ...+.++||||. ..+...+..++ ..+|++|+|+|+.. +.......+..
T Consensus 68 ~--------~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~ 137 (247)
T 3lxw_A 68 D--------KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGEDV 137 (247)
T ss_dssp T--------TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGGG
T ss_pred C--------CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChhh
Confidence 1 278999999997 45555555555 89999999999974 33333222211
Q ss_pred -hHHHHhHhccchhhh
Q psy1174 153 -DILMATMLNGAAVMD 167 (182)
Q Consensus 153 -~il~~~~~nk~d~~~ 167 (182)
....+.+.||+|+.+
T Consensus 138 ~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 138 LKWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGGEEEEEECGGGGTT
T ss_pred hccEEEEEEchHhcCC
Confidence 123446689999864
No 66
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.33 E-value=3.5e-13 Score=102.56 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=70.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++.... ......++.......+.+ .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~- 55 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK---DDSNHTIGVEFGSKIINV-----------------------------G- 55 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCSEEEEEEEEEEE-----------------------------T-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCccceEEEEEEEEE-----------------------------C-
Confidence 3578999999999999999999853211 011111111111110000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch-------hhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+.. ..+. ...+. ..+....++||+|+.+
T Consensus 56 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 56 -----GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp -----TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -----CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 01157899999999999998888899999999999998752 1111 11110 1122346689999864
No 67
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.33 E-value=1.9e-13 Score=102.23 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++..... +....+........+. . .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~---~--------------------------~- 51 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND---KHITTLGASFLTKKLN---I--------------------------G- 51 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS---SCCCCCSCEEEEEEEE---S--------------------------S-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc---CCCCccceEEEEEEEE---E--------------------------C-
Confidence 45789999999999999999998532110 0000011111000000 0 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-------hhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++++|+|+.+..-.......+. ..+....++||+|+.+
T Consensus 52 -----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 52 -----GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -----SCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred -----CEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 011578899999999998877777899999999999987521111111111 1122345689999865
No 68
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.32 E-value=2.7e-13 Score=104.11 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=68.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++.++|+++|++|+|||||+++|++..... .....+..+.....+.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~----------------------------- 64 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD---RTEATIGVDFRERAVDI----------------------------- 64 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS---SCCCCCSCCEEEEEEEE-----------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCcceEEEEEEEEE-----------------------------
Confidence 3456899999999999999999998532110 00011111110000000
Q ss_pred CCCCCcccccceEEEeeCCChhHHH-HHHHhccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccch
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILM-ATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGAA 164 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~-~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~d 164 (182)
. ....++.++||||+.+|. ......+..+|++|+|+|+.+.. ......++..+ .+....++||+|
T Consensus 65 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 65 D------GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp T------TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred C------CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0 012579999999999988 55566678999999999998741 11111111111 123345689999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 139 l~~ 141 (189)
T 1z06_A 139 LRS 141 (189)
T ss_dssp CGG
T ss_pred ccc
Confidence 764
No 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.32 E-value=3.3e-13 Score=103.12 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=68.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
..+..+|+++|+.|+|||||+++|.+.... ....|....... .
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~t~~~~~~~-----------------------------~-- 60 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV------HTSPTIGSNVEE-----------------------------I-- 60 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE------EEECCSSSSCEE-----------------------------E--
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC------ccCCcCceeeEE-----------------------------E--
Confidence 345678999999999999999999863210 000000000000 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccc----h----hhHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----G----HDILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~----~~il~~~~~nk~d~ 165 (182)
...+..+.++||||+.+|.......+..+|++++|+|+.+..-.....+.+ . ..+....++||+|+
T Consensus 61 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 ------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp ------EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 011278999999999999877777889999999999999762111111111 1 11223466999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 135 ~~ 136 (181)
T 2h17_A 135 KE 136 (181)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.32 E-value=2.4e-13 Score=102.58 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=49.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|++.... ..... ++...+....+ .. .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~--~~~~~~~~~~~-~~--------------------------~ 53 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS---QQYKA--TIGADFLTKEV-TV--------------------------D 53 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC---TTC-----CCCSCEEEEE-CC--------------------------S
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC---cccCC--ccceEEEEEEE-EE--------------------------c
Confidence 45678999999999999999999853211 00001 11111100000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
+ .....+.++||||+..|.......+..+|++|+|+|+.++
T Consensus 54 ~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (182)
T 1ky3_A 54 G-----DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA 94 (182)
T ss_dssp S-----SCCEEEEEECCC----------CCSTTCCEEEEEEETTCH
T ss_pred C-----CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh
Confidence 0 0115789999999999998888888999999999999875
No 71
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=1.7e-13 Score=103.61 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|++|+|||||+++|.+..... ......++....... +.. .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~t~~~~~~~~~---~~~--------------------------~ 56 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA--GTFISTVGIDFRNKV---LDV--------------------------D 56 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--CCCCCCCSCEEEEEE---EEE--------------------------T
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC--CCcCCceeeEEEEEE---EEE--------------------------C
Confidence 345789999999999999999998532110 000011111110000 000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccch-------hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPG-------HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~-------~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+.+|.......+..+|++++|+|+.++ ...+. .+.+. ..+....++||+|+.
T Consensus 57 ------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 57 ------GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK-ASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp ------TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred ------CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 0125789999999999998888888999999999999875 21111 11111 112334568999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 130 ~ 130 (180)
T 2g6b_A 130 H 130 (180)
T ss_dssp S
T ss_pred c
Confidence 4
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.32 E-value=4.4e-13 Score=102.01 Aligned_cols=123 Identities=12% Similarity=0.000 Sum_probs=71.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|.+..... ....|+...+.....+...+. . .
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~------------------~-----~ 61 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-----KFITTVGIDFREKRVVYRANG------------------P-----D 61 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-----SCCCCCSEEEEEEEEEECTTS------------------C-----C
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-----CcccccceeeeeEEEEEecCC------------------c-----c
Confidence 35789999999999999999998532110 011111111110001111000 0 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh--------hHHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH--------DILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~--------~il~~~~~nk~d~~ 166 (182)
..........+.++||||+..|.......+..+|++|+|+|+.++ ...+. ++.+.. .+....++||+|+.
T Consensus 62 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp CSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 000001126899999999999999888889999999999999875 21111 111111 12234669999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 141 ~ 141 (195)
T 3bc1_A 141 D 141 (195)
T ss_dssp G
T ss_pred c
Confidence 4
No 73
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=100.58 Aligned_cols=113 Identities=9% Similarity=0.064 Sum_probs=68.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.|+|||||+++|.+.... ......++.......+.+ .
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~- 71 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC---EACKSTVGVDFKIKTVEL-----------------------------R- 71 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-----------CCTTEEEEEEEEEE-----------------------------T-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---cCCCCccceeEEEEEEEE-----------------------------C-
Confidence 3468999999999999999999863211 111111111111110000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-cc---ch----hhHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DC---PG----HDILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~---l~----~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.++ ...+.. .. +. ..+....++||+|+.+
T Consensus 72 -----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 -----GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK-ETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp -----TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -----CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0125789999999999998888888999999999999976 221111 11 10 1122345699999864
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.32 E-value=7.7e-13 Score=99.70 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=59.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|++.... .+....+........+.+ .
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~ 52 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKDLEV-----------------------------D 52 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEEEEE-----------------------------T
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEEEEE-----------------------------C
Confidence 34578999999999999999999853211 011111111111100000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++++|+|+.++
T Consensus 53 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (177)
T 1wms_A 53 ------GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS 92 (177)
T ss_dssp ------TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred ------CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 0115799999999999998888888999999999999976
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=1.1e-12 Score=100.86 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=58.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|++...... ...++...+.. .+..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~--~~~~--------------------------- 51 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-----YIPTIEDTYRQ--VISC--------------------------- 51 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT-----TSCCCCEEEEE--EEEE---------------------------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc-----ccCccccceeE--EEEE---------------------------
Confidence 4567899999999999999999985321100 00011110000 0000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 52 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 52 -----DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp -----TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred -----CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH
Confidence 01125789999999999888777788999999999999874
No 76
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.31 E-value=5.1e-13 Score=101.20 Aligned_cols=115 Identities=13% Similarity=-0.013 Sum_probs=69.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++..+|+++|+.|+|||||+++|.+....... .. +....+. ..+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~-t~~~~~~--~~~~~-------------------------- 61 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EP-TKADSYR--KKVVL-------------------------- 61 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CT-TCCEEEE--EEEEE--------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CC-ccceEEE--EEEEE--------------------------
Confidence 345688999999999999999999853211000 00 0000000 00000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccchh----hHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPGH----DILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~~----~il~~~~~nk~d~ 165 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.+..-.... .++..+ .+....++||+|+
T Consensus 62 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 62 D------GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp T------TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred C------CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 0 0115789999999999988888888999999999999874100011 111111 1233466899998
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 136 ~~ 137 (187)
T 2a9k_A 136 ED 137 (187)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 77
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.31 E-value=2.8e-13 Score=100.91 Aligned_cols=113 Identities=14% Similarity=0.006 Sum_probs=68.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|.+..... + ...|....+.. .+.. .
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~---~--~~~t~~~~~~~--~~~~--------------------------~- 47 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE---K--YDPTIEDSYRK--QVEV--------------------------D- 47 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---S--CCCCSEEEEEE--EEES--------------------------S-
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC---C--CCCCccceEEE--EEEE--------------------------C-
Confidence 35689999999999999999998532110 0 00011111100 0000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++++|+|+.+.. ......++..+ .+....++||+|+.+
T Consensus 48 -----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 48 -----CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp -----SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred -----CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 11267899999999988877777788899999999998741 11111111111 122346699999764
No 78
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.31 E-value=8e-13 Score=103.56 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|++..... +...|+...+....+ ..... +...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----~~~~t~~~~~~~~~~-~~~~~-----------~~~~--------- 76 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-----KFITTVGIDFREKRV-VYNAQ-----------GPNG--------- 76 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-----EEEEEEEEEEEEEEE-EEEC-------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-----CCCCceeEEEEEEEE-EECCc-----------cccc---------
Confidence 445789999999999999999998643210 011122221111010 00000 0000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-c----ccch----hhHHHHhHhccchh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-V----DCPG----HDILMATMLNGAAV 165 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~----e~l~----~~il~~~~~nk~d~ 165 (182)
........++.++||||+.+|.......+..+|++|+|+|+.+.. ..+. + ++.. ..+..+.++||+|+
T Consensus 77 --~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 77 --SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp ----CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred --cccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 000011367999999999999988888889999999999998752 1110 1 1111 12334566999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 154 ~~ 155 (217)
T 2f7s_A 154 PD 155 (217)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 79
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.31 E-value=4.6e-13 Score=104.49 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=68.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.|+|||||+++|.+.... .+ ...|+...+....+ .. .
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~--~~~t~~~~~~~~~~-~~--------------------------~- 74 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS---ER--QGSTIGVDFTMKTL-EI--------------------------Q- 74 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC---------------CEEEEEE-EE--------------------------T-
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC---CC--CCCCcceEEEEEEE-EE--------------------------C-
Confidence 4578999999999999999999853321 11 11122111110000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-.....+.+.. .+....+.||+|+.+
T Consensus 75 -----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 -----GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp -----TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred -----CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 0115799999999999998888888999999999999875111111111111 122345689999764
No 80
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=5e-13 Score=104.91 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++.... . ..+.|+...+....+ .. .
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~--~~~~t~~~~~~~~~~-~~--------------------------~- 71 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP---P--GQGATIGVDFMIKTV-EI--------------------------N- 71 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---T--TCCCCCSEEEEEEEE-EE--------------------------T-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC---C--CCCCccceeEEEEEE-EE--------------------------C-
Confidence 4578999999999999999999853211 0 011121111110000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 72 -----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 111 (201)
T 2ew1_A 72 -----GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE 111 (201)
T ss_dssp -----TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred -----CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 0125789999999999998888888999999999999875
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.30 E-value=1.3e-12 Score=114.37 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=67.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.|+++|++|+|||||+++|++.... ..+...|+|.+..+..+. +.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~--~v~~~~g~T~d~~~~~~~-----------------------------~~~-- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVE-----------------------------WYG-- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEE-----------------------------ETT--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--eecCCCCCccceeeEEEE-----------------------------ECC--
Confidence 46899999999999999999974311 112234555444332211 222
Q ss_pred CcccccceEEEeeCCChhH---------HHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccch
Q psy1174 98 GRFQLVRHVSFVDCPGHDI---------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAA 164 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~---------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d 164 (182)
..+.++||||... +......++..||++|+|+|+..| ......+.... ......++||+|
T Consensus 49 ------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~-~~~~d~~i~~~l~~~~~p~ilv~NK~D 121 (439)
T 1mky_A 49 ------KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG-ITKEDESLADFLRKSTVDTILVANKAE 121 (439)
T ss_dssp ------EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC-CCHHHHHHHHHHHHHTCCEEEEEESCC
T ss_pred ------eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6799999999653 455566778999999999999988 54433221111 122345699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
..+
T Consensus 122 ~~~ 124 (439)
T 1mky_A 122 NLR 124 (439)
T ss_dssp SHH
T ss_pred Ccc
Confidence 764
No 82
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.30 E-value=2e-13 Score=105.04 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=69.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|.+....... ....+.+..... ..+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~--~~~------------------------------ 69 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRT--VML------------------------------ 69 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEE--EEE------------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEE--EEE------------------------------
Confidence 34578999999999999999999853211000 000011111000 000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-------hhHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++|+|+|+....-.......+. ..+....++||+|+.+
T Consensus 70 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 70 -----GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp -----TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred -----CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 0112678999999999888777777899999999999987511011111111 1122345689999864
No 83
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.30 E-value=2e-13 Score=104.79 Aligned_cols=114 Identities=8% Similarity=0.035 Sum_probs=70.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... .+.....+.......+.+ .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~- 61 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTIEL-----------------------------D- 61 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCCCSSEEEEEEEEEE-----------------------------T-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCcccceEEEEEEEE-----------------------------C-
Confidence 4568999999999999999999853211 010111122211111110 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++|+|+|+.+..-.....+.+.. .+....++||+|+.+
T Consensus 62 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 -----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp -----TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred -----CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 0115789999999999988888888999999999999975111111111110 122345689999764
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.30 E-value=2.2e-13 Score=106.13 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=67.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|++.... .+....++.......+.+ .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------------------~ 70 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---QDSNHTIGVEFGSRVVNV-----------------------------G 70 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEE-----------------------------T
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCcccceeEEEEEEE-----------------------------C
Confidence 34578999999999999999999853211 111111111111100000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccch-------hhHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPG-------HDILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~-------~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-.......+. ..+....++||+|+.+
T Consensus 71 ------~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 71 ------GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp ------TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred ------CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 011579999999999887766677789999999999987521111111111 1122346689999864
No 85
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.30 E-value=1.7e-13 Score=104.05 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=66.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCc-cchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCccc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQT-VRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCL 92 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~-~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (182)
....++|+++|++|+|||||+++|++... ..... ..+.+. ..... .
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~---~~~~~---~------------------------- 49 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTF---TKLIT---V------------------------- 49 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCT--TCCEEE---EEEEE---E-------------------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--CccccE---EEEEE---E-------------------------
Confidence 34467899999999999999999984221 10000 000010 00000 0
Q ss_pred CCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccch
Q psy1174 93 RSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGAA 164 (182)
Q Consensus 93 ~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~d 164 (182)
. ....++.++||||+.+|.......+..+|++++|+|+.+.. +.....+++.+ .+....++||+|
T Consensus 50 -~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 50 -N------GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp -T------TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred -C------CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0 11257899999999988665566678899999999998741 11111111111 123346689999
Q ss_pred hh
Q psy1174 165 VM 166 (182)
Q Consensus 165 ~~ 166 (182)
+.
T Consensus 123 l~ 124 (181)
T 3t5g_A 123 LH 124 (181)
T ss_dssp CT
T ss_pred ch
Confidence 74
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.30 E-value=1.9e-13 Score=105.00 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=57.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
..+..+|+++|+.|+|||||+++|.+.... . .....|+......+. .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~--~~~~~t~~~~~~~~~-----------------------------~ 64 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQ--S--QNILPTIGFSIEKFK-----------------------------S 64 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGC--C--SSCCCCSSEEEEEEE-----------------------------C
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--C--CCcCCccceeEEEEE-----------------------------E
Confidence 345678999999999999999999864210 0 001111111100000 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
. +..+.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 65 ~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 65 S--------SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103 (190)
T ss_dssp S--------SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH
T ss_pred C--------CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 1 26799999999999888777788999999999999875
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.29 E-value=8.1e-13 Score=100.94 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhH-----hhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNE-----LERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSF 89 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e-----~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (182)
....+|+++|++|+|||||++.|.+......... .+...|+...+....+ .
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~ 67 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDI------------------------G 67 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSC------------------------C
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccc------------------------c
Confidence 4557899999999999999988876432110000 0011122222210000 0
Q ss_pred cccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------------hHHH
Q psy1174 90 PCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------------DILM 156 (182)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------------~il~ 156 (182)
.. .....++.++||||+.+|.......+..+|++|+|+|+.++ ...+..+.+.. .+..
T Consensus 68 ~~--------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~pi 138 (198)
T 3t1o_A 68 EV--------KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDVPI 138 (198)
T ss_dssp CS--------SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSSCE
T ss_pred cc--------cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCCCE
Confidence 00 01126799999999999988888888999999999999965 33332222211 1233
Q ss_pred HhHhccchhhh
Q psy1174 157 ATMLNGAAVMD 167 (182)
Q Consensus 157 ~~~~nk~d~~~ 167 (182)
..+.||+|+.+
T Consensus 139 ilv~NK~Dl~~ 149 (198)
T 3t1o_A 139 VIQVNKRDLPD 149 (198)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEEchhccc
Confidence 45689999754
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.29 E-value=2e-13 Score=105.82 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ .
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~-----------------------------~ 53 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVMV-----------------------------D 53 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS---SCCCCCSEEEEEEEEES-----------------------------S
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCcccceEEEEEEEE-----------------------------C
Confidence 456789999999999999999998543110 00011111111100000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++|+|+|+.++
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (207)
T 1vg8_A 54 ------DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP 93 (207)
T ss_dssp ------SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH
T ss_pred ------CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH
Confidence 0125799999999999887767777899999999999876
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=4.7e-13 Score=102.60 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=66.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+++..+|+++|+.|+|||||+++|.+..... ..-|+...... .
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~-----------------------------~-- 55 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVH------TSPTIGSNVEE-----------------------------I-- 55 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEE------EECCSCSSCEE-----------------------------E--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCc------CcCCCccceEE-----------------------------E--
Confidence 3556889999999999999999998532110 00011000000 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccch----hhHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPG----HDILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~----~~il~~~~~nk~d~ 165 (182)
......+.++||||+.+|.......+..+|++|+|+|+.++.-..... +.+. .......++||+|+
T Consensus 56 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 56 ------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp ------EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred ------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 011278999999999988776667778999999999998762111111 1111 11233466999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 130 ~~ 131 (187)
T 1zj6_A 130 KE 131 (187)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 90
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.29 E-value=4.4e-13 Score=103.23 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=68.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|+.|+|||||+++|.+..... .....++.......+.+ .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~-----------------------------~ 66 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVNI-----------------------------D 66 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC--------CCSSEEEEEEEE-----------------------------T
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC---CCCCcccceeEEEEEEE-----------------------------C
Confidence 345789999999999999999998532210 00011111110000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-.......+.. .+....++||+|+.+
T Consensus 67 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 67 ------GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp ------TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ------CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 0125789999999998877666777899999999999875211111111111 122345689999764
No 91
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.29 E-value=1e-12 Score=102.77 Aligned_cols=114 Identities=14% Similarity=0.001 Sum_probs=68.2
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+++..+|+++|++|+|||||+++|++..... + ....+.........+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~---~-~~~t~~~~~~~~~~~----------------------------- 73 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPG---E-YIPTVFDNYSANVMV----------------------------- 73 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCSEEEEEEEEEC-----------------------------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCC---C-cCCeecceeEEEEEE-----------------------------
Confidence 4566899999999999999999998432110 0 001111110000000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc--ccc---hh---hHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV--DCP---GH---DILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~--e~l---~~---~il~~~~~nk~d~ 165 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.++. ..+.. ..+ .. .+....++||+|+
T Consensus 74 ~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 74 D------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp C-------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred C------CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 0 01256779999999999887777889999999999999762 11111 111 00 1223466899998
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 147 ~~ 148 (204)
T 4gzl_A 147 RD 148 (204)
T ss_dssp HT
T ss_pred cc
Confidence 75
No 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.29 E-value=7.4e-13 Score=102.31 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=69.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++.++|+++|++|+|||||+++|.+...... ...|....+. ..+..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~--~~~~~-------------------------- 57 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPTKADSYR--KKVVL-------------------------- 57 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----CCTTCCEEEE--EEEEE--------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----CCCccceEEE--EEEEE--------------------------
Confidence 45567899999999999999999985321100 0000000000 00000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccchh----hHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPGH----DILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~~----~il~~~~~nk~d~ 165 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.+..-..... +...+ .+..+.++||+|+
T Consensus 58 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 58 D------GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp T------TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred C------CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 0 01157899999999999887778889999999999998741000011 11111 1233466999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 132 ~~ 133 (206)
T 2bov_A 132 ED 133 (206)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 93
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.29 E-value=4.1e-13 Score=110.00 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=64.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
++|+++|++|+|||||+++|+|... ......|+|+......+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~---~v~~~pg~Tv~~~~~~~~---------------------------------- 44 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ---RVGNWPGVTVEKKTGEFL---------------------------------- 44 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE---EEEECTTSSSEEEEEEEE----------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CccCCCCceEEEEEEEEE----------------------------------
Confidence 4799999999999999999997431 011112333322211100
Q ss_pred CcccccceEEEeeCCChhHHHHH---------HH---hccccCCeEEEEEEcCCCcccc-cccccchhhHHHHhHhccch
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMAT---------ML---NGAAVMDAALLLIGCDNAAKTP-EIVDCPGHDILMATMLNGAA 164 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~---------~~---~~~~~aD~ailVVda~~g~~~~-qt~e~l~~~il~~~~~nk~d 164 (182)
..+..+.++||||+.+|... +. .....+|++|+|+|+....... .+.+.....+.....+||+|
T Consensus 45 ---~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~D 121 (256)
T 3iby_A 45 ---LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMD 121 (256)
T ss_dssp ---ETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred ---ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChh
Confidence 11267999999998765431 11 1226799999999998631000 00111112244556699999
Q ss_pred hhhH
Q psy1174 165 VMDA 168 (182)
Q Consensus 165 ~~~~ 168 (182)
+...
T Consensus 122 l~~~ 125 (256)
T 3iby_A 122 IAEH 125 (256)
T ss_dssp HHHH
T ss_pred cCCc
Confidence 8753
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.29 E-value=4.6e-13 Score=117.77 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=72.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|++.... ..+...|+|.+..... ..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~--~~~~~~gtt~~~~~~~-----------------------------~~-- 239 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTS-----------------------------FT-- 239 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE--EECC------CTTSEE-----------------------------EE--
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc--ccCCCCCeEEEEEEEE-----------------------------EE--
Confidence 34578999999999999999999964311 0111122232221110 00
Q ss_pred CCCCcccccceEEEeeCCC----------hhHHHHH-HHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 95 SCTGRFQLVRHVSFVDCPG----------HDILMAT-MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPG----------h~~f~~~-~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
..+.++.++|||| .+.|... ...++..+|++|+|+|+.++ ...+..+++..+ ...+.+
T Consensus 240 ------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-~~~~~~~~~~~~~~~~~~~ilv 312 (456)
T 4dcu_A 240 ------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-IIEQDKRIAGYAHEAGKAVVIV 312 (456)
T ss_dssp ------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTTCEEEEE
T ss_pred ------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-cCHHHHHHHHHHHHcCCCEEEE
Confidence 1126899999999 5667654 34577899999999999998 777766644322 223456
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 313 ~NK~Dl~~ 320 (456)
T 4dcu_A 313 VNKWDAVD 320 (456)
T ss_dssp EECGGGSC
T ss_pred EEChhcCC
Confidence 99999864
No 95
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.29 E-value=8.1e-13 Score=97.70 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=56.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|.+....... .. +....+. ..+.. .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~--~~~~~~~--~~~~~--------------------------~-- 47 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC---DP--TIEDSYR--KQVVI--------------------------D-- 47 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC---CT--TCCEEEE--EEEEE--------------------------T--
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc---CC--ccceEEE--EEEEE--------------------------C--
Confidence 467999999999999999999853211000 00 0000000 00000 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 48 ----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 48 ----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp ----TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred ----CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH
Confidence 1125689999999998887777788899999999999865
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.28 E-value=5.3e-13 Score=103.41 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=65.2
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++..+|+++|++|+|||||+++|.+..... ...|+...... + .
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~------~~~t~~~~~~~--~---------------------------~- 69 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVET--V---------------------------E- 69 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE------EEEETTEEEEE--E---------------------------E-
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc------cCCcCceeEEE--E---------------------------E-
Confidence 3556789999999999999999998532110 00011110000 0 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh--------hHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--------DILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--------~il~~~~~nk~d~ 165 (182)
.....+.++||||+.+|.......+..+|++++|+|+.++.-.....+.+.. .+....++||+|+
T Consensus 70 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 70 -------YKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp -------ETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -------ECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 0126899999999998877667778899999999999875211111111110 1233466899998
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 143 ~~ 144 (192)
T 2b6h_A 143 PN 144 (192)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 97
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=7.9e-13 Score=103.67 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=54.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|.+......... ...++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~--~~~~~~~~------------------------------------ 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS--QEPLSAAD------------------------------------ 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC--SSCEEETT------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee--cCceEEEE------------------------------------
Confidence 4557899999999999999999986321100000 00000000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhcccc----CCeEEEEEEcC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV----MDAALLLIGCD 138 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~----aD~ailVVda~ 138 (182)
.....+.++||||+..|...+...+.. +|++|+|+|+.
T Consensus 52 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 52 ------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp ------GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred ------eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 012678999999999887766666655 89999999998
No 98
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.28 E-value=4.3e-13 Score=102.00 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=48.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|.+.... .+....++.+.....+.+ +
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~---~--------------------------- 53 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIEL---D--------------------------- 53 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEE---T---------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEE---C---------------------------
Confidence 3578999999999999999999853211 111122222221111111 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-.....+.+.. .+....+.||+|+.+
T Consensus 54 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 54 -----GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp -----TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred -----CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 0126799999999999988777778999999999999875111111111111 123346689999753
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.27 E-value=1.8e-12 Score=98.28 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=67.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|.+...... ...|+...+. ..+ .. .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~-----~~~t~~~~~~-~~~-~~--------------------------~- 49 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----YIPTVFDNYS-ANV-MV--------------------------D- 49 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSS-----CCCCSCCEEE-EEE-EE--------------------------T-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCC-----cCCcccceeE-EEE-EE--------------------------C-
Confidence 457899999999999999999984321100 0000000000 000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccc---hh---hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCP---GH---DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l---~~---~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++++|+|+.++.-..... ..+ .. .+....++||+|+.+
T Consensus 50 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 50 -----GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp -----TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred -----CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 11256889999999999877677788999999999998752111111 111 00 122346699999865
No 100
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.27 E-value=1.9e-13 Score=106.32 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=68.8
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
|..++.++|+++|.+|+|||||+++|++...... ...|....+. ..+..
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~--~~~~~------------------------ 67 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----YDPTVENTYS--KIVTL------------------------ 67 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----CCCCSEEEEE--EEEC-------------------------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----CCCccceEEE--EEEEE------------------------
Confidence 4556678999999999999999999985432100 0001111110 00000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccc
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGA 163 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~ 163 (182)
......+.++||||+.+|.......+..+|++++|+|+.+.. ......++..+ .+....++||+
T Consensus 68 --------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 68 --------GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -----------CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred --------CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 011267899999999988877777788999999999998641 11111111111 12344668999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+.+
T Consensus 140 Dl~~ 143 (201)
T 3oes_A 140 DLSP 143 (201)
T ss_dssp TCGG
T ss_pred cCcc
Confidence 9764
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.27 E-value=2.1e-13 Score=104.61 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=68.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|++|+|||||+++|.+...... ..|+...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------~~t~~~~~~~-----------------------------~--- 61 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT------VPTVGVNLET-----------------------------L--- 61 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE------CSSTTCCEEE-----------------------------E---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc------CCCCceEEEE-----------------------------E---
Confidence 5678899999999999999999975321100 0000000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccc----cch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVD----CPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e----~l~----~~il~~~~~nk~d~~ 166 (182)
.....++.++||||+.+|.......+..+|++++|+|+.+..-.....+ .+. .......++||+|+.
T Consensus 62 -----~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 62 -----QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp -----EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred -----EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 0112789999999998887666667789999999999987621111111 111 112344669999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 137 ~ 137 (189)
T 2x77_A 137 D 137 (189)
T ss_dssp T
T ss_pred C
Confidence 4
No 102
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.27 E-value=2.1e-13 Score=101.84 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=56.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++.... ......++.......+. . .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~---~--------------------------~-- 48 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVD---I--------------------------N-- 48 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---C-------CCEEEEEEE---S--------------------------S--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEE---E--------------------------C--
Confidence 468999999999999999999854321 01111111111110000 0 0
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++++|+|+.+.
T Consensus 49 ----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 49 ----GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE 88 (170)
T ss_dssp ----SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH
T ss_pred ----CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH
Confidence 0115789999999998877666777899999999999875
No 103
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.27 E-value=7.2e-13 Score=102.11 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=59.1
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
...+...+|+++|++|+|||||+++|.+..... . ...|+...+.. .+ ..
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~---~--~~~t~~~~~~~-~~-~~------------------------ 66 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT---A--YVPTVFENFSH-VM-KY------------------------ 66 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCS---S--CCCCSEEEEEE-EE-EE------------------------
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCC---c--cCCeeeeeeEE-EE-EE------------------------
Confidence 344556789999999999999999998533110 0 00111111100 00 00
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 67 --~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 107 (194)
T 3reg_A 67 --K------NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107 (194)
T ss_dssp --T------TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred --C------CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH
Confidence 0 0125679999999999988777788999999999999975
No 104
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.26 E-value=5.8e-12 Score=96.50 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|.+..... .....++....+ .
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~--------~~~t~g~~~~~~---------------------------~-- 56 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH--------ITPTQGFNIKSV---------------------------Q-- 56 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE--------EEEETTEEEEEE---------------------------E--
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--------ccCcCCeEEEEE---------------------------E--
Confidence 456789999999999999999998642110 011111100000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~----~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+..|.......+..+|++++|+|+.+..-.... .+.+. ..+....+.||+|+.
T Consensus 57 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 57 ------SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp ------ETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 0126799999999999988878888999999999999875211111 11111 123344669999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 131 ~ 131 (181)
T 1fzq_A 131 T 131 (181)
T ss_dssp T
T ss_pred c
Confidence 4
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.26 E-value=6.4e-13 Score=103.56 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=63.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|++|+|||||+++|.+.... +...|+...... .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~------~~~~t~~~~~~~-----------------------------~--- 64 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG------QHVPTLHPTSEE-----------------------------L--- 64 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------------CCCCCSCEE-----------------------------E---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC------ccCCCCCceeEE-----------------------------E---
Confidence 34568999999999999999999863210 000011110000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc----cccccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP----EIVDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~----qt~e~l~----~~il~~~~~nk~d~~ 166 (182)
...+.++.++||||+..|.......+..+|++++|+|+.+..-.. +..+.+. ..++...+.||+|+.
T Consensus 65 -----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 65 -----TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp -----EETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred -----EECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 011267999999999988776666778999999999998752111 1111111 123344669999975
No 106
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.26 E-value=3.1e-12 Score=97.20 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=57.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|++|+|||||+++|.+..... .... +....+. ..+.. .
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~---~~~~--t~~~~~~--~~~~~--------------------------~ 62 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD---DYDP--TIEDSYL--KHTEI--------------------------D 62 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS---CCCT--TCCEEEE--EEEEE--------------------------T
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---CCCC--CccceeE--EEEEe--------------------------C
Confidence 456789999999999999999998532110 0000 1111000 00000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++++|+|+.++
T Consensus 63 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 63 ------NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp ------TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred ------CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 1114577899999999887777778899999999999975
No 107
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.26 E-value=3.1e-12 Score=95.41 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=58.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|++...... .....+.+..... ..+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~--~~~------------------------------- 50 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN-INPTIGASFMTKT--VQY------------------------------- 50 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEE--EEE-------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEE--EEE-------------------------------
Confidence 357899999999999999999986431100 0000111111100 000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|.......+..+|++++|+|+.++
T Consensus 51 ----~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (170)
T 1z0j_A 51 ----QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE 91 (170)
T ss_dssp ----TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred ----CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH
Confidence 01126789999999999887777778999999999999876
No 108
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.26 E-value=6.4e-13 Score=108.55 Aligned_cols=26 Identities=27% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+..++|+++|++|+|||||+++|++.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999999974
No 109
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.26 E-value=3e-12 Score=96.45 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|+.|+|||||+++|++..... .... |....+. ..+.. .
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~--t~~~~~~--~~~~~--------------------------~- 53 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS---DYDP--TIEDSYT--KICSV--------------------------D- 53 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS---SCCT--TCCEEEE--EEEEE--------------------------T-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc---ccCC--CcCceEE--EEEEE--------------------------C-
Confidence 45789999999999999999998542110 0000 0000000 00000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccchh----hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~~----~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++++|+|+.+..-..... +++.+ .+....++||+|+.+
T Consensus 54 -----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 54 -----GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp -----TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred -----CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 01157899999999988766666778899999999998751101111 11111 122345699999765
No 110
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.26 E-value=1.2e-12 Score=97.50 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|.+..... ....|+...+....+ .. .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~~~~~~~~~-~~--------------------------~- 50 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-----DYKKTIGVDFLERQI-QV--------------------------N- 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-----CSSCCCSSSEEEEEE-EE--------------------------T-
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCceEEEEEEEEE-EE--------------------------C-
Confidence 45789999999999999999998532110 000111111100000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++++|+|+.+..-.......+.. ......++||+|+.+
T Consensus 51 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 51 -----DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp -----TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred -----CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 1125799999999998877666677899999999999875201111111111 122335689999764
No 111
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.25 E-value=3.1e-12 Score=99.06 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=69.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++....... ....+.+..... +.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~--~~~-------------------------------- 52 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKT--IYR-------------------------------- 52 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCC-CCCCSEEEEEEE--EEE--------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCccceeEEEEE--EEE--------------------------------
Confidence 468999999999999999999864321000 000111111100 000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++|+|+|+.++.-.......+.. ......++||+|+.+
T Consensus 53 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 53 ---NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp ---TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred ---CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 01126799999999999998888888999999999999875210111111110 122346689999764
No 112
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=1.9e-12 Score=116.70 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=46.6
Q ss_pred ceEEEeeCCChhH-----------HHHHHHhccccCCeEEEEEEcCCCcccccccccchh----hHHHHhHhccchhhhH
Q psy1174 104 RHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----DILMATMLNGAAVMDA 168 (182)
Q Consensus 104 ~~i~lIDtPGh~~-----------f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----~il~~~~~nk~d~~~~ 168 (182)
.++.||||||+.+ |...+...+..+|++|+|+|+.......+..+++.. ....+.++||+|+.+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 4699999999875 667677778999999999999873144444443322 2334567999998753
No 113
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1.1e-12 Score=101.22 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=69.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|+.|+|||||+++|++..... ......+.+..... + .. .
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~----~-~~------------------------~--- 68 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKT----V-PC------------------------G--- 68 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEE----E-EC------------------------S---
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEE----E-Ee------------------------C---
Confidence 35789999999999999999998543110 00000111111110 0 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-.......+.. .+....++||+|+.+
T Consensus 69 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 69 -----NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp -----SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -----CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 1126799999999999888777788999999999999876211111111111 122335689999864
No 114
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.25 E-value=1.2e-12 Score=97.73 Aligned_cols=84 Identities=14% Similarity=-0.011 Sum_probs=43.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|.+..... .....+.+..... .+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~---~~-------------------------------- 44 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYDRSI---VV-------------------------------- 44 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEE---EE--------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC--CCCccccceEEEE---EE--------------------------------
Confidence 4679999999999999999998643210 0111111211100 00
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+..|.......+..+|++++|+|+.+.
T Consensus 45 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (166)
T 3q72_A 45 ---DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK 85 (166)
T ss_dssp ---TTEEEEEEEEECC---------------CCEEEEEEETTCH
T ss_pred ---CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCH
Confidence 01126788999999999988777778999999999999864
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.25 E-value=7.6e-13 Score=108.40 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=66.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|++.... .....|.|+......+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~---~~~~pg~tv~~~~~~~~-------------------------------- 48 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY---VANWPGVTVEKKEGVFT-------------------------------- 48 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE---EEECTTSCCEEEEEEEE--------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceEEEEEEEEE--------------------------------
Confidence 3468999999999999999999974311 11112333332211100
Q ss_pred CCCcccccceEEEeeCCChhHHHH-----HHHhc---cccCCeEEEEEEcCCCccc-ccccccchhhHHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA-----TMLNG---AAVMDAALLLIGCDNAAKT-PEIVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~-----~~~~~---~~~aD~ailVVda~~g~~~-~qt~e~l~~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+..|.. .+.+. ...+|++++|+|+...... ..+.+.....+..+.++||+|+.
T Consensus 49 -----~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 49 -----YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp -----ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred -----ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 0126899999999865532 11111 1579999999999875210 01111111234455679999986
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
..
T Consensus 124 ~~ 125 (258)
T 3a1s_A 124 KK 125 (258)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 116
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.25 E-value=1.7e-12 Score=98.61 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=53.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|++....... .+.+.........+ .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-----------------------------~- 48 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVI-----------------------------D- 48 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC----CTTCCEEEEEEEEE-----------------------------T-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCchheEEEEEEE-----------------------------C-
Confidence 3568999999999999999999853211000 00000000000000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++++|+|+.+.
T Consensus 49 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 49 -----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 88 (189)
T ss_dssp -----TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH
T ss_pred -----CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 1125688899999999888777778899999999999875
No 117
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=9.1e-13 Score=101.45 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=59.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|+.|+|||||+++|++..... ....+....+....+ .. .
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~-~~------------------------~-- 68 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----AFVSTVGIDFKVKTV-YR------------------------H-- 68 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-----CEEEEETTTEEEEEE-EE------------------------T--
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----ccCCCeeeEEEEEEE-EE------------------------C--
Confidence 455789999999999999999998532110 000111111100000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++|+|+|+.+.
T Consensus 69 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 69 ------EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE 108 (191)
T ss_dssp ------TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH
T ss_pred ------CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH
Confidence 0126799999999999998888889999999999999875
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=5.2e-13 Score=101.33 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=65.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
++..+|+++|++|+|||||+++|.+..... ...|+...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~-----------------------------~--- 57 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT------TKPTIGFNVET-----------------------------L--- 57 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE------ECSSTTCCEEE-----------------------------E---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc------cCCcCccceEE-----------------------------E---
Confidence 567899999999999999999998522100 00000000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc----cccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI----VDCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt----~e~l~----~~il~~~~~nk~d~~ 166 (182)
.....++.++||||+.+|.......+..+|++++|+|+.+..-.... .+.+. .......++||+|+.
T Consensus 58 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 58 -----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp -----EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred -----EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 01126799999999998877777778999999999999875211111 11111 112344669999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 133 ~ 133 (183)
T 1moz_A 133 G 133 (183)
T ss_dssp T
T ss_pred C
Confidence 4
No 119
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.25 E-value=1.7e-12 Score=115.30 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=55.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++.... ......+.|.+.....+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a--~vs~~~gtT~d~~~~~i~--------------------------------- 277 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA--IVSHMPGTTRDYIEECFI--------------------------------- 277 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--------------------CEEEE---------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCceEEEEEEEEE---------------------------------
Confidence 356999999999999999999874210 111123333332211111
Q ss_pred CCcccccceEEEeeCCChhHHHHH--------HHhccccCCeEEEEEEcCCCcccc----cccccchh--hHHHHhHhcc
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMAT--------MLNGAAVMDAALLLIGCDNAAKTP----EIVDCPGH--DILMATMLNG 162 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~--------~~~~~~~aD~ailVVda~~g~~~~----qt~e~l~~--~il~~~~~nk 162 (182)
..+..+.++||||+.++... ....+..+|++|+|+|+..+ ... ...+.+.. ......++||
T Consensus 278 ----~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~s~~~~~~~~~~l~~l~~~piIvV~NK 352 (476)
T 3gee_A 278 ----HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE-RLDDELTEIRELKAAHPAAKFLTVANK 352 (476)
T ss_dssp ----ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTC-SSGGGHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ----ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCC-cchhhhHHHHHHHHhcCCCCEEEEEEC
Confidence 11267999999999776532 23456889999999999987 433 11111111 1233456899
Q ss_pred chhhh
Q psy1174 163 AAVMD 167 (182)
Q Consensus 163 ~d~~~ 167 (182)
+|+..
T Consensus 353 ~Dl~~ 357 (476)
T 3gee_A 353 LDRAA 357 (476)
T ss_dssp TTSCT
T ss_pred cCCCC
Confidence 99865
No 120
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.25 E-value=8.8e-13 Score=101.22 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=68.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++....... ....+.+..... +.+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~--~~~-------------------------------- 66 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKT--VYR-------------------------------- 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEE--EEE--------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEE--EEE--------------------------------
Confidence 468999999999999999999854311000 000111111100 000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++|+|+|+.+..-.....+.+.. .+....++||+|+.+
T Consensus 67 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 67 ---HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp ---TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ---CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 01126799999999998887777788999999999999875211111111111 122346689999764
No 121
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=4.2e-13 Score=104.41 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=57.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|++|+|||||+++|++.... .+....++.......+.+ .
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~ 65 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVDI-----------------------------N 65 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC---CSSSCCCSCCEEEEEEEE-----------------------------T
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEEEEEE-----------------------------C
Confidence 34578999999999999999999853211 000011111111000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++|+|+|+.++
T Consensus 66 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 66 ------GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp ------TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH
T ss_pred ------CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 0115789999999999887667777899999999999875
No 122
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.24 E-value=1.3e-12 Score=101.07 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=67.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
.+..+|+++|++|+|||||+++|.+..... ...|.......+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------~~~t~~~~~~~~-------------------------------- 62 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------LQPTWHPTSEEL-------------------------------- 62 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------CCCCCSCEEEEE--------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------cccCCCCCeEEE--------------------------------
Confidence 345689999999999999999998532110 000111100000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccch----hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPG----HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~----~~il~~~~~nk~d~~ 166 (182)
...+..+.++||||+..|.......+..+|++++|+|+.++.-..... +.+. .......+.||+|+.
T Consensus 63 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 63 -----AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp -----EETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred -----EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 011267999999999998876667778999999999999762111111 1111 112344569999975
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 138 ~ 138 (190)
T 1m2o_B 138 N 138 (190)
T ss_dssp T
T ss_pred C
Confidence 3
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.24 E-value=8.2e-14 Score=108.19 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=56.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|++.... .+.....+.......+.+ .
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~- 78 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTIEL-----------------------------D- 78 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC---CHHHHHHCCSEEEEEEEE-----------------------------T-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCcccceEEEEEEEE-----------------------------C-
Confidence 4578999999999999999999864321 111122222221111110 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+..|.......+..+|++|+|+|+.+.
T Consensus 79 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 79 -----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ 118 (199)
T ss_dssp -----TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS
T ss_pred -----CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH
Confidence 0115789999999998887667778899999999999976
No 124
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.24 E-value=4.4e-13 Score=104.26 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=68.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|++|+|||||+++|.+..... .....++.......+.+ .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~-----------------------------~- 53 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN---DYISTIGVDFKIKTVEL-----------------------------D- 53 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT---TCCCSSCCCEEEEEEEE-----------------------------T-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCcccceeEEEEEEE-----------------------------C-
Confidence 34689999999999999999998532110 00011111111000000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh-------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH-------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~-------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.++ ...+. ...+.. .+....++||+|+.+
T Consensus 54 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 -----GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ-ESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp -----TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred -----CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 0115799999999999887777778999999999999875 21111 111111 122345689999764
No 125
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.24 E-value=1.7e-12 Score=100.23 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|+.|+|||||+++|.+.... +..+ ...|+...+....+ . ..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--~~~t~~~~~~~~~~-~--------------------------~~ 67 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSK-FLKD--YAMTSGVEVVVAPV-T--------------------------IP 67 (208)
T ss_dssp EEEEEEEEC-------------------------------------CEEE-E--------------------------CT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCc-ccCC--CCCccceEEEEEEE-E--------------------------EC
Confidence 44578999999999999999999864100 0000 11111111100000 0 00
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchh----------hHHHHhHhccch
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH----------DILMATMLNGAA 164 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~----------~il~~~~~nk~d 164 (182)
+. .....+.++||||+.+|.......+..+|++|+|+|+.++.-.......+.. .+....++||+|
T Consensus 68 ~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 143 (208)
T 2yc2_C 68 DT----TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD 143 (208)
T ss_dssp TS----SEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-
T ss_pred Cc----ccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcc
Confidence 00 0026799999999999998888888999999999999876211111111111 123346689999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 144 l~~ 146 (208)
T 2yc2_C 144 LPP 146 (208)
T ss_dssp ---
T ss_pred cch
Confidence 765
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.24 E-value=5.5e-13 Score=104.56 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=67.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
+....+|+++|++|+|||||+++|++....... ....+.+... ......
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~----~~~~~~-------------------------- 56 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNY-NATVGAVNHP----VTFLDD-------------------------- 56 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE-ETTTTEEEEE----EEEEBT--------------------------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceeeEE----EEEEeC--------------------------
Confidence 345678999999999999999999853211000 0001111100 000000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccchh-------hHHHHhHhccchh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCPGH-------DILMATMLNGAAV 165 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l~~-------~il~~~~~nk~d~ 165 (182)
. .....+.++||||+.+|.......+..+|++|+|+|+.++ ...+.. +.+.. ......++||+|+
T Consensus 57 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 57 Q------GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR-ITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp T------SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred C------CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 0 0115689999999998876556667889999999999986 221111 11111 1233456899997
Q ss_pred hhH
Q psy1174 166 MDA 168 (182)
Q Consensus 166 ~~~ 168 (182)
.+.
T Consensus 130 ~~~ 132 (218)
T 4djt_A 130 KNR 132 (218)
T ss_dssp C--
T ss_pred ccc
Confidence 653
No 127
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=2.1e-12 Score=100.91 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=68.9
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.+...+|+++|++|+|||||+++|.+.... ..... ++...+.. .+ ..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~~-~~-~~-------------------------- 68 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFP---EVYVP--TVFENYVA-DI-EV-------------------------- 68 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC------------CCEEEE-EE-EE--------------------------
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCC---CcCCC--cccceEEE-EE-EE--------------------------
Confidence 345678999999999999999999864321 00000 11000000 00 00
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccchh------hHHHHhHhccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCPGH------DILMATMLNGAAVM 166 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l~~------~il~~~~~nk~d~~ 166 (182)
. .....+.++||||+.+|.......+..+|++|+|+|+.+.. +.......+.. .+....++||+|+.
T Consensus 69 ~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 69 D------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp T------TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred C------CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 0 01257899999999988876677788999999999998741 11110111111 12334669999987
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 143 ~ 143 (207)
T 2fv8_A 143 S 143 (207)
T ss_dssp G
T ss_pred c
Confidence 5
No 128
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.23 E-value=1.5e-12 Score=101.57 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=69.5
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
|......+|+++|++|+|||||+++|.+..... . ...|+...+. ..+ ..
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~---~--~~~t~~~~~~-~~~-~~------------------------ 52 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPT---D--YIPTVFDNFS-ANV-AV------------------------ 52 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCS---S--CCCSSCCCEE-EEE-EC------------------------
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCc---c--CCCccceeEE-EEE-EE------------------------
Confidence 455667899999999999999999998532110 0 0001100000 000 00
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccch---h---hHHHHhHhccch
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCPG---H---DILMATMLNGAA 164 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l~---~---~il~~~~~nk~d 164 (182)
. .....+.++||||+.+|.......+..+|++|+|+|+.+..-..... ..+. . .+....++||+|
T Consensus 53 --~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 124 (212)
T 2j0v_A 53 --D------GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124 (212)
T ss_dssp --S------SCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred --C------CEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence 0 11257999999999998877777789999999999998751010111 1110 0 123346699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 125 l~~ 127 (212)
T 2j0v_A 125 LRD 127 (212)
T ss_dssp HHT
T ss_pred hhh
Confidence 865
No 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.1e-13 Score=102.54 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=50.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
...++|+++|+.|+|||||+++|.+............+.+. .+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------------------------------------~~- 88 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------------------------------------DY- 88 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------------------CC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------------------------------------ee-
Confidence 34568999999999999999999864321000000000000 00
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhcc----ccCCeEEEEEEcC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGA----AVMDAALLLIGCD 138 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~----~~aD~ailVVda~ 138 (182)
....+.++||||+..|...+...+ ..+|++|+|+|+.
T Consensus 89 -------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 89 -------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp -------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred -------cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 115689999999976643333333 4489999999998
No 130
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.22 E-value=9.7e-12 Score=94.76 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+...|+++|++|+|||||+++|.+..... .....+.+.+.....+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~~~~t~~~~~~~~~-------------------------------- 48 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI--VTDIAGTTRDVLREHIH-------------------------------- 48 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSTTCCCSCEEEEEE--------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce--eeCCCCceeceeeEEEE--------------------------------
Confidence 34679999999999999999998642110 00011111111000000
Q ss_pred CCCcccccceEEEeeCCChhHH----H----HHHHhccccCCeEEEEEEcCCCcccccccccchh-------hHHHHhHh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDIL----M----ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-------DILMATML 160 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f----~----~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-------~il~~~~~ 160 (182)
..+..+.++||||..++ . ......+..+|++++|+|+.+. ...+..+.+.. .++...++
T Consensus 49 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~ 122 (172)
T 2gj8_A 49 -----IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAKLPITVVR 122 (172)
T ss_dssp -----ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTTCCEEEEE
T ss_pred -----ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHhcccCCCEEEEE
Confidence 01256899999998532 1 1223457889999999999876 32222221111 12234568
Q ss_pred ccchhhh
Q psy1174 161 NGAAVMD 167 (182)
Q Consensus 161 nk~d~~~ 167 (182)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (172)
T 2gj8_A 123 NKADITG 129 (172)
T ss_dssp ECHHHHC
T ss_pred ECccCCc
Confidence 9999754
No 131
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.22 E-value=2.9e-12 Score=104.90 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++|+++|++|+|||||+++|++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999964
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.21 E-value=8e-13 Score=104.55 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++++|||||+++|.+..... +... ++...+....+ .. .
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---~~~~--t~~~~~~~~~~-~~--------------------------~ 58 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM---DSKS--TIGVEFATRTL-EI--------------------------E 58 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------CCSEEEEEE-EE--------------------------T
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC---CCCC--cccceeEEEEE-EE--------------------------C
Confidence 345789999999999999999998543210 0001 11111100000 00 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh-------hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH-------DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~-------~il~~~~~nk~d~~ 166 (182)
.....+.++||||+..|.......+..+|++|+|+|+.++. ..+. .+.+.. .+..+.++||+|+.
T Consensus 59 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 59 ------GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS-SYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp ------TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred ------CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 01157899999999998877777789999999999998752 1111 111111 12234568999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 132 ~ 132 (223)
T 3cpj_B 132 H 132 (223)
T ss_dssp G
T ss_pred c
Confidence 4
No 133
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.21 E-value=1.1e-11 Score=102.77 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=42.2
Q ss_pred ceEEEeeCCChhH-------------HHHHHHhccccCCeEEEEEEc-CCCccccccc-ccchh----hHHHHhHhccch
Q psy1174 104 RHVSFVDCPGHDI-------------LMATMLNGAAVMDAALLLIGC-DNAAKTPEIV-DCPGH----DILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------------f~~~~~~~~~~aD~ailVVda-~~g~~~~qt~-e~l~~----~il~~~~~nk~d 164 (182)
.++.|+||||+.+ +.......+..+|++++|+|+ ..+ ...+.. +.+.. ......++||+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~-~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD-LANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC-STTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc-hhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 6799999999753 556667778999999999997 445 443332 22211 122345699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 134
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=101.52 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=71.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.+...+|+++|++|+|||||+++|.+.... .+ ... |+...+. .. ...
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~-~~~-t~~~~~~-~~-------------------------~~~-- 73 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFP---GE-YIP-TVFDNYS-AN-------------------------VMV-- 73 (204)
Confidence 356688999999999999999999843211 00 000 1100000 00 000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-c---cch-h--hHHHHhHhccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-D---CPG-H--DILMATMLNGAAVM 166 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e---~l~-~--~il~~~~~nk~d~~ 166 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.++.-..... . .+. + .+....++||+|+.
T Consensus 74 ~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 74 D------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 0 01156779999999999887777889999999999998752111111 1 111 1 34566789999987
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 148 ~ 148 (204)
T 3th5_A 148 D 148 (204)
Confidence 5
No 135
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.20 E-value=3.5e-12 Score=95.72 Aligned_cols=113 Identities=10% Similarity=-0.015 Sum_probs=59.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++|+|||||+++|.+..... .....|.+..... +.+ .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~--~~~~~~~~~~~~~--~~~-----------------------------~- 48 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD--LHEQLGEDVYERT--LTV-----------------------------D- 48 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEE--EEE-----------------------------T-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc--ccCccccceeEEE--EEE-----------------------------C-
Confidence 45789999999999999999998643110 0000111110000 000 0
Q ss_pred CCCcccccceEEEeeCCChhHH--HHHHHhccccCCeEEEEEEcCCCcccccccccc----h----hhHHHHhHhccchh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDIL--MATMLNGAAVMDAALLLIGCDNAAKTPEIVDCP----G----HDILMATMLNGAAV 165 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f--~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l----~----~~il~~~~~nk~d~ 165 (182)
.....+.++||||+..+ ........+.+|++++|+|+.+..-.....+.+ . ..++...++||+|+
T Consensus 49 -----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl 123 (175)
T 2nzj_A 49 -----GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123 (175)
T ss_dssp -----TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTC
T ss_pred -----CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhh
Confidence 01257899999999874 333334457899999999998641000111111 0 01233466999997
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
.+
T Consensus 124 ~~ 125 (175)
T 2nzj_A 124 AR 125 (175)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.20 E-value=3.7e-12 Score=100.26 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=54.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|+.|+|||||+++|.+.... .. ...|+...+.. . +.. .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~--~~~t~~~~~~~-~-~~~--------------------------~- 78 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP---ES--YTPTVFERYMV-N-LQV--------------------------K- 78 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------CCCCCEEEEE-E-EEE--------------------------T-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC---CC--CCCccceeEEE-E-EEE--------------------------C-
Confidence 4578999999999999999999853210 00 00011110000 0 000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccchh------hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l~~------~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-..... ..+.. .+....++||+|+..
T Consensus 79 -----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 79 -----GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -----TEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred -----CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 01257899999999999887777789999999999998751111111 11100 122345689999875
No 137
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.20 E-value=7.9e-12 Score=96.77 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=56.7
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
...+...+|+++|..|+|||||++.|.+..... ...+...........+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~--------------------------- 63 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN----ETLFLESTNKIYKDDI--------------------------- 63 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG----GGGGCCCCCSCEEEEE---------------------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc----ceeeeccccceeeeec---------------------------
Confidence 334566789999999999999999988643211 0011111000000000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHH---HhccccCCeEEEEEEcCCC
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATM---LNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~---~~~~~~aD~ailVVda~~g 140 (182)
. ......+.++||||+.+|...+ ...+..+|++|+|+|+.+.
T Consensus 64 --~-----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 64 --S-----NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp --C-----CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC
T ss_pred --c-----CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc
Confidence 0 0112679999999999987665 5677889999999999985
No 138
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.19 E-value=4.3e-12 Score=94.89 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=57.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++|+|||||+++|.+...... .....+.......+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~--------------------------------- 46 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA---HEMENSEDTYERRIMV--------------------------------- 46 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC---------------CEEEEEEEE---------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc---ccCCCcCCeeeEEEEE---------------------------------
Confidence 5799999999999999999985322100 0000111110000000
Q ss_pred CcccccceEEEeeCCChhHHHHHHH-hccccCCeEEEEEEcCCCc----ccccccccchh----hHHHHhHhccchhhh
Q psy1174 98 GRFQLVRHVSFVDCPGHDILMATML-NGAAVMDAALLLIGCDNAA----KTPEIVDCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~~f~~~~~-~~~~~aD~ailVVda~~g~----~~~qt~e~l~~----~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|...+. ..+..+|++++|+|+.+.. ......+...+ .++...+.||+|+.+
T Consensus 47 --~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 47 --DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp --TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred --CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 01126788999999998876333 3357799999999998741 11111111111 123345689999763
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=8.3e-12 Score=96.37 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=65.5
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
|..++..+|+++|+.|+|||||+++|.+..... +... |....+.. . +..
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---~~~~--t~~~~~~~-~-~~~------------------------ 71 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIW---EYDP--TLESTYRH-Q-ATI------------------------ 71 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCS---CCCT--TCCEEEEE-E-EEE------------------------
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCc---ccCC--CCCceEEE-E-EEE------------------------
Confidence 344566899999999999999999998532110 0000 01000000 0 000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc----ccchh----hHHHHhHhccc
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV----DCPGH----DILMATMLNGA 163 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~----e~l~~----~il~~~~~nk~ 163 (182)
......+.++||||+.+ .......+..+|++++|+|+.+..-..... +...+ .+....++||+
T Consensus 72 --------~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 72 --------DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp --------TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred --------CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 01126789999999987 444556668899999999998741111111 11110 12234568999
Q ss_pred hhhh
Q psy1174 164 AVMD 167 (182)
Q Consensus 164 d~~~ 167 (182)
|+.+
T Consensus 143 Dl~~ 146 (196)
T 2atv_A 143 DLDH 146 (196)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9865
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.19 E-value=1.8e-12 Score=114.79 Aligned_cols=112 Identities=15% Similarity=0.031 Sum_probs=60.9
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++..... .....+.|.+.....+.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~--v~~~~gtT~d~~~~~i~--------------------------------- 268 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAI--VTDLPGTTRDVVESQLV--------------------------------- 268 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSC--CSCCTTCCHHHHHHEEE---------------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccc--ccCCCCeeEEEEEEEEE---------------------------------
Confidence 3569999999999999999998631100 00011222221111000
Q ss_pred CCcccccceEEEeeCCChhHHHHH--------HHhccccCCeEEEEEEcCCCcccccccccchhh--HHHHhHhccchhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMAT--------MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD--ILMATMLNGAAVM 166 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~--------~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~--il~~~~~nk~d~~ 166 (182)
..+..+.++||||+.++... ....+..+|++++|+|+..+ ...+..+.+.+. .....++||+|+.
T Consensus 269 ----~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~~~~~~~i~~~l~~~piivV~NK~Dl~ 343 (462)
T 3geh_A 269 ----VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG-WTTGDQEIYEQVKHRPLILVMNKIDLV 343 (462)
T ss_dssp ----ETTEEEEECC--------------------CCCCSCSEEEEEEETTTC-SCHHHHHHHHHHTTSCEEEEEECTTSS
T ss_pred ----ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC-CCHHHHHHHHhccCCcEEEEEECCCCC
Confidence 01267999999998765432 23356889999999999987 544444333221 2334568999987
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
+.
T Consensus 344 ~~ 345 (462)
T 3geh_A 344 EK 345 (462)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 141
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=2e-12 Score=99.43 Aligned_cols=113 Identities=13% Similarity=0.049 Sum_probs=68.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|+.|+|||||+++|.+..... . ...|+...+. .. +.. .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~---~--~~~t~~~~~~-~~-~~~--------------------------~- 62 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPE---E--YVPTVFDHYA-VS-VTV--------------------------G- 62 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCC---S--CCCSSCCCEE-EE-EES--------------------------S-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC---C--CCCcccceeE-EE-EEE--------------------------C-
Confidence 45789999999999999999998532110 0 0000000000 00 000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccch----h--hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCPG----H--DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l~----~--~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+..-..... ..+. + .+....+.||+|+.+
T Consensus 63 -----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 63 -----GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp -----SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred -----CEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 01257899999999998877777788999999999998752111111 1111 1 123346799999865
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.18 E-value=2.2e-12 Score=109.11 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=64.9
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+|+|++|+|||||+++|.+..... ..-|+...+..+.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~------~~pT~~~~~~~~~------------------------------- 205 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVE------------------------------- 205 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE------EEEETTEEEEEEE-------------------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC------cccccceEEEEEe-------------------------------
Confidence 345689999999999999999998533110 0001111111000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccc---cccccchh----hHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTP---EIVDCPGH----DILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~---qt~e~l~~----~il~~~~~nk~d~~ 166 (182)
.....+.|+||||+..|.......+..+|++|+|+|+.+.. +.. +..+.+.+ .+..+.++||+|+.
T Consensus 206 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 206 ------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp ------ETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ------cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 11267999999999999887778889999999999997641 111 11111111 12334668999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 280 ~ 280 (329)
T 3o47_A 280 N 280 (329)
T ss_dssp T
T ss_pred c
Confidence 4
No 143
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.18 E-value=3.5e-12 Score=96.20 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=61.4
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|.+.... .+...+.+.......+ .
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~---~~~~~~~t~~~~~~~~-----------------------------~---- 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEF-----------------------------E---- 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS---CC-----CCCCCEEEE-----------------------------E----
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee---ccCCCCcceeeeEEEE-----------------------------E----
Confidence 467999999999999999999874311 0011122221111000 0
Q ss_pred CCcccccceEEEeeCCChhHHH-----HHHHh-cc--ccCCeEEEEEEcCCCcc-cccccccchhhHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILM-----ATMLN-GA--AVMDAALLLIGCDNAAK-TPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~-----~~~~~-~~--~~aD~ailVVda~~g~~-~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|. ..+.. .+ ..+|++++|+|+..... .....+...+........||+|+..
T Consensus 47 ----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 47 ----YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp ----ETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred ----ECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 012679999999987653 11111 11 37899999999986310 0000111111233446689999764
No 144
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.17 E-value=2.3e-11 Score=91.87 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=65.1
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
|+++...+|+++|++|+|||||+++|.+.... .. ...|+...+.. ....
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~---~~--~~~t~~~~~~~--------------------------~~~~ 51 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFP---TD--YVPTVFDNFSA--------------------------NVVV 51 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------CBC--------------------------CCC-
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCC---CC--CCCeeeeeEEE--------------------------EEEE
Confidence 44566789999999999999999999853211 00 00011110100 0000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-cc---chh---hHHHHhHhccch
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DC---PGH---DILMATMLNGAA 164 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~---l~~---~il~~~~~nk~d 164 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.+..-..... .. +.. .+....++||+|
T Consensus 52 --~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (182)
T 3bwd_D 52 --N------GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123 (182)
T ss_dssp --------------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred --C------CEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 0 11256789999999998877777788999999999998751100111 11 111 123346689999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 124 l~~ 126 (182)
T 3bwd_D 124 LRD 126 (182)
T ss_dssp HHT
T ss_pred hhc
Confidence 865
No 145
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.17 E-value=3.9e-12 Score=97.01 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=62.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|+.|+|||||+++|.+... ..+...+++.+.....+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~---~~~~~~~~t~~~~~~~~~-------------------------------- 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV---YIGNWPGVTVEKKEGEFE-------------------------------- 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE---EEEECTTSCCEEEEEEEE--------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc---cccCCCCeeccceEEEEE--------------------------------
Confidence 457899999999999999999987421 001112222221111000
Q ss_pred CCCcccccceEEEeeCCChhHHH-----HHHHh-cc--ccCCeEEEEEEcCCCc-ccccccccchhhHHHHhHhccchhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILM-----ATMLN-GA--AVMDAALLLIGCDNAA-KTPEIVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~-----~~~~~-~~--~~aD~ailVVda~~g~-~~~qt~e~l~~~il~~~~~nk~d~~ 166 (182)
.....+.++||||+.+|. ..+.. .+ ..+|++++|+|+.... ......+..........+.||+|+.
T Consensus 51 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 51 -----YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp -----ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred -----eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 012679999999987662 11111 11 3589999999997521 0000011111122334558999986
Q ss_pred hH
Q psy1174 167 DA 168 (182)
Q Consensus 167 ~~ 168 (182)
..
T Consensus 126 ~~ 127 (188)
T 2wjg_A 126 KS 127 (188)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.16 E-value=2.4e-11 Score=99.71 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
....+|+++|++|+|||||+++|.+..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998643
No 147
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.16 E-value=3.4e-11 Score=100.71 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|.+|+|||||+++|.+.... ......+.|+...+....+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~--~~~~~~~~Ti~~~~~~~~~-------------------------------- 48 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA--FDTRRLGATIDVEHSHLRF-------------------------------- 48 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT--GGGGGCCCCCSEEEEEEEE--------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--ccccCcCCccceEEEEEEe--------------------------------
Confidence 357999999999999999999864211 1122345555544422111
Q ss_pred CCcccccceEEEeeCCChhHHHHHH-----HhccccCCeEEEEEEcCCCcccccccc----cchh------hHHHHhHhc
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATM-----LNGAAVMDAALLLIGCDNAAKTPEIVD----CPGH------DILMATMLN 161 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~-----~~~~~~aD~ailVVda~~g~~~~qt~e----~l~~------~il~~~~~n 161 (182)
....++.++||||+.+|.... ...+..+|++|+|+|+.+. ...+..+ .+.. .+....++|
T Consensus 49 ----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 49 ----LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp ----TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ----CCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 012689999999999985433 3334789999999999986 2111111 0101 233446689
Q ss_pred cchhhh
Q psy1174 162 GAAVMD 167 (182)
Q Consensus 162 k~d~~~ 167 (182)
|+|+.+
T Consensus 124 K~Dl~~ 129 (307)
T 3r7w_A 124 KMDLVQ 129 (307)
T ss_dssp CGGGSC
T ss_pred cccccc
Confidence 999875
No 148
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.15 E-value=9e-12 Score=96.25 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=65.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
..+..+|+++|+.|+|||||+++|.+.... .. ...|+...+. .. +..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~---~~--~~~t~~~~~~-~~-~~~-------------------------- 63 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP---TE--YIPTAFDNFS-AV-VSV-------------------------- 63 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------CCSSEEEE-EE-EEE--------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC---CC--CCCcccceeE-EE-EEE--------------------------
Confidence 345678999999999999999999863210 00 0001110000 00 000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc-ccchh------hHHHHhHhccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV-DCPGH------DILMATMLNGAAVM 166 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~-e~l~~------~il~~~~~nk~d~~ 166 (182)
. .....+.++||||+.+|.......+..+|++|+|+|+.+..-..... ..+.. .+....+.||+|+.
T Consensus 64 ~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 64 D------GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp T------TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred C------CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 0 01146789999999988776666778999999999998752111111 11100 12334568999986
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 138 ~ 138 (201)
T 2q3h_A 138 E 138 (201)
T ss_dssp G
T ss_pred h
Confidence 5
No 149
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.15 E-value=8.2e-11 Score=91.80 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=54.6
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
++...+|+++|++|+|||||+++|++..... ...++...+.. +..
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~------~~~~~~~~~~~---~~~-------------------------- 48 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD------TQTSITDSSAI---YKV-------------------------- 48 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCC------BCCCCSCEEEE---EEC--------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccc------ccCCcceeeEE---EEe--------------------------
Confidence 3456789999999999999999998532110 00111111100 000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHH-HHhccccCCeEEEEEEcCC
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMAT-MLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~-~~~~~~~aD~ailVVda~~ 139 (182)
.+ .....+.++||||+.+|... .......+|++|+|+|+..
T Consensus 49 ~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 49 NN-----NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp SS-----TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred cC-----CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 00 00267999999999999874 4445788999999999986
No 150
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.14 E-value=7e-12 Score=96.54 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=52.1
Q ss_pred ccccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCc
Q psy1174 11 WVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFP 90 (182)
Q Consensus 11 ~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (182)
..++....+|+++|..|+|||||+++|++..... . ...|+...+.. . +..
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~---~--~~~t~~~~~~~-~-~~~----------------------- 64 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFIS---E--YDPNLEDTYSS-E-ETV----------------------- 64 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCS---C--CCTTCCEEEEE-E-EEE-----------------------
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCc---c--cCCCccceeeE-E-EEE-----------------------
Confidence 3445566889999999999999999998532110 0 00011110000 0 000
Q ss_pred ccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 91 CLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|.. +...+..+|++++|+|+.+.
T Consensus 65 ---------~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 65 ---------DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp ---------TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCH
T ss_pred ---------CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCH
Confidence 01126788999999987764 34566889999999999864
No 151
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.13 E-value=6.2e-12 Score=98.98 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=68.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHh-cCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~-g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
....+|+++|..|+|||||+++|+ +..... .....|.+...... . .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~--~---~-------------------------- 59 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVF--H---T-------------------------- 59 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCE--EETTTTEEEEEEEE--E---E--------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEE--E---E--------------------------
Confidence 455789999999999999999965 311100 00011222221110 0 0
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-cccchh------hHHHHhHhccchhh
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCPGH------DILMATMLNGAAVM 166 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l~~------~il~~~~~nk~d~~ 166 (182)
......+.++||||+..|.......+..+|++|+|+|+.++ ...+. ...+.. .+....++||+|+.
T Consensus 60 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 60 ------NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp ------TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred ------CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 01126799999999998877666677899999999999976 21111 111100 12334568999976
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 133 ~ 133 (221)
T 3gj0_A 133 D 133 (221)
T ss_dssp S
T ss_pred c
Confidence 4
No 152
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.12 E-value=1e-10 Score=89.40 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=48.8
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccC
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLR 93 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (182)
.++..+|+++|+.|+|||||+++|++....... .. +....+.. .+..
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~-t~~~~~~~--~~~~-------------------------- 64 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DP-TIEDSYRK--QVVI-------------------------- 64 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CT-TCCEEEEE--EEEE--------------------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCcccc----CC-ccceEEEE--EEEE--------------------------
Confidence 345578999999999999999999853211000 00 00000000 0000
Q ss_pred CCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 94 SSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 94 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
. .....+.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 65 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 105 (190)
T 3con_A 65 D------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS 105 (190)
T ss_dssp T------TEEEEEEEEECCC-----------CTTCSEEEEEEETTCH
T ss_pred C------CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH
Confidence 0 1125689999999999988888888999999999999875
No 153
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.12 E-value=2.2e-11 Score=96.70 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=62.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
.++|+++|.+|+|||||+++|++.... .....+.|.......
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~---~~~~~~~t~~~~~~~----------------------------------- 70 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD---VQSYSFTTKNLYVGH----------------------------------- 70 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE---EECC-----CEEEEE-----------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCcceeeeeee-----------------------------------
Confidence 468999999999999999999864211 000011111111000
Q ss_pred CCcccccceEEEeeCCCh------hH----HHHHHHhccccCCeEEEEEEcCCCccccccc---ccchh------hHHHH
Q psy1174 97 TGRFQLVRHVSFVDCPGH------DI----LMATMLNGAAVMDAALLLIGCDNAAKTPEIV---DCPGH------DILMA 157 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh------~~----f~~~~~~~~~~aD~ailVVda~~g~~~~qt~---e~l~~------~il~~ 157 (182)
.......+.++||||+ .. +. .+......+|++|+|+|+.+. ..-... +.+.. .+...
T Consensus 71 --~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~~~~~pii 146 (228)
T 2qu8_A 71 --FDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSVFSNKSIV 146 (228)
T ss_dssp --EEETTEEEEEEECTTTTTSCGGGCCHHHHH-HHHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTCC-CCCEE
T ss_pred --eecCCCeEEEEECCCCcCcccchhhhHHHH-HHHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHhhcCCcEE
Confidence 0001267999999999 33 22 223335778999999999876 221111 11110 23344
Q ss_pred hHhccchhhh
Q psy1174 158 TMLNGAAVMD 167 (182)
Q Consensus 158 ~~~nk~d~~~ 167 (182)
.++||+|+.+
T Consensus 147 lv~nK~Dl~~ 156 (228)
T 2qu8_A 147 IGFNKIDKCN 156 (228)
T ss_dssp EEEECGGGCC
T ss_pred EEEeCcccCC
Confidence 6699999864
No 154
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.12 E-value=2e-11 Score=96.25 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=68.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
+...+|+++|..|+|||||+++|++..... . ...|+...+.. .+ ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~---~--~~~t~~~~~~~-~~-~~--------------------------- 70 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE---T--YVPTVFENYTA-CL-ET--------------------------- 70 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS---S--CCCCSEEEEEE-EE-EC---------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC---C--cCCeeeeeEEE-EE-EE---------------------------
Confidence 456789999999999999999998532110 0 00011111100 00 00
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccc-ccccchh------hHHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPE-IVDCPGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~q-t~e~l~~------~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++|+|+|+.+..-... ....+.. .+....+.||+|+.+
T Consensus 71 -----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 71 -----EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp -------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred -----CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 0112678999999999998777777899999999999997621111 1111110 122345689999864
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.11 E-value=2.2e-11 Score=106.52 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|++|+|||||+++|+|..... .....|.|.+.....+ .+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~--v~~~~gtT~d~~~~~i-----------------------------~~~- 226 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL--VSPIPGTTRDPVDDEV-----------------------------FID- 226 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE--ECCCC------CCEEE-----------------------------EET-
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc--cCCCCCCcCCceEEEE-----------------------------EEC-
Confidence 34689999999999999999999753110 0011222222111100 111
Q ss_pred CCCcccccceEEEeeCCChhHHHHH------------HHhccccCCeEEEEEEcCCCcccccccccchhh----HHHHhH
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMAT------------MLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHD----ILMATM 159 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~------------~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~----il~~~~ 159 (182)
+..+.++||||...+... ....+..+|++++|+|+..+ ...+......+. ...+..
T Consensus 227 -------g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~-~~~~~~~i~~~l~~~~~~~ilv 298 (439)
T 1mky_A 227 -------GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG-ITRQDQRMAGLMERRGRASVVV 298 (439)
T ss_dssp -------TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTTCEEEEE
T ss_pred -------CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 267899999998554321 23456789999999999987 544432222111 123356
Q ss_pred hccchhhh
Q psy1174 160 LNGAAVMD 167 (182)
Q Consensus 160 ~nk~d~~~ 167 (182)
+||+|+.+
T Consensus 299 ~NK~Dl~~ 306 (439)
T 1mky_A 299 FNKWDLVV 306 (439)
T ss_dssp EECGGGST
T ss_pred EECccCCC
Confidence 89999764
No 156
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.10 E-value=1.3e-11 Score=109.05 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
..++|+++|.+|+|||||+++|++..... ...|+...+..+. .
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------~~~T~~~~~~~~~-----------------------------~-- 363 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT------TIPTVGFNVETVT-----------------------------Y-- 363 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSSEEEEEEE-----------------------------S--
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC------cCCccceeEEEEE-----------------------------e--
Confidence 45789999999999999999998543110 0001111111000 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccc----ccccchh----hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPE----IVDCPGH----DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~q----t~e~l~~----~il~~~~~nk~d~~~ 167 (182)
....+.++||||+..|.......+..+|++|+|+|+.+...... ..+.+.+ .+....++||+|+.+
T Consensus 364 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 364 ------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp ------SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred ------CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 12689999999999998877778899999999999987521111 1111111 133446699999753
No 157
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=4.2e-11 Score=91.44 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=58.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+..+|+++|++++|||||+++|.+..... +....+........+.+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~------------------------------- 59 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP---ELAATIGVDFKVKTISV------------------------------- 59 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT---TCCCCCSEEEEEEEEEE-------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc---cCCCccceEEEEEEEEE-------------------------------
Confidence 45789999999999999999998543110 00011111111100000
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
......+.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 60 ----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 60 ----DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR 100 (195)
T ss_dssp ----TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH
T ss_pred ----CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence 01126789999999999887777788999999999999875
No 158
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.08 E-value=1.1e-10 Score=95.88 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=41.5
Q ss_pred ceEEEeeCCChh-------------HHHHHHHhccccCCeEE-EEEEcCCCccccccc-ccchh----hHHHHhHhccch
Q psy1174 104 RHVSFVDCPGHD-------------ILMATMLNGAAVMDAAL-LLIGCDNAAKTPEIV-DCPGH----DILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~-------------~f~~~~~~~~~~aD~ai-lVVda~~g~~~~qt~-e~l~~----~il~~~~~nk~d 164 (182)
.++.|+||||+. .+...+...+..+|.++ +|+|+..+ ...+.. ..+.. ......++||+|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 579999999963 45555556677888776 68999987 554432 22211 122346699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
+.+
T Consensus 204 l~~ 206 (299)
T 2aka_B 204 LMD 206 (299)
T ss_dssp GSC
T ss_pred cCC
Confidence 864
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.07 E-value=6.1e-12 Score=111.88 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=66.8
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|++|+|||||+++|++.... ......+.|.+.....+ .
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a--~vs~~~gTT~d~~~~~i-----------------------------~----- 287 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA--IVTDIPGTTRDVISEEI-----------------------------V----- 287 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC--CCCCSSCCSSCSCCEEE-----------------------------E-----
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC--ccCCCCCeeeeeEEEEE-----------------------------e-----
Confidence 67999999999999999999863210 00001122221111000 0
Q ss_pred CcccccceEEEeeCCChh-HHH--------HHHHhccccCCeEEEEEEcCCCcccccccccchh--hHHHHhHhccchhh
Q psy1174 98 GRFQLVRHVSFVDCPGHD-ILM--------ATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH--DILMATMLNGAAVM 166 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~-~f~--------~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~--~il~~~~~nk~d~~ 166 (182)
..+..+.++||||+. .+. ......+..+|++|+|+|+.++ ...+..+.+.. ......++||+|+.
T Consensus 288 ---~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~s~~~~~il~~l~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 288 ---IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP-LDEEDRKILERIKNKRYLVVINKVDVV 363 (482)
T ss_dssp ---ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC-CCHHHHHHHHHHTTSSEEEEEEECSSC
T ss_pred ---cCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC-CCHHHHHHHHHhcCCCEEEEEECcccc
Confidence 112679999999987 442 2345677899999999999887 43333332211 12234668999975
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 364 ~ 364 (482)
T 1xzp_A 364 E 364 (482)
T ss_dssp C
T ss_pred c
Confidence 3
No 160
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.05 E-value=1.2e-11 Score=102.27 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|++.... .....|.|+...... ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~---v~~~pg~tv~~~~~~-----------------------------~~---- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSGL-----------------------------VK---- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC---CCSSSCCCCSCEEEE-----------------------------CT----
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCCcEEEEEEE-----------------------------Ee----
Confidence 357999999999999999999974210 000122222211100 00
Q ss_pred CCcccccceEEEeeCCChhHHHH-----HHHh-cc--ccCCeEEEEEEcCCCccc-ccccccchhhHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMA-----TMLN-GA--AVMDAALLLIGCDNAAKT-PEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~-----~~~~-~~--~~aD~ailVVda~~g~~~-~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
. ...+.++||||+..|.. .+.+ .+ ..+|++++|+|+...... ..+.+.....++....+||+|+..
T Consensus 47 ----~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 47 ----K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp ----T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred ----c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 0 25799999999876631 1111 11 369999999999863100 000111111233445689999865
No 161
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.05 E-value=1.9e-10 Score=87.82 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=68.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|++|+|||||+++|.+..... . ...|+...+.. .+ ..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---~--~~~t~~~~~~~-~~-~~--------------------------- 50 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE---N--YVPTVFENYTA-SF-EI--------------------------- 50 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS---S--CCCCSEEEEEE-EE-EC---------------------------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC---C--CCCccceeEEE-EE-EE---------------------------
Confidence 345789999999999999999998532110 0 00011111100 00 00
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc--ccc---ch---hhHHHHhHhccchhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI--VDC---PG---HDILMATMLNGAAVM 166 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt--~e~---l~---~~il~~~~~nk~d~~ 166 (182)
......+.++||||+..|.......+..+|++|+|+|+.+.. .-+. ... +. ..++...+.||+|+.
T Consensus 51 -----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 51 -----DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp -----SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred -----CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 001267899999999998876667779999999999998751 1111 111 00 012334568999987
Q ss_pred h
Q psy1174 167 D 167 (182)
Q Consensus 167 ~ 167 (182)
+
T Consensus 125 ~ 125 (184)
T 1m7b_A 125 T 125 (184)
T ss_dssp G
T ss_pred c
Confidence 4
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.04 E-value=1.2e-10 Score=107.60 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=42.7
Q ss_pred ceEEEeeCCChhHH---HHHHHhccccCCeEEEEEEcCCCcccccccccchh-----hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDIL---MATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGH-----DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f---~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~-----~il~~~~~nk~d~~~ 167 (182)
..+.++||||..+. ...+...+..+|++|+|+|+..+ ......+.+.. ....+.++||+|..+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 36999999998663 34455667889999999999887 44333332211 122346699999864
No 163
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.00 E-value=3.6e-10 Score=88.60 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=57.4
Q ss_pred ccccc--CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCC
Q psy1174 10 NWVSN--EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDD 87 (182)
Q Consensus 10 ~~~~~--~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
.+|.. ....+|+++|..|+|||||+++|.+..... . ...|+...+. ..+ ..+
T Consensus 19 ~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~---~--~~~t~~~~~~-~~~-~~~------------------- 72 (205)
T 1gwn_A 19 SHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE---N--YVPTVFENYT-ASF-EID------------------- 72 (205)
T ss_dssp --------CEEEEEEEESTTSSHHHHHHHHHHSCCCS---S--CCCCSEEEEE-EEE-ESS-------------------
T ss_pred CCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCC---C--cCCccceeEE-EEE-EEC-------------------
Confidence 34542 345789999999999999999998532110 0 0011111110 000 000
Q ss_pred CCcccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 88 SFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
.....+.++||||+.+|.......+..+|++|+|+|+.+.
T Consensus 73 -------------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 73 -------------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 112 (205)
T ss_dssp -------------SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred -------------CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH
Confidence 0126789999999999877666677899999999999875
No 164
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.00 E-value=4.1e-10 Score=87.32 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=67.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|++|+|||||+++|.+..... . ...|+...+.. . +..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~~~~-~-~~~----------------------------- 68 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPE---V--YVPTVFENYIA-D-IEV----------------------------- 68 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS---S--CCCSSCCCCEE-E-EEE-----------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCc---c--cCCcccceEEE-E-EEE-----------------------------
Confidence 4689999999999999999998532110 0 00000000000 0 000
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCc-ccccccccc---hh---hHHHHhHhccchhhh
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAA-KTPEIVDCP---GH---DILMATMLNGAAVMD 167 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~~qt~e~l---~~---~il~~~~~nk~d~~~ 167 (182)
......+.++||||+.+|.......+..+|++++|+|+.+.. +.......+ .. .+....++||+|+.+
T Consensus 69 ---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 69 ---DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp ---TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred ---CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 011257899999999999877777789999999999998741 111101111 11 123346689999865
No 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.97 E-value=1e-09 Score=84.25 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=53.8
Q ss_pred ccccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCc
Q psy1174 11 WVSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFP 90 (182)
Q Consensus 11 ~~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (182)
...+++..+|+++|..|+|||||+++|++......... |.......+.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-----t~~~~~~~~~~-------------------------- 62 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-----EGGRFKKEIVV-------------------------- 62 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-----TCEEEEEEEEE--------------------------
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-----CcceEEEEEEE--------------------------
Confidence 34456778999999999999999999985321100000 00000000000
Q ss_pred ccCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 91 CLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
. .....+.++||||+..|. .+..+|++++|+|+.+.
T Consensus 63 ---~------~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~ 98 (184)
T 3ihw_A 63 ---D------GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDE 98 (184)
T ss_dssp ---T------TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCH
T ss_pred ---C------CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCH
Confidence 0 011567889999998877 45678999999999975
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.95 E-value=3.1e-10 Score=93.88 Aligned_cols=112 Identities=11% Similarity=-0.032 Sum_probs=67.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
...+|+++|.+|+|||||+++|.+...... ... |+...+.. .+ .. .
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~----~~~-t~~~~~~~-~~-~~--------------------------~- 199 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIP-TVFDNYSA-NV-MV--------------------------D- 199 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS----CCC-CSEEEEEE-EE-EE--------------------------T-
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc----cCC-cccceeEE-EE-EE--------------------------C-
Confidence 457899999999999999999984321100 000 11111100 00 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccc-c-cc---ch-h--hHHHHhHhccchhhh
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEI-V-DC---PG-H--DILMATMLNGAAVMD 167 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt-~-e~---l~-~--~il~~~~~nk~d~~~ 167 (182)
.....+.++||||+.+|.......+..+|++++|+|+.+. ...+. . .. +. + .+....+.||+|+.+
T Consensus 200 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 200 -----GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP-ASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp -----TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred -----CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 0114577999999999987777778999999999999875 21111 1 10 00 0 123346699999864
No 167
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.95 E-value=6.9e-10 Score=94.14 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=37.8
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
+.+.|+||||+.++...+ ...+|++++|+|+..+ ...+....-...+....++||+|..+
T Consensus 149 ~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~-~~~~~l~~~~~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 149 YDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGG-DDLQGIKKGLMEVADLIVINKDDGDN 208 (341)
T ss_dssp CSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------CCCCHHHHHHCSEEEECCCCTTC
T ss_pred CCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCcc-HHHHHHHHhhhcccCEEEEECCCCCC
Confidence 789999999987766543 5899999999999876 33222210001123446799999865
No 168
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.95 E-value=3.6e-10 Score=85.80 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.9
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+|+++|++|+|||||+++|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999999864
No 169
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.1e-09 Score=94.72 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=56.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+|+++|.+|+|||||+|+|++.... .....+.|.+.....+.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~pftT~~~~~g~~~---------------------------------- 115 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE---AAEYEFTTLVTVPGVIR---------------------------------- 115 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC---GGGTCSSCCCEEEEEEE----------------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCceeeeeeEEEE----------------------------------
Confidence 47999999999999999999974321 11112333332221111
Q ss_pred CcccccceEEEeeCCChh-------HHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++.|+||||.. ......+..++.+|++++|||+.++
T Consensus 116 ---~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p 162 (376)
T 4a9a_A 116 ---YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKP 162 (376)
T ss_dssp ---ETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSH
T ss_pred ---eCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCcc
Confidence 112789999999973 2344567778999999999999875
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.93 E-value=2.7e-10 Score=97.17 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=28.7
Q ss_pred ceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCC
Q psy1174 104 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~ 139 (182)
..+.++||||+.. +.....+.+..+|++|+|||+..
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCc
Confidence 5799999999744 44555666778999999999975
No 171
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.92 E-value=1.3e-09 Score=82.06 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcc
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPC 91 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
|.+.+..+|+++|..|+|||||+++|.+...... ..|+...+. ..+..
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~------~~t~~~~~~--~~~~~------------------------ 49 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL------EKTESEQYK--KEMLV------------------------ 49 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCC------SSCSSSEEE--EEEEE------------------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCCc------CCCcceeEE--EEEEE------------------------
Confidence 3445678899999999999999999985321100 001100000 00000
Q ss_pred cCCCCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 92 LRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 92 ~~~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
. .....+.+.||||+.++ ..+..+|++|+|+|+.+.
T Consensus 50 --~------~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~ 85 (178)
T 2iwr_A 50 --D------GQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDE 85 (178)
T ss_dssp --T------TEEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCH
T ss_pred --C------CEEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCH
Confidence 0 01256889999999763 234669999999999875
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.91 E-value=8.2e-10 Score=93.97 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred ceEEEeeCCChhHH-------------HHHHHhccccCCeEEEEEEcCCCcccccc-cccc----hhhHHHHhHhccchh
Q psy1174 104 RHVSFVDCPGHDIL-------------MATMLNGAAVMDAALLLIGCDNAAKTPEI-VDCP----GHDILMATMLNGAAV 165 (182)
Q Consensus 104 ~~i~lIDtPGh~~f-------------~~~~~~~~~~aD~ailVVda~~g~~~~qt-~e~l----~~~il~~~~~nk~d~ 165 (182)
..+.++||||..++ ...+...+..+|++|+|||+..-....+. .+.+ ........++||+|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 46999999998665 44455667899999999987532122111 1111 111234456999998
Q ss_pred hh
Q psy1174 166 MD 167 (182)
Q Consensus 166 ~~ 167 (182)
++
T Consensus 216 ~~ 217 (360)
T 3t34_A 216 MD 217 (360)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=4.8e-10 Score=87.01 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=24.3
Q ss_pred cccCCCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 12 VSNEISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 12 ~~~~~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.+...|+++|++|+|||||+++|++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334455689999999999999999998743
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.90 E-value=2.1e-10 Score=102.58 Aligned_cols=123 Identities=14% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|.+|+|||||+++|++.... . ....|+...+..... |. .... .....
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~--~~~~t~g~~~~~~~~----------~~---~~~v----~~~~~-- 94 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD---P--KESQTHGLNVVTKQA----------PN---IKGL----ENDDE-- 94 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC----------------CCCEEEEEG----------GG---SGGG----TTCST--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC---C--CCCCccceEEEEecc----------cc---ccce----eecCC--
Confidence 44578999999999999999999964311 0 011111111100000 00 0000 00000
Q ss_pred CCCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccc-cccccchhh--HHHHhHhccchhhh
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTP-EIVDCPGHD--ILMATMLNGAAVMD 167 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~-qt~e~l~~~--il~~~~~nk~d~~~ 167 (182)
.....+.++||||+..|.......+..+|++|+|+|+..+.... ...+...+. .......||+|+.+
T Consensus 95 ------~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 95 ------LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp ------TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred ------CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 11278999999998887765555567899999999998651000 000100011 23345689999764
No 175
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=1.9e-09 Score=93.55 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=24.4
Q ss_pred ceEEEeeCCChhHH-------HHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f-------~~~~~~~~~~aD~ailVVda~~g 140 (182)
.++.|+||||+.+. .......++.+|++++|+|+.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998542 12223456899999999999875
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.87 E-value=5.3e-09 Score=89.07 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=38.7
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCcccccccccchhhHHHHhHhccchhhh
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~e~l~~~il~~~~~nk~d~~~ 167 (182)
...+.||||||...-. ...+..+|++++|+|+..+ ...+.....-..+....++||+|...
T Consensus 171 ~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~-~~~~~l~~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 171 GFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTG-DQLQGIKKGVLELADIVVVNKADGEH 231 (355)
T ss_dssp TCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTT-CTTTTCCTTSGGGCSEEEEECCCGGG
T ss_pred CCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCC-ccHHHHHHhHhhcCCEEEEECCCCcC
Confidence 3789999999964422 2234889999999999876 22222110001124456699999874
No 177
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=83.64 Aligned_cols=88 Identities=14% Similarity=-0.023 Sum_probs=53.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRS 94 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (182)
....+|+++|.+|+|||||+++|.+..... . ...+.+.+.....+.+ .
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~--~~~~~~~~~~~~~~~~-----------------------------~ 68 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-A--HEPENPEDTYERRIMV-----------------------------D 68 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-G--GTTTSCTTEEEEEEEE-----------------------------T
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-c--CCCCcccceEEEEEEE-----------------------------C
Confidence 345789999999999999999997532110 0 0111111110000000 0
Q ss_pred CCCCcccccceEEEeeCCChhHHHHH-HHhccccCCeEEEEEEcCCC
Q psy1174 95 SCTGRFQLVRHVSFVDCPGHDILMAT-MLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 95 ~~~~~~~~~~~i~lIDtPGh~~f~~~-~~~~~~~aD~ailVVda~~g 140 (182)
.....+.+.||||...+... ....+..+|++|+|+|+.+.
T Consensus 69 ------~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~ 109 (195)
T 3cbq_A 69 ------KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR 109 (195)
T ss_dssp ------TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred ------CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCH
Confidence 01256788899999876542 33345779999999999864
No 178
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.84 E-value=8.4e-10 Score=88.09 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+...|+++|..++|||||+.+++...- ..+ ...|+...+....+ .. .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f---~~~--~~~Tig~d~~~k~~-~~--------------------------~- 58 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF---DNT--YQATIGIDFLSKTM-YL--------------------------E- 58 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC---C------------CEEEEE-EC--------------------------S-
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC---CCC--cCCccceEEEEEEE-Ee--------------------------c-
Confidence 346799999999999999999984221 111 11122222211110 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....++.+.||+|.++|....-...+.+|++++|.|....
T Consensus 59 -----~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 59 -----DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV 98 (216)
T ss_dssp -----SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH
T ss_pred -----ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh
Confidence 1125788999999999987777778999999999999874
No 179
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.84 E-value=4e-09 Score=91.71 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSS 95 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
....|+++|.+|+|||||+++|++... ......+.|+......+.+ .... ..+. +. .
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~---~~~~~p~tTi~p~~g~v~v---~~~r----~~~l-----------~~--~ 77 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA---SAENFPFCTIDPNESRVPV---PDER----FDFL-----------CQ--Y 77 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEEC---CCHH----HHHH-----------HH--H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc---cccCCCccccCceeEEEEE---CCcc----ceee-----------cc--c
Confidence 346799999999999999999997421 1111122232221111110 0000 0000 00 0
Q ss_pred CCCcccccceEEEeeCCChhHHHH-------HHHhccccCCeEEEEEEcCCC
Q psy1174 96 CTGRFQLVRHVSFVDCPGHDILMA-------TMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 96 ~~~~~~~~~~i~lIDtPGh~~f~~-------~~~~~~~~aD~ailVVda~~g 140 (182)
..........+.++||||...+.. .....++.+|++++|||+.+.
T Consensus 78 ~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 78 HKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp HCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 000000114699999999876554 345667899999999999853
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.84 E-value=1.9e-09 Score=91.79 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....|+++|++|+|||||+++|.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.84 E-value=9.1e-09 Score=88.29 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=51.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..|+++|++|+|||||+++|++... ..+...+.|.+.....+.+ .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~---~~~~~~~~T~d~~~~~i~~-----------------------------~--- 224 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ---KVDTKLFTTMSPKRYAIPI-----------------------------N--- 224 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEE-----------------------------T---
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc---cccCCcccccCCEEEEEEE-----------------------------C---
Confidence 3499999999999999999997432 1111122222211111110 1
Q ss_pred CcccccceEEEeeCCCh---------hHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 98 GRFQLVRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 98 ~~~~~~~~i~lIDtPGh---------~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
+..+.++||||+ +.|. .+...+..+|++++|+|+..+
T Consensus 225 -----g~~v~l~DT~G~i~~lp~~lve~f~-~tl~~~~~aD~il~VvD~s~~ 270 (364)
T 2qtf_A 225 -----NRKIMLVDTVGFIRGIPPQIVDAFF-VTLSEAKYSDALILVIDSTFS 270 (364)
T ss_dssp -----TEEEEEEECCCBCSSCCGGGHHHHH-HHHHGGGGSSEEEEEEETTSC
T ss_pred -----CEEEEEEeCCCchhcCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCC
Confidence 157899999997 3343 345678999999999999876
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.83 E-value=2.4e-09 Score=91.03 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+.|+|+|.+|+|||||+++|+|.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999974
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.78 E-value=4.2e-09 Score=81.46 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=53.2
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
..+|+++|+.|+|||||+++|.+..... +....+........+.+ .+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~---~~~~t~~~~~~~~~i~~-----------------------------~g- 51 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSIQV-----------------------------DG- 51 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------CCCSCEEEEEEEEE-----------------------------TT-
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEE-----------------------------CC-
Confidence 4679999999999999999998743210 00010001110000000 00
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....+.+.||||+..|..........+|++++|+|..+.
T Consensus 52 -----~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (199)
T 2f9l_A 52 -----KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH 90 (199)
T ss_dssp -----EEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred -----EEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH
Confidence 114578899999988765444445778999999999875
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.78 E-value=6.7e-09 Score=88.49 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=33.1
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccccc--ccchhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPEIV--DCPGHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~qt~--e~l~~~il~~~~~nk~d~~~ 167 (182)
..+.|+||||...-.. .....+|++++|+|+..| ...+.. ..+. .....++||+|..+
T Consensus 167 ~~~iliDT~Gi~~~~~---~l~~~~d~vl~V~d~~~~-~~~~~i~~~il~--~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQSEF---AVADMVDMFVLLLPPAGG-DELQGIKRGIIE--MADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--CHH---HHHTTCSEEEEEECCC-------------CC--SCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchhhh---hHHhhCCEEEEEEcCCcc-hhHHHhHHHHHh--cCCEEEEeeecCCC
Confidence 6799999999642222 224689999999999876 322211 1111 12345589999864
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=2.5e-09 Score=91.56 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....+|+|+|++|+|||||+++|.+.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999764
No 186
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.75 E-value=5e-09 Score=97.74 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=40.3
Q ss_pred ceEEEeeCCChhH-------------HHHHHHhcc-ccCCeEEEEEEcCCCccccccc-ccchh----hHHHHhHhccch
Q psy1174 104 RHVSFVDCPGHDI-------------LMATMLNGA-AVMDAALLLIGCDNAAKTPEIV-DCPGH----DILMATMLNGAA 164 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------------f~~~~~~~~-~~aD~ailVVda~~g~~~~qt~-e~l~~----~il~~~~~nk~d 164 (182)
.+++|+||||... +...+...+ ..+|++++|||+..+ +..+.. +.+.. .......+||+|
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~-~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC-SSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC-cchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4689999999532 222233333 578999999999987 555443 22211 123446699999
Q ss_pred hhh
Q psy1174 165 VMD 167 (182)
Q Consensus 165 ~~~ 167 (182)
.++
T Consensus 229 lv~ 231 (772)
T 3zvr_A 229 LMD 231 (772)
T ss_dssp SSC
T ss_pred cCC
Confidence 875
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=7.2e-09 Score=89.14 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.6
Q ss_pred ceEEEeeCCChhHHHHH-------HHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMAT-------MLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~-------~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||...+... ....++.+|++++|+|+.+.
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 57999999998765432 23346889999999999874
No 188
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.74 E-value=1.2e-08 Score=77.95 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=30.3
Q ss_pred ceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.+.||||.+.|.......+..+|++++|+|..++
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKG 92 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGC
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcc
Confidence 6789999999998876544455778999999999876
No 189
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.58 E-value=2.6e-08 Score=88.96 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=38.0
Q ss_pred ceEEEeeCCChh----HHHHHHHhcc--ccCCeEEEEEEcCCCccccc-ccccchhhHH-HHhHhccchhh
Q psy1174 104 RHVSFVDCPGHD----ILMATMLNGA--AVMDAALLLIGCDNAAKTPE-IVDCPGHDIL-MATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~----~f~~~~~~~~--~~aD~ailVVda~~g~~~~q-t~e~l~~~il-~~~~~nk~d~~ 166 (182)
+.+.||||||.. .+..++.... ..+|.+++||||..| .... ..+.++..+. ...++||.|..
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~~~~~a~~~~~~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG-QACEAQAKAFKDKVDVASVIVTKLDGH 253 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC-TTHHHHHHHHHHHHCCCCEEEECTTSC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc-ccHHHHHHHHHhhcCceEEEEeCCccc
Confidence 679999999975 4444433222 378999999999988 3210 0111111122 24668999965
No 190
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.58 E-value=1.1e-07 Score=81.77 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=29.3
Q ss_pred ceEEEeeCCChhHH-------HHHHHhccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~f-------~~~~~~~~~~aD~ailVVda~~g 140 (182)
..+.++||||...+ .......++.+|++++|+|+.+.
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence 57999999998653 23455667899999999999864
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.56 E-value=1.9e-08 Score=77.48 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=52.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcCCccchhhHhhhceeeeeccccceeeecCCCCCCCCcccccCCCCCCCCCcccCCCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGRSNKDDSFPCLRSSC 96 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
...|+++|+.|+|||||+++|.+..... .....+........+.+ .+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~---~~~~t~~~~~~~~~i~~-----------------------------~g- 75 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSIQV-----------------------------DG- 75 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC---SCCCCCSEEEEEEEEEE-----------------------------TT-
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC---CCCCccceEEEEEEEEE-----------------------------CC-
Confidence 3679999999999999999998643210 00010111110000000 00
Q ss_pred CCcccccceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCC
Q psy1174 97 TGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 97 ~~~~~~~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g 140 (182)
....+.+.||||..+|...+......+|++++|+|..+.
T Consensus 76 -----~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 76 -----KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp -----EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH
T ss_pred -----EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH
Confidence 013466799999987765444455678999999998764
No 192
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.53 E-value=1.1e-07 Score=80.51 Aligned_cols=59 Identities=17% Similarity=0.019 Sum_probs=33.9
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCCCccccc-ccccchhhHHHHhHhccchhh
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAKTPE-IVDCPGHDILMATMLNGAAVM 166 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~~q-t~e~l~~~il~~~~~nk~d~~ 166 (182)
+..+.||||||...-.. .....+|++++|+|+..+ ...+ .++.+ ..++....+||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~-~~~~~i~~~i-~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAG-DELQGIKKGI-FELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-------CCTTH-HHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCc-ccHHHHHHHH-hccccEEEEEchhcc
Confidence 37899999999753221 123688999999998755 2211 11101 012223447999954
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.51 E-value=2.9e-08 Score=77.65 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++|+++|++|+|||||+++|++
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.47 E-value=5.7e-09 Score=84.72 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=23.1
Q ss_pred cCCCcceEEECCC---------CCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHV---------AHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~---------~sGKSTLl~~L~g 39 (182)
.....+|+++|.+ |+|||||+++|++
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3456789999999 9999999999996
No 195
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=9.5e-07 Score=69.85 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....+|+++|.+|+|||||+++|.+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999863
No 196
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.39 E-value=3.5e-07 Score=79.34 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.2
Q ss_pred ceEEEeeCCChhH-------HHHHHHhccccCCeEEEEEEcCC
Q psy1174 104 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 104 ~~i~lIDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~ 139 (182)
..+.++|+||... +.......++.+|+++.|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999532 33345566788999999999976
No 197
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.33 E-value=3.4e-07 Score=70.55 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....|+++|.+|+|||||+++|.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.31 E-value=5.3e-07 Score=72.24 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=37.7
Q ss_pred ceEEEeeCCChhHHHH------HHHhccccCCeEEEEEEcCCCcccccccc-cc--------hhhHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMA------TMLNGAAVMDAALLLIGCDNAAKTPEIVD-CP--------GHDILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~------~~~~~~~~aD~ailVVda~~g~~~~qt~e-~l--------~~~il~~~~~nk~d~~~ 167 (182)
+.+.++||||..++.. .+...+.. +++++|||+... ....... .. ...+....++||+|...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-KKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-cCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 5799999999876542 23345566 889999998765 3322211 00 00112235689999764
No 199
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.25 E-value=2.2e-07 Score=84.50 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+..+|+|+|.+|+|||||+|+|+|.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 34567999999999999999999974
No 200
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.20 E-value=1.1e-06 Score=72.78 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
...+|+++|.+|+|||||+|+|.+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34679999999999999999999753
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.13 E-value=8.3e-07 Score=77.53 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++|+++|++|+|||||+++|.|..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCC
Confidence 3568999999999999999999754
No 202
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.12 E-value=1.2e-06 Score=74.30 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=41.0
Q ss_pred ceEEEeeCCChhHHHH---HHHhccccCCeEEEEEEcCCCccccccccc----chh------hHHHHhHhccchhhh
Q psy1174 104 RHVSFVDCPGHDILMA---TMLNGAAVMDAALLLIGCDNAAKTPEIVDC----PGH------DILMATMLNGAAVMD 167 (182)
Q Consensus 104 ~~i~lIDtPGh~~f~~---~~~~~~~~aD~ailVVda~~g~~~~qt~e~----l~~------~il~~~~~nk~d~~~ 167 (182)
.++.+.||||+++|.. ......+.++++|+|+|+.+. ... ..+. +.. .+....+.||+|+.+
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~-~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YIN-AITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTH-HHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHH-HHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 5689999999999853 233456889999999999875 211 1111 111 123346689999864
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.04 E-value=1.2e-06 Score=74.98 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++|+++|.+|+|||||+|+|++.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 467999999999999999999863
No 204
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.03 E-value=3e-06 Score=73.97 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...|+++|++|+|||||+++|++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999874
No 205
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.02 E-value=1e-05 Score=70.79 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=36.6
Q ss_pred ceEEEeeCCChhH----HHHHHH--hccccCCeEEEEEEcCCCcccccc-cccchhhH-H-HHhHhccchhh
Q psy1174 104 RHVSFVDCPGHDI----LMATML--NGAAVMDAALLLIGCDNAAKTPEI-VDCPGHDI-L-MATMLNGAAVM 166 (182)
Q Consensus 104 ~~i~lIDtPGh~~----f~~~~~--~~~~~aD~ailVVda~~g~~~~qt-~e~l~~~i-l-~~~~~nk~d~~ 166 (182)
+.+.+|||||... +...+. ..+..+|.+++|+||..| ..... .+.++..+ . ...++||.|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~~~~~~~~~~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-QQAGIQAKAFKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-GGHHHHHHHHHTTSCSCEEEEEECSSSC
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-HHHHHHHHHHhhcccCCeEEEEeCCCCc
Confidence 6799999999743 444332 223468999999999887 31100 01111111 1 34568999864
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.98 E-value=3.5e-06 Score=73.79 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
++++|+|+.|+|||||+++|.|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 459999999999999999999863
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.98 E-value=2.4e-06 Score=73.20 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+|+++|.+|+|||||+|+|++.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 467999999999999999999863
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.97 E-value=2.2e-06 Score=71.36 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
....+|+++|+.|+|||||+++|.+.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 34467899999999999999999874
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.88 E-value=6.1e-06 Score=67.51 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.+++++|.+|+|||||+++|.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 579999999999999999999743
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.88 E-value=9.3e-06 Score=71.23 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
++..|+++|+.|+||||++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999987
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.52 E-value=0.0002 Score=62.88 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
++..|+++|+.|+||||++..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 212
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.43 E-value=4.4e-05 Score=67.18 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+...|+|+|+.++|||||+|+|+|.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34557899999999999999999863
No 213
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.42 E-value=0.00035 Score=61.12 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
.++.+|+++|+.|+||||++..|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.37 E-value=0.00031 Score=58.33 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=26.6
Q ss_pred ceEEEeeCCChhH--HHHHHH------hccccCCeEEEEEEcCCC
Q psy1174 104 RHVSFVDCPGHDI--LMATML------NGAAVMDAALLLIGCDNA 140 (182)
Q Consensus 104 ~~i~lIDtPGh~~--f~~~~~------~~~~~aD~ailVVda~~g 140 (182)
+.+.+|||||... ....+. ..+..+|.+++|+|+..|
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 225 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 225 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch
Confidence 6799999999765 222221 345578999999999865
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=5.7e-05 Score=63.33 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
...++++|++|+|||||+++|.|..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4568999999999999999998743
No 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.31 E-value=9.6e-05 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.5
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+...|+|+|+.|||||||++.|.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999976
No 217
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.29 E-value=0.00012 Score=56.52 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.6
Q ss_pred cccccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 10 NWVSNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 10 ~~~~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+|...+...|+++|++|||||||++.|.+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445555667899999999999999999964
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.27 E-value=9.8e-05 Score=60.53 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+++++|+.|+|||||+++|.|.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00017 Score=55.94 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.3
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++|+|++|+|||||++.|.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999986
No 220
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.14 E-value=0.00024 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+...++++|++|||||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34456899999999999999999864
No 221
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00027 Score=55.55 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=23.2
Q ss_pred ccccccCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 9 SNWVSNEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 9 ~~~~~~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.++|...+...|+++|++|+|||||+++|.+
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3556666667899999999999999999985
No 222
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.11 E-value=0.00054 Score=57.48 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|+++|+.|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999998873
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.06 E-value=0.00027 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+++++|+.|+|||||++.|.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.06 E-value=0.00031 Score=53.72 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.5
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999863
No 225
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.04 E-value=0.00027 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||+++|.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458999999999999999998743
No 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.04 E-value=0.00029 Score=54.72 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+...|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999753
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00033 Score=53.30 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=20.5
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999853
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.02 E-value=0.00031 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.3
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..++++|+.|||||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999854
No 229
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.98 E-value=0.00039 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+...|+++|++|||||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999998643
No 230
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.96 E-value=0.00037 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|||||||++.|.|..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458999999999999999998754
No 231
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.91 E-value=0.00047 Score=54.28 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=21.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+...++|+|++|||||||++.|.|.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446899999999999999999873
No 232
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.88 E-value=0.00044 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 233
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.83 E-value=0.00058 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999764
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.82 E-value=0.0006 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++|+|+.|||||||+++|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 458999999999999999998743
No 235
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.81 E-value=0.00058 Score=55.79 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 348999999999999999998754
No 236
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.81 E-value=0.00059 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|||||||++.|.|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
No 237
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.80 E-value=0.00059 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998754
No 238
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.80 E-value=0.0006 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||+++|.|..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.79 E-value=0.00075 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
++...|+++|++||||||+++.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3445799999999999999999864
No 240
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.79 E-value=0.00062 Score=55.99 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||+++|.|..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 348999999999999999998754
No 241
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.79 E-value=0.00064 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999764
No 242
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.78 E-value=0.00064 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|+.|||||||+++|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.76 E-value=0.00069 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999764
No 244
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.75 E-value=0.00068 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998764
No 245
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.75 E-value=0.00069 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 246
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.72 E-value=0.00078 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++++|+.|||||||++.|.|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
No 247
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.71 E-value=0.00086 Score=50.60 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++++|+.|+|||||++.|.|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998643
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.71 E-value=0.00075 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=18.5
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
-.++++|++|||||||++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458999999999999999755
No 249
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.71 E-value=0.00077 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 358999999999999999998764
No 250
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.71 E-value=0.00076 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|||||||++.|.|..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999999764
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.70 E-value=0.00079 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.70 E-value=0.00099 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=21.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...|+++|++|+|||||++.|.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 456899999999999999999854
No 253
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.69 E-value=0.00079 Score=58.57 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++++|+.|+|||||+++|.|..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999853
No 254
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.68 E-value=0.00065 Score=53.51 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=20.3
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|+.|||||||+++|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 255
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.68 E-value=0.00064 Score=52.74 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=22.7
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....++|+++|+.|+|||||+++|+.
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999984
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.00084 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+++|++|||||||++.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.68 E-value=0.00085 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999764
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.67 E-value=0.00084 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 259
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.65 E-value=0.0007 Score=53.23 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=16.1
Q ss_pred CcceEEECCCCCChHHHHhHHh-cC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS-GV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~-g~ 40 (182)
...++++|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 64
No 260
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.65 E-value=0.00093 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.0
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++|+|+.|||||||++.|.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999986
No 261
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.64 E-value=0.00089 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.8
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||++.|.|..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458999999999999999998764
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.63 E-value=0.00093 Score=54.97 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 348999999999999999998754
No 263
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.62 E-value=0.00094 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999764
No 264
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.61 E-value=0.001 Score=55.58 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+...|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34557999999999999999999853
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.58 E-value=0.0011 Score=56.75 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++++|++|+|||||+++|.|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999999754
No 266
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.57 E-value=0.0012 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999975
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.57 E-value=0.0012 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+.-.++|+|+.|||||||+++|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34456899999999999999999873
No 268
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0012 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.1
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+...|+++|++|||||||.+.|.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999874
No 269
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.56 E-value=0.0011 Score=55.32 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+.-.++|+|++|+|||||++.|.|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 334689999999999999999985
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.53 E-value=0.0015 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.9
Q ss_pred CcceEEECCCCCChHHHHhHHh---cCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS---GVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~---g~~ 41 (182)
...|+|+|++|||||||++.|. |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999998 654
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.52 E-value=0.0014 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+++|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.52 E-value=0.0015 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+++|.+||||||+++.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999996
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.49 E-value=0.0012 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++++|++|+|||||+++|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 458999999999999999998754
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.48 E-value=0.0016 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.2
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+++|++|||||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.0014 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||++.|.|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358999999999999999999865
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.45 E-value=0.0015 Score=47.81 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=18.4
Q ss_pred cceEEECCCCCChHHHHhHH
Q psy1174 18 SYPGTIGHVAHGKSTVVKAI 37 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L 37 (182)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 277
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.45 E-value=0.0015 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.2
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999974
No 278
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.42 E-value=0.0015 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||+++|.|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 348999999999999999998754
No 279
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.42 E-value=0.0016 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.2
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
-.++++|+.|||||||+.+|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999887
No 280
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.40 E-value=0.0014 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358999999999999999998764
No 281
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.0018 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+..|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998863
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.39 E-value=0.0014 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
-.++|+|++|+|||||+..|.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0016 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999863
No 284
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.37 E-value=0.0015 Score=55.80 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 348999999999999999999764
No 285
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.37 E-value=0.0022 Score=48.72 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...+|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.0018 Score=47.71 Aligned_cols=20 Identities=30% Similarity=0.021 Sum_probs=18.7
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.|+++|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0021 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+..+|+++|++||||||+...|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.35 E-value=0.0019 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.35 E-value=0.0021 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
+.|+|+||+|+|||||++.|+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4489999999999999999974
No 290
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.34 E-value=0.0018 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 348999999999999999998764
No 291
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.33 E-value=0.0018 Score=55.27 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 358999999999999999999764
No 292
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.33 E-value=0.0016 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-+++|+|+.|||||||+++|.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999754
No 293
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0019 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358999999999999999998754
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.31 E-value=0.0014 Score=54.83 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++|+|+.|||||||++.|.|..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3458999999999999999998654
No 295
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.30 E-value=0.0019 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 348999999999999999999764
No 296
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.29 E-value=0.002 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 358999999999999999999764
No 297
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.29 E-value=0.002 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||+++|.|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 357999999999999999998754
No 298
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.28 E-value=0.0018 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-+++|+|++|||||||+++|.+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999999754
No 299
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.28 E-value=0.002 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.9
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...++++|++|+|||||+++|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999998
No 300
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0024 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|++.|.+||||||+...|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.0023 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.9
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..|+++|.+||||||+...|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.27 E-value=0.0019 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.5
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
+|+|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999975
No 303
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.27 E-value=0.0024 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...|+|+|++|||||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.26 E-value=0.0027 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.8
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|.++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.26 E-value=0.0024 Score=47.88 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=19.7
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|++.|.+||||||+++.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999986
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0028 Score=47.87 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
++...|+++|.+||||||++..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999863
No 307
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.25 E-value=0.0021 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....|+|+|+.|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.23 E-value=0.002 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+.-.++|+|+.|||||||+++|++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3347999999999999999999863
No 309
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.0027 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.7
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|.+.|++||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999975
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.22 E-value=0.0029 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.2
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.20 E-value=0.002 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.5
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++++|++|+|||||+.++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.20 E-value=0.0031 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.4
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...+|.++|.+||||||+...|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34578999999999999999996
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.18 E-value=0.0027 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.5
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...|++.|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999996
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.14 E-value=0.0032 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=20.0
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|++.|.+||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0011 Score=50.80 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 316
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.13 E-value=0.0017 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 358999999999999999998764
No 317
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.0028 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.11 E-value=0.002 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..++|+|+.|||||||++.|.|..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.11 E-value=0.0031 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+++|++||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999996
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.10 E-value=0.0031 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+|+|.+||||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.07 E-value=0.0026 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.1
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
..+++|+|++|||||||+++|++..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999755
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.06 E-value=0.0037 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=21.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.++..|+|+|++|||||||++.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 323
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.06 E-value=0.0027 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++++|+.|||||||+++|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998753
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.05 E-value=0.0031 Score=53.83 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhcC
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+.-.++|+|++|||||||+++|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999863
No 325
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.004 Score=47.66 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++++|++|+|||||++.|++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.02 E-value=0.0034 Score=47.10 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+++|.+||||||+...|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999996
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.01 E-value=0.0036 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+++|+.|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999999974
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.01 E-value=0.0036 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+|.|+.|||||||++.|.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999975
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.99 E-value=0.0037 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|.++|.+||||||+...|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999986
No 330
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.99 E-value=0.0017 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999764
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.0036 Score=47.36 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.0
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+++|.+||||||++..|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999973
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.98 E-value=0.0044 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.5
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999999974
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.94 E-value=0.004 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=20.6
Q ss_pred cCCCcceEEECCCCCChHHHHhHHh
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
......|+|.|.+||||||+.+.|.
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHH
Confidence 3345679999999999999999886
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.94 E-value=0.0042 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.8
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+++|.+||||||+...|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999986
No 335
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.93 E-value=0.0029 Score=57.36 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.7
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.|+|+|+.|||||||+++|.|..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999999864
No 336
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.92 E-value=0.0033 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|++|+|||||+.++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999986
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.90 E-value=0.0029 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred CcceEEECCCCCChHHHHhHHhcC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
...++|+|+.|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999964
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.90 E-value=0.0039 Score=46.78 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.4
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+|+.|+|||||+++|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999996
No 339
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.87 E-value=0.0041 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.032 Sum_probs=21.6
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+.-.++|+|+.|||||||+++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4446899999999999999999864
No 340
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.85 E-value=0.004 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=18.7
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.|++.|.+||||||+++.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 341
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0034 Score=55.20 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+...++|+|+.|||||||++.|.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34568999999999999999998753
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.84 E-value=0.0053 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.4
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...|+++|.+||||||+...|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.84 E-value=0.0052 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.3
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++++|+.|||||||+..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.83 E-value=0.0045 Score=47.72 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|++.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.82 E-value=0.0047 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=20.0
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|++.|.+||||||+.+.|.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.79 E-value=0.0061 Score=46.58 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.3
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
....|+++|.+||||||+...|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0053 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+.-.++++|+.|+|||||++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
No 348
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.78 E-value=0.0053 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...++++|+.|+|||||++.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.77 E-value=0.0058 Score=45.83 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+++|.+||||||+++.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999964
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.75 E-value=0.0056 Score=45.75 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.7
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|+++|++||||||+...|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 351
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.74 E-value=0.0051 Score=47.48 Aligned_cols=20 Identities=25% Similarity=0.141 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|+++|++||||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.74 E-value=0.0062 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..+|++.|++||||||+...|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 55689999999999999999996
No 353
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.74 E-value=0.006 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.72 E-value=0.0067 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.3
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
....|++.|.+||||||+...|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999996
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0053 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999754
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.69 E-value=0.0055 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.9
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+++|.+||||||+...|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999997
No 357
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.0052 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358999999999999999999754
No 358
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.61 E-value=0.015 Score=49.24 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=33.2
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~ 138 (182)
...+.+.||+|++.|..........++++|+|+|..
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 367899999999999999888899999999999997
No 359
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.58 E-value=0.0055 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.5
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
-.++|+|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999853
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.56 E-value=0.0066 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.4
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|+++|.+||||||+...|.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999996
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.54 E-value=0.0074 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.4
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
....|.+.|++||||||+...|.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999996
No 362
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.54 E-value=0.0064 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 458999999999999999998754
No 363
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0064 Score=55.28 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|+|||||++.|.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 358999999999999999998654
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.52 E-value=0.0072 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.8
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 365
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.51 E-value=0.0073 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998654
No 366
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.50 E-value=0.0074 Score=46.34 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
-.++++|++|+|||||+.+|.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999873
No 367
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.49 E-value=0.0087 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....++.+.|++|+|||+|+.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999874
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.48 E-value=0.008 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|+++|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999886
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.48 E-value=0.0055 Score=45.73 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=15.7
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|.+.|.+||||||+...|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999996
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.47 E-value=0.0075 Score=45.43 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=18.4
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.|++.|..||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.46 E-value=0.0083 Score=44.31 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.|++.|.+||||||+...|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 372
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.45 E-value=0.006 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|++|||||||++.|.|..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 458999999999999999998754
No 373
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.45 E-value=0.0064 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 458999999999999999998754
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.43 E-value=0.0082 Score=44.19 Aligned_cols=20 Identities=40% Similarity=0.355 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|++.|.+||||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 375
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.42 E-value=0.0085 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+.-.++++|+.|+|||||++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999999975
No 376
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.41 E-value=0.0072 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.4
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|+|||||++.|.|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999999754
No 377
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.40 E-value=0.0073 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.2
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.-++++|++|+|||||+++|.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999999753
No 378
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.39 E-value=0.0072 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|+.|||||||++.|.|..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3458999999999999999998754
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.39 E-value=0.0087 Score=44.31 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.0
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+|+.|+||||++++|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999985
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.38 E-value=0.0088 Score=44.25 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.8
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|++.|.+||||||+...|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 381
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.38 E-value=0.0053 Score=50.41 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=37.3
Q ss_pred eCCChh-HHHHHHHhccccCCeEEEEEEcCCCcccccc---cccchhhHHHHhHhccchhhhH
Q psy1174 110 DCPGHD-ILMATMLNGAAVMDAALLLIGCDNAAKTPEI---VDCPGHDILMATMLNGAAVMDA 168 (182)
Q Consensus 110 DtPGh~-~f~~~~~~~~~~aD~ailVVda~~g~~~~qt---~e~l~~~il~~~~~nk~d~~~~ 168 (182)
+.|||. ....++...+..+|+++.||||..+ ..... .++++ .......+||+|+.+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p-~~~~~~~l~~~l~-~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIP-MSSRNPMIEDILK-NKPRIMLLNKADKADA 65 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTST-TTTSCHHHHHHCS-SSCEEEEEECGGGSCH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CccCCHHHHHHHC-CCCEEEEEECcccCCH
Confidence 569996 6777889999999999999999987 33321 22221 1223456999998864
No 382
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.37 E-value=0.0077 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++|+|+.|||||||+++|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.36 E-value=0.01 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+.++|++|+|||||+.+|.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999753
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.33 E-value=0.0096 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++++|++|+|||||+++|.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999975
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.32 E-value=0.0095 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=19.4
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|+++|++||||||+...|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999996
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.31 E-value=0.0033 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.9
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999963
No 387
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.31 E-value=0.0085 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|+|||||+++|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999754
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.29 E-value=0.0072 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+..|.++|++||||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999863
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.23 E-value=0.0079 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
-.++|+|++|+|||||+..|.+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 390
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.23 E-value=0.0092 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..|+++|.+||||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 391
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.22 E-value=0.013 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+|.|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 392
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.19 E-value=0.0097 Score=54.04 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.8
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++|+|+.|+|||||+++|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 393
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.18 E-value=0.011 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|+.|+|||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999999975
No 394
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.18 E-value=0.011 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+|+|++|||||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999963
No 395
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.17 E-value=0.011 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|++|+|||||+.+|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999985
No 396
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.17 E-value=0.0085 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++++|+.|||||||++.|.|..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 458999999999999999998654
No 397
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.17 E-value=0.013 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.2
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.|+|.|.+||||||+...|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.17 E-value=0.011 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..|+|.|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999996
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.16 E-value=0.0096 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.3
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|+++|.+||||||+...|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999996
No 400
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.14 E-value=0.0087 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++++|+.|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.13 E-value=0.01 Score=45.89 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|++.|.+||||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.10 E-value=0.013 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|+++|.+||||||++..|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999864
No 403
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.011 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEECCCCCChHHHHhHHhcCC
Q psy1174 20 PGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~g~~ 41 (182)
++|+|+.|+|||||+++|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999764
No 404
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.06 E-value=0.011 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.+.++|++|+|||||+.+|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999853
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.04 E-value=0.013 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=19.5
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|.++|.+||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.02 E-value=0.012 Score=49.92 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.1
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.++|+|+.|||||||+++|.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999986
No 407
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.02 E-value=0.012 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
-.++++|++|+|||||+..|.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999986
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.01 E-value=0.015 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.5
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
.+|+++|.+||||||+...|.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.00 E-value=0.012 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.4
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+|+++|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.92 E-value=0.011 Score=51.65 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++|+|+.|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999854
No 411
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.92 E-value=0.0091 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=16.7
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
...|+|.|++||||||+.+.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999886
No 412
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.92 E-value=0.0023 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.3
Q ss_pred ceEEECCCCCChHHHHhHHhcC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~ 40 (182)
.++|+|+.|||||||+++|.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999999753
No 413
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.92 E-value=0.011 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....++.+.|++|+|||+|+.++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998864
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.90 E-value=0.015 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.8
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++++|++|+|||||+..|.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999976
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.89 E-value=0.017 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.3
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
.+.|.++|++||||+|....|.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999986
No 416
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.87 E-value=0.017 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+|+|++||||||+...|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.81 E-value=0.016 Score=45.36 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=18.5
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.|++.|.+||||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 418
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.79 E-value=0.018 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....+.+.|++|+|||||+.+|.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999999999974
No 419
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.76 E-value=0.0079 Score=48.80 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=34.5
Q ss_pred CChhH-HHHHHHhccccCCeEEEEEEcCCCccccccc--ccchhhHHHHhHhccchhhhHH
Q psy1174 112 PGHDI-LMATMLNGAAVMDAALLLIGCDNAAKTPEIV--DCPGHDILMATMLNGAAVMDAA 169 (182)
Q Consensus 112 PGh~~-f~~~~~~~~~~aD~ailVVda~~g~~~~qt~--e~l~~~il~~~~~nk~d~~~~~ 169 (182)
|||.. ...++...+..+|+++.|+||..+ ...... +.+ .......+||+|+.+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P-~~~~~~~l~ll--~k~~iivlNK~DL~~~~ 62 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAP-FATSAYGVDFS--RKETIILLNKVDIADEK 62 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTST-TTTSCTTSCCT--TSEEEEEEECGGGSCHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCC-CcCcChHHHhc--CCCcEEEEECccCCCHH
Confidence 88864 334678888999999999999987 333211 122 33344669999988643
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.59 E-value=0.022 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....|++.|.+||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999963
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.58 E-value=0.019 Score=44.91 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=18.4
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
+|.++|++||||+|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999997
No 422
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.58 E-value=0.024 Score=47.73 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=32.2
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~ 138 (182)
..++.+.||.|++.|..........++++|+|+|..
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 367889999999999998888889999999999876
No 423
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.55 E-value=0.021 Score=43.94 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+..|+++|++||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998863
No 424
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.54 E-value=0.022 Score=43.69 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++.+.|++|+|||||+.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 425
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.45 E-value=0.024 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=20.0
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
.++.+.|++|+|||||+.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.44 E-value=0.021 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.8
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+|+|+++||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999874
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.44 E-value=0.022 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|.++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 428
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.36 E-value=0.019 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCcceEEECCCCCChHHHHhHHhcCC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
+.-.++|+|++|||||||++.|+|..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34468999999999999999998653
No 429
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.30 E-value=0.016 Score=52.81 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.++|+|+.|||||||++.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 47999999999999998653
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.29 E-value=0.027 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 431
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.28 E-value=0.024 Score=43.93 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.0
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+|+.|+||||++++|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45899999999999999985
No 432
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.28 E-value=0.023 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++++|+.|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 433
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.20 E-value=0.013 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred ceEEECCCCCChHHHHhHHhcCC
Q psy1174 19 YPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.++|+|+.|||||||++.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 434
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.19 E-value=0.028 Score=42.22 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.9
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++.+.|++|+|||+|+.++..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998864
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.17 E-value=0.023 Score=45.78 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++|+|++|+|||||+.+|.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999998873
No 436
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.13 E-value=0.029 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|+++|+.|+||||++..|.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3455789999999999999998874
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.12 E-value=0.019 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCcceEEECCCCCChHHHHhHHhcC
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
+.-.|+|+|++|||||||++.|.+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3446899999999999999999854
No 438
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.06 E-value=0.17 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.5
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..|+|.|++++|||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4689999999999999999863
No 439
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.01 E-value=0.028 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=19.2
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.+.|++|+|||||+.+|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 440
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.99 E-value=0.026 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.5
Q ss_pred CcceEEECCCCCChHHHHhHHhcCC
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
.-.++++|++|||||||++.|.|..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999998654
No 441
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.96 E-value=0.035 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.2
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++.|+|++|+|||||++.|+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998873
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.91 E-value=0.031 Score=46.64 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=17.4
Q ss_pred eEEECCCCCChHHHHhHHh
Q psy1174 20 PGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 20 V~viG~~~sGKSTLl~~L~ 38 (182)
.+|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999985
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.88 E-value=0.038 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+..|+|+|++++|||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45689999999999999999973
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.86 E-value=0.038 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.....|.+.|++|+|||+|+.+|..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999963
No 445
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.84 E-value=0.025 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.5
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+|+.|+|||||+++|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999997
No 446
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.84 E-value=0.037 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...+.+.|++|+|||||+.+|.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.81 E-value=0.027 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|++.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 448
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.81 E-value=0.027 Score=53.93 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
-.++++|+.|+|||||++.|.|
T Consensus 462 e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999984
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.75 E-value=0.04 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|.++|.+||||||+...|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.68 E-value=0.043 Score=45.12 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.....+.|.|++|+|||||+.++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 451
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.67 E-value=0.043 Score=43.85 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...+.+.|++|+|||+|+.+|..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999974
No 452
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.66 E-value=0.019 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...|+++|..|||||||+++|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 345789999999999999999974
No 453
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.58 E-value=0.045 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+..++.+.|++|+|||+|+.+|.+
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHH
Confidence 345799999999999999999974
No 454
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.58 E-value=0.05 Score=41.17 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=19.1
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..+.+.|++|+|||||+.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.57 E-value=0.043 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|.+.|++|+|||+|+.+|.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3456799999999999999999974
No 456
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.52 E-value=0.012 Score=50.04 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.5
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.++++|+.|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999985
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.48 E-value=0.053 Score=39.32 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.9
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...+|.+.|++|+|||+++.+|-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999963
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.47 E-value=0.045 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.1
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+|.|++++|||||...|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34689999999999999999974
No 459
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.40 E-value=0.045 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=19.4
Q ss_pred CcceEEECCCCCChHHHHhHHh
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+.+++++|++||||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.39 E-value=0.041 Score=42.64 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=18.1
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..++|+|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999977765
No 461
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.38 E-value=0.041 Score=47.29 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.4
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++|+|+.|+|||||+++|.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999973
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.33 E-value=0.036 Score=46.71 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.4
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..+.|+|++|+|||||+.+|.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999853
No 463
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.26 E-value=0.05 Score=46.24 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.2
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
...+.++||||++.|..........++++|+|+|..+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence 4678999999999999888888899999999999997
No 464
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.26 E-value=0.032 Score=47.30 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=31.3
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~ 138 (182)
...+.+.||+|++.|..........+|++|+|+|..
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 367899999999999988888889999999999987
No 465
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.21 E-value=0.053 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.1
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+..++.+.|++|+|||+|+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999988763
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.14 Score=44.68 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+++-|.+.||+|+|||+|+.++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4567799999999999999999975
No 467
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.18 E-value=0.055 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred cceEEECCCCCChHHHHhHHhcC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGV 40 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~ 40 (182)
..|+|+|++++|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
No 468
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.17 E-value=0.035 Score=44.08 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=19.0
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.+.|++|+||||++.+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 469
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.16 E-value=0.05 Score=45.00 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.|.|++|+|||||+.++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.16 E-value=0.049 Score=42.77 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.2
Q ss_pred cceEEECCCCCChHHHHhHHh
Q psy1174 18 SYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~ 38 (182)
..|++.|..||||||+++.|.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.11 E-value=0.061 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....++.+.|++|+|||||+.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.08 E-value=0.039 Score=48.78 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=18.1
Q ss_pred cceEEECCCCCChHHHHhHH
Q psy1174 18 SYPGTIGHVAHGKSTVVKAI 37 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L 37 (182)
-.++|+|++|||||||+.+|
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45899999999999999994
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.08 E-value=0.062 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...+|+++|++|+||||+..+|.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998864
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.06 E-value=0.058 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.3
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...+.+.|++|+|||||+.++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999999974
No 475
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.99 E-value=0.052 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred cceEEECCCCCChHHHHhHHhcCC
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISGVQ 41 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g~~ 41 (182)
-.++|+|+.|||||||++.|.|..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 358999999999999999998653
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.97 E-value=0.064 Score=42.97 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=21.0
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++.+.|++|+|||+|+.+|..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999963
No 477
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.95 E-value=0.052 Score=46.13 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.6
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
.++++|+.|+|||||+++|.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 57999999999999999996
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.94 E-value=0.056 Score=42.64 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=20.2
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...|+|+|++++|||||.-.|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999974
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.91 E-value=0.057 Score=43.05 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=22.0
Q ss_pred cCCCcceEEECCCCCChHHHHhHHhc
Q psy1174 14 NEISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 14 ~~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+...+.+.|++|+|||+|+.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556899999999999999999963
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.75 E-value=0.039 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
....+.+.|++|+|||+|+.+|..
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345688999999999999999973
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.71 E-value=0.064 Score=43.77 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
++++.+.+.|++|+|||+|+.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677789999999999999973
No 482
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.053 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.2
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.+.+.|++|+||||++.+|.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 483
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.62 E-value=0.056 Score=39.17 Aligned_cols=24 Identities=17% Similarity=-0.022 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...+|.+.|++|+|||+++.++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 346799999999999999998864
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.53 E-value=0.078 Score=42.08 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=21.0
Q ss_pred ccCCCcceEEECCCCCChHHHHhHHh
Q psy1174 13 SNEISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 13 ~~~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
.......|++.|..||||||+++.|.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 33455679999999999999999886
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.39 E-value=0.081 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|.+.|++|+|||+|+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3456799999999999999999974
No 486
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.39 E-value=0.062 Score=45.35 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.9
Q ss_pred ceEEECCCCCChHHHHhHHh
Q psy1174 19 YPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~ 38 (182)
..+|+|+.|+||||+++||.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999985
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.28 E-value=0.085 Score=43.39 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCCcceEEECCCCCChHHHHhHHhc
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
.+...|.+.|++|+|||+|+.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999973
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.28 E-value=0.084 Score=41.35 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.3
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...-|++-|..||||||+++.|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 345678999999999999999985
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.28 E-value=0.071 Score=41.24 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.4
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
.-|.+.|++|+|||||.-.|+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999973
No 490
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.11 E-value=0.08 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=20.6
Q ss_pred CCCcceEEECCCCCChHHHHhHHh
Q psy1174 15 EISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 15 ~~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+...+|.++|..+|||||++..+-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 345689999999999999999874
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.01 E-value=0.09 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.6
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
..++.+.|++|+|||+|+.+|..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 492
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.00 E-value=0.071 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.2
Q ss_pred CcceEEECCCCCChHHHHhHHhc
Q psy1174 17 SSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 17 ~~~V~viG~~~sGKSTLl~~L~g 39 (182)
...++|+|+.|+|||||++++.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 34589999999999999999875
No 493
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.00 E-value=0.097 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.6
Q ss_pred cceEEECCCCCChHHHHhHHhc
Q psy1174 18 SYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl~~L~g 39 (182)
..+.+.|++|+|||||+.+|.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4489999999999999999974
No 494
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.99 E-value=0.065 Score=48.79 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.4
Q ss_pred cceEEECCCCCChHHHH
Q psy1174 18 SYPGTIGHVAHGKSTVV 34 (182)
Q Consensus 18 ~~V~viG~~~sGKSTLl 34 (182)
-.++|+|+.|||||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 45899999999999996
No 495
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.99 E-value=0.073 Score=45.06 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=33.8
Q ss_pred cceEEEeeCCChhHHHHHHHhccccCCeEEEEEEcCC
Q psy1174 103 VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139 (182)
Q Consensus 103 ~~~i~lIDtPGh~~f~~~~~~~~~~aD~ailVVda~~ 139 (182)
...+.+.||+|++.|..........+|++|+|+|..+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGG
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcc
Confidence 4678999999999999988888899999999999987
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.86 E-value=0.11 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
+..+|.+.|++|+|||+++.+|.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999996
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.85 E-value=0.11 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.088 Sum_probs=20.8
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+..+|.+.|++|+|||+|+.++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 445799999999999999999963
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.82 E-value=0.073 Score=47.05 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred ceEEECCCCCChHHHHhHHhc
Q psy1174 19 YPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 19 ~V~viG~~~sGKSTLl~~L~g 39 (182)
.++|+|++|+|||||+.+|.+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.80 E-value=0.092 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred CCcceEEECCCCCChHHHHhHHh
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAIS 38 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~ 38 (182)
....|++.|..||||||+++.|.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999985
No 500
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.76 E-value=0.092 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=20.7
Q ss_pred CCcceEEECCCCCChHHHHhHHhc
Q psy1174 16 ISSYPGTIGHVAHGKSTVVKAISG 39 (182)
Q Consensus 16 ~~~~V~viG~~~sGKSTLl~~L~g 39 (182)
+...++|+|+.|+|||||++++.+
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 345689999999999999999875
Done!