RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1174
(182 letters)
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 69.6 bits (169), Expect = 1e-15
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+V+AI+G+ T + EL+R +TIKLGYA I C E C +P Y++
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVC--ESCKKPEAYVT 69
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139
S K + +R +SF+D PGH++LMATML+GAA+MD A+L++ +
Sbjct: 70 EPSCK-------SCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 67.0 bits (163), Expect = 2e-14
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
IGHV GKST + K +E K + + A +
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIE---------KFEKEAAELGKGSFKYAWVLD 60
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 135
+ + + + V+ +D PGH + M+ G + D A+L+I
Sbjct: 61 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILII 115
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 65.8 bits (160), Expect = 2e-14
Identities = 36/129 (27%), Positives = 47/129 (36%), Gaps = 51/129 (39%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKN--------------ELERNITIKLGYANAKIYK 66
GTIGHV HGK+T+ A++ V N E R ITI + + K
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 67 CDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAA 126
RH S VDCPGH + M+ GAA
Sbjct: 67 -------------------------------------RHYSHVDCPGHADYIKNMITGAA 89
Query: 127 VMDAALLLI 135
MD A+L++
Sbjct: 90 QMDGAILVV 98
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLI 173
VDCPGH + M+ GAA MD A+L++
Sbjct: 71 HVDCPGHADYIKNMITGAAQMDGAILVV 98
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 64.1 bits (155), Expect = 2e-13
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
IGHV HGKST+V + + G+ + K K E +
Sbjct: 7 IVIGHVDHGKSTLVGRL----------------LMDRGFIDEKTVKEAEEAAKKLGKESE 50
Query: 81 GRSNKDDSFPCLRS-SCTGRFQLV------RHVSFVDCPGHDILMATMLNGAAVMDAALL 133
+ D R T + + +D PGH + M+ GA+ DAA+L
Sbjct: 51 KFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAIL 110
Query: 134 LIGCDNAAKTPEIVDCP 150
++ +
Sbjct: 111 VVSAKKGEYEAGMSVEG 127
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 54.2 bits (129), Expect = 4e-10
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C N +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC- 67
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNA 140
C + VR VSF+D PGH+ LM TML GA++MD A+L+I +
Sbjct: 68 -------------PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 114
Query: 141 AKTPEIVDCPGH 152
P+ +
Sbjct: 115 CPRPQTREHLMA 126
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 51.3 bits (122), Expect = 1e-08
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 34/132 (25%)
Query: 21 GTIGHVAHGKSTVVKAI---SGV----------QTVRFKNELERNITIKLGYANAKIYKC 67
I HV HGKST+ ++ +G+ T K+E ER ITIK
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTA-----ISL 75
Query: 68 DNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV 127
+E I +++ + ++ +D PGH + + V
Sbjct: 76 YSEMSDEDVKEIKQKTDGNS----------------FLINLIDSPGHVDFSSEVTAALRV 119
Query: 128 MDAALLLIGCDN 139
D AL+++
Sbjct: 120 TDGALVVVDTIE 131
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 50.2 bits (119), Expect = 1e-08
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 22 TIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISG 81
T G+V GKST++ + + +++ LE
Sbjct: 14 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 73
Query: 82 RSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDN 139
+ + R D PGH+ M GA+ D A++L+
Sbjct: 74 G-------ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY 124
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 47.7 bits (113), Expect = 9e-08
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 50/132 (37%)
Query: 21 GTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKC 67
GTIGHV HGK+T+ AI+ + + E R ITI +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 68 DNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAV 127
H + DCPGH + M+ G A
Sbjct: 67 -------------------------------------HYAHTDCPGHADYVKNMITGTAP 89
Query: 128 MDAALLLIGCDN 139
+D +L++ ++
Sbjct: 90 LDGCILVVAAND 101
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 43.7 bits (102), Expect = 3e-06
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
IGHV GKST+ I + + K +E + K ++ + +
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTME---------KIEREAKEAGKESWYLSWALD 78
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138
S + + + R S +D PGH + M+NGA+ D +L+I
Sbjct: 79 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 136
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 42.8 bits (100), Expect = 8e-06
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 24/119 (20%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITI-KLGYANAKIYKCDNEKCSRPACYI 79
G H+ GK+T + I L I K+G + D
Sbjct: 10 GIAAHIDAGKTTTTERI-----------LYYTGRIHKIGEVHEGAATMD----FMEQERE 54
Query: 80 SGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCD 138
G + C ++ +D PGH + V+D A+++
Sbjct: 55 RGITITAAVTTCFWKD--------HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS 105
Score = 27.7 bits (61), Expect = 0.67
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 146 IVDCPGHDILMATMLNGAAVMDAALLLIG 174
I+D PGH + V+D A+++
Sbjct: 75 IIDAPGHVDFTIEVERSMRVLDGAIVVFD 103
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 36.6 bits (83), Expect = 6e-04
Identities = 12/103 (11%), Positives = 26/103 (25%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYIS 80
G GH+ HGK+T+ K ++ + + ++L + +
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPG 68
Query: 81 GRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLN 123
+ G +L+ N
Sbjct: 69 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 111
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 32.9 bits (74), Expect = 0.015
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 16/92 (17%)
Query: 21 GTIGHVAHGKSTVVKAI---SGVQTVR------------FKNELERNITIKLGYANAKIY 65
+GH GK+T+ +A+ +G + R T++ ++
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRT-GVAPLLF 64
Query: 66 KCDNEKCSRPACYISGRSNKDDSFPCLRSSCT 97
+ Y + ++
Sbjct: 65 RGHRVFLLDAPGYGDFVGEIRGALEAADAALV 96
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 32.3 bits (72), Expect = 0.019
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACY 78
+GHV HGK+T++ I G V + IT +G + + +
Sbjct: 9 SVLGHVDHGKTTLLDHIRG-SAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKF 63
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.067
Identities = 13/125 (10%), Positives = 29/125 (23%), Gaps = 16/125 (12%)
Query: 23 IGHVAHGKSTVVKAIS---------GVQTVRFKNEL---ERNITIKLGYANAKIYKCDNE 70
+G GK+T+ + + E +I ++ +I +
Sbjct: 6 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYG 65
Query: 71 KCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDA 130
K + + +D PG G +M+
Sbjct: 66 PNGAIVESYDRLMEKFNEYLNKILRLEKE----NDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 131 ALLLI 135
+
Sbjct: 122 LPYPL 126
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.3 bits (62), Expect = 0.47
Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 31/176 (17%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
+G + GKS+V++ I G + + + + L + I D + ++
Sbjct: 30 VGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI-ADDGSQTQEWGEFLHKP 88
Query: 83 SNKDDSFPCLRS---------------------SCTGRFQLVRHVSFVDCPGHDILMATM 121
++ F +R + V +++ VD PG +
Sbjct: 89 NDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGD 148
Query: 122 LNGAAVMDAALLLIGCDNAAKTPEIVDCPGHDILMATMLNGAAVMDAALLLIGKFK 177
+++ + I+ T N AL L +
Sbjct: 149 QPTDIEQQIRRMVM---------AYIKKQNAIIVAVTPANTDLANSDALQLAKEVD 195
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.8 bits (60), Expect = 0.52
Identities = 15/126 (11%), Positives = 32/126 (25%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
+G GKST++ + GV+ + G + +
Sbjct: 11 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL 70
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGCDNAAK 142
D + V + P +++ + + L+ D A
Sbjct: 71 GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 130
Query: 143 TPEIVD 148
E +
Sbjct: 131 PEEAMK 136
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 27.7 bits (60), Expect = 0.61
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 21 GTIGHVAHGKSTVVKAISGVQTVRFKNE 48
+G GKST+ AI +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPI 39
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.3 bits (59), Expect = 1.1
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 23 IGHVAHGKSTVVKAISG 39
G GK++++ ++
Sbjct: 9 AGPQNSGKTSLLTLLTT 25
>d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei
[TaxId: 51453]}
Length = 207
Score = 26.9 bits (59), Expect = 1.4
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 67 CDNEKCSRPACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFV--DCPGHDILMATMLNG 124
+E PA G S G ++ CP +++ G
Sbjct: 36 TTSEAIVYPA---CGGQASCGGISYANSVVNGTNAAAAAINNFHNSCPDTQLVLVGYSQG 92
Query: 125 AAVMDAALLLIGCDNA 140
A + D AL G
Sbjct: 93 AQIFDNALCGGGDPGE 108
>d1g66a_ c.69.1.30 (A:) Acetylxylan esterase {Penicillium
purpurogenum [TaxId: 28575]}
Length = 207
Score = 26.2 bits (57), Expect = 2.1
Identities = 18/78 (23%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 75 PACYISGRSNKDDSFPCLRSSCTGRFQLVRHVSFV--DCPGHDILMATMLNGAAVMDAAL 132
PAC S G + V+ CP I++ G +MD AL
Sbjct: 44 PACGGQSSCGGASYSS---SVAQGIAAVASAVNSFNSQCPSTKIVLVGYSQGGEIMDVAL 100
Query: 133 LLIGCDNAAKTPEIVDCP 150
G N T V
Sbjct: 101 CGGGDPNQGYTNTAVQLS 118
Score = 25.0 bits (54), Expect = 5.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 149 CPGHDILMATMLNGAAVMDAALLLIG 174
CP I++ G +MD AL G
Sbjct: 79 CPSTKIVLVGYSQGGEIMDVALCGGG 104
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.9 bits (55), Expect = 2.4
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 2/99 (2%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
+G GKST+ + + ++E +T + Y + + + +
Sbjct: 6 VGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATM 121
+ + LV V +
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLA 102
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (55), Expect = 2.7
Identities = 13/141 (9%), Positives = 36/141 (25%), Gaps = 1/141 (0%)
Query: 23 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNEKCSRPACYISGR 82
G GKS+++ A++G + + + + + +
Sbjct: 7 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 66
Query: 83 SNKDDSFPCLRSSCTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIGC-DNAA 141
R + + D + + ++ D
Sbjct: 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126
Query: 142 KTPEIVDCPGHDILMATMLNG 162
+T + + GH ++ + G
Sbjct: 127 ETLGMSEVNGHALIRLSARTG 147
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.0 bits (56), Expect = 2.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 23 IGHVAHGKSTVVKAISGVQ 41
+G + GKS+V++ G
Sbjct: 32 VGGQSAGKSSVLENFVGRD 50
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.8 bits (55), Expect = 3.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 23 IGHVAHGKSTVVKAISG 39
+G GKST++ + G
Sbjct: 11 VGRPNVGKSTLLNKLLG 27
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 25.7 bits (55), Expect = 3.6
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 21 GTIGHVAHGKSTVVKAIS---GVQTVRFKNELERNITIKLGYANAKIYKCDNEK 71
G GK T I + ++ + G A +
Sbjct: 5 FLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTR 58
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 24.6 bits (54), Expect = 3.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 159 MLNGAAVMDAALLLIGK 175
++G V+ AA+ I K
Sbjct: 84 KVDGLGVLKAAVAAIKK 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.412
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,195
Number of extensions: 27695
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 45
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)