BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11740
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FCQ|A Chain A, Crystal Structure (Monoclinic) Of Bee Venom Hyaluronidase
pdb|1FCU|A Chain A, Crystal Structure (Trigonal) Of Bee Venom Hyaluronidase
pdb|1FCV|A Chain A, Crystal Structure Of Bee Venom Hyaluronidase In Complex
With Hyaluronic Acid Tetramer
pdb|2J88|A Chain A, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 350
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 217/389 (55%), Gaps = 46/389 (11%)
Query: 60 PENAVPKEQFHVYWNVPTFQCHQYGLNFSEV-RRWGIIENENGNFRGNEIALLYDPGVFP 118
P+N +F+VYWNVPTF CH+YGL F EV ++GI++N FRG EIA+LYDPG+FP
Sbjct: 2 PDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFP 61
Query: 119 ALLRAGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTA 178
ALL+ G+ V RNGGVPQ G+LT+H+Q H++ + IPD +F G
Sbjct: 62 ALLKDPNGNVVARNGGVPQLGNLTKHLQVFRDHLINQ-IPDKSFPG-------------- 106
Query: 179 KFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQE 238
+G+IDFE WRP+F +N+ SL Y+KLS + R HP W V QE
Sbjct: 107 --------------VGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQE 152
Query: 239 ASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRN 298
A RFE+ + FM +L +++RP A WGYY +P C+N TP QC + ND+
Sbjct: 153 AKRRFEKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKM 212
Query: 299 HWLFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELY 358
WLF + L PS+Y++ N+T +R+ + GR+ E RI Q +S
Sbjct: 213 SWLFESEDVLLPSVYLRW-NLTSGERVGLVGGRVKEALRIAR----------QMTTSRKK 261
Query: 359 VCTFIWFKYFDNKDF-LKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLH 417
V + W+KY D +D L +D+ L +G +G IIWGSS D+NT+ KC YL+
Sbjct: 262 VLPYYWYKYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYLN 321
Query: 418 NTLGPAVKTV----RRTPKMYLDDSIDNI 442
N LGPAVK + ++ +D S+D +
Sbjct: 322 NELGPAVKRIALNNNANDRLTVDVSVDQV 350
>pdb|2ATM|A Chain A, Crystal Structure Of The Recombinant Allergen Ves V 2
Length = 331
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 198/364 (54%), Gaps = 42/364 (11%)
Query: 65 PKEQFHVYWNVPTFQCHQYGLNFSEVRRWGIIENENGNFRGNEIALLYDPGVFPALLRAG 124
PK F++YWNVPTF CHQY L F EV + I N +F+G++IA+ YDPG FPALL
Sbjct: 4 PKRVFNIYWNVPTFMCHQYDLYFDEVTNFNIKRNSKDDFQGDKIAIFYDPGEFPALLSLK 63
Query: 125 GGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVR 184
G + KRNGGVPQEG++T H+Q + + K+ P+ FSG
Sbjct: 64 DGKYKKRNGGVPQEGNITIHLQKFIEN-LDKIYPNRNFSG-------------------- 102
Query: 185 ARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASVRFE 244
+G+IDFE WRP+F +N+G++ ++ S + R HP W + EAS RFE
Sbjct: 103 --------IGVIDFERWRPIFRQNWGNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFE 154
Query: 245 QAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHWLFSA 304
+ A+ FM +L L +K R +A WGYYG+P CFN +P N P+C + ND+ WLF+
Sbjct: 155 KYARFFMEETLKLAKKTRKQADWGYYGYPYCFNMSPNNLVPECDVTAMHENDKMSWLFNN 214
Query: 305 STSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELYVCTFIW 364
L PS+YV+Q +T R+ +QGR+ E RI P V ++ W
Sbjct: 215 QNVLLPSVYVRQE-LTPDQRIGLVQGRVKEAVRISNNLKHSP-----------KVLSYWW 262
Query: 365 FKYFDNKD-FLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPA 423
+ Y D + FL ++D+ G +G+IIWGSS DVN+ KC+ L +YL LGP
Sbjct: 263 YVYQDETNTFLTETDVKKTFQEIVINGGDGIIIWGSSSDVNSLSKCKRLQDYLLTVLGPI 322
Query: 424 VKTV 427
V
Sbjct: 323 AINV 326
>pdb|2PE4|A Chain A, Structure Of Human Hyaluronidase 1, A Hyaluronan
Hydrolyzing Enzyme Involved In Tumor Growth And
Angiogenesis
Length = 424
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 164/371 (44%), Gaps = 53/371 (14%)
Query: 64 VPKEQFHVYWNVPTFQCHQYGLNFSEVRRWGIIENENGNFRGNEIALLYDP--GVFPALL 121
+P F WN T C + +V + ++ N FRG ++ + Y G +P
Sbjct: 8 LPNRPFTTVWNANTQWCLERHGVDVDVSVFDVVANPGQTFRGPDMTIFYSSQLGTYPYYT 67
Query: 122 RAGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFK 181
G F GG+PQ L H+ ++ IP P FSG
Sbjct: 68 PTGEPVF----GGLPQNASLIAHLARTFQDILAA-IPAPDFSG----------------- 105
Query: 182 SVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASV 241
L +ID+E WRP + N+ + D YR+ SR + + +HP W V A
Sbjct: 106 -----------LAVIDWEAWRPRWAFNWDTKDIYRQRSRALVQAQHPDWPAPQVEAVAQD 154
Query: 242 RFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNY---TPRNQKPQCTPSVRDNNDRN 298
+F+ AA+ +M +L L R LRP+ WG+YGFP C+NY +P N QC +R ND+
Sbjct: 155 QFQGAARAWMAGTLQLGRALRPRGLWGFYGFPDCYNYDFLSP-NYTGQCPSGIRAQNDQL 213
Query: 299 HWLFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNR--IKAGKPVYPFIWLQSDSSE 356
WL+ S +LYPS+Y+ ++Q R+ E R + AG P P +
Sbjct: 214 GWLWGQSRALYPSIYMPAVLEGTGKSQMYVQHRVAEAFRVAVAAGDPNLPVL-------- 265
Query: 357 LYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYL 416
YV F Y FL ++ ++L G GV++W S + T+ C+++ Y+
Sbjct: 266 PYVQIF----YDTTNHFLPLDELEHSLGESAAQGAAGVVLWVSWENTRTKESCQAIKEYM 321
Query: 417 HNTLGPAVKTV 427
TLGP + V
Sbjct: 322 DTTLGPFILNV 332
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 164 GELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYR 216
GEL+F ++ HQLTA+F R LS L +D HW + E F L Y+
Sbjct: 217 GELFF--WVHHQLTARFDFER----LSNWLDPVDELHWDRIIREGFAPLTSYK 263
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550
N L I +DG V Y ++L C L ++P D +C + + ++ +
Sbjct: 107 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAY 153
>pdb|3U1L|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
pdb|3U1M|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
Length = 240
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 324 RMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDFLKDSDMINAL 383
R+RF+ RL + +RI+ +++S + C F+ FKY N +F K++ L
Sbjct: 159 RIRFVFSRLGDIDRIR---------YVESKN-----CGFVKFKYQANAEFAKEAMSNQTL 204
Query: 384 IIP-------KKMGTNGVIIWGS 399
++P ++ GT ++ W +
Sbjct: 205 LLPSDKEWDDRREGTGLLVKWAN 227
>pdb|3TP2|A Chain A, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
pdb|3TP2|B Chain B, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
Length = 229
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 324 RMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDFLKDSDMINAL 383
R+RF+ RL + +RI+ +++S + C F+ FKY N +F K++ L
Sbjct: 161 RIRFVFSRLGDIDRIR---------YVESKN-----CGFVKFKYQANAEFAKEAMSNQTL 206
Query: 384 IIP-------KKMGTNGVIIWGS 399
++P ++ GT ++ W +
Sbjct: 207 LLPSDKEWDDRREGTGLLVKWAN 229
>pdb|1KWF|A Chain A, Atomic Resolution Structure Of An Inverting Glycosidase In
Complex With Substrate
Length = 363
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 376 DSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHN 418
D D+ ALI K+ WGSS +N ++ R+L+N L+N
Sbjct: 122 DEDIALALIFADKL-------WGSSGAINYGQEARTLINNLYN 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,777,950
Number of Sequences: 62578
Number of extensions: 793741
Number of successful extensions: 1547
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 10
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)