Query psy11740
Match_columns 563
No_of_seqs 119 out of 279
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 17:43:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01630 Glyco_hydro_56: Hyalu 100.0 6E-131 1E-135 995.7 21.5 321 62-432 3-337 (337)
2 PF02931 Neur_chan_LBD: Neurot 94.1 0.011 2.4E-07 54.9 -0.6 47 504-550 103-149 (217)
3 TIGR00860 LIC Cation transport 84.7 0.47 1E-05 51.0 1.6 43 508-550 135-179 (459)
4 KOG3643|consensus 82.1 0.46 1E-05 52.1 0.2 50 499-548 132-181 (459)
5 KOG3642|consensus 80.8 0.63 1.4E-05 51.2 0.7 46 504-549 145-190 (466)
6 PF09015 NgoMIV_restric: NgoMI 78.1 3.4 7.4E-05 43.0 4.9 56 217-273 29-90 (278)
7 KOG3644|consensus 60.4 2.8 6.1E-05 46.0 -0.1 51 501-551 144-194 (457)
8 cd02991 UAS_ETEA UAS family, E 39.7 18 0.00039 32.5 1.7 58 327-401 1-60 (116)
9 PLN02892 isocitrate lyase 38.7 27 0.00058 39.9 3.2 88 307-413 123-217 (570)
10 PRK06946 lipid A biosynthesis 37.1 79 0.0017 32.0 5.9 39 215-253 42-80 (293)
11 PRK11572 copper homeostasis pr 36.2 26 0.00056 36.1 2.4 58 341-416 51-113 (248)
12 cd02958 UAS UAS family; UAS is 35.8 41 0.00088 28.9 3.2 56 327-399 1-58 (114)
13 COG1560 HtrB Lauroyl/myristoyl 35.7 79 0.0017 33.3 5.8 40 215-254 54-93 (308)
14 COG3142 CutC Uncharacterized p 35.6 30 0.00066 35.8 2.7 84 330-436 41-129 (241)
15 PRK08706 lipid A biosynthesis 34.1 94 0.002 31.2 5.9 42 215-257 37-78 (289)
16 PF03932 CutC: CutC family; I 32.5 19 0.00042 35.7 0.8 57 340-414 49-110 (201)
17 PRK06860 lipid A biosynthesis 32.1 1.1E+02 0.0023 31.3 5.9 39 215-253 57-95 (309)
18 PRK05645 lipid A biosynthesis 32.1 1.1E+02 0.0023 30.9 6.0 43 214-257 41-83 (295)
19 PRK07920 lipid A biosynthesis 31.3 1E+02 0.0022 31.2 5.7 38 215-252 37-74 (298)
20 PRK08943 lipid A biosynthesis 31.2 1E+02 0.0023 31.5 5.8 42 216-258 63-104 (314)
21 PRK06553 lipid A biosynthesis 30.9 1.1E+02 0.0024 31.2 5.9 41 217-258 62-102 (308)
22 PRK08734 lipid A biosynthesis 30.3 1.1E+02 0.0024 31.2 5.8 41 216-257 44-84 (305)
23 TIGR02082 metH 5-methyltetrahy 29.3 34 0.00074 42.0 2.2 61 196-271 930-990 (1178)
24 TIGR02208 lipid_A_msbB lipid A 28.3 1.3E+02 0.0029 30.5 5.9 41 216-257 54-94 (305)
25 PRK08419 lipid A biosynthesis 28.1 1.3E+02 0.0028 30.3 5.8 41 216-257 44-85 (298)
26 PRK05646 lipid A biosynthesis 27.5 1.3E+02 0.0029 30.6 5.8 35 220-254 59-93 (310)
27 PRK08025 lipid A biosynthesis 26.2 1.5E+02 0.0033 30.1 5.9 41 216-257 56-96 (305)
28 PRK08733 lipid A biosynthesis 24.6 1.7E+02 0.0037 29.9 5.9 42 216-258 58-99 (306)
29 PF13200 DUF4015: Putative gly 24.2 1.7E+02 0.0036 31.2 5.9 30 372-401 285-314 (316)
30 cd02990 UAS_FAF1 UAS family, F 24.0 2.3E+02 0.005 26.8 6.2 93 329-458 3-104 (136)
31 TIGR02207 lipid_A_htrB lipid A 23.5 1.9E+02 0.0041 29.3 5.9 39 216-254 52-90 (303)
32 cd01388 SOX-TCF_HMG-box SOX-TC 23.1 2.6E+02 0.0057 22.6 5.7 31 213-243 10-40 (72)
33 KOG3645|consensus 20.9 29 0.00064 37.6 -0.3 57 492-548 113-175 (449)
34 COG4003 Uncharacterized protei 20.7 60 0.0013 29.4 1.6 23 249-271 69-93 (98)
35 PF10929 DUF2811: Protein of u 20.7 1.5E+02 0.0032 24.9 3.7 26 218-243 12-37 (57)
36 PRK05906 lipid A biosynthesis 20.1 2.2E+02 0.0047 31.7 6.0 40 214-253 53-92 (454)
37 PF04280 Tim44: Tim44-like dom 20.0 1.5E+02 0.0034 26.3 4.1 44 218-261 3-46 (147)
No 1
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=100.00 E-value=5.6e-131 Score=995.68 Aligned_cols=321 Identities=40% Similarity=0.864 Sum_probs=267.9
Q ss_pred CCCCCCceEEEeecCccccc-cCCCcccccccceeEeCCCCcccCCcEEEEeCC--CCCceEecCCCCccccccCCCCCC
Q psy11740 62 NAVPKEQFHVYWNVPTFQCH-QYGLNFSEVRRWGIIENENGNFRGNEIALLYDP--GVFPALLRAGGGDFVKRNGGVPQE 138 (563)
Q Consensus 62 ~~~~~~pF~v~WNVPT~~C~-k~gv~~~~L~~fgIv~N~~~~FrGq~ItIFY~~--GlyPyi~~~~~G~~~~vNGGlPQ~ 138 (563)
|+++++||.|+|||||++|+ ++++++ +|+.||||+|++++|+||+|||||++ |+||||++ .|++ +||||||+
T Consensus 3 p~~~~~pF~~~WN~Pt~~C~~~~~v~l-~L~~f~Iv~N~~~~f~G~~itIfY~~~lG~yP~~~~--~~~~--~NGGlPQ~ 77 (337)
T PF01630_consen 3 PIIPNRPFVVYWNVPTEMCHKRFNVFL-DLSAFGIVQNPNQTFRGQNITIFYEPRLGLYPYYDE--QGKP--VNGGLPQN 77 (337)
T ss_dssp SSBTTBSSEEEEES-GGGGGGGT---T-CHCCCTEB--GGG-SSSSSEEEEESTSSST--EEEE--TSEE--ETTSSGGG
T ss_pred CCCCCCCEEEEECCCHHHHhhccCCCC-CchhcCCeeCccccccCCeEEEEeCCCCCCcceECC--CCCe--ecCCCCCC
Confidence 79999999999999999998 688888 69999999999999999999999999 99999994 5655 99999999
Q ss_pred CCHHHHHHHHHhhhccCcccCCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeEEEEccccccccccccCChHHHHHH
Q psy11740 139 GDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKL 218 (563)
Q Consensus 139 gnLt~HL~ka~~DI~~~~IPd~~F~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LaVIDwE~WRPvw~rNWgsk~iYR~~ 218 (563)
|||++||+|+++||. ++||+++|+| |||||||+|||+|+||||+|+|||++
T Consensus 78 ~~L~~HL~k~~~dI~-~~ip~~~f~G----------------------------LaVIDwE~WRP~w~rNw~~k~iYr~~ 128 (337)
T PF01630_consen 78 GNLSAHLEKAKEDIN-EYIPDPDFSG----------------------------LAVIDWEEWRPLWRRNWGSKDIYRNE 128 (337)
T ss_dssp S-HHHHHHHHHHHHH-HHS--TT--S----------------------------EEEEE--SS-SSGGG--GGGHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HhCCCCCCCc----------------------------ceEEeccccccchhhcCCCcHHHHHH
Confidence 999999999999999 9999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeccCCccCCCCCCC--CCCCCCccccccCC
Q psy11740 219 SRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRN--QKPQCTPSVRDNND 296 (563)
Q Consensus 219 S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYgFP~CyNy~~~~--~tg~Cp~~~~~~ND 296 (563)
|++|||++||+|++++++++|+++||+|||+||+|||+|||+|||+|+||||+||+|||+++.+ |||+||+.++.+||
T Consensus 129 S~~lv~~~hp~ws~~~v~~~A~~~FE~aAr~fM~eTL~l~k~lRP~~lWGyY~FP~CyN~~~~~~~ytg~C~~~~~~~ND 208 (337)
T PF01630_consen 129 SIELVRQQHPDWSEKEVEKEAKKEFEKAARKFMEETLRLAKRLRPNALWGYYLFPDCYNYDYKQPNYTGSCPEIEKKRND 208 (337)
T ss_dssp HHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEBT-S---TTCTSCTS--SS--HHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCCCCCcccCCcCCCCChHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998754 58999999999999
Q ss_pred ccccccccccccccccccccccCCcccccc--hhhhhhhhhhhcc----C--CCCeeeEeecccCCccceeeeeeeeeec
Q psy11740 297 RNHWLFSASTSLYPSLYVKQANMTEFDRMR--FMQGRLDETNRIK----A--GKPVYPFIWLQSDSSELYVCTFIWFKYF 368 (563)
Q Consensus 297 ~L~WLW~eSTALYPSIYL~~~~l~~~~~~~--fVr~RV~EA~RVa----~--~~PVypY~~~~~~~~~~y~~~f~r~~Y~ 368 (563)
+|.|||++||||||||||+ ..++++.+.+ ||++||+||+||| . ++|||||+ |+.|+
T Consensus 209 ~L~WLw~~StaLyPSIYL~-~~l~~s~~~~l~fV~~Rv~EA~Rva~~~~~~~~~pV~~Y~---------------r~~~~ 272 (337)
T PF01630_consen 209 QLSWLWKESTALYPSIYLP-KSLKSSENARLYFVRGRVKEAMRVAKLPKPPYPLPVFPYT---------------RYVYY 272 (337)
T ss_dssp TTHHHHHH-SEEB-B---B-CCSTHHHHHHHHHHHHHHHHHHHHHHHTSSTT--EEEEEE---------------ESEET
T ss_pred cchhhhhhcCeeceEEecc-hhcCCccchhHHHHHHHHHHHHHHHhhcCCCCCcceeeee---------------ecccc
Confidence 9999999999999999999 8888877664 8999999999999 2 37999999 98887
Q ss_pred CC-CCCCchhHHHHHhhhhhhcCCCeEEEecCCCCCCcHHHhHHHHHhhhcchhhHHHHhhccch
Q psy11740 369 DN-KDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPK 432 (563)
Q Consensus 369 d~-~~fLsq~DL~nTIgesaalGa~GVVIWGss~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aak 432 (563)
+. .+|||++||++||||+++|||+||||||+|++++|+++|++|++||+++|||||+|||+|||
T Consensus 273 ~~~~~fLs~~DL~~TigesaalGa~GvViWG~s~~~~s~~~C~~l~~Yl~~~LGPyi~nVt~aak 337 (337)
T PF01630_consen 273 DSTDEFLSQEDLVNTIGESAALGAAGVVIWGSSNDVNSKESCQKLRNYLDTTLGPYIVNVTTAAK 337 (337)
T ss_dssp TEEEEE--HHHHHHHHHHHHHTT-SEEEEE--GGGSSSHHHHHHHHHHHHHTHHHHHHHHHHHH-
T ss_pred cCccccchhhHHHHHHHHHHHcCCCeEEEeeccccccChHHHHHHHHHHHhchHHHHHHHHhhcC
Confidence 75 45999999999999999999999999999999999999999999999999999999999997
No 2
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=94.14 E-value=0.011 Score=54.88 Aligned_cols=47 Identities=30% Similarity=0.553 Sum_probs=43.1
Q ss_pred ccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+....|.+||.|.|+--.++++.|.-++..||-|.+.|.+.++++.|
T Consensus 103 ~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~ 149 (217)
T PF02931_consen 103 NSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSY 149 (217)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSS
T ss_pred cccccccccchheeeecccccccccccccccccccceeEEEEecccc
Confidence 35567899999999999999999999999999999999999998866
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=84.72 E-value=0.47 Score=50.98 Aligned_cols=43 Identities=30% Similarity=0.588 Sum_probs=38.3
Q ss_pred cccc--CCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 508 DIRS--DGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 508 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
.+++ ||.|.|.-=.+++..|.-.+.+||-|+++|.+.++..-|
T Consensus 135 ~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y 179 (459)
T TIGR00860 135 LVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGY 179 (459)
T ss_pred EEEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhcc
Confidence 3555 999999999999999999999999999999999887543
No 4
>KOG3643|consensus
Probab=82.08 E-value=0.46 Score=52.07 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=45.5
Q ss_pred cccccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhcc
Q psy11740 499 NTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETF 548 (563)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (563)
+..-.|.+-.+..||.|-|--=.|.-|+|.-.|++||-|+.+|.+..|.+
T Consensus 132 ~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESY 181 (459)
T KOG3643|consen 132 DVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESY 181 (459)
T ss_pred eeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEec
Confidence 34557888899999999999999999999999999999999999998876
No 5
>KOG3642|consensus
Probab=80.83 E-value=0.63 Score=51.21 Aligned_cols=46 Identities=35% Similarity=0.656 Sum_probs=42.0
Q ss_pred ccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccc
Q psy11740 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFH 549 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (563)
|.|-.|..||.|-|---.|.+|-|--+|..||-|+|+|....+.+-
T Consensus 145 N~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~ 190 (466)
T KOG3642|consen 145 NKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYA 190 (466)
T ss_pred CceEEEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccC
Confidence 7788999999999999999999999999999999999998766553
No 6
>PF09015 NgoMIV_restric: NgoMIV restriction enzyme; InterPro: IPR015105 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents NgoMIV-type prokaryotic DNA restriction enzymes exhibiting an alpha/beta structure, with a central region comprising a mixed six-stranded beta-sheet with alpha-helices on each side. A long 'arm' protrudes out of the core of the domain between strands beta2 and beta3 and is mainly involved in the tetramerisation interface of the protein. These restriction enzymes recognise the double-stranded sequence GCCGGC and cleave after G-1 []. ; PDB: 1FIU_C 4ABT_B.
Probab=78.09 E-value=3.4 Score=43.03 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=38.4
Q ss_pred HHHHHHHHh----hCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeccCC
Q psy11740 217 KLSRRIERG----RHP--LWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFP 273 (563)
Q Consensus 217 ~~S~~Lvr~----~hP--~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYgFP 273 (563)
+.|+.+++. ..- .-++....|.+=.+||++.++|+++|+...+-+||+ .|.|.--+
T Consensus 29 ~tS~~IA~gIa~~Lga~~~~~~~laGQtsG~~FE~~v~~fl~~tF~~l~HLRPG-~W~v~~~g 90 (278)
T PF09015_consen 29 KTSRAIAKGIADRLGAPETVSERLAGQTSGNLFEKAVRDFLEETFPHLQHLRPG-DWEVHQVG 90 (278)
T ss_dssp HHHHHHHHHHHHHTT----B-----HHHHHHHHHHHHHHHHHHHHGCGTTTS-S-EEEEEE-C
T ss_pred HHHHHHHHHHHHHhCccccccccCCccccchHHHHHHHHHHHHHhhhccCCCCC-cceEeecC
Confidence 455554443 332 455667789999999999999999999999999998 89988643
No 7
>KOG3644|consensus
Probab=60.41 E-value=2.8 Score=46.02 Aligned_cols=51 Identities=31% Similarity=0.512 Sum_probs=46.6
Q ss_pred cccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhcccee
Q psy11740 501 IFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHHL 551 (563)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (563)
.+-|.+.-|-.||.|-|.-=++|+.-|--.|+-||-|..+|..++|.|-|-
T Consensus 144 ~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn 194 (457)
T KOG3644|consen 144 TKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYN 194 (457)
T ss_pred CCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccc
Confidence 455778889999999999999999999999999999999999999998763
No 8
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=39.68 E-value=18 Score=32.46 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=38.7
Q ss_pred hhhhhhhhhhhcc--CCCCeeeEeecccCCccceeeeeeeeeecCCCCCCchhHHHHHhhhhhhcCCCeEEEecCCC
Q psy11740 327 FMQGRLDETNRIK--AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGSSH 401 (563)
Q Consensus 327 fVr~RV~EA~RVa--~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~fLsq~DL~nTIgesaalGa~GVVIWGss~ 401 (563)
|.+|-.+||+|.| .+++++.|. .+|.++ +.+.|. ++-|+.++++..|. ...|+||..-
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVyl--hs~~~~-~~~~fc-------~~~l~~~~v~~~ln-------~~fv~w~~dv 60 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYL--HGDDHQ-DTDEFC-------RNTLCAPEVIEYIN-------TRMLFWACSV 60 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEE--eCCCCc-cHHHHH-------HHHcCCHHHHHHHH-------cCEEEEEEec
Confidence 4567889999999 568888887 333221 122221 23588899999996 3699999643
No 9
>PLN02892 isocitrate lyase
Probab=38.68 E-value=27 Score=39.90 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=50.8
Q ss_pred ccccccccccccCCcccccchhhhhhhhhhhcc------CCCCeeeEeecccCCccceeeeeeeeeecCCCC-CCchhHH
Q psy11740 307 SLYPSLYVKQANMTEFDRMRFMQGRLDETNRIK------AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKD-FLKDSDM 379 (563)
Q Consensus 307 ALYPSIYL~~~~l~~~~~~~fVr~RV~EA~RVa------~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~-fLsq~DL 379 (563)
++||.=-++ ..-..-.+.+-.+.|.+-..|.. .++|-+-|. .+.-.|-.. |=...+.
T Consensus 123 adYP~~tVP-~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~~~~~~Dyl---------------~PIiADaEtGyG~~~~~ 186 (570)
T PLN02892 123 ADYPMDTVP-NKVEHLFFAQLYHDRKQREARMSMSREERARTPYVDYL---------------KPIIADGDTGFGGTTAT 186 (570)
T ss_pred ccCcccccc-HHHHHHHHHHHHHHHHHHHHHhccCHHHhcCCCccccc---------------cceeeecCCCCCccHHH
Confidence 466654444 22211223334456666666654 356655555 555555444 6455555
Q ss_pred HHHhhhhhhcCCCeEEEecCCCCCCcHHHhHHHH
Q psy11740 380 INALIIPKKMGTNGVIIWGSSHDVNTERKCRSLL 413 (563)
Q Consensus 380 ~nTIgesaalGa~GVVIWGss~d~~S~~~C~~L~ 413 (563)
+.++...++.||+||.|=.. ..+..+|..+.
T Consensus 187 ~~~vk~~ieaGAaGIhIEDQ---~~~~KkCGh~~ 217 (570)
T PLN02892 187 VKLCKLFVERGAAGVHIEDQ---SSVTKKCGHMG 217 (570)
T ss_pred HHHHHHHHHcCCeEEEEECC---CCcccccCCCC
Confidence 69999999999999998422 12456686554
No 10
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.07 E-value=79 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 215 YRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFS 253 (563)
Q Consensus 215 YR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~e 253 (563)
.|+..++-.+.-.|++|++|+++.|++-|...++.++|.
T Consensus 42 rr~v~~~NL~~~fPe~s~~e~~~i~r~~~~~~~~~~~E~ 80 (293)
T PRK06946 42 RRRIVHTNLKLCFPDWSDARREELARRHFRHVIRSYVER 80 (293)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555899999999999999999999988874
No 11
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=36.15 E-value=26 Score=36.09 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCeeeEeecccCCccceeeeeeeeeecCCCCC-Cchh---HHHHHhhhhhhcCCCeEEEec-CCCCCCcHHHhHHHHHh
Q psy11740 341 GKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDS---DMINALIIPKKMGTNGVIIWG-SSHDVNTERKCRSLLNY 415 (563)
Q Consensus 341 ~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~---DL~nTIgesaalGa~GVVIWG-ss~d~~S~~~C~~L~~Y 415 (563)
..||++-+ |+.. .+| +|++ -|...|...+++|++|||+=- +.+..-..+.|+.|.+-
T Consensus 51 ~ipv~vMI---------------RPR~---gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~ 112 (248)
T PRK11572 51 TIPVHPII---------------RPRG---GDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA 112 (248)
T ss_pred CCCeEEEE---------------ecCC---CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH
Confidence 57888877 8764 223 4444 467788899999999999832 33333456778877554
Q ss_pred h
Q psy11740 416 L 416 (563)
Q Consensus 416 l 416 (563)
-
T Consensus 113 a 113 (248)
T PRK11572 113 A 113 (248)
T ss_pred h
Confidence 4
No 12
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=35.75 E-value=41 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=38.0
Q ss_pred hhhhhhhhhhhcc--CCCCeeeEeecccCCccceeeeeeeeeecCCCCCCchhHHHHHhhhhhhcCCCeEEEecC
Q psy11740 327 FMQGRLDETNRIK--AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGS 399 (563)
Q Consensus 327 fVr~RV~EA~RVa--~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~fLsq~DL~nTIgesaalGa~GVVIWGs 399 (563)
|..+-.+||+..| .++|++.|+ .++.|. +...| ..+-|+++++...|.+ -.|+|.-
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~--~~~~c~-~c~~~-------~~~vl~~~~v~~~l~~-------~~v~~~~ 58 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYL--QSEDEF-DSQVL-------NRDLWSNESVKEFIRE-------NFIFWQC 58 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEE--ecCCcc-hHHHH-------HHHHcCCHHHHHHHHh-------CEEEEEe
Confidence 3456788999998 579999998 455552 32322 1235778888888874 3888975
No 13
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.66 E-value=79 Score=33.30 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 215 YRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSS 254 (563)
Q Consensus 215 YR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eT 254 (563)
.++..+.-.+--.|++|+++.++.+++-|+..|+.++|--
T Consensus 54 ~~~~a~~NL~~~FPe~se~ere~i~~~~~~~~~r~~~E~~ 93 (308)
T COG1560 54 RRKIARRNLALCFPEKSEAEREKIVKESFASMGRALLETG 93 (308)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555669999999999999999999999877655
No 14
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=35.56 E-value=30 Score=35.77 Aligned_cols=84 Identities=24% Similarity=0.402 Sum_probs=51.8
Q ss_pred hhhhhhhhccCCCCeeeEeecccCCccceeeeeeeeeecCCCCC-CchhH---HHHHhhhhhhcCCCeEEEecCCCCCC-
Q psy11740 330 GRLDETNRIKAGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDSD---MINALIIPKKMGTNGVIIWGSSHDVN- 404 (563)
Q Consensus 330 ~RV~EA~RVa~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~D---L~nTIgesaalGa~GVVIWGss~d~~- 404 (563)
+-+++|.+. .+.||+|-+ |+. ..+| +|+.+ |..-|...+++|+.|||+=..-.|-+
T Consensus 41 G~~k~a~~~-~~ipv~~MI---------------RPR---gGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~i 101 (241)
T COG3142 41 GVIKEAVEL-SKIPVYVMI---------------RPR---GGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNI 101 (241)
T ss_pred HHHHHHHhh-cCCceEEEE---------------ecC---CCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCcc
Confidence 556677766 678998888 654 2333 45544 45667888999999999966543332
Q ss_pred cHHHhHHHHHhhhcchhhHHHHhhccchhhhc
Q psy11740 405 TERKCRSLLNYLHNTLGPAVKTVRRTPKMYLD 436 (563)
Q Consensus 405 S~~~C~~L~~Yl~~tLGPyI~nVt~aakl~lD 436 (563)
....+++|- ..-||.=++.-+|=-+|.|
T Consensus 102 D~~~le~Li----~aA~gL~vTFHrAFD~~~d 129 (241)
T COG3142 102 DMPRLEKLI----EAAGGLGVTFHRAFDECPD 129 (241)
T ss_pred CHHHHHHHH----HHccCCceeeehhhhhcCC
Confidence 345555543 3344544455555555554
No 15
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.12 E-value=94 Score=31.22 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 215 YRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 215 YR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
.|+..++-.+.-.|++|++++++.|++-|...++.++| ++.+
T Consensus 37 rr~~~~~NL~~~fp~~s~~e~~~i~~~~~~~~~~~~~E-~~~~ 78 (289)
T PRK08706 37 RRRIGEINLAKCFPEWDEEKRKTVLKQHFKHMAKLMLE-YGLY 78 (289)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45556666666689999999999999999999998887 4444
No 16
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=32.47 E-value=19 Score=35.73 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCCeeeEeecccCCccceeeeeeeeeecCCCCC-CchhH---HHHHhhhhhhcCCCeEEEec-CCCCCCcHHHhHHHHH
Q psy11740 340 AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDSD---MINALIIPKKMGTNGVIIWG-SSHDVNTERKCRSLLN 414 (563)
Q Consensus 340 ~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~D---L~nTIgesaalGa~GVVIWG-ss~d~~S~~~C~~L~~ 414 (563)
...||++-+ |+.. .+| +|++| |...|...+++|++|+|+=- +.+..-.++.|+.|.+
T Consensus 49 ~~ipv~vMI---------------Rpr~---gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~ 110 (201)
T PF03932_consen 49 VDIPVHVMI---------------RPRG---GDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIE 110 (201)
T ss_dssp TTSEEEEE-----------------SSS---S-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHH
T ss_pred cCCceEEEE---------------CCCC---CCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHH
Confidence 567888877 7653 233 45444 67888899999999999832 2333334567776644
No 17
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.13 E-value=1.1e+02 Score=31.32 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 215 YRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFS 253 (563)
Q Consensus 215 YR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~e 253 (563)
.|+..++-.+.-.|++|++++++.|++-|..-|+.++|.
T Consensus 57 rr~v~~~NL~~~fPe~s~~e~~~i~~~~~~~~g~~~~E~ 95 (309)
T PRK06860 57 RAKIARRNLELCFPEMSEQEREAIVVKNFESVGMALIET 95 (309)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666899999999999999999999988765
No 18
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.07 E-value=1.1e+02 Score=30.89 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 214 EYRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 214 iYR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
.+|+..++-.+.-.|++|++++++.|++-|...|+.+.| ++.+
T Consensus 41 ~rr~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~~~~~~E-~~~~ 83 (295)
T PRK05645 41 RSREVVRINLSKCFPELSPAELEKLVGQSLMDIGKTLTE-SACA 83 (295)
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344555555555689999999999999999999987665 6555
No 19
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.29 E-value=1e+02 Score=31.20 Aligned_cols=38 Identities=11% Similarity=-0.076 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11740 215 YRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMF 252 (563)
Q Consensus 215 YR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~ 252 (563)
.|+..++-.+.-.|++|++|+++.|++-|...++.++|
T Consensus 37 rr~v~~~NL~~~fPe~s~~e~~~i~~~~~~~~~~~~~E 74 (298)
T PRK07920 37 GVRQLRRNLARVVPDAPAAVLDALVRAAMRSYARYWRE 74 (298)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555689999999999999999999998887
No 20
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=31.22 E-value=1e+02 Score=31.47 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLL 258 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~Lg 258 (563)
|+..++-.+.-.|++|++++++.|++-|+..|+.++| ++.+.
T Consensus 63 r~v~~~NL~~afPe~s~~e~~~i~~~~~~n~~~~~~E-~~~~~ 104 (314)
T PRK08943 63 RRRARINLSLCFPEKSEAEREAIIDEMFATAPQAMLM-MAELA 104 (314)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444555589999999999999999999987665 55554
No 21
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.95 E-value=1.1e+02 Score=31.19 Aligned_cols=41 Identities=10% Similarity=-0.064 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 217 KLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLL 258 (563)
Q Consensus 217 ~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~Lg 258 (563)
+...+-.+.-.|++|++++++.|++-|+..++.++| ++.+.
T Consensus 62 ~v~~~NL~~afPe~s~~e~~~i~~~~~~~~g~~~~E-~~~~~ 102 (308)
T PRK06553 62 RVALDNLRAAFPEKSEAEIEAIALGMWDNLGRLGAE-YAFLD 102 (308)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 445555555689999999999999999999998776 55543
No 22
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.32 E-value=1.1e+02 Score=31.18 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
|+..++-.+.-.|++|++++++.|++-|..-++.++| ++++
T Consensus 44 r~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~g~~~~E-~~~~ 84 (305)
T PRK08734 44 SRVTRRNLELAYPELSPQQRAQLHAQILRSTARQALE-VLRT 84 (305)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 3445555555589999999999999999999987664 4444
No 23
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=29.30 E-value=34 Score=41.96 Aligned_cols=61 Identities=23% Similarity=0.410 Sum_probs=41.9
Q ss_pred EEccccccccccccCChHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecc
Q psy11740 196 IDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYG 271 (563)
Q Consensus 196 IDwE~WRPvw~rNWgsk~iYR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYg 271 (563)
+++=.|+|.|. .||=+..| |...++.+-++|++.|+.+- -|.+.+.--+.++|++-.|||-
T Consensus 930 ~~~id~~~~f~-~w~~~g~~------------~~~~~~~~g~~~~~~~~~~~--~~l~~~~~~~~l~~~~v~g~fp 990 (1178)
T TIGR02082 930 RPYIDWTPFFL-QWQLRGKY------------PILGDEYEGLEAQKLFPDAN--EMLDKLSAENLLHARGVYGYFP 990 (1178)
T ss_pred HHHhChHHHHH-HhCCCCCC------------CCcccccchHHHHHHHHHHH--HHHHHHHhCCCceeeEEEEEee
Confidence 44556899998 99987766 42233444455777777664 4556666667999999999864
No 24
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=28.26 E-value=1.3e+02 Score=30.50 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
|+..++-.+.-.|++|++++++.|++-|..-++.+++. +++
T Consensus 54 r~~~~~NL~~~fP~~s~~e~~~i~~~~~~~~g~~~~E~-~~~ 94 (305)
T TIGR02208 54 RGRARINLSACFPEKSEAERETIIDNNFATFVQVMLSQ-AEL 94 (305)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45555555566899999999999999999999876654 444
No 25
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=28.14 E-value=1.3e+02 Score=30.28 Aligned_cols=41 Identities=10% Similarity=-0.194 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPL-WTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 216 R~~S~~Lvr~~hP~-ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
|+.+++-.+.-.|+ +|++++++.|++-|+..++.++| ++.+
T Consensus 44 r~~~~~NL~~~fp~~~s~~e~~~l~~~~~~~~~~~~~E-~~~~ 85 (298)
T PRK08419 44 RKIAKANLDFCFGESKSQEEKKRIIKKCYENFAFFGLD-FIRN 85 (298)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 44555555556899 99999999999999999976654 4443
No 26
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.46 E-value=1.3e+02 Score=30.59 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 220 RRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSS 254 (563)
Q Consensus 220 ~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eT 254 (563)
++-.+.-.|++|++|+++.|++-|...++.++|--
T Consensus 59 ~~NL~~~fP~~s~~e~~~i~~~~~~~~~~~~~E~~ 93 (310)
T PRK05646 59 ARNLELCFPEKSAAERERLLKENFASTGIAFFEMA 93 (310)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333447999999999999999999999887543
No 27
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=26.24 E-value=1.5e+02 Score=30.05 Aligned_cols=41 Identities=7% Similarity=0.044 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVL 257 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~L 257 (563)
|+..++-.+.-.|++|++|+++.|++-|+.-|+.++| ++.+
T Consensus 56 r~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~g~~~~E-~~~~ 96 (305)
T PRK08025 56 ESIARKNLELCFPQMSAEEREKMIAENFRSLGMALLE-TGMA 96 (305)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3334444555589999999999999999999998887 4444
No 28
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.64 E-value=1.7e+02 Score=29.88 Aligned_cols=42 Identities=7% Similarity=-0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLL 258 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~Lg 258 (563)
|+..++-.+.-.|++|++++++.|++-|..-++.++|. +++.
T Consensus 58 r~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~~~~~~E~-~~~~ 99 (306)
T PRK08733 58 RRAAEVNLKLCFPEQDDAWRARLLRDSFDALGVGLFEF-ARAW 99 (306)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34444444455899999999999999999999887764 3443
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=24.18 E-value=1.7e+02 Score=31.23 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCchhHHHHHhhhhhhcCCCeEEEecCCC
Q psy11740 372 DFLKDSDMINALIIPKKMGTNGVIIWGSSH 401 (563)
Q Consensus 372 ~fLsq~DL~nTIgesaalGa~GVVIWGss~ 401 (563)
..+..+.+...|..+.+.|.+|-++|-.++
T Consensus 285 ~~Yg~~ev~aQI~A~~d~g~~~~llWna~n 314 (316)
T PF13200_consen 285 KEYGPEEVRAQIQALKDAGIEGWLLWNASN 314 (316)
T ss_pred cccCHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 357889999999999999999999998765
No 30
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=23.97 E-value=2.3e+02 Score=26.81 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=52.8
Q ss_pred hhhhhhhhhcc------CCCCeeeEeecccCCc---cceeeeeeeeeecCCCCCCchhHHHHHhhhhhhcCCCeEEEecC
Q psy11740 329 QGRLDETNRIK------AGKPVYPFIWLQSDSS---ELYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGS 399 (563)
Q Consensus 329 r~RV~EA~RVa------~~~PVypY~~~~~~~~---~~y~~~f~r~~Y~d~~~fLsq~DL~nTIgesaalGa~GVVIWGs 399 (563)
+|=+++|++.| ..||.++|. -+|.+ +++. .+-|.-++++..|. +=.|+||-
T Consensus 3 ~Gs~~~Al~~A~~~~~~e~K~L~VYL--H~~~~~~t~~Fc-----------~~~L~se~Vi~fl~-------~nfv~Wg~ 62 (136)
T cd02990 3 IGSLEAAFQEACYRKARDRKLLAIYL--HHDESVLSNVFC-----------SQLLCAESIVQYLS-------QNFITWGW 62 (136)
T ss_pred cCcHHHHHHHHhhhhhhhcceEEEEE--cCCCCccHHHHH-----------HHHhcCHHHHHHHH-------cCEEEEee
Confidence 44566777776 257888887 11111 1111 11377778888886 34999995
Q ss_pred CCCCCcHHHhHHHHHhhhcchhhHHHHhhccchhhhcccccceeeeeecCCccEEEeee
Q psy11740 400 SHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPKMYLDDSIDNIISIYTADDVPFIIIYY 458 (563)
Q Consensus 400 s~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aakl~lD~~~~n~~~~~~~~~~~~~~~~~ 458 (563)
. +...+.=..+...+...+|+-+..+.+ .+..+..||+.+--
T Consensus 63 d--vt~~~~~~~fl~~~~~~~g~~a~~~~~---------------~~~~~~fP~~avI~ 104 (136)
T cd02990 63 D--MTKESNKARFLSSCTRHFGSVAAQTIR---------------NIKTDQLPAILIIM 104 (136)
T ss_pred e--ccchhhhhHHHHhhhhhhhHHHHHHHH---------------hcCcCCCCeEEEEE
Confidence 3 333333334455567778876543322 23356778776543
No 31
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=23.53 E-value=1.9e+02 Score=29.32 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 216 RKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSS 254 (563)
Q Consensus 216 R~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eT 254 (563)
|+..++-.+.-.|+.|++++++.|++-|...++.++|.-
T Consensus 52 r~v~~~NL~~~fP~~s~~e~~~i~~~~~~~~~~~~~E~~ 90 (303)
T TIGR02207 52 VHIARRNLELCFPHMSDAERERLLRENFESTGMALFETG 90 (303)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444448999999999999999999999888654
No 32
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=23.12 E-value=2.6e+02 Score=22.57 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy11740 213 DEYRKLSRRIERGRHPLWTYSAVNQEASVRF 243 (563)
Q Consensus 213 ~iYR~~S~~Lvr~~hP~ws~~~v~~~Ak~eF 243 (563)
-+|.+.-++-+++.||+.+..++.+.+...+
T Consensus 10 ~~F~~~~r~~~~~~~p~~~~~eisk~l~~~W 40 (72)
T cd01388 10 MLFSKRHRRKVLQEYPLKENRAISKILGDRW 40 (72)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4677777888999999999998876554443
No 33
>KOG3645|consensus
Probab=20.87 E-value=29 Score=37.58 Aligned_cols=57 Identities=25% Similarity=0.445 Sum_probs=43.0
Q ss_pred CCCCCCccccccc------cccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhcc
Q psy11740 492 LPAGTPYNTIFGN------TLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETF 548 (563)
Q Consensus 492 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (563)
+|.-.-||..-|+ +-..+..+|.|.+.-=.-.|+.|.-+..+||-|...|..++.+.
T Consensus 113 ~Pdi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw 175 (449)
T KOG3645|consen 113 LPDIVLYNNADGDFEVEDLTNVLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSW 175 (449)
T ss_pred cCcEEEEecccccccccccceEEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEecc
Confidence 4555556633333 12456778998888888899999999999999999999886643
No 34
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.69 E-value=60 Score=29.44 Aligned_cols=23 Identities=35% Similarity=0.756 Sum_probs=20.0
Q ss_pred HHHHHHHH--HHHHhCCCCceeecc
Q psy11740 249 DFMFSSLV--LLRKLRPKAKWGYYG 271 (563)
Q Consensus 249 ~FM~eTL~--LgK~LRP~alWGYYg 271 (563)
+++..||+ ..|.+-|+..||||.
T Consensus 69 ~~L~~~~~~kgvrs~~~~re~G~Y~ 93 (98)
T COG4003 69 KALRVTLVHKGVRSFGPKREWGWYE 93 (98)
T ss_pred HHHHhhHHHHHHHHhccchhhhHHH
Confidence 36778887 899999999999995
No 35
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=20.67 E-value=1.5e+02 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy11740 218 LSRRIERGRHPLWTYSAVNQEASVRF 243 (563)
Q Consensus 218 ~S~~Lvr~~hP~ws~~~v~~~Ak~eF 243 (563)
.|.+---+.||+|+...+-+.|-.-|
T Consensus 12 ~~m~~fie~hP~WDQ~Rl~~aALa~F 37 (57)
T PF10929_consen 12 QAMKDFIETHPNWDQYRLFQAALAGF 37 (57)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 34555567899999999988887766
No 36
>PRK05906 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.06 E-value=2.2e+02 Score=31.71 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11740 214 EYRKLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFS 253 (563)
Q Consensus 214 iYR~~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~e 253 (563)
..|+...+-.+.-.|++|++|+++.|++-|...++.++|-
T Consensus 53 ~RRkva~~NL~laFPekS~~Er~~Iar~~y~nlg~~~lE~ 92 (454)
T PRK05906 53 DYRKTALTNLALAFPEKSFAERYQIARQSVQHVIITFLEL 92 (454)
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666899999999999999999999988774
No 37
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=20.01 E-value=1.5e+02 Score=26.35 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11740 218 LSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKL 261 (563)
Q Consensus 218 ~S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~L 261 (563)
..++-+++..|.++.+...+.|++.|...-.+|...=+...+.+
T Consensus 3 ~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~ 46 (147)
T PF04280_consen 3 SAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPL 46 (147)
T ss_dssp HHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHH
T ss_pred hHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566889999999999999999999998888888777766654
Done!