Query psy11740
Match_columns 563
No_of_seqs 119 out of 279
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 17:44:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fcq_A Hyaluronoglucosaminidas 100.0 9E-137 3E-141 1039.7 23.2 337 60-441 2-349 (350)
2 2atm_A Hyaluronoglucosaminidas 100.0 5E-134 2E-138 1014.3 25.3 325 63-432 2-331 (331)
3 2pe4_A Hyaluronidase-1; hyalur 100.0 3E-132 1E-136 1025.3 25.9 335 62-446 6-352 (424)
4 2qc1_B Acetylcholine receptor 94.5 0.0057 1.9E-07 56.9 -0.5 46 505-550 107-152 (212)
5 3sq6_A ACHBP, neuronal acetylc 94.1 0.0072 2.5E-07 56.2 -0.6 45 505-550 103-147 (204)
6 3tlw_A GLR4197 protein, GLIC; 94.0 0.0099 3.4E-07 58.0 0.1 46 503-548 92-137 (321)
7 3rqw_A ELIC pentameric ligand 93.4 0.012 4.2E-07 57.4 -0.4 60 483-550 76-135 (322)
8 2bg9_A Acetylcholine receptor 93.3 0.017 5.9E-07 57.9 0.4 47 504-550 105-151 (370)
9 2bg9_E Acetylcholine receptor 93.2 0.024 8.1E-07 56.9 1.2 41 509-549 109-149 (370)
10 2bg9_B Acetylcholine receptor 92.5 0.024 8.1E-07 57.0 0.2 43 508-550 109-151 (370)
11 3igq_A GLR4197 protein; plgic 92.4 0.016 5.4E-07 54.1 -1.2 48 503-550 88-135 (201)
12 2bg9_C Acetylcholine receptor 92.4 0.032 1.1E-06 56.0 0.9 43 508-550 111-153 (369)
13 4aq5_E Acetylcholine receptor 92.3 0.041 1.4E-06 57.7 1.7 41 509-549 109-149 (488)
14 4aq5_A Acetylcholine receptor 91.7 0.043 1.5E-06 57.3 1.0 61 483-549 114-174 (461)
15 4aq5_C Acetylcholine receptor 91.5 0.047 1.6E-06 57.8 1.0 41 509-549 133-173 (522)
16 4aod_A Acetylcholine-binding p 91.3 0.039 1.3E-06 51.8 0.1 49 501-550 100-148 (205)
17 4aq5_B Acetylcholine receptor 91.3 0.043 1.5E-06 57.7 0.4 42 509-550 134-175 (493)
18 3rhw_A Avermectin-sensitive gl 90.0 0.039 1.3E-06 54.6 -1.3 47 504-550 107-153 (347)
19 4aoe_A Acetylcholine-binding p 88.6 0.089 3.1E-06 49.5 0.2 47 503-550 102-148 (205)
20 2bj0_A Acetylcholine-binding p 80.5 0.27 9.2E-06 45.3 -0.6 44 505-550 100-144 (203)
21 2wn9_A Soluble acetylcholine r 77.5 0.27 9.1E-06 46.4 -1.7 43 504-550 113-158 (228)
22 1uw6_A Acetylcholine-binding p 76.7 0.46 1.6E-05 44.0 -0.3 42 505-550 102-146 (211)
23 3bul_A Methionine synthase; tr 73.2 2.3 7.8E-05 46.3 3.9 58 198-270 296-354 (579)
24 1msk_A Cobalamin-dependent met 73.1 2.3 8E-05 43.5 3.8 58 198-270 48-106 (331)
25 4afh_A ACHBP; acetylcholine-bi 71.2 0.53 1.8E-05 44.9 -1.3 57 483-550 99-155 (230)
26 2ec4_A FAS-associated factor 1 65.4 3.1 0.00011 38.3 2.5 100 325-458 33-138 (178)
27 1fiu_A Type II restriction enz 47.9 10 0.00034 38.4 3.0 35 234-269 60-94 (286)
28 2o2k_A Methionine synthase; C- 42.5 7.7 0.00026 40.2 1.2 58 198-270 49-112 (355)
29 2bdq_A Copper homeostasis prot 38.4 22 0.00076 34.7 3.6 56 341-414 54-114 (224)
30 1twd_A Copper homeostasis prot 34.9 28 0.00094 34.7 3.7 58 340-415 50-112 (256)
31 3iwp_A Copper homeostasis prot 27.5 58 0.002 32.8 4.7 56 341-414 89-149 (287)
32 1wxl_A Single-strand recogniti 26.0 1.9E+02 0.0065 22.2 6.5 40 213-252 12-60 (73)
33 3u2b_C Transcription factor SO 25.1 1.4E+02 0.0047 23.0 5.6 32 212-243 10-41 (79)
34 2e6o_A HMG box-containing prot 22.6 2.4E+02 0.0081 22.5 6.7 43 211-253 24-77 (87)
35 1wz6_A HMG-box transcription f 20.5 1.9E+02 0.0065 22.6 5.6 42 211-252 14-66 (82)
No 1
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=100.00 E-value=8.7e-137 Score=1039.72 Aligned_cols=337 Identities=46% Similarity=0.917 Sum_probs=299.5
Q ss_pred CCCCCCCCceEEEeecCccccccCCCccccccc-ceeEeCCCCcccCCcEEEEeCCCCCceEecCCCCccccccCCCCCC
Q psy11740 60 PENAVPKEQFHVYWNVPTFQCHQYGLNFSEVRR-WGIIENENGNFRGNEIALLYDPGVFPALLRAGGGDFVKRNGGVPQE 138 (563)
Q Consensus 60 p~~~~~~~pF~v~WNVPT~~C~k~gv~~~~L~~-fgIv~N~~~~FrGq~ItIFY~~GlyPyi~~~~~G~~~~vNGGlPQ~ 138 (563)
|.|+++++||.|+|||||++|+++++++.+|+. |+|++||+++|+||+|||||++|+||||.+.++|+++++||||||+
T Consensus 2 ~~p~~~~~pF~v~WN~PT~~C~~~~~~~~dl~~~f~Iv~N~~~~f~G~~itIfY~~G~yP~~~~~~~g~~~~~NGGiPQ~ 81 (350)
T 1fcq_A 2 PDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVVARNGGVPQL 81 (350)
T ss_dssp --------CCEEEEESCGGGGGGGTCCCTHHHHTTCCBCCGGGCSSSSSEEEEESCSCCCEEC-------CEETTSSGGG
T ss_pred CCCcCCCCCeEEEEcCCHHHhcccCCcccchhcccCeEeCccccccCCeEEEEeCCCCCceeecCCCCCEeecCCCcCCC
Confidence 357899999999999999999999999978998 9999999999999999999999999999965578775569999999
Q ss_pred CCHHHHHHHHHhhhccCcccCCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeEEEEccccccccccccCChHHHHHH
Q psy11740 139 GDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKL 218 (563)
Q Consensus 139 gnLt~HL~ka~~DI~~~~IPd~~F~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LaVIDwE~WRPvw~rNWgsk~iYR~~ 218 (563)
|||++||+|+++||. ++||+++|+| |||||||+|||+|+||||+|+|||++
T Consensus 82 ~~L~~HL~k~~~dI~-~~IP~~~f~G----------------------------LaVIDwE~WRP~w~rNW~~k~iYr~~ 132 (350)
T 1fcq_A 82 GNLTKHLQVFRDHLI-NQIPDKSFPG----------------------------VGVIDFESWRPIFRQNWASLQPYKKL 132 (350)
T ss_dssp CCHHHHHHHHHHHHH-HHCCCTTCCS----------------------------EEEEECCSCCSSGGGCCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhCCCCCCCc----------------------------eEEEEccccCccHhhcccccHHHHHH
Confidence 999999999999999 9999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeccCCccCCCCCCCCCCCCCccccccCCcc
Q psy11740 219 SRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRN 298 (563)
Q Consensus 219 S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYgFP~CyNy~~~~~tg~Cp~~~~~~ND~L 298 (563)
|++|||++||+||+++++++|+++||+|||+||+|||+|||+|||+|+||||+||+|||++++++||+||+.++.|||+|
T Consensus 133 S~~Lv~~~hp~ws~~~v~~~A~~~FE~aAr~FM~eTLkl~k~lRP~~lWGyY~fP~CyN~~~~~~tg~Cp~~~~~~Nd~L 212 (350)
T 1fcq_A 133 SVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKM 212 (350)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEBTCSCCCTTSSSCCSSSCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcccCCCCCcCCCCCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCcccccchhhhhhhhhhhcc-----CCCCeeeEeecccCCccceeeeeeeeeecCCCC-
Q psy11740 299 HWLFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIK-----AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKD- 372 (563)
Q Consensus 299 ~WLW~eSTALYPSIYL~~~~l~~~~~~~fVr~RV~EA~RVa-----~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~- 372 (563)
+|||++||||||||||+ ..++++.+.+||++||+||+||| .++|||||+ |++|+|+.+
T Consensus 213 ~WLw~~StaLyPSIYL~-~~l~~s~~~~fV~~Rv~EA~Rva~~~~~~~~PV~~Y~---------------r~~Y~d~~~~ 276 (350)
T 1fcq_A 213 SWLFESEDVLLPSVYLR-WNLTSGERVGLVGGRVKEALRIARQMTTSRKKVLPYY---------------WYKYQDRRDT 276 (350)
T ss_dssp HHHHTTCSEEBCBCCCC-SSSCHHHHHHHHHHHHHHHHHHHHHCSSCCCEECCEE---------------ESEETTEEEE
T ss_pred hhhhhhcCcccceeecc-cccCCcccchhHHHHHHHHHHHHhhcCCCCCceEEeE---------------eeEecCCccc
Confidence 99999999999999999 88888888899999999999998 357899999 999997665
Q ss_pred CCchhHHHHHhhhhhhcCCCeEEEecCCCCCCcHHHhHHHHHhhhcchhhHHHHhhccchhh----hcccccc
Q psy11740 373 FLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPKMY----LDDSIDN 441 (563)
Q Consensus 373 fLsq~DL~nTIgesaalGa~GVVIWGss~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aakl~----lD~~~~n 441 (563)
||||+||+|||||+|++||+||||||||++++|+++|++|++||+++|||||+|||+||++| .|.++|+
T Consensus 277 fLS~~DL~~TigesaalGa~GiViWGss~~~~s~~~C~~l~~Yl~~~LgPyi~nVt~aa~~~~~~~~~~~~~~ 349 (350)
T 1fcq_A 277 DLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYLNNELGPAVKRIALNNNANDRLTVDVSVDQ 349 (350)
T ss_dssp ECCHHHHHHHHHHHHHTTCSEEEEECCGGGSSSHHHHHHHHHHHHHTHHHHHHC-------------------
T ss_pred cccHHHHHHHHHHHHHcCCCeEEEecccccccCHHHHHHHHHHHHhcchHHHHHHHHHHHhhcceeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 5666665
No 2
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=100.00 E-value=4.9e-134 Score=1014.29 Aligned_cols=325 Identities=43% Similarity=0.867 Sum_probs=309.8
Q ss_pred CCCCCceEEEeecCccccccCCCcccccccceeEeCCCCcccCCcEEEEeCCCCCceEecCCCCccccccCCCCCCCCHH
Q psy11740 63 AVPKEQFHVYWNVPTFQCHQYGLNFSEVRRWGIIENENGNFRGNEIALLYDPGVFPALLRAGGGDFVKRNGGVPQEGDLT 142 (563)
Q Consensus 63 ~~~~~pF~v~WNVPT~~C~k~gv~~~~L~~fgIv~N~~~~FrGq~ItIFY~~GlyPyi~~~~~G~~~~vNGGlPQ~gnLt 142 (563)
.++++||.|+|||||++|+++++++.+|+.|+||+||+++|+||+|||||++|+||||++.++|+++++||||||+|||+
T Consensus 2 ~~~~~pF~v~WN~PT~~C~~~~~~~~~l~~f~Iv~n~~~~f~G~~itIfY~~G~yP~~~~~~~g~~~~~NGGiPQ~~~L~ 81 (331)
T 2atm_A 2 ERPKRVFNIYWNVPTFMCHQYDLYFDEVTNFNIKRNSKDDFQGDKIAIFYDPGEFPALLSLKDGKYKKRNGGVPQEGNIT 81 (331)
T ss_dssp ----CCCEEEEECCGGGGGGGTCCCTTGGGGTCBCCGGGCSSCSSEEEEESCSCCCEEEECSSSCEEEETTSSGGGCCHH
T ss_pred CCCCCceEEEEcCCHHHhccCCCCCCChhhcCceeCccccccCCeEEEEeCCCCCceeecCCCCCEeeCCCCcCCCCCHH
Confidence 46889999999999999999999997899999999999999999999999999999999755788755699999999999
Q ss_pred HHHHHHHhhhccCcccCCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeEEEEccccccccccccCChHHHHHHHHHH
Q psy11740 143 QHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRI 222 (563)
Q Consensus 143 ~HL~ka~~DI~~~~IPd~~F~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LaVIDwE~WRPvw~rNWgsk~iYR~~S~~L 222 (563)
+||+|+++||. ++||+++|+| |||||||+|||+|+||||+|+|||++|++|
T Consensus 82 ~HL~k~~~dI~-~~ip~~~f~G----------------------------LaVIDwE~WRP~w~rNW~~k~iYr~~S~~l 132 (331)
T 2atm_A 82 IHLQKFIENLD-KIYPNRNFSG----------------------------IGVIDFERWRPIFRQNWGNMKIHKNFSIDL 132 (331)
T ss_dssp HHHHHHHHHHH-HHCCCTTCCS----------------------------EEEEECCSCCSSGGGCCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCCCCe----------------------------eEEEEccccCccHhhcccccHHHHHHHHHH
Confidence 99999999999 9999999999 999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeccCCccCCCCCCCCCCCCCccccccCCcccccc
Q psy11740 223 ERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHWLF 302 (563)
Q Consensus 223 vr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYgFP~CyNy~~~~~tg~Cp~~~~~~ND~L~WLW 302 (563)
||++||+||+++|+++|+++||+|||+||+|||+|||+|||+|+||||+||+|||++++++||+||+.++.+||+|+|||
T Consensus 133 v~~~hp~ws~~~v~~~A~~~FE~aar~fM~eTLklak~lRP~~lWGyY~fP~CyN~~~~~~tg~C~~~~~~~Nd~L~WLw 212 (331)
T 2atm_A 133 VRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKKTRKQADWGYYGYPYCFNMSPNNLVPECDVTAMHENDKMSWLF 212 (331)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEBTCSCCCCSBTTBCSSSCCHHHHHHHHTTHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeeccCCccccCCCCcCCCCCChHHHHhcchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCcccccchhhhhhhhhhhcc----CCCCeeeEeecccCCccceeeeeeeeeecCCCC-CCchh
Q psy11740 303 SASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIK----AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKD-FLKDS 377 (563)
Q Consensus 303 ~eSTALYPSIYL~~~~l~~~~~~~fVr~RV~EA~RVa----~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~-fLsq~ 377 (563)
++||||||||||+ ..++++.+.+||++||+||+||| .++|||||+ |++|+|+.+ |||++
T Consensus 213 ~~StaLyPSIYL~-~~l~~s~~~~fV~~Rv~EA~Rva~~~~~~~pV~~Y~---------------r~~y~d~~~~fLs~~ 276 (331)
T 2atm_A 213 NNQNVLLPSVYVR-QELTPDQRIGLVQGRVKEAVRISNNLKHSPKVLSYW---------------WYVYQDETNTFLTET 276 (331)
T ss_dssp TTCSEEBCBCCCC-TTSCHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEE---------------ESEETTEEEEECCHH
T ss_pred hhcCeecceeccc-cccCCCcccccHHHHHHHHHHHHhcCCCCCceEEEe---------------eeEecCCccccccHH
Confidence 9999999999999 88888887799999999999998 468999999 999997665 99999
Q ss_pred HHHHHhhhhhhcCCCeEEEecCCCCCCcHHHhHHHHHhhhcchhhHHHHhhccch
Q psy11740 378 DMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPK 432 (563)
Q Consensus 378 DL~nTIgesaalGa~GVVIWGss~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aak 432 (563)
||++||||+|+|||+||||||+|++++|+++|++|++||+++|||||+|||+||+
T Consensus 277 DL~~TigesaalGa~GiViWGss~~~~s~~~C~~l~~Yl~~~LgPyi~nvt~aa~ 331 (331)
T 2atm_A 277 DVKKTFQEIVINGGDGIIIWGSSSDVNSLSKCKRLQDYLLTVLGPIAINVTEAVN 331 (331)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCGGGGSSHHHHHHHHHHHHHTHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHHHHhchhHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999986
No 3
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-132 Score=1025.34 Aligned_cols=335 Identities=31% Similarity=0.633 Sum_probs=320.6
Q ss_pred CCCCCCceEEEeecCcccc-ccCCCcccccccceeEeCCCCcccCCcEEEEeCC--CCCceEecCCCCccccccCCCCCC
Q psy11740 62 NAVPKEQFHVYWNVPTFQC-HQYGLNFSEVRRWGIIENENGNFRGNEIALLYDP--GVFPALLRAGGGDFVKRNGGVPQE 138 (563)
Q Consensus 62 ~~~~~~pF~v~WNVPT~~C-~k~gv~~~~L~~fgIv~N~~~~FrGq~ItIFY~~--GlyPyi~~~~~G~~~~vNGGlPQ~ 138 (563)
|+++++||.|+|||||++| ++|||+++ |+.|+||+||+++|+|++|||||++ |+||||+ .+|++ +||||||+
T Consensus 6 p~~~~~pF~v~WN~PT~~C~~~~~v~~d-l~~f~Iv~N~~~~f~G~~itIfY~~~lG~yP~~~--~~g~~--~NGGiPQ~ 80 (424)
T 2pe4_A 6 PLLPNRPFTTVWNANTQWCLERHGVDVD-VSVFDVVANPGQTFRGPDMTIFYSSQLGTYPYYT--PTGEP--VFGGLPQN 80 (424)
T ss_dssp SSBTTBSSEEEEESCHHHHHHHHCCCCC-CTTSSEECCTTCCSCCSSEEEECTTSSSCCCEEC--TTSCE--ETTSSGGG
T ss_pred CCCCCCCeEEEEcCCHHHhccccCCCCC-hhhcCceeCcccccCCCeEEEEECCCCCCCceEc--CCCCc--ccCCcCCC
Confidence 7899999999999999999 58999995 9999999999999999999999998 9999999 46766 89999999
Q ss_pred CCHHHHHHHHHhhhccCcccCCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeEEEEccccccccccccCChHHHHHH
Q psy11740 139 GDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKL 218 (563)
Q Consensus 139 gnLt~HL~ka~~DI~~~~IPd~~F~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LaVIDwE~WRPvw~rNWgsk~iYR~~ 218 (563)
|||++||+|+++||. ++||+++|+| |||||||+|||+|+||||+|+|||++
T Consensus 81 g~L~~HL~k~~~dI~-~~IP~~~f~G----------------------------LaVIDwE~WRP~w~rNW~~k~iYr~~ 131 (424)
T 2pe4_A 81 ASLIAHLARTFQDIL-AAIPAPDFSG----------------------------LAVIDWEAWRPRWAFNWDTKDIYRQR 131 (424)
T ss_dssp SCHHHHHHHHHHHHH-HHCCCTTCCS----------------------------EEEECCCSSCSSGGGCCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhCCCCCCCc----------------------------eEEEEccccccchhhcCcccHHHHHH
Confidence 999999999999999 9999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeccCCccCCCCC--CCCCCCCCccccccCC
Q psy11740 219 SRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTP--RNQKPQCTPSVRDNND 296 (563)
Q Consensus 219 S~~Lvr~~hP~ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYYgFP~CyNy~~--~~~tg~Cp~~~~~~ND 296 (563)
|++|||++||+||+++|+++|+++||+|||+||+|||+|||+|||+|+||||+||||||+++ .+|||+||+.++.+||
T Consensus 132 S~~Lv~~~hp~ws~~~v~~~A~~~FE~aAr~FM~eTLkLak~lRP~~lWGyY~fP~CyN~~~~~~~ytg~Cp~~~~~~ND 211 (424)
T 2pe4_A 132 SRALVQAQHPDWPAPQVEAVAQDQFQGAARAWMAGTLQLGRALRPRGLWGFYGFPDCYNYDFLSPNYTGQCPSGIRAQND 211 (424)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEBTCSCCCCCCCSSTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcccCCCCCCCCCCCCCChHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999987 5789999999999999
Q ss_pred ccccccccccccccccccccccCCcccc-cchhhhhhhhhhhcc-----CCCCeeeEeecccCCccceeeeeeeeeecCC
Q psy11740 297 RNHWLFSASTSLYPSLYVKQANMTEFDR-MRFMQGRLDETNRIK-----AGKPVYPFIWLQSDSSELYVCTFIWFKYFDN 370 (563)
Q Consensus 297 ~L~WLW~eSTALYPSIYL~~~~l~~~~~-~~fVr~RV~EA~RVa-----~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~ 370 (563)
+|.|||++||||||||||+ ..++++.+ .+||++||+||+||| .++|||||+ |++|.++
T Consensus 212 ~L~WLw~~StaLyPSIYL~-~~l~~s~~~~~fV~~Rv~EA~Rva~~~~~~~lPV~~Y~---------------r~~Y~~~ 275 (424)
T 2pe4_A 212 QLGWLWGQSRALYPSIYMP-AVLEGTGKSQMYVQHRVAEAFRVAVAAGDPNLPVLPYV---------------QIFYDTT 275 (424)
T ss_dssp TTHHHHHHCSSBBCBCCCB-GGGTTSSCHHHHHHHHHHHHHHHHHHTTCTTCCBCCEE---------------CSBCBTS
T ss_pred hhhhhhhhcCccceeeecc-cccCCchhhhHHHHHHHHHHHHHHhccCCCCCceEEEE---------------eeEecCc
Confidence 9999999999999999999 77887665 699999999999999 368999999 9999777
Q ss_pred CCCCchhHHHHHhhhhhhcCCCeEEEecCCCCCCcHHHhHHHHHhhhcchhhHHHHhhccchhhhcc-cccceeeee
Q psy11740 371 KDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPKMYLDD-SIDNIISIY 446 (563)
Q Consensus 371 ~~fLsq~DL~nTIgesaalGa~GVVIWGss~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aakl~lD~-~~~n~~~~~ 446 (563)
.+||||+||++||||+||+||+||||||||++++|+++|++|++||+++|||||+|||+||++|+.. |.+|+.-.-
T Consensus 276 ~~fLS~~DL~~TigesaalGa~GiViWGss~~~~s~~~C~~l~~Yl~~~LGPyi~nVt~aa~~CS~~lC~~~GrC~R 352 (424)
T 2pe4_A 276 NHFLPLDELEHSLGESAAQGAAGVVLWVSWENTRTKESCQAIKEYMDTTLGPFILNVTSGALLCSQALCSGHGRCVR 352 (424)
T ss_dssp CCBCCHHHHHTTHHHHHHTTCSEEEEECCGGGSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred cccccHHHHHHHHHHHHHcCCCeEEEecchhhcccHHHHHHHHHHHHhchhHHHHHHHHHHHHhCHHhcCCCcEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999665 999987643
No 4
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=94.46 E-value=0.0057 Score=56.87 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=41.9
Q ss_pred cccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 505 TLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+..-|.+||.|.|+--.++++.|.-.+.+||-|++.|.++++.+-|
T Consensus 107 ~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y 152 (212)
T 2qc1_B 107 TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTY 152 (212)
T ss_dssp CCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSC
T ss_pred eeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccc
Confidence 5567899999999999999999999999999999999999997643
No 5
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=94.11 E-value=0.0072 Score=56.20 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=41.0
Q ss_pred cccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 505 TLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+..-|.+||.|.|..-.++++.|.-.+ +||-|++.|.++++++-|
T Consensus 103 ~~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y 147 (204)
T 3sq6_A 103 QLALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTH 147 (204)
T ss_dssp CEEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSC
T ss_pred cEEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecc
Confidence 356789999999999999999999999 999999999999987654
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=93.98 E-value=0.0099 Score=58.04 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=42.6
Q ss_pred cccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhcc
Q psy11740 503 GNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETF 548 (563)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (563)
.|+.--|.+||.|.|..=.++++.|.-++.+||-|+++|.++.+++
T Consensus 92 ~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~ 137 (321)
T 3tlw_A 92 DVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVR 137 (321)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEE
T ss_pred cceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecc
Confidence 4567789999999999999999999999999999999999999976
No 7
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=93.42 E-value=0.012 Score=57.39 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=49.2
Q ss_pred cccccCCCCCCCCCCccccccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+++.|+.|.-- ..|+..-|.+||.|.|.-=.++++.|.-.+.+||-|+++|.++.+++-|
T Consensus 76 i~l~N~~~~~~--------~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y 135 (322)
T 3rqw_A 76 LEFINVVGSPD--------TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSY 135 (322)
T ss_dssp EEETTBSSCCE--------EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSC
T ss_pred EEEEcccCccc--------ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEccc
Confidence 45556655322 3566778999999999999999999999999999999999999997543
No 8
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=93.27 E-value=0.017 Score=57.89 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=42.0
Q ss_pred ccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
++.--|.+||.|.|..-.++++.|.-.+.+||-|++.|.++++++-|
T Consensus 105 ~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y 151 (370)
T 2bg9_A 105 MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 151 (370)
T ss_dssp SCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSC
T ss_pred cceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecc
Confidence 34567899999999999999999999999999999999999987643
No 9
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=93.20 E-value=0.024 Score=56.88 Aligned_cols=41 Identities=17% Similarity=0.470 Sum_probs=38.8
Q ss_pred cccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccc
Q psy11740 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFH 549 (563)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (563)
|.+||.|.|..-.++++.|.-.+.+||-|+++|.++++++-
T Consensus 109 v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~ 149 (370)
T 2bg9_E 109 VYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQT 149 (370)
T ss_dssp ECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESS
T ss_pred EECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeec
Confidence 89999999999999999999999999999999999999763
No 10
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=92.52 E-value=0.024 Score=56.97 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=39.7
Q ss_pred ccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 508 DIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
-|.+||.|.|..-.++++.|.-.+.+||-|+++|.++++++-|
T Consensus 109 ~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y 151 (370)
T 2bg9_B 109 LVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 151 (370)
T ss_dssp EEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSC
T ss_pred EEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccc
Confidence 3899999999999999999999999999999999999997643
No 11
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=92.41 E-value=0.016 Score=54.12 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=37.8
Q ss_pred cccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 503 GNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
-++..-|.+||.|.|..-+++++.|.-.+..||-|++.|.++++++-|
T Consensus 88 ~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y 135 (201)
T 3igq_A 88 DVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSV 135 (201)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCC
T ss_pred cceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCC
Confidence 357778999999999999999999999999999999999999987744
No 12
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=92.38 E-value=0.032 Score=56.01 Aligned_cols=43 Identities=19% Similarity=0.475 Sum_probs=39.6
Q ss_pred ccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 508 DIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
-|.+||.|.|.--.++++.|.-.+.+||-|+++|.++++++-|
T Consensus 111 ~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y 153 (369)
T 2bg9_C 111 LVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 153 (369)
T ss_dssp EECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSC
T ss_pred EEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecc
Confidence 3899999999999999999999999999999999999987643
No 13
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=92.31 E-value=0.041 Score=57.72 Aligned_cols=41 Identities=17% Similarity=0.470 Sum_probs=38.9
Q ss_pred cccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccc
Q psy11740 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFH 549 (563)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (563)
|.+||.|.|..=.++|+.|.-.+.+||-|++.|.++++++-
T Consensus 109 v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~ 149 (488)
T 4aq5_E 109 VYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQT 149 (488)
T ss_dssp BCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESS
T ss_pred EeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeec
Confidence 89999999999999999999999999999999999998764
No 14
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=91.74 E-value=0.043 Score=57.26 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=47.7
Q ss_pred cccccCCCCCCCCCCccccccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccc
Q psy11740 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFH 549 (563)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (563)
+++.|+.|.--.+++. +-.-|.+||.|.|..=.++++.|.-.+.+||-|++.|.++.+++-
T Consensus 114 i~l~N~~d~~~~~~~~------~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~ 174 (461)
T 4aq5_A 114 LVLYNNADGDFAIVHM------TKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWT 174 (461)
T ss_dssp EEESSCCCSCCTTCSS------CEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESS
T ss_pred eeeecccccccccccc------cceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccc
Confidence 4455665554344332 123689999999999999999999999999999999999998654
No 15
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=91.50 E-value=0.047 Score=57.81 Aligned_cols=41 Identities=20% Similarity=0.549 Sum_probs=38.8
Q ss_pred cccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccc
Q psy11740 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFH 549 (563)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (563)
|.+||.|.|..=.++|+.|.-.+.+||-|++.|.++++++-
T Consensus 133 V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~ 173 (522)
T 4aq5_C 133 VRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALN 173 (522)
T ss_dssp ECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETT
T ss_pred EeCCccEEEEcccccccccccccCcCCCcCceEeEEEeccc
Confidence 89999999999999999999999999999999999998754
No 16
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=91.33 E-value=0.039 Score=51.83 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=43.6
Q ss_pred cccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 501 IFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
.+.++..-|.+||.|.|.--+++|+.|.-.+..||-| +.|..+++++-|
T Consensus 100 ~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y 148 (205)
T 4aod_A 100 IFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTH 148 (205)
T ss_dssp ECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSC
T ss_pred eecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccc
Confidence 4556777899999999999999999999999999988 999999987654
No 17
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=91.27 E-value=0.043 Score=57.67 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=39.3
Q ss_pred cccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
|.+||.|.|..=.++|+.|.-.+.+||-|++.|.++.+++-|
T Consensus 134 v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y 175 (493)
T 4aq5_B 134 VQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 175 (493)
T ss_dssp ECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSC
T ss_pred EecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecC
Confidence 899999999999999999999999999999999999997643
No 18
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=89.95 E-value=0.039 Score=54.56 Aligned_cols=47 Identities=28% Similarity=0.562 Sum_probs=41.6
Q ss_pred ccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
|.+-.|.+||.|.|.-=.++|+.|.-++.+||-|++.|.++.+++-|
T Consensus 107 n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y 153 (347)
T 3rhw_A 107 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAY 153 (347)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSC
T ss_pred cEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcC
Confidence 44555789999999999999999999999999999999999987543
No 19
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=88.64 E-value=0.089 Score=49.53 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=41.2
Q ss_pred cccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 503 GNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
.++..-|.+||.|.|.--+++|+.|.-. ..||-|++.|..+++++-|
T Consensus 102 ~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y 148 (205)
T 4aoe_A 102 SDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTY 148 (205)
T ss_dssp SCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSC
T ss_pred cceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccC
Confidence 3566779999999999999999999888 6899999999999987644
No 20
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=80.48 E-value=0.27 Score=45.32 Aligned_cols=44 Identities=16% Similarity=0.419 Sum_probs=39.6
Q ss_pred cccccccCCCeeeeehhhhHhhhhc-ccCCCCCCcccchhhhhccce
Q psy11740 505 TLTDIRSDGNVSYMNFVTLKAMCTS-QLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+..-|.+||.|.|+--.++++.|.- .+.. -|++.|.++++++-|
T Consensus 100 ~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y 144 (203)
T 2bj0_A 100 DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTH 144 (203)
T ss_dssp CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSC
T ss_pred eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccc
Confidence 5667899999999999999999999 9988 999999999997754
No 21
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=77.54 E-value=0.27 Score=46.43 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=37.7
Q ss_pred ccccccccCCCeeeeehhhhHhhhh---cccCCCCCCcccchhhhhccce
Q psy11740 504 NTLTDIRSDGNVSYMNFVTLKAMCT---SQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
|+..-|.+||.|.|+--.++++.|. -.+. |++.|.++++++-|
T Consensus 113 ~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y 158 (228)
T 2wn9_A 113 PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVY 158 (228)
T ss_dssp CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSC
T ss_pred cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecc
Confidence 6778899999999999999999999 5555 99999999997644
No 22
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=76.66 E-value=0.46 Score=44.01 Aligned_cols=42 Identities=24% Similarity=0.537 Sum_probs=37.3
Q ss_pred cccccccCCCeeeeehhhhHhhhh---cccCCCCCCcccchhhhhccce
Q psy11740 505 TLTDIRSDGNVSYMNFVTLKAMCT---SQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+..-|.+||.|.|+--.++++.|. -.+. |++.|.++++++-|
T Consensus 102 ~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y 146 (211)
T 1uw6_A 102 QLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTH 146 (211)
T ss_dssp CEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSC
T ss_pred eEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccc
Confidence 677899999999999999999999 7776 99999999997754
No 23
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=73.17 E-value=2.3 Score=46.28 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=46.1
Q ss_pred ccccccccccccCChHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec
Q psy11740 198 FEHWRPVFEENFGSLDEYRKLSRRIERGRHPL-WTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYY 270 (563)
Q Consensus 198 wE~WRPvw~rNWgsk~iYR~~S~~Lvr~~hP~-ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYY 270 (563)
+=.|+|.|. .||-+. +.|. +.++.+..+|+..|+.|- -|.+.+.--+.++|++-+|||
T Consensus 296 ~id~~~~f~-~w~~~~------------~~~~~~~~~~~~~~~~~~~~~a~--~~l~~~~~~~~~~~~~vyg~f 354 (579)
T 3bul_A 296 YIDWTPFFM-TWSLAG------------KYPRILEDEVVGVEAQRLFKDAN--DMLDKLSAEKTLNPRGVVGLF 354 (579)
T ss_dssp TCCCHHHHH-HTTCCS------------CTTGGGGCTTTHHHHHHHHHHHH--HHHHHHHHHTCSCCEEEEEEE
T ss_pred hcChHHHHH-HhCCCC------------CchhhhhhhhhHHHHHHHHHHHH--HHHHHHHhCCcccceEEEEEE
Confidence 556899998 999766 3666 556678889999999875 466666677899999999987
No 24
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=73.13 E-value=2.3 Score=43.50 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=44.0
Q ss_pred ccccccccccccCChHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec
Q psy11740 198 FEHWRPVFEENFGSLDEYRKLSRRIERGRHPL-WTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYY 270 (563)
Q Consensus 198 wE~WRPvw~rNWgsk~iYR~~S~~Lvr~~hP~-ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYY 270 (563)
+=.|+|.|. -||-+. +.|. +.++.+.++|+..|+.|- =|.+.+.--+.++|++-+|||
T Consensus 48 yIDw~~ff~-~W~l~g------------~~p~il~d~~vg~ea~~l~~da~--~~l~~ii~e~~l~p~~Vyg~f 106 (331)
T 1msk_A 48 YIDWTPFFM-TWSLAG------------KYPRILEDEVVGVEAQRLFKDAN--DMLDKLSAEKTLNPRGVVGLF 106 (331)
T ss_dssp GCCCHHHHH-HTTCCS------------CTTGGGGCTTTHHHHHHHHHHHH--HHHHHHHHHTCSCCEEEEEEE
T ss_pred hcChHHHHH-HhCCCC------------CchhhhhhhhhhHHHHHHHHHHH--HHHHHHHhcCcccceEEEEEE
Confidence 334899998 899665 3566 555678889999999874 455665555789999999987
No 25
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=71.18 E-value=0.53 Score=44.85 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=42.4
Q ss_pred cccccCCCCCCCCCCccccccccccccccCCCeeeeehhhhHhhhhcccCCCCCCcccchhhhhccce
Q psy11740 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550 (563)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563)
+++.|+.|.--.+++ ++..-|.+||.|.|.--+++++.|.- |-|++.|.++++++-|
T Consensus 99 i~l~N~~~~~~~~~~------~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y 155 (230)
T 4afh_A 99 IKLFNSVDLDMTLDR------TTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVY 155 (230)
T ss_dssp EEETTCSSSSCEECT------TSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSC
T ss_pred EEEEecccccccccc------cceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccc
Confidence 345566554333322 23346899999999999999999976 9999999999987655
No 26
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.40 E-value=3.1 Score=38.28 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=64.2
Q ss_pred cchhhhhhhhhhhcc------CCCCeeeEeecccCCccceeeeeeeeeecCCCCCCchhHHHHHhhhhhhcCCCeEEEec
Q psy11740 325 MRFMQGRLDETNRIK------AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWG 398 (563)
Q Consensus 325 ~~fVr~RV~EA~RVa------~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~fLsq~DL~nTIgesaalGa~GVVIWG 398 (563)
..|..+-.+||++.| ..+++++|. +++.|. +...| .++-|+.++++..|.+ -.|+||
T Consensus 33 p~F~~gs~~~Al~~A~~~~k~e~K~LlVyL--hs~~~~-~~~~f-------~~~~L~~~~V~~~l~~-------nfV~w~ 95 (178)
T 2ec4_A 33 PVFFIGSLEAAFQEAFYVKARDRKLLAIYL--HHDESV-LTNVF-------CSQMLCAESIVSYLSQ-------NFITWA 95 (178)
T ss_dssp CCCCCSCHHHHHHTTTSSCTTTCCEEEEEE--ECSSCS-HHHHH-------HHHTTTCHHHHHHHHH-------TEEEEE
T ss_pred CCeeeCCHHHHHHHHHhhhhhhCcEEEEEE--eCCCCc-cHHHH-------HHHhcCCHHHHHHHHc-------CEEEEE
Confidence 356678889999998 357898887 444431 11111 1235888999998874 599999
Q ss_pred CCCCCCcHHHhHHHHHhhhcchhhHHHHhhccchhhhcccccceeeeeecCCccEEEeee
Q psy11740 399 SSHDVNTERKCRSLLNYLHNTLGPAVKTVRRTPKMYLDDSIDNIISIYTADDVPFIIIYY 458 (563)
Q Consensus 399 ss~d~~S~~~C~~L~~Yl~~tLGPyI~nVt~aakl~lD~~~~n~~~~~~~~~~~~~~~~~ 458 (563)
-+ +.+.+.=..+..|+...+|+-+.+. +.++..+..|++.+.-
T Consensus 96 ~d--v~~~e~~~~~~~~~~~~~g~~~a~~---------------~~~~~~~~~P~l~ii~ 138 (178)
T 2ec4_A 96 WD--LTKDSNRARFLTMCNRHFGSVVAQT---------------IRTQKTDQFPLFLIIM 138 (178)
T ss_dssp EE--CCSHHHHHHHHHHHHHHTCHHHHHH---------------HHHSCSTTCSEEEEEC
T ss_pred Ee--CCCchhhhhhhhhhhhhhHHHHHHH---------------HhhcCCCCCCeEEEEE
Confidence 53 3344444567788888888765432 1223456678777653
No 27
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=47.93 E-value=10 Score=38.42 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee
Q psy11740 234 AVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGY 269 (563)
Q Consensus 234 ~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGY 269 (563)
..-|.+=.+||++.++|+++|+....-|||+ .|.+
T Consensus 60 ~aGQt~G~~FE~~~~~fl~~tF~~l~hlRPG-~W~v 94 (286)
T 1fiu_A 60 LPGQTSGNAFEAICSEFVQSAFEKLQHIRPG-DWNV 94 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGTTTSCS-CEEE
T ss_pred CCcccccHHHHHHHHHHHHHHhHHhcCCCCC-Ccee
Confidence 3458889999999999999999999999996 6887
No 28
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=42.50 E-value=7.7 Score=40.19 Aligned_cols=58 Identities=24% Similarity=0.542 Sum_probs=40.4
Q ss_pred ccccccccccccCChHHHHHHHHHHHHhhCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec
Q psy11740 198 FEHWRPVFEENFGSLDEYRKLSRRIERGRHPL------WTYSAVNQEASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYY 270 (563)
Q Consensus 198 wE~WRPvw~rNWgsk~iYR~~S~~Lvr~~hP~------ws~~~v~~~Ak~eFE~AAK~FM~eTL~LgK~LRP~alWGYY 270 (563)
+=.|+|.|. -||-+. +.|. +.++.+.++|+..|+.|- -|.+.+.--+.++|++-+|||
T Consensus 49 yIDw~~fF~-~W~l~g------------~~p~~g~~~il~d~~vg~ea~~l~~da~--~ml~~ii~e~~l~pr~Vyg~f 112 (355)
T 2o2k_A 49 YIDWKPFFD-VWQLRG------------KYPNRGFPKIFNDKTVGGEARKVYDDAH--NMLNTLISQKKLRARGVVGFW 112 (355)
T ss_dssp TCCCHHHHH-HHHHHH------------HSCCTTCCGGGGCC---CHHHHHHHHHH--HHHHHHHHTTCSEEEEEEEEE
T ss_pred hCCcHHHHH-HhCCCC------------CCCccccchhhhhhhhHHHHHHHHHHHH--HHHHHHHhCCCccceEEEEEE
Confidence 344889986 787544 3676 666688899999999874 455555555789999999987
No 29
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=38.37 E-value=22 Score=34.69 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCCeeeEeecccCCccceeeeeeeeeecCCCCC-CchhH---HHHHhhhhhhcCCCeEEEec-CCCCCCcHHHhHHHHH
Q psy11740 341 GKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDSD---MINALIIPKKMGTNGVIIWG-SSHDVNTERKCRSLLN 414 (563)
Q Consensus 341 ~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~D---L~nTIgesaalGa~GVVIWG-ss~d~~S~~~C~~L~~ 414 (563)
..||++-+ |+.- .+| +|++| |..-|...+++|++|||+=- +.+..-..+.|+.|-+
T Consensus 54 ~ipV~vMI---------------RPR~---GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~ 114 (224)
T 2bdq_A 54 GISVAVMI---------------RPRG---GNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLP 114 (224)
T ss_dssp TCEEEEEC---------------CSSS---SCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHH
T ss_pred CCceEEEE---------------CCCC---CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHH
Confidence 57888877 7643 334 56555 55678889999999999832 2222334677777754
No 30
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=34.93 E-value=28 Score=34.67 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=38.3
Q ss_pred CCCCeeeEeecccCCccceeeeeeeeeecCCCCC-CchhH---HHHHhhhhhhcCCCeEEEec-CCCCCCcHHHhHHHHH
Q psy11740 340 AGKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDSD---MINALIIPKKMGTNGVIIWG-SSHDVNTERKCRSLLN 414 (563)
Q Consensus 340 ~~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~D---L~nTIgesaalGa~GVVIWG-ss~d~~S~~~C~~L~~ 414 (563)
...||++-+ |+.- .+| +|++| |..-|...+++|++|||+=- +.+..-..+.|+.|-+
T Consensus 50 ~~ipv~vMI---------------RPR~---GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~ 111 (256)
T 1twd_A 50 VTIPVHPII---------------RPRG---GDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMA 111 (256)
T ss_dssp CCSCEEEBC---------------CSSS---SCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHH
T ss_pred cCCceEEEE---------------CCCC---CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHH
Confidence 357888877 7643 334 56555 55678889999999999832 2223335678887754
Q ss_pred h
Q psy11740 415 Y 415 (563)
Q Consensus 415 Y 415 (563)
-
T Consensus 112 ~ 112 (256)
T 1twd_A 112 A 112 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=27.45 E-value=58 Score=32.83 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=36.3
Q ss_pred CCCeeeEeecccCCccceeeeeeeeeecCCCCC-CchhH---HHHHhhhhhhcCCCeEEEec-CCCCCCcHHHhHHHHH
Q psy11740 341 GKPVYPFIWLQSDSSELYVCTFIWFKYFDNKDF-LKDSD---MINALIIPKKMGTNGVIIWG-SSHDVNTERKCRSLLN 414 (563)
Q Consensus 341 ~~PVypY~~~~~~~~~~y~~~f~r~~Y~d~~~f-Lsq~D---L~nTIgesaalGa~GVVIWG-ss~d~~S~~~C~~L~~ 414 (563)
..||++-+ |+. ..+| +|+.| |..-|...+++||+|||+=- +.+..-..+.|+.|-.
T Consensus 89 ~ipV~vMI---------------RPR---gGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 89 QIPVFVMI---------------RPR---GGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp CSCEEEEC---------------CSS---SSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred CCCeEEEE---------------ecC---CCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 47877776 654 2344 55544 55688899999999999852 1222234577777755
No 32
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=26.04 E-value=1.9e+02 Score=22.17 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHH---------HHHHHHHHHHHHH
Q psy11740 213 DEYRKLSRRIERGRHPLWTYSAVNQEA---------SVRFEQAAKDFMF 252 (563)
Q Consensus 213 ~iYR~~S~~Lvr~~hP~ws~~~v~~~A---------k~eFE~AAK~FM~ 252 (563)
-+|.+.-++-+++.||+++..++.+.. +..|++.|+.-.+
T Consensus 12 ~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l~eK~~y~~~A~~~k~ 60 (73)
T 1wxl_A 12 MLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 60 (73)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 567777888899999999999887776 5556666654443
No 33
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=25.05 E-value=1.4e+02 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy11740 212 LDEYRKLSRRIERGRHPLWTYSAVNQEASVRF 243 (563)
Q Consensus 212 k~iYR~~S~~Lvr~~hP~ws~~~v~~~Ak~eF 243 (563)
--+|.+.-++-+++.||+++..+|.+.+.+.+
T Consensus 10 f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~W 41 (79)
T 3u2b_C 10 FMVWSQIERRKIMEQSPDMHNAEISKRLGKRW 41 (79)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHH
Confidence 35678888888999999999999887665544
No 34
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=22.62 E-value=2.4e+02 Score=22.47 Aligned_cols=43 Identities=14% Similarity=-0.038 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHhhCCCCCHHHHHHHH-----------HHHHHHHHHHHHHH
Q psy11740 211 SLDEYRKLSRRIERGRHPLWTYSAVNQEA-----------SVRFEQAAKDFMFS 253 (563)
Q Consensus 211 sk~iYR~~S~~Lvr~~hP~ws~~~v~~~A-----------k~eFE~AAK~FM~e 253 (563)
.--+|.+.-++-+++.||.++..+|.+.. ++.|++.|+.-.++
T Consensus 24 af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~ 77 (87)
T 2e6o_A 24 AFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEE 77 (87)
T ss_dssp HHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 34577888888899999999999887666 44555555544443
No 35
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.50 E-value=1.9e+02 Score=22.58 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHhhCCCCCHHHHHHHH-----------HHHHHHHHHHHHH
Q psy11740 211 SLDEYRKLSRRIERGRHPLWTYSAVNQEA-----------SVRFEQAAKDFMF 252 (563)
Q Consensus 211 sk~iYR~~S~~Lvr~~hP~ws~~~v~~~A-----------k~eFE~AAK~FM~ 252 (563)
.--+|.+.-++-+++.||.++..+|.+.+ ++.|++.|+.-.+
T Consensus 14 af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 66 (82)
T 1wz6_A 14 AFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 33577888888899999999988887665 4556655554433
Done!