RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11740
(563 letters)
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel,
glycosidase family 56, allergen, hydrolase; 1.60A {Apis
mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Length = 350
Score = 342 bits (878), Expect = e-114
Identities = 152/375 (40%), Positives = 208/375 (55%), Gaps = 42/375 (11%)
Query: 60 PENAVPKEQFHVYWNVPTFQCHQYGLNFSEV-RRWGIIENENGNFRGNEIALLYDPGVFP 118
P+N +F+VYWNVPTF CH+YGL F EV ++GI++N FRG EIA+LYDPG+FP
Sbjct: 2 PDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFP 61
Query: 119 ALLRAGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTA 178
ALL+ G+ V RNGGVPQ G+LT+H+Q H++ IPD +F G
Sbjct: 62 ALLKDPNGNVVARNGGVPQLGNLTKHLQVFRDHLI-NQIPDKSFPG-------------- 106
Query: 179 KFKSVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQE 238
+G+IDFE WRP+F +N+ SL Y+KLS + R HP W V QE
Sbjct: 107 --------------VGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQE 152
Query: 239 ASVRFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRN 298
A RFE+ + FM +L +++RP A WGYY +P C+N TP QC + ND+
Sbjct: 153 AKRRFEKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKM 212
Query: 299 HWLFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELY 358
WLF + L PS+Y++ N+T +R+ + GR+ E RI Q +S
Sbjct: 213 SWLFESEDVLLPSVYLRW-NLTSGERVGLVGGRVKEALRIAR----------QMTTSRKK 261
Query: 359 VCTFIWFKYFDNKD-FLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLH 417
V + W+KY D +D L +D+ L +G +G IIWGSS D+NT+ KC YL+
Sbjct: 262 VLPYYWYKYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYLN 321
Query: 418 NTLGPAVKTVRRTPK 432
N LGPAVK +
Sbjct: 322 NELGPAVKRIALNNN 336
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES;
2.00A {Vespula vulgaris}
Length = 331
Score = 340 bits (874), Expect = e-114
Identities = 141/373 (37%), Positives = 197/373 (52%), Gaps = 50/373 (13%)
Query: 62 NAVPKEQFHVYWNVPTFQCHQYGLNFSEVRRWGIIENENGNFRGNEIALLYDPGVFPALL 121
+ PK F++YWNVPTF CHQY L F EV + I N +F+G++IA+ YDPG FPALL
Sbjct: 1 SERPKRVFNIYWNVPTFMCHQYDLYFDEVTNFNIKRNSKDDFQGDKIAIFYDPGEFPALL 60
Query: 122 RAGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFK 181
G + KRNGGVPQEG++T H+Q ++ K+ P+ FSG
Sbjct: 61 SLKDGKYKKRNGGVPQEGNITIHLQKFIENLD-KIYPNRNFSG----------------- 102
Query: 182 SVRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASV 241
+G+IDFE WRP+F +N+G++ ++ S + R HP W + EAS
Sbjct: 103 -----------IGVIDFERWRPIFRQNWGNMKIHKNFSIDLVRNEHPTWNKKXIELEASK 151
Query: 242 RFEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHWL 301
RFE+ A+ FM +L L +K R +A WGYYG+P CFN +P N P+C + ND+ WL
Sbjct: 152 RFEKYARFFMEETLKLAKKTRKQADWGYYGYPYCFNMSPNNLVPECDVTAMHENDKMSWL 211
Query: 302 FSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAG----KPVYPFIWLQSDSSEL 357
F+ L PS+YV+Q +T R+ +QGR+ E RI V
Sbjct: 212 FNNQNVLLPSVYVRQE-LTPDQRIGLVQGRVKEAVRISNNLKHSPKVLS----------- 259
Query: 358 YVCTFIWFKYFDNKD-FLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYL 416
+ W+ Y D + FL ++D+ G +G+IIWGSS DVN+ KC+ L +YL
Sbjct: 260 ----YWWYVYQDETNTFLTETDVKKTFQEIVINGGDGIIIWGSSSDVNSLSKCKRLQDYL 315
Query: 417 HNTLGPAVKTVRR 429
LGP V
Sbjct: 316 LTVLGPIAINVTE 328
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 318 bits (817), Expect = e-104
Identities = 102/378 (26%), Positives = 163/378 (43%), Gaps = 55/378 (14%)
Query: 64 VPKEQFHVYWNVPTFQC-HQYGLNFSEVRRWGIIENENGNFRGNEIALLYDPGVFPALLR 122
+P F WN T C ++G++ +V + ++ N FRG ++ + Y +
Sbjct: 8 LPNRPFTTVWNANTQWCLERHGVDV-DVSVFDVVANPGQTFRGPDMTIFYSSQLGTYPYY 66
Query: 123 AGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKS 182
G+ V GG+PQ L H+ ++ IP P FSG
Sbjct: 67 TPTGEPV--FGGLPQNASLIAHLARTFQDIL-AAIPAPDFSG------------------ 105
Query: 183 VRARVSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASVR 242
L +ID+E WRP + N+ + D YR+ SR + + +HP W V A +
Sbjct: 106 ----------LAVIDWEAWRPRWAFNWDTKDIYRQRSRALVQAQHPDWPAPQVEAVAQDQ 155
Query: 243 FEQAAKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPR--NQKPQCTPSVRDNNDRNHW 300
F+ AA+ +M +L L R LRP+ WG+YGFP C+NY N QC +R ND+ W
Sbjct: 156 FQGAARAWMAGTLQLGRALRPRGLWGFYGFPDCYNYDFLSPNYTGQCPSGIRAQNDQLGW 215
Query: 301 LFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGK-----PVYPFIWLQSDSS 355
L+ S +LYPS+Y+ ++Q R+ E R+ PV P
Sbjct: 216 LWGQSRALYPSIYMPAVLEGTGKSQMYVQHRVAEAFRVAVAAGDPNLPVLP--------- 266
Query: 356 ELYVCTFIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNY 415
++ Y FL ++ ++L G GV++W S + T+ C+++ Y
Sbjct: 267 ------YVQIFYDTTNHFLPLDELEHSLGESAAQGAAGVVLWVSWENTRTKESCQAIKEY 320
Query: 416 LHNTLGPAVKTVRRTPKM 433
+ TLGP + V +
Sbjct: 321 MDTTLGPFILNVTSGALL 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 3e-06
Identities = 59/409 (14%), Positives = 114/409 (27%), Gaps = 114/409 (27%)
Query: 195 IIDFEHWRPVF--EENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASVRF--EQAAKDF 250
+ D + + EE +D + WT + +E +F E ++
Sbjct: 38 VQDMP--KSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 251 MFSSLVLLRKLR--------PKAKWGYYGFPLCFN----YTPRN-QKPQCTPSVRDNNDR 297
F L+ ++ + L +N + N + Q +R
Sbjct: 92 KF----LMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQ---- 142
Query: 298 NHWLFSASTSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSD--SS 355
L + + + G +GK W+ D S
Sbjct: 143 --ALLELRPAKNVLID-------------GVLG---------SGKT-----WVALDVCLS 173
Query: 356 ELYVCTF----IWF---KYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERK 408
C W + L+ M+ L+ ++ N S H N + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLY--QIDPNWTS--RSDHSSNIKLR 226
Query: 409 CRSLLNYLHNTLGPAVKTVRRTPKMYLDDSIDNIISIYTADDVPF---IIIYYRNIILLS 465
S+ L L + L + N+ + + I++ R +
Sbjct: 227 IHSIQAELRRLL-----KSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 466 LFILVESFVYVLLSENP-------------LYLSNSLDDLP----AGTPYN-TIFGNTLT 507
F+ + ++ L + YL DLP P +I ++
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 508 D--IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHHLKLF 554
D D N ++N L + S L+ E+ + F L +F
Sbjct: 339 DGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVF 381
Score = 37.9 bits (87), Expect = 0.009
Identities = 71/537 (13%), Positives = 133/537 (24%), Gaps = 209/537 (38%)
Query: 1 MEVRFNSQR-KLFSIIGII-KVEVDQMSFPGMEALKTAYGGVTVSSTLNPNNN----GQ- 53
M + QR +L++ + K V ++ L+ A L P N G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQAL------LELRPAKNVLIDGVL 159
Query: 54 GFG----------YYEPENAVPKEQFHVYW------NVPTFQ-------CHQYGLNFSEV 90
G G Y+ + + F ++W N P +Q N++
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 91 --------RRWGIIENENGNF---RGNEIALL-----YDPGVFPA-------LL------ 121
R I+ E + E LL + + A LL
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 122 --RAGGGDFVKRNGGVPQEGDLTQHMQTLE--AHVVGKLIPD-P--AFSGELYFISFIDH 174
LT + + D P + +S I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-- 333
Query: 175 QLTAKFKSVRARVSLSTRLGIIDFEHWRPVFEENFG-----SLD-----EYRKL------ 218
+ A +++W+ V + SL+ EYRK+
Sbjct: 334 --AESIRDGLAT-----------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 219 --------SRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFSSLV-------------L 257
+ + +W + SLV +
Sbjct: 381 FPPSAHIPTILLSL----IWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 258 LRKLRPKAK---------WGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHW---LFSA- 304
+L+ K + +Y P F+ P D +H L +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQYFYSHIGHHLKNIE 485
Query: 305 ---STSLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELYVCT 361
+L+ ++ D RF++ ++ + + +L
Sbjct: 486 HPERMTLFRMVF--------LD-FRFLEQKI-----RHDSTAWNASGSILNTLQQLK--- 528
Query: 362 FIWFKYFDNKDFLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHN 418
Y K ++ D+D ER ++L++L
Sbjct: 529 ----FY---KPYICDNDPKY------------------------ERLVNAILDFLPK 554
Score = 36.8 bits (84), Expect = 0.024
Identities = 59/375 (15%), Positives = 101/375 (26%), Gaps = 115/375 (30%)
Query: 204 VFEENFGSL-----DEYRKLSRRIER---GRHPLWTYSAVNQEASV-RFEQAAKDFMFSS 254
V N+ L E R+ S R L+ + V + +V R + +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ------PYLK 139
Query: 255 L-VLLRKLRPKAKWGYYGFPLC-----FNYTPRNQKPQCTPSVRDNNDRNHWLFSASTSL 308
L L +LRP G + K QC + + WL +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-----MDFKIFWL-NLKNCN 193
Query: 309 YPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSEL-----YV-CTF 362
P ++ + R D ++ IK +Q++ L Y C
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYENCLL 248
Query: 363 I----W----FKYFDNK-DFL---KDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCR 410
+ + F+ L + + + L T I T + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL----SAATTTHISLDHHSMTLTPDEVK 304
Query: 411 SLL-NYLHNTLG--P--AVKT-----------VRRTP------KMYLDDSIDNIISI--- 445
SLL YL P + T +R K D + II
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 446 ----------YTA-----DDVPFIIIYYRNI--ILLSLF-----------ILVESFVYVL 477
+ +I ILLSL ++ + Y L
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSA--------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 478 LSENPLYLSNSLDDL 492
+ + P + S+ +
Sbjct: 417 VEKQPKESTISIPSI 431
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 46.2 bits (110), Expect = 1e-05
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 8/66 (12%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
L N + GN + DG V Y FP D +
Sbjct: 76 LEFINVVGSPD--------TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFV 127
Query: 543 VTMETF 548
+ +E F
Sbjct: 128 LELEPF 133
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 45.2 bits (107), Expect = 4e-05
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ N + N L I +DG V Y ++L C L ++P D +C
Sbjct: 90 TFFPNEKQ----AYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCS 145
Query: 543 VTMETF 548
+ + ++
Sbjct: 146 IDLASY 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 73/430 (16%), Positives = 121/430 (28%), Gaps = 139/430 (32%)
Query: 176 LTAKFKSVRARVSLSTRLGII------DFEHWRPVFEENFGSLDE-------------YR 216
LT S+ + + T I F P E F + DE Y
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 217 KLSRRIERGRHPLWTYSAVNQEASVRFEQAAKDFMFS----SLV--LLR----KLRPKAK 266
+S +E + + V FE ++ +L LL+ L +
Sbjct: 68 -VSSLVEPSKVG--QFDQVLNLCLTEFEN---CYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 267 W--GYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHWLFSASTSLYPSLYVK---QANMTE 321
Y + P ++K S LF A L Q N +
Sbjct: 122 LIKNYITARIMAK-RPFDKKS---NSA---------LFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 322 -FDRMRFMQGRLDETNRIKAGKP-VYPFIW-----LQSDSSELYVCTFIWFKYFDNKDFL 374
F+ +R L +T V I L ++ + + ++L
Sbjct: 169 YFEELR----DLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 375 KDSDMI---NALI-IPKKMGTNGVIIWGSSHDVNTERKCRSLLNYL--HNTLGPAVKTVR 428
++ + L+ IP GVI L +Y+ LG
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVI---------------QLAHYVVTAKLLG------- 257
Query: 429 RTPKMYLDDS------IDNIIS---IYTADDVP-FIIIYYRNIILLSLFILVESF-VYVL 477
TP +++ I D F + + I +L FI V + Y
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPN 316
Query: 478 LSENPLYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQL------ 531
S P L +SL++ G P S M +++ + Q+
Sbjct: 317 TSLPPSILEDSLEN-NEGVP------------------SPM--LSISNLTQEQVQDYVNK 355
Query: 532 --SHFPRDEH 539
SH P +
Sbjct: 356 TNSHLPAGKQ 365
Score = 28.5 bits (63), Expect = 8.8
Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 62/190 (32%)
Query: 68 QFHVYWNVPTFQCHQYGLNFSEVRRW---------GII-------ENENGNFRGNE---I 108
Q Y G E+R + G++ + +F + I
Sbjct: 245 QLAHYVVT----AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 109 ALLYDPGV-----FP--ALLRAGGGDFVKRNGGVP---------QEGDLTQHMQTLEAHV 152
+L+ GV +P +L + D ++ N GVP + + ++ +H+
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 153 -VGKLI-------PDPAF--SG---ELYFISFIDHQLTAKFKSVRARVSLSTRLGIIDFE 199
GK + SG LY ++ + A ++R+ S R
Sbjct: 361 PAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER------- 412
Query: 200 HWRPVFEENF 209
+ F F
Sbjct: 413 --KLKFSNRF 420
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 41.9 bits (99), Expect = 2e-04
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETF 548
+ DG V Y+ + + + D + +
Sbjct: 89 VVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVR 133
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 42.3 bits (100), Expect = 2e-04
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 504 NTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETF 548
+ DG V Y+ + + + +P D + +
Sbjct: 93 VVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVR 137
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N+ D A + T + G++++ K+ C ++HFP DE C
Sbjct: 91 VVLYNNADGDFAIVKF------TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCS 144
Query: 543 VTME--TFHHLKLFLVSED 559
+ + T+ + + E
Sbjct: 145 MKLGTRTYDGSAVAINPES 163
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 36.6 bits (84), Expect = 0.023
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N++D Y + + +DG++ ++ ++ C +++FP D C
Sbjct: 89 VVLENNVDGQFEVAYYANVL------VYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCS 142
Query: 543 VTMETFHH----LKLFLVSEDG 560
+ + + + L L +E+G
Sbjct: 143 LVFRSQTYNAHEVNLQLSAEEG 164
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 36.0 bits (83), Expect = 0.028
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N+ D T + ++ G VS+ ++ CT ++ +FP D C
Sbjct: 90 IVLMNNNDGSFEITLH------VNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCT 143
Query: 543 VTMETFHH 550
+ +++ +
Sbjct: 144 MVFKSYTY 151
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 36.0 bits (83), Expect = 0.030
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N+ D + +R +G V+++ ++ C + +FP D C
Sbjct: 92 IVLQNNNDGQYNVAYF------CNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCS 145
Query: 543 VTMETFHH 550
+ ++
Sbjct: 146 LKFTALNY 153
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 35.6 bits (82), Expect = 0.036
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N++D Y + + +DG++ ++ ++ C +++FP D C
Sbjct: 89 VVLENNVDGQFEVAYYANVL------VYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCS 142
Query: 543 VTMETFHH 550
+ + +
Sbjct: 143 LVFRSQTY 150
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 34.8 bits (80), Expect = 0.067
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
L L N+ D A + + G + + K+ C ++HFP D+ C
Sbjct: 90 LVLYNNADGDFAIVHMTKLL------LDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCT 143
Query: 543 VTM--ETFHHLKLFLVSED 559
+ + T+ K+ + E
Sbjct: 144 MKLGIWTYDGTKVSISPES 162
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 34.4 bits (78), Expect = 0.11
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTMETFHH 550
+R +G V+++ ++ C + +FP D C + ++
Sbjct: 133 VRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 34.3 bits (78), Expect = 0.12
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
+ L N+ D T + ++ G VS+ ++ CT ++ +FP D C
Sbjct: 114 IVLMNNNDGSFEITLH------VNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCT 167
Query: 543 VT 544
+
Sbjct: 168 MV 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 107 EIAL-LYDPGVFPAL-LRA 123
+ +L LY PAL ++A
Sbjct: 26 QASLKLYADDSAPALAIKA 44
Score = 29.5 bits (65), Expect = 1.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 423 AVKTVRRTPKMYLDDS 438
A+K ++ + K+Y DDS
Sbjct: 21 ALKKLQASLKLYADDS 36
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 32.5 bits (74), Expect = 0.24
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTDIRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQ 542
L N++ TP + SDG V YM + + C C+
Sbjct: 87 LAAYNAISKPEVLTPQLAR-------VVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCR 138
Query: 543 VT 544
+
Sbjct: 139 IK 140
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 32.3 bits (73), Expect = 0.42
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 509 IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTM--ETFHHLKLFLVSED 559
+ G + + K+ C ++HFP D+ C + + T+ K+ + E
Sbjct: 134 LDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES 186
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 31.0 bits (70), Expect = 0.71
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 492 LPAGTPYNTIFGNTLTD-----IRSDGNVSYMNFVTLKAMCTSQLSHFPRDEHECQVTME 546
+P YN I + + S G+V Y+ + + C C++
Sbjct: 85 VPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFG 143
Query: 547 --TFHHLKLFLVSEDG 560
T H +L L ++
Sbjct: 144 SWTHHSRELDLQMQEA 159
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 483 LYLSNSLDDLPAGTPYNTIFGNTLTD-----IRSDGNVSYMNFVTLKAMCTSQLSHFPRD 537
S + P T Y++ + + DG+V ++ L MC +
Sbjct: 87 FRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPT-GVDSEE 145
Query: 538 EHECQVT 544
C V
Sbjct: 146 GATCAVK 152
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double
helix, restriction endonuclease, restriction-modifiction
systems, hydrolase; HET: DNA; 1.60A {Neisseria
gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Length = 286
Score = 29.7 bits (66), Expect = 2.3
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 213 DEYRKLSRRIERGRHPLWTYSAVN-----QEASVRFEQAAKDFMFSSLVLLRKLRPKAKW 267
D S I +G L V+ Q + FE +F+ S+ L+ +RP W
Sbjct: 34 DGSNTRSFNIAKGIADLLHSETVSERLPGQTSGNAFEAICSEFVQSAFEKLQHIRP-GDW 92
Query: 268 GYY 270
Sbjct: 93 NVK 95
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 29.3 bits (65), Expect = 3.2
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 102 NFRGNEIALLYDPGVFPALLRAGGGDFVKRNGGVPQEGDLTQHMQTLEAHVVGKLI---- 157
+ NE+ ++ GVF A + GV + ++ +E + L+
Sbjct: 83 SLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEV 142
Query: 158 ---PDPAFSGELYFISFIDHQLTAKFKSVR 184
F E FI + L + +++
Sbjct: 143 THADIDIFDREARFIESVMEPLRQRLTALK 172
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 28.9 bits (65), Expect = 4.6
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 88 SEVRRWGIIENENGNFRGNEI------ALLYDPGVF----PALLRAGGGD 127
+ +I +++G F +L D + P LL +G D
Sbjct: 124 APTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIAD 173
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 28.6 bits (64), Expect = 5.7
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 146 QTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRARVSL 189
V PD + + + A ++++ R+ +
Sbjct: 262 SQFTLTVPA--RPDKTLTIR---KWTLLPGVDAATRTLQLRLEV 300
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial
endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis
SP} PDB: 3atg_A
Length = 245
Score = 28.0 bits (63), Expect = 7.8
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 41 TVSSTL----NPNNNGQGFGYYEPENAVPKEQFHVY 72
V +L Y P+ + FH +
Sbjct: 136 LVHGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTF 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,841,328
Number of extensions: 540152
Number of successful extensions: 1067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 41
Length of query: 563
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 464
Effective length of database: 3,937,614
Effective search space: 1827052896
Effective search space used: 1827052896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.2 bits)