RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11740
         (563 letters)



>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 321

 Score =  332 bits (854), Expect = e-111
 Identities = 149/360 (41%), Positives = 202/360 (56%), Gaps = 42/360 (11%)

Query: 68  QFHVYWNVPTFQCHQYGLNFSEVRR-WGIIENENGNFRGNEIALLYDPGVFPALLRAGGG 126
           +F+VYWNVPTF CH+YGL F EV   +GI++N    FRG EIA+LYDPG+FPALL+   G
Sbjct: 1   EFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNG 60

Query: 127 DFVKRNGGVPQEGDLTQHMQTLEAHVVGKLIPDPAFSGELYFISFIDHQLTAKFKSVRAR 186
           + V RNGGVPQ G+LT+H+Q    H++   IPD +F G                      
Sbjct: 61  NVVARNGGVPQLGNLTKHLQVFRDHLI-NQIPDKSFPG---------------------- 97

Query: 187 VSLSTRLGIIDFEHWRPVFEENFGSLDEYRKLSRRIERGRHPLWTYSAVNQEASVRFEQA 246
                 +G+IDFE WRP+F +N+ SL  Y+KLS  + R  HP W    V QEA  RFE+ 
Sbjct: 98  ------VGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKY 151

Query: 247 AKDFMFSSLVLLRKLRPKAKWGYYGFPLCFNYTPRNQKPQCTPSVRDNNDRNHWLFSAST 306
            + FM  +L   +++RP A WGYY +P C+N TP     QC  +    ND+  WLF +  
Sbjct: 152 GQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMSWLFESED 211

Query: 307 SLYPSLYVKQANMTEFDRMRFMQGRLDETNRIKAGKPVYPFIWLQSDSSELYVCTFIWFK 366
            L PS+Y++  N+T  +R+  + GR+ E  RI               +S   V  + W+K
Sbjct: 212 VLLPSVYLRW-NLTSGERVGLVGGRVKEALRIARQ----------MTTSRKKVLPYYWYK 260

Query: 367 YFDNKD-FLKDSDMINALIIPKKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVK 425
           Y D +D  L  +D+   L     +G +G IIWGSS D+NT+ KC     YL+N LGPAVK
Sbjct: 261 YQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYLNNELGPAVK 320


>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
           gonorrhoeae [TaxId: 485]}
          Length = 286

 Score = 28.0 bits (62), Expect = 3.0
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 237 QEASVRFEQAAKDFMFSSLVLLRKLRPKAKW 267
           Q +   FE    +F+ S+   L+ +RP   W
Sbjct: 63  QTSGNAFEAICSEFVQSAFEKLQHIRP-GDW 92


>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
           {Arthrobacter sp., tad20 [TaxId: 1667]}
          Length = 374

 Score = 27.9 bits (61), Expect = 3.1
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 5/40 (12%)

Query: 387 KKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLGPAVKT 426
              G  G + W  S D N       L+  + +    A   
Sbjct: 332 VSKGLGGGMWWELSGDRN-----GELVGAMSDKFRAAAPG 366


>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 507

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 7/68 (10%), Positives = 15/68 (22%)

Query: 46  LNPNNNGQGFGYYEPENAVPKEQFHVYWNVPTFQCHQYGLNFSEVRRWGIIENENGNFRG 105
           L+ +    G         V     +             G  F++          N N + 
Sbjct: 7   LSADGYALGSAMNNLAGCVVSPDVNTAQFTDCLLGGPLGGYFADSNAGFTETISNFNPKD 66

Query: 106 NEIALLYD 113
           +   +   
Sbjct: 67  DWSRVFLK 74


>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
           fumigatus [TaxId: 5085]}
          Length = 333

 Score = 27.1 bits (59), Expect = 6.7
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 387 KKMGTNGVIIWGSSHDVNTERKCRSLLNYLHNTLG 421
           K +G  G + W SS D        SL+  + N LG
Sbjct: 274 KSLGLGGAMWWDSSSDKTGS---DSLITTVVNALG 305


>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
           ATP synthase {Spinach (Spinacia oleracea), chloroplast
           [TaxId: 3562]}
          Length = 276

 Score = 26.8 bits (59), Expect = 7.3
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 203 PVFEENFGSLDEYRKLSRRI-ERGRHPLWTYSAVNQEASV 241
            +        D    LS  +   G  P     A+N   SV
Sbjct: 234 YIPTNVISITDGQIFLSADLFNAGIRP-----AINVGISV 268


>d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 126

 Score = 26.1 bits (56), Expect = 7.6
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 4/81 (4%)

Query: 17 IIKVEVDQMSFPGMEALKTAYGGVTVSSTLNP----NNNGQGFGYYEPENAVPKEQFHVY 72
          I  +E  Q+  P      T+YG +   +            QGFG           Q  + 
Sbjct: 3  IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62

Query: 73 WNVPTFQCHQYGLNFSEVRRW 93
                Q H   L  +E    
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQ 83


>d1u1ha2 c.1.22.2 (A:396-760)
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase MetE {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 365

 Score = 26.6 bits (58), Expect = 8.2
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 2/96 (2%)

Query: 419 TLGPAVKTVRRTPKMYLDDSID--NIISIYTADDVPFIIIYYRNIILLSLFILVESFVYV 476
            L   +   +     YLD ++    I +    D          +     +  +++    V
Sbjct: 213 ALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADV 272

Query: 477 LLSENPLYLSNSLDDLPAGTPYNTIFGNTLTDIRSD 512
           +  EN       L     G  Y    G  + DI S 
Sbjct: 273 ITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP 308


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,197,183
Number of extensions: 107291
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 10
Length of query: 563
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,171,896
Effective search space: 554306808
Effective search space used: 554306808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)