BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11741
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+ ++GC +G + + + +DN + D S + + H + YK DV
Sbjct: 74 VYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT----PVDVIE 129
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
D A E+ +V+L F L + P++ Q +++++Y+ L PGG ++ +
Sbjct: 130 GDIRD-IAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 178
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
I +IGCG G + ++ K + G D + + I E+ C V +T
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQ---ITGIDLFPDFIEIFNENA--VKANCADRVKGITGS 104
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
N PF E LD LI+ AI + +N+ KYLK GG +
Sbjct: 105 MDNLPFQNEELD---LIWSEGAIYNIGFERGMNEWSKYLKKGGFI 146
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
I +IGCG G + ++ K + G D + + I E+ C V +T
Sbjct: 56 IADIGCGTGGQTLFLADYVKGQ---ITGIDLFPDFIEIFNENA--VKANCADRVKGITGS 110
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
N PF E LD LI+ AI + +N+ KYLK GG +
Sbjct: 111 MDNLPFQNEELD---LIWSEGAIYNIGFERGMNEWSKYLKKGGFI 152
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 81 FKDRHWL-FTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC 139
+ +R L +E E +E L T +LE GCG+G + ++ N + +
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN--NPDAEITSI 67
Query: 140 DFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQ 199
D S ++ +E+ E + F + + ++ PF S D + + FVL+ + +
Sbjct: 68 DISPESLEKARENTEKNGIKNVKF---LQANIFSLPFEDSSFDHIFVCFVLEHL--QSPE 122
Query: 200 HVINQVYKYLKPGGMV 215
+ + K LKPGG +
Sbjct: 123 EALKSLKKVLKPGGTI 138
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVT 168
IL+IGCG G I + V G D + A+ L E P ++ +
Sbjct: 34 ILDIGCGSGK----ISLELASKGYSVTGIDINSEAIR-LAETAARSPGLNQKTGGKAEFK 88
Query: 169 SEDWNP-PFAPESLDI-VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
E+ + F S D V+ F+ +P + +I +V++ LKPG + ++G+
Sbjct: 89 VENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN--W 146
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTR--EEVKTMFESAGFVEKQ---NLIDRRLQVN 280
L+ + R L D + +G+ F R E +T F + F EK+ L D R +++
Sbjct: 147 HLKLYRKRYLHDFPITKEEGS---FLARDPETGETEFIAHHFTEKELVFLLTDCRFEID 202
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 134 VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED--WNPPFAPESLDIVLLIFVLD 191
V Y CD N V ++ E+ + CDVT P P D VL LD
Sbjct: 129 VVTYVCDLEGNRVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPA--DCVLSTLCLD 186
Query: 192 AINPNKMQH--VINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249
A P+ + + + LKPGG ++ D L+ ++Y G+
Sbjct: 187 AACPDLPTYCRALRNLGSLLKPGGFLVIMD---------------ALKSSYYMIGEQKFS 231
Query: 250 YF-FTREEVKTMFESAGFV 267
RE V+ + AG+
Sbjct: 232 SLPLGREAVEAAVKEAGYT 250
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K I +IGCG G + + +H + V G D SE + I +E K + V D
Sbjct: 35 KRIADIGCGTGTATLLLADHYE-----VTGVDLSEEXLEIAQE----KAXETNRHV-DFW 84
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVY----KYLKPGGMVLFRDYGRY 223
+D PE +D + ++ D++N + + + Q + + L GG +LF + Y
Sbjct: 85 VQDXRELELPEPVDAITIL--CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141
>pdb|3HCE|A Chain A, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCE|B Chain B, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 177 APESLDIVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR 234
AP D ++ F LDA++P+ Q ++ + L+PGG +L
Sbjct: 171 APLPADALVSAFCLDAVSPDLASFQRALDHITTLLRPGGHLLLIG--------------- 215
Query: 235 CLQDNFYARGDGTL-VYFFTREEVKTMFESAGF 266
L++++Y G+ L V + EEV+ +G+
Sbjct: 216 ALEESWYLAGEARLTVVPVSEEEVREALVRSGY 248
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 114 IGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN 173
+ CG G + P+ + D YG + S+ LK+ E + R + F +++ D
Sbjct: 28 LDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQ---LKKAENF--SRENNFKLNISKGDIR 81
Query: 174 P-PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
PF ES V + N ++ I+++ + LKPGG+ D R+ K
Sbjct: 82 KLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINFLTTKD---ERYNK 138
Query: 233 GRCLQDNFY---ARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
G + + + RG+ + + + EE F+ + K++ + R +N G +IK
Sbjct: 139 GEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDXKVLFKEDRVVER--INDGLKIK 193
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L+IG G+G I E +G D N VN+ E ++ D+ ++
Sbjct: 59 VLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVS-GNNKIIFEANDILTK 114
Query: 171 DWNPPFAPESLDIVL---LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F + D++ I L N NK+ + YK+LKP G +L DY
Sbjct: 115 E----FPENNFDLIYSRDAILALSLENKNKL---FQKCYKWLKPTGTLLITDY 160
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
I +IGCG G + H V G DF ++I + + V +
Sbjct: 50 IADIGCGTGGQTXVLAGHVTGQ---VTGLDFLSGFIDIFNRNA--RQSGLQNRVTGIVGS 104
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
+ PF E LD LI+ AI + +N+ KYLK GG +
Sbjct: 105 XDDLPFRNEELD---LIWSEGAIYNIGFERGLNEWRKYLKKGGYL 146
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KPDRCH- 161
+L++GCG G V+ + ++ V G D +N + + +++ EY P R +
Sbjct: 86 TVLDLGCGTGRDVY-LASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV 144
Query: 162 ----AFVCDVTSEDWNPPFAPE-SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
F+ ++ + + P P+ S+DIV+ V + ++ NK+ + ++++ L+ GG +
Sbjct: 145 RFLKGFIENLATAE--PEGVPDSSVDIVISNCVCN-LSTNKLA-LFKEIHRVLRDGGELY 200
Query: 217 FRD 219
F D
Sbjct: 201 FSD 203
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 93 EIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152
E I +S K + ++++GCG G I + CK FVY D+ + A+ + K++
Sbjct: 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKRCK----FVYAIDYLDGAIEVTKQN 76
Query: 153 -EEYKPDRCHAF---VCDVTSE-DWNPPFAPESLDIVLLIFVLDAINPNKMQHVI 202
++ C DV + ++N F + +I +I +LD K+ H++
Sbjct: 77 LAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKIIEILD---KKKINHIV 128
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L+IG G+G I E +G D N VN+ E ++ D+ ++
Sbjct: 59 VLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVS-GNNKIIFEANDILTK 114
Query: 171 DWNPPFAPESLDIVLLIFVLDAI------NPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F + D LI+ DAI N NK+ + YK+LKP G +L DY
Sbjct: 115 E----FPENNFD---LIYSRDAILHLSLENKNKL---FQKCYKWLKPTGTLLITDY 160
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L+IG G+G I E +G D N VN+ E ++ D+ ++
Sbjct: 59 VLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVS-GNNKIIFEANDILTK 114
Query: 171 DWNPPFAPESLDIVLLIFVLDAI------NPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F + D LI+ DAI N NK+ + YK+LKP G +L DY
Sbjct: 115 E----FPENNFD---LIYSRDAILHLSLENKNKL---FQKCYKWLKPTGTLLITDY 160
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 18/181 (9%)
Query: 87 LFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAV 146
+F + +I+E + + S N+LE G G GN ++ + VYG + S
Sbjct: 30 VFAHYEDILEDVVNK-----SFGNVLEFGVGTGNLTNKLLLAGRT----VYGIEPSREMR 80
Query: 147 NILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVY 206
I KE P +T D+ P S+D ++ + + ++ I +
Sbjct: 81 MIAKEK---LPKEF-----SITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYS 132
Query: 207 KYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEV-KTMFESAG 265
+ L GG ++F D D Q F+ + ++TR V +T+FE+ G
Sbjct: 133 QLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192
Query: 266 F 266
F
Sbjct: 193 F 193
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L+IG G+G I E +G D N VN E ++ D+ ++
Sbjct: 59 VLDIGSGLGGGCXYINEKY---GAHTHGIDICSNIVNXANERVS-GNNKIIFEANDILTK 114
Query: 171 DWNPPFAPESLDIVLLIFVLDAI------NPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F + D LI+ DAI N NK+ + YK+LKP G +L DY
Sbjct: 115 E----FPENNFD---LIYSRDAILHLSLENKNKL---FQKCYKWLKPTGTLLITDY 160
>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
(hi0319), A Methyltransferase With A Bound
S-adenosylhomocysteine
pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
(hi0319), A Methyltransferase With A Bound
S-adenosylhomocysteine
Length = 244
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVC 165
+ N+ ++GC G + + NV + G D S+ V ++H Y + +C
Sbjct: 58 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPXVERCRQHIAAYHSEIPVEILC 117
Query: 166 -DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
D+ + ++ V+L F L + P ++ ++Y+ L P G+++ + R++
Sbjct: 118 NDIRHVEI------KNASXVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 171
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 26/157 (16%)
Query: 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED 171
+EIG G G P+ G + SE I ++ FV T+E
Sbjct: 52 VEIGVGTGRFAVPLKIKI--------GVEPSERXAEIARKR--------GVFVLKGTAE- 94
Query: 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK 231
N P ES D L + + ++ + + + Y+ LK GG ++ R + ++
Sbjct: 95 -NLPLKDESFDFALXVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 232 KGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
K + + FY FF+ EE+ + AGF E
Sbjct: 152 KNKE-KSVFYKNAR-----FFSTEELXDLXRKAGFEE 182
>pdb|3OFJ|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9
pdb|3OFK|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|B Chain B, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|C Chain C, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|D Chain D, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
Length = 216
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIG 115
N Q+L ++A D + + N F ++RH + LSS + N LEIG
Sbjct: 12 NTYQSLERELAN--DDPWRLDDNPFERERHTQLLRLS-----LSSG-----AVSNGLEIG 59
Query: 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP 175
C G + HCK V D A+ + + A + D
Sbjct: 60 CAAGAFTEKLAPHCKRLTVI----DVMPRAIGRACQRTKRWSHISWA------ATDILQF 109
Query: 176 FAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217
E D++++ VL + + +M+ I+ + K L PGG ++F
Sbjct: 110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K +L++GCG G EH V G D SE + E K VC
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKK---VLGIDLSERMLT------EAKRKTTSPVVCYEQ 96
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
+ P++ ++VL L I + +VY LK G +F
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIF 143
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 25/106 (23%)
Query: 133 NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP------------------ 174
+VF CD A + KE P C V D+ W
Sbjct: 178 SVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGD 236
Query: 175 ----PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
P PE+ D+ +L VL K H++ ++Y KPGG +L
Sbjct: 237 FFKDPL-PEA-DLYILARVLHDWADGKCSHLLERIYHTCKPGGGIL 280
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 175 PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
PF ES D+VLL L+ + ++ V+ + + L+PGG ++
Sbjct: 90 PFPGESFDVVLLFTTLEFV--EDVERVLLEARRVLRPGGALV 129
>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMV 215
+F +NP +++++INQ + YL P G +
Sbjct: 359 MFSFTGLNPKQVEYLINQKHIYLLPSGRI 387
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMV 215
+F +NP +++++INQ + YL P G +
Sbjct: 359 MFSFTGLNPKQVEYLINQKHIYLLPSGRI 387
>pdb|3EQT|A Chain A, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
pdb|3EQT|B Chain B, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
Length = 145
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 201 VINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
VIN+V+K KPGG++ R+ G +Q+ +K
Sbjct: 56 VINKVFKDWKPGGVISCRNCGEVWGLQMIYKS 87
>pdb|2W4R|A Chain A, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|B Chain B, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|C Chain C, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|D Chain D, Crystal Structure Of The Regulatory Domain Of Human Lgp2
Length = 142
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 201 VINQVYKYLKPGGMVLFRDYGRYDLVQLRFK 231
VIN+V+K KPGG++ R+ G +Q+ +K
Sbjct: 60 VINKVFKDWKPGGVISCRNCGEVWGLQMIYK 90
>pdb|2RQA|A Chain A, Solution Structure Of Lgp2 Ctd
Length = 137
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 201 VINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
VIN+V+K KPGG++ R+ G +Q+ +K
Sbjct: 55 VINKVFKDWKPGGVISCRNCGEVWGLQMIYKS 86
>pdb|3QXB|A Chain A, Crystal Structure Of A Putative Xylose Isomerase
(Yp_426450.1) From Rhodospirillum Rubrum Atcc 11170 At
1.90 A Resolution
pdb|3QXB|B Chain B, Crystal Structure Of A Putative Xylose Isomerase
(Yp_426450.1) From Rhodospirillum Rubrum Atcc 11170 At
1.90 A Resolution
pdb|3QXB|C Chain C, Crystal Structure Of A Putative Xylose Isomerase
(Yp_426450.1) From Rhodospirillum Rubrum Atcc 11170 At
1.90 A Resolution
pdb|3QXB|D Chain D, Crystal Structure Of A Putative Xylose Isomerase
(Yp_426450.1) From Rhodospirillum Rubrum Atcc 11170 At
1.90 A Resolution
Length = 316
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTE 90
D+ + W A Y++ Q DRHW FT+
Sbjct: 234 DLCQPWIAAYHIQQTDGQLDRHWSFTQ 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,934,764
Number of Sequences: 62578
Number of extensions: 462919
Number of successful extensions: 1272
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1260
Number of HSP's gapped (non-prelim): 33
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)