Query psy11741
Match_columns 352
No_of_seqs 375 out of 4132
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 17:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361|consensus 100.0 7.7E-44 1.7E-48 292.3 18.0 264 31-351 1-264 (264)
2 COG2226 UbiE Methylase involve 99.9 1.2E-24 2.7E-29 184.5 15.6 195 56-270 12-221 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.9E-25 4.1E-30 191.8 10.8 197 56-271 8-218 (233)
4 PLN02396 hexaprenyldihydroxybe 99.9 7.2E-24 1.6E-28 189.7 16.2 211 50-271 73-287 (322)
5 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.2E-24 2.7E-29 180.9 10.4 205 51-272 10-214 (243)
6 PLN02233 ubiquinone biosynthes 99.9 2.7E-22 5.9E-27 176.2 16.3 198 55-271 33-246 (261)
7 KOG1270|consensus 99.9 2.1E-22 4.6E-27 168.4 10.0 202 49-271 30-247 (282)
8 PRK11036 putative S-adenosyl-L 99.9 2.1E-20 4.5E-25 164.4 16.3 196 59-271 4-205 (255)
9 TIGR02752 MenG_heptapren 2-hep 99.8 3.8E-20 8.2E-25 160.6 15.8 197 57-272 7-217 (231)
10 KOG1540|consensus 99.8 6.2E-20 1.4E-24 152.6 15.5 195 58-270 63-278 (296)
11 PTZ00098 phosphoethanolamine N 99.8 1.3E-19 2.9E-24 159.4 15.8 151 106-272 51-201 (263)
12 PRK14103 trans-aconitate 2-met 99.8 1.4E-19 3.1E-24 159.2 15.4 152 107-273 29-184 (255)
13 PLN02244 tocopherol O-methyltr 99.8 2.7E-19 5.9E-24 163.2 15.8 156 106-272 117-277 (340)
14 PRK15451 tRNA cmo(5)U34 methyl 99.8 3.3E-19 7.1E-24 155.8 14.0 107 108-220 57-165 (247)
15 PF13489 Methyltransf_23: Meth 99.8 1.3E-19 2.7E-24 148.2 8.5 138 108-270 23-160 (161)
16 PF12847 Methyltransf_18: Meth 99.8 8.5E-19 1.8E-23 134.4 11.2 106 107-219 1-111 (112)
17 PRK10258 biotin biosynthesis p 99.8 1.3E-17 2.9E-22 146.4 20.2 140 108-268 43-182 (251)
18 PLN02336 phosphoethanolamine N 99.8 2.3E-18 4.9E-23 165.0 16.6 146 107-271 266-412 (475)
19 PRK05134 bifunctional 3-demeth 99.8 3.6E-18 7.8E-23 148.4 16.3 201 52-271 3-203 (233)
20 PRK15068 tRNA mo(5)U34 methylt 99.8 3.5E-18 7.6E-23 154.2 16.2 151 107-273 122-274 (322)
21 PF08241 Methyltransf_11: Meth 99.8 7.8E-19 1.7E-23 130.2 9.8 95 112-217 1-95 (95)
22 TIGR00740 methyltransferase, p 99.8 1.5E-18 3.2E-23 151.2 12.6 158 108-271 54-225 (239)
23 PRK11207 tellurite resistance 99.8 4.7E-18 1E-22 143.3 14.6 137 108-272 31-169 (197)
24 TIGR03840 TMPT_Se_Te thiopurin 99.8 1.6E-17 3.4E-22 141.0 17.0 170 67-271 1-185 (213)
25 TIGR00477 tehB tellurite resis 99.8 3.4E-18 7.3E-23 143.9 12.7 138 108-272 31-168 (195)
26 COG2230 Cfa Cyclopropane fatty 99.8 4.9E-18 1.1E-22 146.8 12.6 152 104-272 69-222 (283)
27 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.5E-17 3.1E-22 149.6 15.0 143 107-272 113-255 (340)
28 PRK05785 hypothetical protein; 99.8 1.7E-17 3.6E-22 142.7 14.4 182 56-265 10-204 (226)
29 PF13847 Methyltransf_31: Meth 99.8 7.6E-18 1.6E-22 136.4 11.6 109 107-221 3-112 (152)
30 PRK12335 tellurite resistance 99.8 7.2E-18 1.6E-22 150.6 12.5 137 108-271 121-257 (287)
31 PRK11873 arsM arsenite S-adeno 99.8 2.1E-17 4.6E-22 146.8 15.0 154 106-273 76-230 (272)
32 KOG4300|consensus 99.8 1.8E-17 3.9E-22 133.6 12.9 151 108-271 77-230 (252)
33 smart00828 PKS_MT Methyltransf 99.7 2.8E-17 6.1E-22 141.9 14.8 140 110-272 2-143 (224)
34 PF02353 CMAS: Mycolic acid cy 99.7 1.4E-17 3E-22 146.3 13.0 154 104-272 59-216 (273)
35 PF13649 Methyltransf_25: Meth 99.7 2.5E-18 5.4E-23 129.1 7.0 99 111-213 1-101 (101)
36 TIGR02021 BchM-ChlM magnesium 99.7 4.6E-17 9.9E-22 140.0 15.6 149 107-272 55-205 (219)
37 TIGR00452 methyltransferase, p 99.7 1.6E-17 3.5E-22 148.3 12.7 152 107-274 121-274 (314)
38 PRK01683 trans-aconitate 2-met 99.7 6.8E-17 1.5E-21 142.6 15.9 152 107-271 31-185 (258)
39 PF03848 TehB: Tellurite resis 99.7 1.4E-16 3.1E-21 131.1 16.0 138 108-272 31-168 (192)
40 PRK06202 hypothetical protein; 99.7 5.1E-17 1.1E-21 140.9 14.1 157 108-273 61-222 (232)
41 PRK13255 thiopurine S-methyltr 99.7 1.3E-16 2.7E-21 136.0 16.1 172 66-272 3-189 (218)
42 PF08003 Methyltransf_9: Prote 99.7 9.5E-17 2E-21 138.7 15.0 161 107-283 115-277 (315)
43 COG4106 Tam Trans-aconitate me 99.7 5.2E-17 1.1E-21 132.0 12.6 220 107-347 30-255 (257)
44 TIGR02072 BioC biotin biosynth 99.7 1.3E-16 2.9E-21 139.1 16.1 166 108-319 35-200 (240)
45 PLN02585 magnesium protoporphy 99.7 2.1E-16 4.7E-21 141.3 17.3 148 107-272 144-298 (315)
46 PRK00216 ubiE ubiquinone/menaq 99.7 1.9E-16 4.1E-21 138.1 16.1 159 108-273 52-225 (239)
47 TIGR01983 UbiG ubiquinone bios 99.7 1.7E-16 3.8E-21 137.0 15.5 157 107-272 45-202 (224)
48 PRK07580 Mg-protoporphyrin IX 99.7 2.3E-16 4.9E-21 136.9 16.2 195 56-272 12-213 (230)
49 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.9E-16 4.1E-21 136.6 15.5 158 107-272 39-209 (223)
50 TIGR03438 probable methyltrans 99.7 3E-16 6.4E-21 140.9 16.3 154 61-223 23-181 (301)
51 PRK08317 hypothetical protein; 99.7 2.1E-16 4.5E-21 137.8 13.8 158 107-273 19-176 (241)
52 PF08242 Methyltransf_12: Meth 99.7 6.7E-18 1.5E-22 126.4 3.6 98 112-215 1-99 (99)
53 TIGR03587 Pse_Me-ase pseudamin 99.7 3.3E-16 7.1E-21 132.3 12.6 101 108-221 44-144 (204)
54 smart00138 MeTrc Methyltransfe 99.7 3.1E-16 6.7E-21 137.8 12.5 141 74-219 67-242 (264)
55 PRK00107 gidB 16S rRNA methylt 99.7 1.3E-15 2.9E-20 126.3 15.3 122 108-272 46-168 (187)
56 PRK06922 hypothetical protein; 99.7 5.4E-16 1.2E-20 147.6 13.9 111 107-221 418-539 (677)
57 KOG1271|consensus 99.7 6.5E-16 1.4E-20 122.2 11.9 130 109-274 69-206 (227)
58 TIGR02716 C20_methyl_CrtF C-20 99.7 9.3E-16 2E-20 138.5 14.0 152 107-271 149-304 (306)
59 PLN02336 phosphoethanolamine N 99.7 1.9E-15 4.2E-20 144.8 16.7 145 108-273 38-182 (475)
60 TIGR02081 metW methionine bios 99.6 4.1E-15 8.8E-20 125.3 14.9 153 108-276 14-170 (194)
61 PRK11705 cyclopropane fatty ac 99.6 4E-15 8.6E-20 137.4 15.8 145 106-271 166-310 (383)
62 TIGR00537 hemK_rel_arch HemK-r 99.6 5E-15 1.1E-19 123.2 14.9 126 108-272 20-164 (179)
63 PF05401 NodS: Nodulation prot 99.6 2.1E-15 4.5E-20 122.6 12.1 103 108-220 44-147 (201)
64 TIGR00138 gidB 16S rRNA methyl 99.6 3.9E-15 8.4E-20 123.4 13.7 98 108-218 43-141 (181)
65 PRK13256 thiopurine S-methyltr 99.6 1E-14 2.2E-19 123.6 15.2 142 65-220 8-164 (226)
66 PF07021 MetW: Methionine bios 99.6 1.1E-14 2.3E-19 118.3 14.5 147 108-273 14-167 (193)
67 PRK00121 trmB tRNA (guanine-N( 99.6 1.4E-15 3E-20 128.7 9.3 109 108-220 41-157 (202)
68 PRK08287 cobalt-precorrin-6Y C 99.6 1.3E-14 2.9E-19 121.5 14.2 123 107-271 31-154 (187)
69 PRK04266 fibrillarin; Provisio 99.6 2.2E-14 4.7E-19 122.8 15.3 139 106-272 71-209 (226)
70 PF05724 TPMT: Thiopurine S-me 99.6 1.3E-14 2.9E-19 123.2 13.6 174 65-273 2-190 (218)
71 PRK14966 unknown domain/N5-glu 99.6 2.8E-14 6E-19 130.4 16.4 131 108-273 252-405 (423)
72 PF05891 Methyltransf_PK: AdoM 99.6 1.6E-14 3.4E-19 119.6 12.3 151 107-278 55-206 (218)
73 TIGR02469 CbiT precorrin-6Y C5 99.6 2.7E-14 6E-19 111.2 11.3 103 108-220 20-123 (124)
74 PLN02232 ubiquinone biosynthes 99.6 1.3E-14 2.8E-19 118.1 9.1 129 137-271 1-145 (160)
75 TIGR00536 hemK_fam HemK family 99.6 1.3E-13 2.9E-18 122.9 16.0 104 109-219 116-244 (284)
76 PRK00377 cbiT cobalt-precorrin 99.6 7.7E-14 1.7E-18 117.9 13.5 124 107-268 40-165 (198)
77 PLN03075 nicotianamine synthas 99.5 4E-14 8.7E-19 124.1 11.5 107 107-219 123-233 (296)
78 PF05175 MTS: Methyltransferas 99.5 1.1E-13 2.3E-18 114.0 12.6 105 108-219 32-140 (170)
79 TIGR03533 L3_gln_methyl protei 99.5 2.6E-13 5.6E-18 120.7 16.0 125 108-270 122-271 (284)
80 PRK11088 rrmA 23S rRNA methylt 99.5 5.8E-14 1.3E-18 124.6 11.7 101 108-225 86-187 (272)
81 COG4976 Predicted methyltransf 99.5 2.2E-14 4.7E-19 117.8 8.1 139 108-272 126-264 (287)
82 PRK09328 N5-glutamine S-adenos 99.5 3.8E-13 8.2E-18 119.9 16.5 128 107-271 108-260 (275)
83 TIGR00091 tRNA (guanine-N(7)-) 99.5 3.6E-14 7.9E-19 119.4 9.0 111 108-221 17-134 (194)
84 TIGR03534 RF_mod_PrmC protein- 99.5 2.2E-13 4.8E-18 119.7 14.2 129 108-273 88-241 (251)
85 COG2242 CobL Precorrin-6B meth 99.5 5.6E-13 1.2E-17 107.6 14.9 127 106-273 33-161 (187)
86 PRK01544 bifunctional N5-gluta 99.5 2.4E-13 5.3E-18 129.9 15.2 129 108-273 139-293 (506)
87 PRK14968 putative methyltransf 99.5 3.8E-13 8.3E-18 112.8 14.6 126 108-271 24-171 (188)
88 PTZ00146 fibrillarin; Provisio 99.5 3.8E-13 8.3E-18 117.5 14.2 106 106-218 131-236 (293)
89 PRK13944 protein-L-isoaspartat 99.5 1.7E-13 3.7E-18 116.2 10.9 100 107-219 72-173 (205)
90 KOG1541|consensus 99.5 2.8E-13 6.1E-18 110.7 11.1 104 107-221 50-162 (270)
91 PF03291 Pox_MCEL: mRNA cappin 99.5 2.5E-13 5.5E-18 122.3 11.6 113 107-222 62-189 (331)
92 PRK00517 prmA ribosomal protei 99.5 4.4E-13 9.5E-18 117.4 12.4 119 107-272 119-237 (250)
93 PRK09489 rsmC 16S ribosomal RN 99.5 3.1E-13 6.7E-18 122.8 11.7 104 108-219 197-303 (342)
94 PRK15001 SAM-dependent 23S rib 99.5 3.4E-13 7.4E-18 123.2 12.0 105 108-219 229-340 (378)
95 PRK14967 putative methyltransf 99.5 1.2E-12 2.6E-17 112.7 14.5 127 108-271 37-182 (223)
96 TIGR00406 prmA ribosomal prote 99.5 5.8E-13 1.3E-17 118.9 12.6 101 107-221 159-261 (288)
97 PRK13942 protein-L-isoaspartat 99.5 4E-13 8.7E-18 114.5 11.0 100 106-218 75-175 (212)
98 TIGR01177 conserved hypothetic 99.5 5.5E-13 1.2E-17 121.5 11.4 107 106-220 181-295 (329)
99 TIGR00080 pimt protein-L-isoas 99.4 6.8E-13 1.5E-17 113.6 10.6 101 106-219 76-177 (215)
100 COG2264 PrmA Ribosomal protein 99.4 1E-12 2.2E-17 114.8 11.7 125 107-273 162-288 (300)
101 PHA03411 putative methyltransf 99.4 1.6E-12 3.5E-17 112.3 12.6 129 108-270 65-211 (279)
102 KOG1975|consensus 99.4 5.7E-12 1.2E-16 108.8 15.0 157 52-221 71-239 (389)
103 PRK11805 N5-glutamine S-adenos 99.4 2.9E-12 6.2E-17 115.0 13.9 103 109-218 135-262 (307)
104 PRK14121 tRNA (guanine-N(7)-)- 99.4 9.4E-13 2E-17 119.7 10.6 110 108-221 123-237 (390)
105 PRK11188 rrmJ 23S rRNA methylt 99.4 1.6E-12 3.5E-17 110.4 11.2 104 107-221 51-167 (209)
106 KOG3010|consensus 99.4 9.8E-13 2.1E-17 109.3 9.2 101 110-221 36-139 (261)
107 COG4123 Predicted O-methyltran 99.4 2.4E-12 5.2E-17 109.6 11.8 132 108-273 45-194 (248)
108 PF06325 PrmA: Ribosomal prote 99.4 2E-12 4.3E-17 114.3 11.4 122 107-272 161-282 (295)
109 TIGR03704 PrmC_rel_meth putati 99.4 6.2E-12 1.3E-16 109.8 13.6 127 108-271 87-238 (251)
110 PF06080 DUF938: Protein of un 99.4 3.5E-12 7.5E-17 105.3 11.0 157 110-271 28-190 (204)
111 PRK07402 precorrin-6B methylas 99.4 2.9E-12 6.3E-17 108.1 10.7 104 107-221 40-144 (196)
112 COG2890 HemK Methylase of poly 99.4 7.7E-12 1.7E-16 110.6 13.7 124 110-271 113-261 (280)
113 PF13659 Methyltransf_26: Meth 99.4 1.1E-12 2.4E-17 101.1 7.0 107 108-219 1-115 (117)
114 PF01739 CheR: CheR methyltran 99.3 3.6E-12 7.8E-17 106.3 8.8 108 107-218 31-174 (196)
115 PF00891 Methyltransf_2: O-met 99.3 9.2E-12 2E-16 108.7 10.6 99 108-221 101-201 (241)
116 PRK00312 pcm protein-L-isoaspa 99.3 1.1E-11 2.4E-16 105.9 10.8 99 106-220 77-176 (212)
117 TIGR00438 rrmJ cell division p 99.3 1.3E-11 2.7E-16 103.5 10.5 103 107-220 32-147 (188)
118 PRK04457 spermidine synthase; 99.3 6.8E-12 1.5E-16 110.2 9.0 108 108-220 67-178 (262)
119 cd02440 AdoMet_MTases S-adenos 99.3 2E-11 4.4E-16 91.2 10.4 102 110-218 1-103 (107)
120 PF12147 Methyltransf_20: Puta 99.3 7.3E-11 1.6E-15 101.4 14.4 161 107-273 135-298 (311)
121 PRK10901 16S rRNA methyltransf 99.3 2.3E-11 5E-16 114.6 12.5 115 104-222 241-375 (427)
122 KOG2899|consensus 99.3 2.9E-11 6.4E-16 100.4 11.4 149 106-264 57-246 (288)
123 PRK00811 spermidine synthase; 99.3 1.6E-11 3.5E-16 109.1 9.9 107 108-219 77-191 (283)
124 PRK14904 16S rRNA methyltransf 99.3 3.1E-11 6.8E-16 114.3 12.1 112 105-222 248-380 (445)
125 PRK14901 16S rRNA methyltransf 99.3 3.3E-11 7.2E-16 113.8 11.7 118 104-222 249-387 (434)
126 PRK15128 23S rRNA m(5)C1962 me 99.3 3.3E-11 7.2E-16 111.5 11.2 111 108-221 221-341 (396)
127 PRK10611 chemotaxis methyltran 99.3 1.1E-10 2.4E-15 102.8 14.0 135 73-218 89-261 (287)
128 COG2519 GCD14 tRNA(1-methylade 99.3 5.9E-11 1.3E-15 100.3 11.3 127 104-272 91-219 (256)
129 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.9E-11 6.3E-16 120.4 11.1 104 108-219 539-656 (702)
130 PRK14903 16S rRNA methyltransf 99.3 4E-11 8.6E-16 112.7 11.3 114 105-222 235-369 (431)
131 PLN02672 methionine S-methyltr 99.3 7.2E-11 1.6E-15 119.9 13.8 131 108-273 119-303 (1082)
132 TIGR00446 nop2p NOL1/NOP2/sun 99.2 4.4E-11 9.6E-16 105.5 10.6 112 106-222 70-202 (264)
133 PF05219 DREV: DREV methyltran 99.2 1.2E-10 2.6E-15 99.0 12.5 146 107-273 94-240 (265)
134 PRK13943 protein-L-isoaspartat 99.2 4.6E-11 1E-15 107.3 10.4 100 107-219 80-180 (322)
135 KOG2940|consensus 99.2 5.6E-11 1.2E-15 97.8 9.8 155 108-275 73-229 (325)
136 PRK01581 speE spermidine synth 99.2 1.4E-10 3E-15 104.2 13.0 107 108-219 151-268 (374)
137 PLN02781 Probable caffeoyl-CoA 99.2 3.3E-11 7.2E-16 104.1 8.8 106 108-219 69-178 (234)
138 TIGR00563 rsmB ribosomal RNA s 99.2 6.4E-11 1.4E-15 111.7 11.4 115 104-222 235-371 (426)
139 COG2813 RsmC 16S RNA G1207 met 99.2 1E-10 2.2E-15 101.9 10.9 105 108-220 159-267 (300)
140 COG1352 CheR Methylase of chem 99.2 1.8E-10 3.8E-15 100.2 12.0 140 73-218 64-240 (268)
141 PRK14902 16S rRNA methyltransf 99.2 1.2E-10 2.6E-15 110.4 11.9 113 105-221 248-381 (444)
142 PF05148 Methyltransf_8: Hypot 99.2 9.6E-11 2.1E-15 96.2 9.6 167 45-272 18-184 (219)
143 PF08704 GCD14: tRNA methyltra 99.2 1.3E-10 2.8E-15 100.1 10.0 130 105-272 38-170 (247)
144 smart00650 rADc Ribosomal RNA 99.2 1.5E-10 3.3E-15 95.2 10.0 100 107-218 13-112 (169)
145 COG2518 Pcm Protein-L-isoaspar 99.2 1.6E-10 3.4E-15 95.7 10.0 100 105-220 70-170 (209)
146 PF01135 PCMT: Protein-L-isoas 99.2 9.2E-11 2E-15 99.0 7.7 102 105-219 70-172 (209)
147 KOG2904|consensus 99.2 2.6E-10 5.6E-15 96.6 10.2 111 108-220 149-286 (328)
148 TIGR03439 methyl_EasF probable 99.2 3E-09 6.4E-14 95.3 17.4 112 108-219 77-197 (319)
149 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.1 1.2E-09 2.5E-14 94.4 13.9 147 107-272 56-238 (256)
150 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.5E-10 7.6E-15 107.2 11.7 103 107-219 297-400 (443)
151 PRK03612 spermidine synthase; 99.1 6.8E-10 1.5E-14 107.0 12.6 106 108-219 298-415 (521)
152 TIGR00417 speE spermidine synt 99.1 2.8E-10 6.1E-15 100.7 8.8 106 108-218 73-185 (270)
153 PLN02366 spermidine synthase 99.1 4.4E-10 9.5E-15 100.5 9.9 108 108-219 92-206 (308)
154 PHA03412 putative methyltransf 99.1 7.3E-10 1.6E-14 93.8 10.1 98 108-214 50-158 (241)
155 PF02390 Methyltransf_4: Putat 99.1 3.1E-10 6.8E-15 95.0 7.6 108 109-219 19-133 (195)
156 COG1092 Predicted SAM-dependen 99.1 4.3E-10 9.4E-15 102.7 9.0 108 108-221 218-338 (393)
157 PLN02476 O-methyltransferase 99.1 5E-10 1.1E-14 97.9 8.7 106 108-219 119-228 (278)
158 PF01596 Methyltransf_3: O-met 99.1 2.2E-10 4.8E-15 96.4 5.5 107 108-220 46-156 (205)
159 COG4122 Predicted O-methyltran 99.0 7.9E-10 1.7E-14 92.9 8.4 106 107-220 59-167 (219)
160 COG2263 Predicted RNA methylas 99.0 7.8E-10 1.7E-14 89.2 7.8 73 106-188 44-116 (198)
161 KOG3045|consensus 99.0 5.6E-09 1.2E-13 87.8 12.5 110 108-272 181-290 (325)
162 COG0220 Predicted S-adenosylme 99.0 9.6E-10 2.1E-14 93.6 8.1 109 109-220 50-165 (227)
163 COG1041 Predicted DNA modifica 99.0 3.9E-09 8.4E-14 93.7 10.8 107 105-219 195-310 (347)
164 PRK03522 rumB 23S rRNA methylu 99.0 2E-09 4.4E-14 97.5 8.6 100 108-219 174-274 (315)
165 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.9E-09 8.4E-14 88.5 9.4 105 108-221 54-161 (199)
166 TIGR00479 rumA 23S rRNA (uraci 99.0 2.8E-09 6.1E-14 100.9 9.7 103 107-218 292-395 (431)
167 PF10294 Methyltransf_16: Puta 99.0 1.3E-09 2.9E-14 89.7 6.3 109 107-220 45-157 (173)
168 KOG3191|consensus 98.9 3.3E-08 7.2E-13 78.9 13.7 129 108-271 44-191 (209)
169 PRK11727 23S rRNA mA1618 methy 98.9 2.8E-08 6.2E-13 89.0 13.9 154 107-271 114-290 (321)
170 PLN02589 caffeoyl-CoA O-methyl 98.9 4.1E-09 8.9E-14 91.1 8.2 106 108-219 80-190 (247)
171 PF10672 Methyltrans_SAM: S-ad 98.9 4.4E-09 9.6E-14 92.5 7.5 109 108-221 124-240 (286)
172 KOG3178|consensus 98.9 9E-09 1.9E-13 91.1 9.2 150 108-273 178-330 (342)
173 KOG1331|consensus 98.9 4.7E-09 1E-13 90.0 7.0 99 108-221 46-145 (293)
174 COG3963 Phospholipid N-methylt 98.9 1.7E-08 3.8E-13 79.4 9.5 113 106-223 47-160 (194)
175 COG2521 Predicted archaeal met 98.9 9E-09 1.9E-13 85.4 8.2 139 103-271 130-275 (287)
176 PF11968 DUF3321: Putative met 98.9 4.8E-08 1E-12 81.0 12.3 123 108-273 52-181 (219)
177 KOG1499|consensus 98.9 6.5E-09 1.4E-13 91.8 7.6 104 107-218 60-166 (346)
178 TIGR02085 meth_trns_rumB 23S r 98.8 1.4E-08 3.1E-13 94.0 9.4 100 108-219 234-334 (374)
179 PRK14896 ksgA 16S ribosomal RN 98.8 2E-08 4.3E-13 88.3 9.3 92 79-190 10-101 (258)
180 PF07942 N2227: N2227-like pro 98.8 1.5E-07 3.2E-12 81.9 14.1 145 107-273 56-242 (270)
181 PLN02823 spermine synthase 98.8 2.6E-08 5.7E-13 90.1 9.3 105 108-218 104-219 (336)
182 PRK00274 ksgA 16S ribosomal RN 98.8 2.1E-08 4.6E-13 88.8 8.1 72 107-188 42-113 (272)
183 TIGR00095 RNA methyltransferas 98.7 3.6E-08 7.8E-13 82.3 8.0 107 108-220 50-160 (189)
184 PTZ00338 dimethyladenosine tra 98.7 3.3E-08 7.3E-13 88.0 7.9 91 79-188 17-109 (294)
185 TIGR00478 tly hemolysin TlyA f 98.7 8.6E-08 1.9E-12 81.9 10.1 139 107-272 75-216 (228)
186 PF09243 Rsm22: Mitochondrial 98.7 2.5E-07 5.5E-12 81.9 13.2 135 107-273 33-168 (274)
187 TIGR00755 ksgA dimethyladenosi 98.7 1.3E-07 2.7E-12 83.1 11.2 77 79-169 10-86 (253)
188 PRK04148 hypothetical protein; 98.7 1.5E-07 3.3E-12 72.7 10.2 93 108-220 17-110 (134)
189 PRK11933 yebU rRNA (cytosine-C 98.7 2.1E-07 4.6E-12 87.9 13.0 115 105-223 111-246 (470)
190 PF05185 PRMT5: PRMT5 arginine 98.7 8.8E-08 1.9E-12 90.1 8.8 105 108-217 187-295 (448)
191 PF01170 UPF0020: Putative RNA 98.7 8.1E-08 1.8E-12 79.5 7.6 106 107-218 28-150 (179)
192 KOG1500|consensus 98.7 1.8E-07 3.8E-12 81.7 9.8 104 105-217 175-280 (517)
193 PF02527 GidB: rRNA small subu 98.7 2.2E-07 4.7E-12 76.8 9.9 96 110-218 51-147 (184)
194 KOG3420|consensus 98.6 4E-08 8.7E-13 75.3 4.5 77 107-190 48-124 (185)
195 PF03141 Methyltransf_29: Puta 98.6 4E-08 8.7E-13 90.9 5.0 100 109-221 119-221 (506)
196 KOG1661|consensus 98.6 1.9E-07 4.1E-12 76.5 7.5 100 107-218 82-192 (237)
197 COG0421 SpeE Spermidine syntha 98.6 2.8E-07 6.1E-12 81.1 9.0 105 108-218 77-189 (282)
198 PRK05031 tRNA (uracil-5-)-meth 98.6 9.4E-08 2E-12 88.1 5.9 97 109-219 208-320 (362)
199 PRK01544 bifunctional N5-gluta 98.5 1.7E-07 3.7E-12 90.1 7.4 109 107-219 347-462 (506)
200 COG0144 Sun tRNA and rRNA cyto 98.5 1.1E-06 2.5E-11 80.6 12.3 119 103-222 152-291 (355)
201 KOG1663|consensus 98.5 3.8E-07 8.2E-12 76.0 8.2 106 108-219 74-183 (237)
202 PRK04338 N(2),N(2)-dimethylgua 98.5 2.4E-07 5.2E-12 85.6 7.8 99 108-218 58-157 (382)
203 TIGR02143 trmA_only tRNA (urac 98.5 2.4E-07 5.1E-12 85.1 6.9 57 109-169 199-256 (353)
204 KOG3987|consensus 98.5 2.9E-08 6.3E-13 80.8 0.5 94 108-219 113-207 (288)
205 COG4627 Uncharacterized protei 98.5 2.2E-07 4.8E-12 72.1 5.2 139 173-345 40-181 (185)
206 COG0357 GidB Predicted S-adeno 98.5 3E-06 6.6E-11 71.2 11.8 97 108-217 68-166 (215)
207 PRK00050 16S rRNA m(4)C1402 me 98.5 3.4E-07 7.3E-12 81.1 6.4 81 107-189 19-99 (296)
208 PF02475 Met_10: Met-10+ like- 98.4 5.5E-07 1.2E-11 75.3 7.2 97 107-216 101-199 (200)
209 PF01728 FtsJ: FtsJ-like methy 98.4 2.4E-07 5.2E-12 77.1 4.3 103 108-221 24-141 (181)
210 PF03602 Cons_hypoth95: Conser 98.4 1.9E-07 4.1E-12 77.4 3.5 108 108-221 43-155 (183)
211 PF01564 Spermine_synth: Sperm 98.4 5.9E-07 1.3E-11 78.2 6.7 107 108-219 77-191 (246)
212 COG0500 SmtA SAM-dependent met 98.4 4.3E-06 9.4E-11 67.8 11.5 106 111-223 52-159 (257)
213 KOG1269|consensus 98.4 4.6E-07 1E-11 82.5 5.8 108 105-221 108-217 (364)
214 PF01269 Fibrillarin: Fibrilla 98.4 4.1E-06 8.9E-11 69.9 10.5 104 105-219 71-178 (229)
215 PF09445 Methyltransf_15: RNA 98.4 7.2E-07 1.6E-11 71.7 5.7 95 110-209 2-112 (163)
216 PRK00536 speE spermidine synth 98.4 3.5E-06 7.5E-11 73.4 10.0 94 108-219 73-171 (262)
217 COG0030 KsgA Dimethyladenosine 98.3 3.6E-06 7.8E-11 72.7 8.9 91 79-187 11-102 (259)
218 KOG2352|consensus 98.3 4.7E-06 1E-10 77.1 10.0 105 109-220 50-162 (482)
219 COG3897 Predicted methyltransf 98.3 3.4E-06 7.4E-11 68.5 7.9 106 107-224 79-184 (218)
220 KOG2915|consensus 98.2 1.6E-05 3.5E-10 67.9 11.4 132 104-273 102-235 (314)
221 PF04672 Methyltransf_19: S-ad 98.2 2E-06 4.3E-11 74.3 5.9 172 82-270 51-233 (267)
222 COG0293 FtsJ 23S rRNA methylas 98.2 6.2E-06 1.3E-10 68.5 8.5 104 107-221 45-161 (205)
223 PF04816 DUF633: Family of unk 98.2 2.3E-05 5E-10 66.0 11.9 121 111-273 1-124 (205)
224 KOG1709|consensus 98.2 9.9E-06 2.1E-10 66.7 8.7 105 107-218 101-205 (271)
225 COG2265 TrmA SAM-dependent met 98.2 9.6E-06 2.1E-10 76.0 9.8 102 107-219 293-396 (432)
226 COG4076 Predicted RNA methylas 98.2 5.4E-06 1.2E-10 66.7 6.9 101 108-218 33-134 (252)
227 COG0742 N6-adenine-specific me 98.2 1.1E-05 2.3E-10 66.0 8.4 107 107-220 43-155 (187)
228 KOG0820|consensus 98.1 8.5E-06 1.8E-10 69.6 7.6 72 105-186 56-129 (315)
229 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.8E-05 3.9E-10 71.8 10.3 127 83-220 30-184 (311)
230 COG2520 Predicted methyltransf 98.1 3.3E-05 7.2E-10 69.5 11.7 129 107-271 188-318 (341)
231 TIGR00308 TRM1 tRNA(guanine-26 98.1 6.5E-06 1.4E-10 75.8 6.8 101 108-218 45-146 (374)
232 PRK11783 rlmL 23S rRNA m(2)G24 98.1 2.2E-05 4.8E-10 78.7 10.9 113 107-221 190-349 (702)
233 PF05958 tRNA_U5-meth_tr: tRNA 98.0 1.2E-05 2.6E-10 74.0 7.3 57 109-169 198-255 (352)
234 TIGR02987 met_A_Alw26 type II 98.0 2.6E-05 5.5E-10 75.9 9.6 80 108-187 32-119 (524)
235 COG4798 Predicted methyltransf 97.9 0.00011 2.4E-09 59.7 10.0 143 105-271 46-203 (238)
236 PF13578 Methyltransf_24: Meth 97.9 2.3E-06 4.9E-11 64.5 0.3 101 112-219 1-105 (106)
237 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 1.4E-05 3.1E-10 71.0 5.5 114 105-221 83-221 (283)
238 PF08123 DOT1: Histone methyla 97.9 6.3E-05 1.4E-09 63.4 8.8 105 107-217 42-156 (205)
239 COG4301 Uncharacterized conser 97.9 0.00025 5.4E-09 59.9 11.7 111 108-219 79-193 (321)
240 PF03059 NAS: Nicotianamine sy 97.9 5.5E-05 1.2E-09 66.2 8.0 106 108-219 121-230 (276)
241 KOG2187|consensus 97.9 8.3E-05 1.8E-09 69.3 9.4 59 107-169 383-442 (534)
242 KOG3201|consensus 97.9 1.9E-05 4.2E-10 62.0 4.3 130 108-271 30-164 (201)
243 KOG2730|consensus 97.9 7.5E-06 1.6E-10 67.7 2.1 101 108-214 95-197 (263)
244 KOG2798|consensus 97.8 0.00026 5.7E-09 61.8 11.5 146 107-272 150-336 (369)
245 COG0116 Predicted N6-adenine-s 97.8 0.00011 2.3E-09 66.8 9.4 112 104-219 188-344 (381)
246 PRK11760 putative 23S rRNA C24 97.8 0.00011 2.3E-09 65.9 8.9 87 106-212 210-296 (357)
247 PF13679 Methyltransf_32: Meth 97.8 5.7E-05 1.2E-09 60.0 6.5 83 107-194 25-113 (141)
248 PF00398 RrnaAD: Ribosomal RNA 97.8 0.00018 3.8E-09 63.5 9.9 77 79-169 11-87 (262)
249 KOG4589|consensus 97.8 0.00014 2.9E-09 58.8 7.9 105 107-222 69-187 (232)
250 KOG3115|consensus 97.8 9.4E-05 2E-09 60.5 7.1 109 108-219 61-183 (249)
251 COG1889 NOP1 Fibrillarin-like 97.8 0.00027 5.8E-09 57.9 9.7 106 105-218 74-179 (231)
252 COG4262 Predicted spermidine s 97.7 0.00027 5.8E-09 63.1 10.1 105 108-221 290-409 (508)
253 COG1189 Predicted rRNA methyla 97.7 0.00039 8.4E-09 58.8 10.0 144 107-273 79-224 (245)
254 PLN02668 indole-3-acetate carb 97.7 0.00043 9.4E-09 63.6 11.2 112 108-223 64-241 (386)
255 TIGR01444 fkbM_fam methyltrans 97.7 9.5E-05 2.1E-09 58.8 6.0 58 110-169 1-59 (143)
256 KOG1122|consensus 97.7 0.00039 8.5E-09 63.2 10.2 116 104-222 238-374 (460)
257 COG5459 Predicted rRNA methyla 97.6 0.00016 3.5E-09 64.0 6.6 115 106-223 112-229 (484)
258 PF07091 FmrO: Ribosomal RNA m 97.6 0.00041 8.8E-09 59.4 8.6 79 108-193 106-184 (251)
259 COG0275 Predicted S-adenosylme 97.6 0.00051 1.1E-08 60.1 9.3 81 105-186 21-102 (314)
260 PF03492 Methyltransf_7: SAM d 97.6 0.0004 8.7E-09 63.3 9.0 113 108-224 17-188 (334)
261 TIGR00027 mthyl_TIGR00027 meth 97.6 0.0007 1.5E-08 59.5 10.1 156 108-271 82-248 (260)
262 TIGR00006 S-adenosyl-methyltra 97.5 0.00018 3.8E-09 64.1 5.2 81 107-189 20-101 (305)
263 COG2384 Predicted SAM-dependen 97.5 0.0049 1.1E-07 51.6 13.2 124 108-272 17-142 (226)
264 PF05971 Methyltransf_10: Prot 97.4 0.00098 2.1E-08 59.1 8.9 83 108-192 103-189 (299)
265 PF01861 DUF43: Protein of unk 97.2 0.025 5.4E-07 48.3 14.9 136 107-276 44-181 (243)
266 KOG1596|consensus 97.2 0.0019 4.1E-08 54.5 8.0 104 105-219 154-261 (317)
267 PRK10742 putative methyltransf 97.2 0.0015 3.3E-08 56.1 7.5 70 110-186 91-170 (250)
268 PF04989 CmcI: Cephalosporin h 97.1 0.00091 2E-08 55.8 5.2 110 108-220 33-148 (206)
269 PF03141 Methyltransf_29: Puta 97.0 0.0011 2.3E-08 62.1 5.0 99 108-219 366-467 (506)
270 COG0286 HsdM Type I restrictio 96.8 0.039 8.4E-07 53.2 14.4 152 58-219 147-326 (489)
271 PF06962 rRNA_methylase: Putat 96.7 0.0074 1.6E-07 47.2 7.3 84 135-222 1-95 (140)
272 PF06859 Bin3: Bicoid-interact 96.7 0.0011 2.4E-08 49.0 2.5 39 180-218 1-43 (110)
273 KOG2793|consensus 96.6 0.015 3.3E-07 50.1 9.0 107 108-220 87-200 (248)
274 KOG2198|consensus 96.6 0.026 5.6E-07 51.0 10.4 121 103-223 151-300 (375)
275 PF11312 DUF3115: Protein of u 96.5 0.0098 2.1E-07 52.7 7.0 114 107-220 86-243 (315)
276 COG1565 Uncharacterized conser 96.5 0.049 1.1E-06 49.3 11.5 47 108-154 78-130 (370)
277 COG3315 O-Methyltransferase in 96.3 0.054 1.2E-06 48.5 11.2 159 108-271 93-262 (297)
278 PF01795 Methyltransf_5: MraW 96.3 0.014 3E-07 52.1 7.0 78 107-186 20-99 (310)
279 PRK01747 mnmC bifunctional tRN 96.1 0.025 5.4E-07 56.9 8.9 108 108-218 58-205 (662)
280 KOG2920|consensus 96.1 0.0032 6.9E-08 54.8 2.1 105 107-218 116-233 (282)
281 COG1064 AdhP Zn-dependent alco 96.0 0.032 6.9E-07 50.5 7.8 97 105-221 164-261 (339)
282 KOG2361|consensus 95.9 0.011 2.3E-07 50.2 4.4 46 252-297 216-261 (264)
283 KOG2539|consensus 95.9 0.012 2.6E-07 54.6 4.9 117 105-221 198-317 (491)
284 PF11599 AviRa: RRNA methyltra 95.8 0.011 2.4E-07 49.2 3.8 47 107-153 51-97 (246)
285 PF02254 TrkA_N: TrkA-N domain 95.7 0.034 7.3E-07 42.2 6.1 93 116-219 4-96 (116)
286 PHA01634 hypothetical protein 95.6 0.052 1.1E-06 41.3 6.3 45 108-155 29-73 (156)
287 PF04445 SAM_MT: Putative SAM- 95.5 0.021 4.6E-07 48.8 4.6 76 109-191 77-162 (234)
288 cd00315 Cyt_C5_DNA_methylase C 95.5 0.32 6.9E-06 43.2 12.3 68 110-188 2-70 (275)
289 KOG1099|consensus 95.4 0.015 3.3E-07 48.8 3.3 104 108-221 42-165 (294)
290 KOG1562|consensus 95.4 0.044 9.6E-07 48.0 6.3 109 107-219 121-236 (337)
291 COG3510 CmcI Cephalosporin hyd 95.4 0.036 7.9E-07 45.3 5.2 111 108-224 70-185 (237)
292 PF10354 DUF2431: Domain of un 95.2 0.25 5.4E-06 40.2 9.8 131 114-272 3-151 (166)
293 KOG4058|consensus 95.2 0.15 3.3E-06 39.9 7.9 102 105-220 70-173 (199)
294 PF05711 TylF: Macrocin-O-meth 95.1 0.17 3.8E-06 43.9 9.1 108 108-222 75-215 (248)
295 PF07757 AdoMet_MTase: Predict 95.1 0.014 3E-07 43.1 1.9 32 108-143 59-90 (112)
296 PRK11524 putative methyltransf 95.1 0.034 7.4E-07 49.7 4.8 46 105-154 206-251 (284)
297 PF01555 N6_N4_Mtase: DNA meth 95.0 0.04 8.6E-07 47.2 4.9 41 107-151 191-231 (231)
298 PF02005 TRM: N2,N2-dimethylgu 94.9 0.047 1E-06 50.6 5.3 102 108-219 50-154 (377)
299 PF02636 Methyltransf_28: Puta 94.9 0.084 1.8E-06 46.3 6.6 78 108-194 19-109 (252)
300 KOG0822|consensus 94.5 0.11 2.3E-06 49.2 6.6 109 108-221 368-480 (649)
301 KOG2671|consensus 94.5 0.063 1.4E-06 48.0 4.8 108 106-220 207-355 (421)
302 COG1867 TRM1 N2,N2-dimethylgua 94.5 0.1 2.2E-06 47.3 6.2 101 108-219 53-154 (380)
303 PRK13699 putative methylase; P 94.3 0.072 1.6E-06 45.9 4.8 47 105-155 161-207 (227)
304 KOG1501|consensus 94.3 0.071 1.5E-06 49.2 4.9 99 108-213 67-169 (636)
305 PF03269 DUF268: Caenorhabditi 94.2 0.026 5.7E-07 44.8 1.7 102 108-221 2-113 (177)
306 COG3129 Predicted SAM-dependen 94.1 0.1 2.3E-06 44.0 5.0 84 107-192 78-165 (292)
307 PRK09424 pntA NAD(P) transhydr 93.9 0.46 1E-05 45.9 9.7 105 105-220 162-286 (509)
308 cd08283 FDH_like_1 Glutathione 93.9 0.15 3.2E-06 47.8 6.3 107 107-219 184-306 (386)
309 KOG1253|consensus 93.5 0.036 7.7E-07 51.9 1.5 107 106-219 108-216 (525)
310 PRK13699 putative methylase; P 93.5 0.24 5.1E-06 42.6 6.4 21 198-218 51-71 (227)
311 PF00145 DNA_methylase: C-5 cy 93.3 0.47 1E-05 43.1 8.7 129 110-273 2-142 (335)
312 KOG2352|consensus 92.8 0.099 2.1E-06 49.1 3.3 114 108-223 296-420 (482)
313 KOG0024|consensus 92.8 0.2 4.4E-06 44.6 5.0 106 104-223 166-277 (354)
314 PF11899 DUF3419: Protein of u 92.5 0.27 5.9E-06 45.6 5.8 63 158-222 275-337 (380)
315 PF04072 LCM: Leucine carboxyl 92.5 0.14 3.1E-06 42.4 3.6 94 109-205 80-182 (183)
316 COG1063 Tdh Threonine dehydrog 92.5 0.5 1.1E-05 43.6 7.5 101 108-221 169-271 (350)
317 KOG1098|consensus 92.1 0.1 2.2E-06 50.2 2.5 102 108-220 45-159 (780)
318 COG1255 Uncharacterized protei 92.0 1.4 3E-05 33.0 7.7 88 108-218 14-101 (129)
319 KOG1209|consensus 91.8 1.2 2.7E-05 37.4 8.1 75 108-188 7-89 (289)
320 PF05430 Methyltransf_30: S-ad 91.3 0.081 1.7E-06 40.7 0.8 77 159-271 32-109 (124)
321 cd08254 hydroxyacyl_CoA_DH 6-h 91.0 1.3 2.8E-05 40.2 8.6 95 107-219 165-263 (338)
322 KOG2651|consensus 90.9 0.39 8.4E-06 43.7 4.7 43 107-152 153-195 (476)
323 PF12692 Methyltransf_17: S-ad 90.8 0.11 2.3E-06 40.7 1.0 103 108-218 29-133 (160)
324 PRK03659 glutathione-regulated 90.5 0.82 1.8E-05 45.5 7.1 106 109-227 401-506 (601)
325 PRK10669 putative cation:proto 90.2 1.5 3.3E-05 43.2 8.8 97 109-218 418-514 (558)
326 PTZ00357 methyltransferase; Pr 90.2 1.8 3.8E-05 42.8 8.6 105 109-214 702-830 (1072)
327 COG0270 Dcm Site-specific DNA 89.6 4 8.8E-05 37.2 10.4 128 108-268 3-142 (328)
328 TIGR00675 dcm DNA-methyltransf 89.4 2.2 4.7E-05 38.8 8.5 66 111-188 1-67 (315)
329 COG0677 WecC UDP-N-acetyl-D-ma 89.4 1.1 2.4E-05 41.3 6.3 110 109-220 10-129 (436)
330 PRK07806 short chain dehydroge 89.3 1.3 2.9E-05 38.2 6.8 110 108-218 6-133 (248)
331 TIGR00497 hsdM type I restrict 88.9 8 0.00017 37.6 12.5 110 107-218 217-354 (501)
332 TIGR02822 adh_fam_2 zinc-bindi 88.9 3 6.6E-05 38.0 9.2 90 106-219 164-254 (329)
333 KOG2918|consensus 88.6 13 0.00028 33.3 12.1 158 108-271 88-275 (335)
334 cd05188 MDR Medium chain reduc 88.5 1.1 2.5E-05 38.9 5.9 95 107-219 134-232 (271)
335 cd08230 glucose_DH Glucose deh 87.9 2.1 4.6E-05 39.4 7.5 94 107-219 172-269 (355)
336 PF03514 GRAS: GRAS domain fam 87.8 9.8 0.00021 35.5 11.8 111 107-218 110-243 (374)
337 PRK05786 fabG 3-ketoacyl-(acyl 87.8 3.9 8.6E-05 34.9 8.8 110 108-219 5-135 (238)
338 COG1568 Predicted methyltransf 87.8 3.6 7.7E-05 36.1 8.0 107 104-219 149-260 (354)
339 PRK07533 enoyl-(acyl carrier p 87.7 2.5 5.3E-05 37.0 7.5 110 108-218 10-147 (258)
340 PRK03562 glutathione-regulated 87.2 1.8 4E-05 43.2 7.0 103 108-223 400-502 (621)
341 PRK12939 short chain dehydroge 87.1 4.7 0.0001 34.6 8.9 81 108-189 7-93 (250)
342 cd08237 ribitol-5-phosphate_DH 86.9 2.8 6.1E-05 38.4 7.7 93 107-219 163-256 (341)
343 PF03686 UPF0146: Uncharacteri 86.8 0.78 1.7E-05 35.1 3.2 91 108-221 14-104 (127)
344 PRK09880 L-idonate 5-dehydroge 86.8 3.5 7.5E-05 37.8 8.2 96 107-219 169-266 (343)
345 KOG2078|consensus 86.6 0.58 1.3E-05 43.3 2.8 60 106-169 248-310 (495)
346 PF10237 N6-adenineMlase: Prob 86.6 9.1 0.0002 30.9 9.5 97 108-219 26-123 (162)
347 PF06016 Reovirus_L2: Reovirus 86.4 5.6 0.00012 42.2 9.9 145 108-264 823-974 (1289)
348 PRK08265 short chain dehydroge 86.3 2.8 6.1E-05 36.6 7.1 78 108-189 6-89 (261)
349 PRK08324 short chain dehydroge 86.3 2.1 4.6E-05 43.3 7.1 110 107-218 421-556 (681)
350 cd08232 idonate-5-DH L-idonate 86.0 3.1 6.7E-05 37.9 7.5 94 107-218 165-261 (339)
351 TIGR00561 pntA NAD(P) transhyd 86.0 2.2 4.8E-05 41.2 6.6 102 105-217 161-282 (511)
352 PRK06701 short chain dehydroge 85.9 3.8 8.1E-05 36.6 7.8 110 108-218 46-180 (290)
353 PF03446 NAD_binding_2: NAD bi 85.6 1.4 3E-05 35.7 4.4 115 110-272 3-119 (163)
354 PRK06079 enoyl-(acyl carrier p 85.6 6.9 0.00015 34.0 9.2 81 107-190 6-93 (252)
355 PRK11524 putative methyltransf 85.2 0.76 1.7E-05 41.0 2.9 57 160-218 9-79 (284)
356 PRK10458 DNA cytosine methylas 85.1 20 0.00044 34.4 12.5 58 108-169 88-145 (467)
357 PRK07985 oxidoreductase; Provi 85.1 11 0.00024 33.7 10.4 111 107-218 48-184 (294)
358 PF00107 ADH_zinc_N: Zinc-bind 85.0 0.75 1.6E-05 35.3 2.5 87 117-221 1-91 (130)
359 PRK09291 short chain dehydroge 84.5 1.6 3.5E-05 37.9 4.7 80 109-189 3-82 (257)
360 PRK08594 enoyl-(acyl carrier p 84.2 3.3 7.1E-05 36.2 6.5 109 108-218 7-146 (257)
361 PRK09496 trkA potassium transp 84.2 4.1 8.8E-05 38.9 7.6 74 108-187 231-304 (453)
362 PRK05872 short chain dehydroge 84.1 14 0.00031 32.9 10.8 81 108-190 9-95 (296)
363 PRK07454 short chain dehydroge 83.4 4.2 9.2E-05 34.9 6.8 82 108-190 6-93 (241)
364 PRK07984 enoyl-(acyl carrier p 83.3 16 0.00035 32.0 10.5 82 108-190 6-94 (262)
365 PRK09496 trkA potassium transp 83.3 6.2 0.00013 37.7 8.5 97 110-218 2-98 (453)
366 COG1748 LYS9 Saccharopine dehy 83.3 2.9 6.3E-05 38.9 5.8 73 109-187 2-75 (389)
367 PRK06940 short chain dehydroge 83.2 3.9 8.4E-05 36.1 6.6 105 109-217 3-123 (275)
368 KOG3924|consensus 83.2 2 4.4E-05 39.5 4.7 109 105-219 190-308 (419)
369 PRK07417 arogenate dehydrogena 83.1 4.5 9.7E-05 36.0 6.9 86 110-215 2-87 (279)
370 PF07279 DUF1442: Protein of u 83.0 19 0.0004 30.5 9.9 101 108-218 42-147 (218)
371 PF05050 Methyltransf_21: Meth 82.8 2.6 5.5E-05 33.8 4.9 55 113-167 1-61 (167)
372 cd08255 2-desacetyl-2-hydroxye 82.7 6.7 0.00014 34.4 7.9 91 107-218 97-189 (277)
373 PRK06139 short chain dehydroge 82.6 2.5 5.5E-05 38.6 5.3 81 108-189 7-93 (330)
374 COG2933 Predicted SAM-dependen 82.6 7.6 0.00016 33.9 7.6 88 105-212 209-296 (358)
375 PRK06124 gluconate 5-dehydroge 82.5 4 8.7E-05 35.4 6.4 81 108-189 11-97 (256)
376 PF07109 Mg-por_mtran_C: Magne 81.8 12 0.00026 27.3 7.3 77 188-271 3-80 (97)
377 PRK07523 gluconate 5-dehydroge 81.6 4.3 9.4E-05 35.2 6.3 82 108-190 10-97 (255)
378 TIGR01202 bchC 2-desacetyl-2-h 81.5 6.3 0.00014 35.5 7.4 85 108-219 145-231 (308)
379 PRK06128 oxidoreductase; Provi 81.4 19 0.0004 32.2 10.4 110 108-218 55-190 (300)
380 PRK07814 short chain dehydroge 81.3 5 0.00011 35.1 6.5 80 108-188 10-95 (263)
381 KOG0821|consensus 81.3 2.4 5.3E-05 35.7 4.1 59 108-169 51-109 (326)
382 PRK08213 gluconate 5-dehydroge 81.0 4.8 0.0001 35.0 6.3 81 108-189 12-98 (259)
383 PRK12744 short chain dehydroge 80.5 5.2 0.00011 34.8 6.4 109 108-217 8-143 (257)
384 PRK06949 short chain dehydroge 80.2 5.6 0.00012 34.5 6.5 81 108-189 9-95 (258)
385 PRK07326 short chain dehydroge 80.2 5.7 0.00012 33.9 6.4 79 108-188 6-90 (237)
386 KOG1201|consensus 80.0 19 0.00041 32.1 9.4 83 106-190 36-124 (300)
387 PF11899 DUF3419: Protein of u 79.9 3.9 8.5E-05 38.1 5.5 44 105-152 33-76 (380)
388 PF05206 TRM13: Methyltransfer 79.8 5.9 0.00013 34.8 6.3 63 108-171 19-86 (259)
389 PRK06603 enoyl-(acyl carrier p 79.8 12 0.00025 32.7 8.4 81 108-189 8-95 (260)
390 PRK07677 short chain dehydroge 79.7 5.6 0.00012 34.4 6.3 79 109-188 2-86 (252)
391 KOG1227|consensus 79.1 0.83 1.8E-05 40.3 0.8 98 108-219 195-297 (351)
392 cd08245 CAD Cinnamyl alcohol d 79.0 13 0.00028 33.5 8.7 93 107-218 162-255 (330)
393 PRK07576 short chain dehydroge 78.9 5.9 0.00013 34.7 6.2 80 108-188 9-94 (264)
394 PRK07370 enoyl-(acyl carrier p 78.6 7 0.00015 34.1 6.6 110 108-218 6-146 (258)
395 PRK07666 fabG 3-ketoacyl-(acyl 78.6 6.3 0.00014 33.7 6.2 81 108-189 7-93 (239)
396 PRK06172 short chain dehydroge 78.3 6.6 0.00014 33.9 6.3 81 108-189 7-93 (253)
397 TIGR03451 mycoS_dep_FDH mycoth 78.2 4.5 9.7E-05 37.3 5.4 95 107-219 176-276 (358)
398 PRK08217 fabG 3-ketoacyl-(acyl 77.9 6.9 0.00015 33.6 6.3 81 108-189 5-91 (253)
399 PRK05867 short chain dehydroge 77.8 6.7 0.00014 34.0 6.2 81 108-189 9-95 (253)
400 cd08281 liver_ADH_like1 Zinc-d 77.7 5.3 0.00011 37.0 5.8 95 107-219 191-290 (371)
401 PRK05225 ketol-acid reductoiso 77.6 4.1 9E-05 38.6 4.9 89 108-218 36-130 (487)
402 PF02153 PDH: Prephenate dehyd 77.6 6.3 0.00014 34.6 5.9 76 122-217 2-77 (258)
403 cd08234 threonine_DH_like L-th 77.3 6.8 0.00015 35.4 6.3 95 107-219 159-257 (334)
404 PRK07890 short chain dehydroge 77.2 7.3 0.00016 33.7 6.3 81 108-189 5-91 (258)
405 PRK09072 short chain dehydroge 76.8 27 0.00058 30.3 9.8 81 108-190 5-90 (263)
406 PRK12937 short chain dehydroge 76.2 9.8 0.00021 32.5 6.8 111 108-219 5-139 (245)
407 PRK06113 7-alpha-hydroxysteroi 76.1 8.2 0.00018 33.5 6.3 81 108-189 11-97 (255)
408 PRK08159 enoyl-(acyl carrier p 76.0 16 0.00036 32.1 8.2 81 108-189 10-97 (272)
409 PRK06194 hypothetical protein; 75.9 7.4 0.00016 34.4 6.1 82 108-190 6-93 (287)
410 COG2084 MmsB 3-hydroxyisobutyr 75.9 8.3 0.00018 34.3 6.1 84 117-218 7-94 (286)
411 PRK06505 enoyl-(acyl carrier p 75.8 40 0.00086 29.6 10.6 82 108-190 7-95 (271)
412 PRK10537 voltage-gated potassi 75.5 11 0.00023 35.4 7.1 97 109-220 241-337 (393)
413 PRK08643 acetoin reductase; Va 75.4 8.5 0.00018 33.3 6.2 81 108-189 2-88 (256)
414 PRK08862 short chain dehydroge 75.4 8.3 0.00018 33.0 6.0 79 108-188 5-91 (227)
415 COG0686 Ald Alanine dehydrogen 75.0 8.1 0.00018 34.6 5.7 98 108-217 168-266 (371)
416 TIGR01963 PHB_DH 3-hydroxybuty 74.6 27 0.00058 30.0 9.2 59 110-169 3-61 (255)
417 PRK07035 short chain dehydroge 74.5 9.5 0.00021 32.9 6.3 81 108-189 8-94 (252)
418 PRK15057 UDP-glucose 6-dehydro 74.5 21 0.00046 33.5 8.8 35 117-152 7-41 (388)
419 PRK06997 enoyl-(acyl carrier p 74.4 17 0.00036 31.8 7.8 110 108-218 6-144 (260)
420 PRK13394 3-hydroxybutyrate deh 74.4 8.1 0.00018 33.5 5.8 82 108-190 7-94 (262)
421 PRK06181 short chain dehydroge 74.4 9.6 0.00021 33.1 6.3 80 109-189 2-87 (263)
422 TIGR00518 alaDH alanine dehydr 74.3 4 8.7E-05 38.0 4.0 100 107-218 166-266 (370)
423 PLN03154 putative allyl alcoho 74.2 8.6 0.00019 35.3 6.2 94 107-218 158-257 (348)
424 cd05278 FDH_like Formaldehyde 74.0 7.9 0.00017 35.2 5.9 98 107-218 167-266 (347)
425 PRK12826 3-ketoacyl-(acyl-carr 73.8 11 0.00025 32.2 6.6 81 108-189 6-92 (251)
426 PF03721 UDPG_MGDP_dh_N: UDP-g 73.7 3.1 6.7E-05 34.5 2.8 94 117-218 7-119 (185)
427 PRK07063 short chain dehydroge 73.5 11 0.00023 32.8 6.3 81 108-189 7-95 (260)
428 PRK08339 short chain dehydroge 73.5 11 0.00024 33.0 6.4 81 108-189 8-94 (263)
429 PRK05876 short chain dehydroge 73.5 10 0.00022 33.5 6.3 82 108-190 6-93 (275)
430 cd08261 Zn_ADH7 Alcohol dehydr 73.4 6.2 0.00013 35.8 5.0 98 107-218 159-257 (337)
431 TIGR03206 benzo_BadH 2-hydroxy 73.3 11 0.00024 32.4 6.3 61 108-169 3-63 (250)
432 PRK07024 short chain dehydroge 73.2 12 0.00026 32.5 6.6 81 108-190 2-88 (257)
433 PRK07774 short chain dehydroge 73.2 11 0.00023 32.4 6.3 81 108-189 6-92 (250)
434 PF14740 DUF4471: Domain of un 73.0 6.2 0.00013 35.1 4.6 66 178-270 220-286 (289)
435 PRK06035 3-hydroxyacyl-CoA deh 72.6 15 0.00032 32.8 7.1 95 109-217 4-119 (291)
436 PRK11064 wecC UDP-N-acetyl-D-m 72.3 8 0.00017 36.6 5.5 105 109-219 4-119 (415)
437 cd01842 SGNH_hydrolase_like_5 72.2 8.4 0.00018 31.5 4.7 46 177-222 47-102 (183)
438 COG0569 TrkA K+ transport syst 72.1 4.9 0.00011 34.5 3.7 72 110-187 2-73 (225)
439 TIGR02825 B4_12hDH leukotriene 72.1 18 0.00038 32.7 7.6 95 107-218 138-236 (325)
440 PRK07109 short chain dehydroge 71.9 14 0.0003 33.8 6.9 81 108-189 8-94 (334)
441 TIGR03366 HpnZ_proposed putati 71.8 7.7 0.00017 34.3 5.1 97 107-219 120-218 (280)
442 PLN02896 cinnamyl-alcohol dehy 71.6 23 0.0005 32.5 8.4 80 107-189 9-88 (353)
443 PRK06077 fabG 3-ketoacyl-(acyl 71.5 16 0.00035 31.3 7.0 110 108-218 6-139 (252)
444 PRK05866 short chain dehydroge 71.5 12 0.00026 33.4 6.3 81 108-189 40-126 (293)
445 PRK08293 3-hydroxybutyryl-CoA 71.4 11 0.00025 33.5 6.1 97 109-218 4-119 (287)
446 TIGR02415 23BDH acetoin reduct 71.3 36 0.00078 29.2 9.2 59 110-169 2-60 (254)
447 PRK12429 3-hydroxybutyrate deh 71.2 12 0.00025 32.3 6.1 81 108-189 4-90 (258)
448 PRK07097 gluconate 5-dehydroge 71.1 13 0.00027 32.5 6.3 82 108-190 10-97 (265)
449 PRK05653 fabG 3-ketoacyl-(acyl 71.0 12 0.00027 31.8 6.1 62 108-170 5-66 (246)
450 PRK08085 gluconate 5-dehydroge 71.0 13 0.00027 32.2 6.2 81 108-189 9-95 (254)
451 PRK07102 short chain dehydroge 70.6 12 0.00027 32.0 6.0 79 109-188 2-84 (243)
452 PRK09260 3-hydroxybutyryl-CoA 70.4 10 0.00022 33.9 5.5 99 110-221 3-119 (288)
453 KOG1269|consensus 70.0 12 0.00026 34.6 5.9 108 107-221 180-315 (364)
454 cd00401 AdoHcyase S-adenosyl-L 69.9 18 0.00038 34.2 7.1 89 107-220 201-290 (413)
455 PRK05650 short chain dehydroge 69.9 14 0.0003 32.4 6.2 80 110-190 2-87 (270)
456 PLN02253 xanthoxin dehydrogena 69.8 15 0.00033 32.2 6.6 80 108-189 18-103 (280)
457 PRK08655 prephenate dehydrogen 69.8 20 0.00044 34.1 7.7 87 110-216 2-89 (437)
458 PRK08589 short chain dehydroge 69.6 14 0.0003 32.4 6.2 80 108-189 6-91 (272)
459 PRK09242 tropinone reductase; 68.9 14 0.00031 31.9 6.1 81 108-189 9-97 (257)
460 TIGR00872 gnd_rel 6-phosphoglu 68.8 25 0.00054 31.5 7.7 90 110-218 2-91 (298)
461 PRK07478 short chain dehydroge 68.7 16 0.00035 31.5 6.4 81 108-189 6-92 (254)
462 PRK08251 short chain dehydroge 68.4 15 0.00033 31.5 6.1 81 108-189 2-90 (248)
463 PRK06138 short chain dehydroge 68.3 16 0.00034 31.4 6.2 80 108-189 5-90 (252)
464 PRK07502 cyclohexadienyl dehyd 68.2 20 0.00044 32.3 7.0 90 108-216 6-97 (307)
465 COG0604 Qor NADPH:quinone redu 68.2 9.8 0.00021 34.7 5.0 98 108-220 143-242 (326)
466 PRK12829 short chain dehydroge 68.1 16 0.00035 31.6 6.3 79 108-189 11-95 (264)
467 PRK08267 short chain dehydroge 67.7 16 0.00036 31.6 6.3 77 110-189 3-86 (260)
468 PRK07904 short chain dehydroge 67.5 17 0.00036 31.6 6.2 80 108-188 8-95 (253)
469 PF02558 ApbA: Ketopantoate re 67.4 12 0.00025 29.5 4.8 96 117-221 5-103 (151)
470 cd08294 leukotriene_B4_DH_like 67.4 22 0.00048 31.9 7.3 93 107-218 143-240 (329)
471 PRK07453 protochlorophyllide o 67.4 19 0.00041 32.6 6.7 81 108-189 6-92 (322)
472 PRK06522 2-dehydropantoate 2-r 67.3 39 0.00084 30.1 8.7 101 110-222 2-103 (304)
473 PF03807 F420_oxidored: NADP o 67.1 6.6 0.00014 28.2 3.0 82 117-216 6-91 (96)
474 PRK07530 3-hydroxybutyryl-CoA 66.9 22 0.00047 31.8 6.9 99 109-221 5-121 (292)
475 KOG0023|consensus 66.8 7.5 0.00016 35.0 3.7 99 106-220 180-280 (360)
476 cd08293 PTGR2 Prostaglandin re 66.6 11 0.00024 34.3 5.1 92 109-218 156-253 (345)
477 PRK05808 3-hydroxybutyryl-CoA 66.1 24 0.00052 31.3 7.0 96 110-219 5-118 (282)
478 PRK07819 3-hydroxybutyryl-CoA 66.0 17 0.00038 32.4 6.1 99 109-221 6-123 (286)
479 PRK08703 short chain dehydroge 65.8 19 0.00042 30.7 6.3 61 108-169 6-67 (239)
480 COG5379 BtaA S-adenosylmethion 65.8 13 0.00029 32.9 5.0 76 139-220 292-367 (414)
481 COG0287 TyrA Prephenate dehydr 65.6 12 0.00025 33.3 4.8 89 109-216 4-95 (279)
482 cd05285 sorbitol_DH Sorbitol d 65.5 25 0.00054 32.0 7.2 95 107-219 162-265 (343)
483 PLN02545 3-hydroxybutyryl-CoA 65.4 13 0.00027 33.3 5.1 95 109-217 5-117 (295)
484 PRK07775 short chain dehydroge 65.4 60 0.0013 28.4 9.5 61 108-169 10-70 (274)
485 PRK12384 sorbitol-6-phosphate 65.4 17 0.00037 31.4 5.9 81 108-189 2-90 (259)
486 PRK06125 short chain dehydroge 64.8 21 0.00045 30.9 6.3 81 108-189 7-90 (259)
487 PRK08303 short chain dehydroge 64.7 19 0.00041 32.4 6.1 80 108-188 8-103 (305)
488 PF12242 Eno-Rase_NADH_b: NAD( 64.6 12 0.00025 26.0 3.5 34 108-142 39-73 (78)
489 COG0863 DNA modification methy 64.6 12 0.00025 33.5 4.8 47 105-155 220-266 (302)
490 PRK08277 D-mannonate oxidoredu 64.4 20 0.00043 31.5 6.2 81 108-189 10-96 (278)
491 PTZ00142 6-phosphogluconate de 63.7 16 0.00035 35.2 5.7 94 111-215 4-97 (470)
492 KOG2360|consensus 63.6 13 0.00028 34.3 4.6 67 102-169 208-275 (413)
493 PLN02989 cinnamyl-alcohol dehy 63.5 9.7 0.00021 34.4 4.1 80 108-189 5-86 (325)
494 PRK07062 short chain dehydroge 63.3 21 0.00046 31.0 6.1 81 108-189 8-96 (265)
495 cd08295 double_bond_reductase_ 63.2 22 0.00048 32.3 6.4 97 107-218 151-250 (338)
496 PRK05708 2-dehydropantoate 2-r 63.2 83 0.0018 28.3 10.0 100 109-223 3-108 (305)
497 PRK06484 short chain dehydroge 63.1 27 0.00059 34.0 7.4 108 107-218 268-399 (520)
498 PRK06500 short chain dehydroge 63.0 29 0.00063 29.7 6.9 78 108-189 6-89 (249)
499 PRK12823 benD 1,6-dihydroxycyc 63.0 23 0.00049 30.7 6.2 79 108-188 8-92 (260)
500 PRK15182 Vi polysaccharide bio 62.9 46 0.001 31.6 8.5 100 108-219 6-120 (425)
No 1
>KOG2361|consensus
Probab=100.00 E-value=7.7e-44 Score=292.29 Aligned_cols=264 Identities=51% Similarity=0.933 Sum_probs=240.5
Q ss_pred CCCCHHHHHHHHHHHhhccccCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCe
Q psy11741 31 VQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKN 110 (352)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 110 (352)
++|++++.+.++..+.++...........+|...+.+|||.||..+.++|+++++|+.+.++.+.+..+ ....+
T Consensus 1 ~~wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~------~~~~~ 74 (264)
T KOG2361|consen 1 VEWSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDE------KSAET 74 (264)
T ss_pred CCcCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccc------cChhh
Confidence 468999999999999999999999999999999999999999999999999999999999999998753 22348
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
||+||||.|....++.+...+++..++++|.|+.+++..+++......++...+.|++.+.+.-+...+++|+|++.++|
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL 154 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL 154 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE
Confidence 99999999999999999876566999999999999999999988777888889999998766667778999999999999
Q ss_pred hccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 191 DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
..++++....++++++++|||||.|++.+++..+..++++..+.++..++|.+++|+.
T Consensus 155 SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~---------------------- 212 (264)
T KOG2361|consen 155 SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTR---------------------- 212 (264)
T ss_pred eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCce----------------------
Confidence 9999999999999999999999999999999999999999999998888888777754
Q ss_pred eeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchhhhhhhhhhhhhccccccceeeeeeehhccCC
Q psy11741 271 NLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKYMKP 350 (352)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 350 (352)
.|+|+.++|..++++|||..+++.+++++.|+|+.+++|||+|+||+|.||
T Consensus 213 -----------------------------~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 213 -----------------------------AYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred -----------------------------eeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecC
Confidence 356788888889999999999999999999999999999999999999999
Q ss_pred C
Q psy11741 351 L 351 (352)
Q Consensus 351 ~ 351 (352)
+
T Consensus 264 ~ 264 (264)
T KOG2361|consen 264 L 264 (264)
T ss_pred C
Confidence 5
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=1.2e-24 Score=184.51 Aligned_cols=195 Identities=26% Similarity=0.421 Sum_probs=150.3
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
.....|++++.+| |..- ...+|..++.|.......+... ++.+|||||||||.++..+++.. +..+
T Consensus 12 ~v~~vF~~ia~~Y-D~~n--~~~S~g~~~~Wr~~~i~~~~~~---------~g~~vLDva~GTGd~a~~~~k~~--g~g~ 77 (238)
T COG2226 12 KVQKVFDKVAKKY-DLMN--DLMSFGLHRLWRRALISLLGIK---------PGDKVLDVACGTGDMALLLAKSV--GTGE 77 (238)
T ss_pred HHHHHHHhhHHHH-Hhhc--ccccCcchHHHHHHHHHhhCCC---------CCCEEEEecCCccHHHHHHHHhc--CCce
Confidence 4567788888888 4321 2347778888887777655433 38999999999999999999987 4779
Q ss_pred EEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
|+|+|+|+.|++.|+++....+ .++.|+++|+. .+|+++++||+|.+.+.|+++ .+..++|++++|+|||||+
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe----~LPf~D~sFD~vt~~fglrnv--~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE----NLPFPDNSFDAVTISFGLRNV--TDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccceEEEEechh----hCCCCCCccCEEEeeehhhcC--CCHHHHHHHHHHhhcCCeE
Confidence 9999999999999999987633 44999999998 788999999999999999999 7999999999999999999
Q ss_pred EEEEeCCCCchhhHh-------hh-----cCcccc--CceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 215 VLFRDYGRYDLVQLR-------FK-----KGRCLQ--DNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 215 l~~~~~~~~~~~~~~-------~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
+++.++..+....+. +. .+.... ...|.....+...+++.+++..+++++||..+.
T Consensus 152 ~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 152 LLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 999998776543321 11 011111 111111122333478899999999999999877
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=1.9e-25 Score=191.83 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=92.1
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
.+.+.|+.++..| |... ...+|..+..|.......+... ++.+|||+|||||..+..+++..+ +..+
T Consensus 8 ~v~~~Fd~ia~~Y-D~~n--~~ls~g~~~~wr~~~~~~~~~~---------~g~~vLDv~~GtG~~~~~l~~~~~-~~~~ 74 (233)
T PF01209_consen 8 YVRKMFDRIAPRY-DRMN--DLLSFGQDRRWRRKLIKLLGLR---------PGDRVLDVACGTGDVTRELARRVG-PNGK 74 (233)
T ss_dssp --------------------------------SHHHHHHT-----------S--EEEEET-TTSHHHHHHGGGSS----E
T ss_pred HHHHHHHHHHHHh-CCCc--cccCCcHHHHHHHHHHhccCCC---------CCCEEEEeCCChHHHHHHHHHHCC-CccE
Confidence 3567888888888 5332 2236677778877555544332 378999999999999999998765 5679
Q ss_pred EEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
|+|+|+|+.|++.|+++.... ..+++++++|+. .+|+++++||+|++.+.++++ .++.+++++++|+|||||.
T Consensus 75 v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~----~lp~~d~sfD~v~~~fglrn~--~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 75 VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE----DLPFPDNSFDAVTCSFGLRNF--PDRERALREMYRVLKPGGR 148 (233)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT----B--S-TT-EEEEEEES-GGG---SSHHHHHHHHHHHEEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH----HhcCCCCceeEEEHHhhHHhh--CCHHHHHHHHHHHcCCCeE
Confidence 999999999999999987753 358999999998 678889999999999999999 7889999999999999999
Q ss_pred EEEEeCCCCchhhHhhh-----------cCccccC--ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 215 VLFRDYGRYDLVQLRFK-----------KGRCLQD--NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 215 l~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+++.+++.+....+... .+..+.. ..|.....+...+.+.+++.++++++||+.+..
T Consensus 149 l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 149 LVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp EEEEEEEB-SSHHHHHHHHH--------------------------------------------------
T ss_pred EEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99998877654332210 0111111 123333345556889999999999999997764
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.91 E-value=7.2e-24 Score=189.74 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=142.2
Q ss_pred ccCCCHHHHHHhhHHhhhhHHHHhhhcc-ccccc-chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHh
Q psy11741 50 VLQIDKNLIQTLNEDVAKNWDAFYNVHQ-NRFFK-DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127 (352)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~yw~~~y~~~~-~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~ 127 (352)
..++++....+|++.+..||+..-.... ..+.. ...++...+...++.... .....++.+|||||||+|.++..+++
T Consensus 73 ~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~-~~~~~~g~~ILDIGCG~G~~s~~La~ 151 (322)
T PLN02396 73 TTSLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS-SAKPFEGLKFIDIGCGGGLLSEPLAR 151 (322)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh-hccCCCCCEEEEeeCCCCHHHHHHHH
Confidence 3578999999999999999984111000 00001 111222222111111000 01123477999999999999999987
Q ss_pred hcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHH
Q psy11741 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 128 ~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
.+.+|+|+|+|+.|++.|+++....+ .++.+.++|+. .+++.+++||+|++..+++|+ .+...+++++
T Consensus 152 ----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae----~l~~~~~~FD~Vi~~~vLeHv--~d~~~~L~~l 221 (322)
T PLN02396 152 ----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE----KLADEGRKFDAVLSLEVIEHV--ANPAEFCKSL 221 (322)
T ss_pred ----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH----HhhhccCCCCEEEEhhHHHhc--CCHHHHHHHH
Confidence 67899999999999999998764322 47899999986 445557899999999999999 6788999999
Q ss_pred HHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 206 YKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 206 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++|||||.+++.+++..................+...+......+++++++..+++++||++++.
T Consensus 222 ~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 222 SALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 999999999999988765322111111100001111111222334789999999999999999876
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.91 E-value=1.2e-24 Score=180.88 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=148.8
Q ss_pred cCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 51 LQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 51 ~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
..++....++|.+.+..|||....-. ....-.......+.+.+... ...++.+|||+|||.|.++.++|+
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~--~LH~~N~~rl~~i~~~~~~~-----~~l~g~~vLDvGCGgG~Lse~mAr--- 79 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFK--PLHKINPLRLDYIREVARLR-----FDLPGLRVLDVGCGGGILSEPLAR--- 79 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCcee--eeeeeccchhhhhhhhhhcc-----cCCCCCeEEEecCCccHhhHHHHH---
Confidence 46788889999999999998422211 11110000001111111100 012489999999999999999999
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
.|++|+|+|+|+.+++.|+.++...+.++.+.+..+.+ +....++||+|+|..+++|+ +++..+++.+.+++|
T Consensus 80 -~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----l~~~~~~FDvV~cmEVlEHv--~dp~~~~~~c~~lvk 152 (243)
T COG2227 80 -LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----LASAGGQFDVVTCMEVLEHV--PDPESFLRACAKLVK 152 (243)
T ss_pred -CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----HHhcCCCccEEEEhhHHHcc--CCHHHHHHHHHHHcC
Confidence 78999999999999999999988877777788877763 33334899999999999999 788899999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
|||.++++++++.....+....+...--.+.+.+......+.-++++...+..+|+.+.+..
T Consensus 153 P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~ 214 (243)
T COG2227 153 PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRK 214 (243)
T ss_pred CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeec
Confidence 99999999999876655543332222122344444444568899999999999999888764
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.89 E-value=2.7e-22 Score=176.24 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=135.4
Q ss_pred HHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCe
Q psy11741 55 KNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV 134 (352)
Q Consensus 55 ~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~ 134 (352)
+...+.|+..+..| |..... ..+..+..|...... ++. ..++.+|||+|||+|.++..+++... +..
T Consensus 33 ~~v~~~f~~~A~~Y-D~~~~~--~s~g~~~~~r~~~~~-~~~--------~~~~~~VLDlGcGtG~~~~~la~~~~-~~~ 99 (261)
T PLN02233 33 NERQALFNRIAPVY-DNLNDL--LSLGQHRIWKRMAVS-WSG--------AKMGDRVLDLCCGSGDLAFLLSEKVG-SDG 99 (261)
T ss_pred HHHHHHHHHhhhHH-HHhhhh--hcCChhHHHHHHHHH-HhC--------CCCCCEEEEECCcCCHHHHHHHHHhC-CCC
Confidence 34567788888776 432211 123334444332222 222 12378999999999999998887643 456
Q ss_pred EEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 135 FVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 135 ~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
+|+|+|+|+.|++.|+++... ...++.++++|+. .+|+++++||+|++.++++++ +++..++++++++||
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~----~lp~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLk 173 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT----DLPFDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLK 173 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc----cCCCCCCCEeEEEEecccccC--CCHHHHHHHHHHHcC
Confidence 899999999999999876431 2357899999987 567778999999999999999 688999999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhh-----------cCccccC-ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFK-----------KGRCLQD-NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
|||.+++.++..+........ .+..... ..+.........+++.+++.++++++||+.+..
T Consensus 174 pGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~ 246 (261)
T PLN02233 174 PGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKH 246 (261)
T ss_pred cCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEE
Confidence 999999998876543211100 0000000 000000112234789999999999999998865
No 7
>KOG1270|consensus
Probab=99.88 E-value=2.1e-22 Score=168.41 Aligned_cols=202 Identities=23% Similarity=0.275 Sum_probs=139.5
Q ss_pred cccCCCHHHHHHhhHHhhhhHHHHh------hhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccH
Q psy11741 49 SVLQIDKNLIQTLNEDVAKNWDAFY------NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122 (352)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~yw~~~y------~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~ 122 (352)
+...++.+..++|.+.+..+||+-- ..+..++.--+.-.....+...|.. .+.-+.+|||+|||+|.++
T Consensus 30 s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~-----k~~~g~~ilDvGCGgGLLS 104 (282)
T KOG1270|consen 30 STTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGS-----KPLLGMKILDVGCGGGLLS 104 (282)
T ss_pred ceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCc-----cccCCceEEEeccCccccc
Confidence 3345666789999999999999522 2221111000000111111111110 1223688999999999999
Q ss_pred HHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---C----ceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---D----RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 123 ~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~----~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
.+||+ -|++|+|+|+++.|++.|+++....+ . ++.+...|+... .+.||.|+|..+++|+
T Consensus 105 epLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevleHV-- 171 (282)
T KOG1270|consen 105 EPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVLEHV-- 171 (282)
T ss_pred hhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHHHHH--
Confidence 99999 77899999999999999999844332 2 255666666532 3569999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccC---ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD---NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++..+++.+.++|||||.+++.+.++....+. .+..+.+ .+.+.+......|.++.++..+++.+++.+...
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~---~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFA---GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 999999999999999999999999887543322 1111111 123344455567899999999999999887765
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=2.1e-20 Score=164.37 Aligned_cols=196 Identities=19% Similarity=0.308 Sum_probs=134.3
Q ss_pred HHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEE
Q psy11741 59 QTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYG 138 (352)
Q Consensus 59 ~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~g 138 (352)
..|++++.+|-+..|+........ ..+.+.+..++... ..++.+|||+|||+|.++..+++ .+.+|+|
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~--~~~~~~~~~~l~~l------~~~~~~vLDiGcG~G~~a~~la~----~g~~v~~ 71 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQ--AILWQDLDRLLAEL------PPRPLRVLDAGGGEGQTAIKLAE----LGHQVIL 71 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHH--HHHHHHHHHHHHhc------CCCCCEEEEeCCCchHHHHHHHH----cCCEEEE
Confidence 467888888877777653322111 11223333344332 12367999999999999999998 6679999
Q ss_pred EeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 139 CDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 139 vD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
+|+|+.|++.|+++....+ .+++++++|+.+. .++.+++||+|++..+++|+ .++..+++++.++|||||+++
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l---~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI---AQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH---hhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEE
Confidence 9999999999998876543 5788999998742 12346799999999999999 677899999999999999999
Q ss_pred EEeCCCCchhhHhhhcCcc--ccCceee--cCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 217 FRDYGRYDLVQLRFKKGRC--LQDNFYA--RGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+..++...........+.. ....... .........++++++..+++++||+++..
T Consensus 147 i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 147 LMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred EEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 8877654321111111100 0000000 01111224578999999999999999865
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.84 E-value=3.8e-20 Score=160.61 Aligned_cols=197 Identities=19% Similarity=0.333 Sum_probs=135.2
Q ss_pred HHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEE
Q psy11741 57 LIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136 (352)
Q Consensus 57 ~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v 136 (352)
....|+..+..| |.+.. ...+.....|....+..+. ..++.+|||+|||+|.++..+++... ++.+|
T Consensus 7 ~~~~f~~~a~~y-d~~~~--~~~~~~~~~~~~~~l~~l~---------~~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v 73 (231)
T TIGR02752 7 VHKVFEKIYKKY-DRMNS--VISFQRHKKWRKDTMKRMN---------VQAGTSALDVCCGTADWSIALAEAVG-PEGHV 73 (231)
T ss_pred HHHHHHHhhhHH-hHHHH--HhcCCchHHHHHHHHHhcC---------CCCCCEEEEeCCCcCHHHHHHHHHhC-CCCEE
Confidence 456666666666 54321 1234455566544444332 22378999999999999999988753 56699
Q ss_pred EEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 137 YGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 137 ~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
+|+|+|+.|++.|+++.... ..++.++.+|+.. +++++++||+|++..+++++ ++...+++++.++|+|||.+
T Consensus 74 ~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 74 IGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME----LPFDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKV 147 (231)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEechhc----CCCCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEE
Confidence 99999999999999886542 2578999999873 44567899999999999988 67789999999999999999
Q ss_pred EEEeCCCCchhhHhhh-----------cCccccCce--eecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 216 LFRDYGRYDLVQLRFK-----------KGRCLQDNF--YARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 216 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
++.+...++....... .+..+.... +....+....+++.+++.++++++||.+++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 148 VCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred EEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 9887655433211100 000000000 00001123356889999999999999988764
No 10
>KOG1540|consensus
Probab=99.84 E-value=6.2e-20 Score=152.62 Aligned_cols=195 Identities=21% Similarity=0.339 Sum_probs=139.9
Q ss_pred HHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCC----CC
Q psy11741 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN----DN 133 (352)
Q Consensus 58 ~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~----~~ 133 (352)
-..|...+..| |..+.. .+...++-|.......+-|. ++.++||+|||||.++..+.+.... .+
T Consensus 63 ~~vF~~vA~~Y-D~mND~--mSlGiHRlWKd~~v~~L~p~---------~~m~~lDvaGGTGDiaFril~~v~s~~~~~~ 130 (296)
T KOG1540|consen 63 HHVFESVAKKY-DIMNDA--MSLGIHRLWKDMFVSKLGPG---------KGMKVLDVAGGTGDIAFRILRHVKSQFGDRE 130 (296)
T ss_pred HHHHHHHHHHH-HHHHHH--hhcchhHHHHHHhhhccCCC---------CCCeEEEecCCcchhHHHHHHhhccccCCCC
Confidence 34556666665 443322 23445555654444544443 3799999999999999999987732 23
Q ss_pred eEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 134 VFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 134 ~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
.+|+++|+|+.|+..++++.... ...+.++++|+. .+|+++.+||..++.+.|.++ .++.+.|++++|+|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE----~LpFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVL 204 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE----DLPFDDDSFDAYTIAFGIRNV--THIQKALREAYRVL 204 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc----cCCCCCCcceeEEEecceecC--CCHHHHHHHHHHhc
Confidence 78999999999999999987442 245899999998 788999999999999999988 89999999999999
Q ss_pred CCCEEEEEEeCCCCchhhHh-hhc----------CccccC--ceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 210 KPGGMVLFRDYGRYDLVQLR-FKK----------GRCLQD--NFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 210 kpgG~l~~~~~~~~~~~~~~-~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
||||+|.+.+++..+...+. +-. +..+.. ..|.....+...+.+.+++..+++++||..+.
T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 99999999988765522221 110 100000 00111223344578999999999999999886
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=1.3e-19 Score=159.38 Aligned_cols=151 Identities=21% Similarity=0.327 Sum_probs=115.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||||||+|..+..++.. .+.+|+|+|+|+.|++.|+++... ..++.+..+|+. ..++++++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~---~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~----~~~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK---YGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDIL----KKDFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh---cCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcc----cCCCCCCCeEEEE
Confidence 34789999999999999988874 456999999999999999988654 357899999987 4456688999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|++..+...++++++++|||||.+++.++........... .. . +. ......+.+.+++..+++++|
T Consensus 123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~----~~-~-~~--~~~~~~~~~~~~~~~~l~~aG 194 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEE----FK-A-YI--KKRKYTLIPIQEYGDLIKSCN 194 (263)
T ss_pred EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHH----HH-H-HH--HhcCCCCCCHHHHHHHHHHCC
Confidence 9999999866689999999999999999999987644321000000 00 0 00 001123468999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 195 F~~v~~~ 201 (263)
T PTZ00098 195 FQNVVAK 201 (263)
T ss_pred CCeeeEE
Confidence 9998763
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=159.17 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..++..+ ++.+|+|+|+|+.|++.|+++ ++.++++|+.. ++ ++++||+|++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~--p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~----~~-~~~~fD~v~~ 95 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW--PGAVIEALDSSPEMVAAARER------GVDARTGDVRD----WK-PKPDTDVVVS 95 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHhc------CCcEEEcChhh----CC-CCCCceEEEE
Confidence 37899999999999999999876 678999999999999999764 47889999863 22 3578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh----hhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR----FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+.++||+ .++..++++++++|||||.+++..++........ ......+..............+.+.+++.++++
T Consensus 96 ~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWV--PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhC--CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 9999999 6788999999999999999999755422111110 000000000000000111223568999999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
++||++.....
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998655443
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=2.7e-19 Score=163.17 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=114.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.+.++|+. .+++++++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~----~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL----NQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc----cCCCCCCCccE
Confidence 357899999999999999999853 5699999999999999998765432 57999999987 45677899999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh--hhc-CccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--FKK-GRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
|++..+++|+ .+...++++++++|||||.|++.++......... ... ...+..... .......+.+.+++..+
T Consensus 190 V~s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~p~~~s~~~~~~~ 265 (340)
T PLN02244 190 VWSMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC--AAYYLPAWCSTSDYVKL 265 (340)
T ss_pred EEECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHH--hhccCCCCCCHHHHHHH
Confidence 9999999999 6788999999999999999999875432110000 000 000000000 00001123589999999
Q ss_pred HHhCCCceEEee
Q psy11741 261 FESAGFVEKQNL 272 (352)
Q Consensus 261 l~~~Gf~~~~~~ 272 (352)
++++||..+...
T Consensus 266 l~~aGf~~v~~~ 277 (340)
T PLN02244 266 AESLGLQDIKTE 277 (340)
T ss_pred HHHCCCCeeEee
Confidence 999999998753
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=3.3e-19 Score=155.80 Aligned_cols=107 Identities=21% Similarity=0.470 Sum_probs=91.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.+..++.+++|+|+|+.|++.|+++.... ..++.++++|+.+ +++ ..+|+|+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~D~vv 130 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENASMVV 130 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh----CCC--CCCCEEe
Confidence 7799999999999998888754337889999999999999999987653 2479999999874 333 3599999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.++||+++++...++++++++|||||.|++.+.
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999877788999999999999999999874
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=1.3e-19 Score=148.24 Aligned_cols=138 Identities=29% Similarity=0.486 Sum_probs=103.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++. .++.....+.. ....++++||+|+|.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~----~~~~~~g~D~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK----RGFEVTGVDISPQMIEK---------RNVVFDNFDAQ----DPPFPDGSFDLIICN 85 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH----TTSEEEEEESSHHHHHH---------TTSEEEEEECH----THHCHSSSEEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHH----hCCEEEEEECCHHHHhh---------hhhhhhhhhhh----hhhccccchhhHhhH
Confidence 78999999999999999977 55699999999999988 11233333322 122347899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .++..+|+++.++|||||++++.++.........+.. ..+....+.+..+++.+++..+++++||+
T Consensus 86 ~~l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 86 DVLEHL--PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLK------WRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp SSGGGS--SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHH------CCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred HHHhhc--ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHh------cCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 999999 6899999999999999999999987754211111111 01111111344679999999999999999
Q ss_pred eEE
Q psy11741 268 EKQ 270 (352)
Q Consensus 268 ~~~ 270 (352)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=8.5e-19 Score=134.37 Aligned_cols=106 Identities=24% Similarity=0.408 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecC-CCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDV-TSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~ 183 (352)
|+.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++.. ....+++++++|+ .. .. ..+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~-~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF--PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD----PD-FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG----TT-TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC----cc-cCCCCCE
Confidence 37899999999999999999965 88899999999999999999983 3458999999999 32 11 2456999
Q ss_pred EEehh-hhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIF-VLDAI-NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++.. +++++ +.++...+++.+++.|+|||++++.+
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99998 55544 33678899999999999999999974
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=1.3e-17 Score=146.39 Aligned_cols=140 Identities=16% Similarity=0.289 Sum_probs=109.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. .+.+++|+|+|+.|++.|+++.. ...++++|+. .+++++++||+|+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~----~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIE----SLPLATATFDLAWSN 110 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcc----cCcCCCCcEEEEEEC
Confidence 67899999999999988877 66799999999999999988753 2467889986 455667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++++ .++..++.++.++|+|||.+++..++......+.-.... . ........+++.+++..++...|+.
T Consensus 111 ~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~-~------~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 111 LAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA-V------DERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred chhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH-h------ccCCccccCCCHHHHHHHHHhCCce
Confidence 999988 788999999999999999999998776544333211100 0 0112233578899999999988876
Q ss_pred e
Q psy11741 268 E 268 (352)
Q Consensus 268 ~ 268 (352)
.
T Consensus 182 ~ 182 (251)
T PRK10258 182 H 182 (251)
T ss_pred e
Confidence 4
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=2.3e-18 Score=165.00 Aligned_cols=146 Identities=25% Similarity=0.422 Sum_probs=113.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|..+..+++. .+.+|+|+|+|+.|++.|+++......++.+.++|+.. .++++++||+|++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~I~s 338 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN---FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK----KTYPDNSFDVIYS 338 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh---cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc----CCCCCCCEEEEEE
Confidence 4779999999999999999885 45689999999999999998876555678999999873 4456789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh-HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ-LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+++|+ .++..++++++++|||||.+++.++....... ..+. .+. ...+ ....+.+++.++++++|
T Consensus 339 ~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~-~~~g--~~~~~~~~~~~~l~~aG 406 (475)
T PLN02336 339 RDTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA-------EYI-KQRG--YDLHDVQAYGQMLKDAG 406 (475)
T ss_pred CCccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH-------HHH-HhcC--CCCCCHHHHHHHHHHCC
Confidence 9999999 67889999999999999999998764322100 0000 000 0001 13468899999999999
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|.++..
T Consensus 407 F~~i~~ 412 (475)
T PLN02336 407 FDDVIA 412 (475)
T ss_pred Ceeeee
Confidence 999865
No 19
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.79 E-value=3.6e-18 Score=148.39 Aligned_cols=201 Identities=18% Similarity=0.222 Sum_probs=133.3
Q ss_pred CCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCC
Q psy11741 52 QIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131 (352)
Q Consensus 52 ~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~ 131 (352)
++.+..+..|+..++.||+..-.... ...-.......+...+. ..++.+|||+|||+|.++..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~--------~~~~~~vLdiG~G~G~~~~~l~~---- 68 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWDPNGEFKP--LHRINPLRLNYIREHAG--------GLFGKRVLDVGCGGGILSESMAR---- 68 (233)
T ss_pred cccHHHHHHHHHHHHHHhccCCCcHH--HHHhhHHHHHHHHHhcc--------CCCCCeEEEeCCCCCHHHHHHHH----
Confidence 45677899999999999985321111 00101111122222221 22478999999999999988887
Q ss_pred CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCC
Q psy11741 132 DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211 (352)
Q Consensus 132 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 211 (352)
.+.+++++|+++.+++.|+++....+..+.+...|+.+. .....++||+|++..+++++ .+...+++.+.++|+|
T Consensus 69 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~ 143 (233)
T PRK05134 69 LGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL---AAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKP 143 (233)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh---hhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCC
Confidence 456899999999999999987654444677777777642 11235789999999999998 6778899999999999
Q ss_pred CEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 212 GGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 212 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
||.+++..+..............................+++.+++.++++++||.++..
T Consensus 144 gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 144 GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 999999876543211110000000000001111222345689999999999999999876
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.79 E-value=3.5e-18 Score=154.23 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..++... + ..|+|+|+|+.|+..++..... ...++.++.+|+. .+++ +++||+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g--~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e----~lp~-~~~FD~V 193 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG--A-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE----QLPA-LKAFDTV 193 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--C-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH----HCCC-cCCcCEE
Confidence 37899999999999999998853 2 2699999999999765443221 2357899999987 4455 6789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..+++|+ .++..++++++++|+|||.+++.+............+ ...|... .......+.+++..+++++
T Consensus 194 ~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-----~~~y~~~-~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 194 FSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-----GDRYAKM-RNVYFIPSVPALKNWLERA 265 (322)
T ss_pred EECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-----hhHHhcC-ccceeCCCHHHHHHHHHHc
Confidence 999999998 7888999999999999999998754322111000000 0001000 1112246899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||+.++...
T Consensus 266 GF~~i~~~~ 274 (322)
T PRK15068 266 GFKDVRIVD 274 (322)
T ss_pred CCceEEEEe
Confidence 999998754
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.79 E-value=7.8e-19 Score=130.20 Aligned_cols=95 Identities=26% Similarity=0.491 Sum_probs=82.5
Q ss_pred EEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~ 191 (352)
||+|||+|..+..+++. ++.+++|+|+|+.+++.++++... .++.+..+|+. .+++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~----~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAE----DLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTT----SSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHH----hCcccccccccccccccee
Confidence 89999999999999995 578999999999999999998754 34669999987 6688899999999999999
Q ss_pred ccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 192 AINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 192 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|+ +++..+++++.|+|||||++++
T Consensus 72 ~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 99 8999999999999999999986
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=1.5e-18 Score=151.21 Aligned_cols=158 Identities=18% Similarity=0.331 Sum_probs=114.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.+..++.+++|+|+|+.|++.|+++.... ..+++++++|+.+ +++ ..+|+|+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~d~v~ 127 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH----VEI--KNASMVI 127 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh----CCC--CCCCEEe
Confidence 6799999999999999998865436889999999999999999887643 3468999999974 333 3589999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh---------hhcCccccC-cee--ecCCCeeeeccC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR---------FKKGRCLQD-NFY--ARGDGTLVYFFT 253 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~~~~~-~~~--~~~~~~~~~~~~ 253 (352)
+.+++||+++++...++++++++|+|||.+++.+.......... +........ ... ...-.......+
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 99999999877889999999999999999999875432211100 000000000 000 000011234679
Q ss_pred HHHHHHHHHhCCCceEEe
Q psy11741 254 REEVKTMFESAGFVEKQN 271 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~ 271 (352)
.+++.++++++||..++.
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999999986553
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.78 E-value=4.7e-18 Score=143.28 Aligned_cols=137 Identities=21% Similarity=0.354 Sum_probs=105.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.++++....+ .++.+.+.|+.. .++ +++||+|++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~I~~ 101 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN----LTF-DGEYDFILS 101 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh----CCc-CCCcCEEEE
Confidence 67999999999999999998 67799999999999999998766533 458888888864 233 467999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe-CCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD-YGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..++|++++++...+++++.++|+|||.+++.. +...+. ....+ ..+.++.+++...++ |
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~el~~~~~--~ 162 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY----------------PCTVG-FPFAFKEGELRRYYE--G 162 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC----------------CCCCC-CCCccCHHHHHHHhC--C
Confidence 999999987889999999999999999966543 221110 00011 123478899999887 8
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 163 ~~~~~~~ 169 (197)
T PRK11207 163 WEMVKYN 169 (197)
T ss_pred CeEEEee
Confidence 9887653
No 24
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.77 E-value=1.6e-17 Score=141.02 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=119.1
Q ss_pred hhHHHHhhhccccccc--chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH
Q psy11741 67 KNWDAFYNVHQNRFFK--DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN 144 (352)
Q Consensus 67 ~yw~~~y~~~~~~f~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~ 144 (352)
++|++.|......|.. ....+...+..+.. .++.+|||+|||.|..+..||+ .|.+|+|+|+|+.
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~---------~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~ 67 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGL---------PAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEI 67 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCC---------CCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHH
Confidence 3789888776655532 22333333332211 1267999999999999999998 8899999999999
Q ss_pred HHHHHHhccc-------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCC
Q psy11741 145 AVNILKEHEE-------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211 (352)
Q Consensus 145 ~l~~a~~~~~-------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 211 (352)
+++.+.+... ....++++.++|+.+... ...++||.|+-..+++|++++.....++.+.++|||
T Consensus 68 Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 68 AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA---ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP 144 (213)
T ss_pred HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc---ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC
Confidence 9998643211 123568999999985321 113579999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 212 GGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 212 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
||++++..+...... . +...+.++.+++.+++.. +|.+...
T Consensus 145 gG~~ll~~~~~~~~~-----------------~-~gpp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 145 GARQLLITLDYDQSE-----------------M-AGPPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCeEEEEEEEcCCCC-----------------C-CCcCCCCCHHHHHHHhcC-CceEEEE
Confidence 998777655431100 0 111245889999998863 4555544
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.77 E-value=3.4e-18 Score=143.93 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.++++....+.++.+...|+.. .++ +++||+|++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA----AAL-NEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh----ccc-cCCCCEEEEe
Confidence 67999999999999999998 66799999999999999988776544457777778753 223 3579999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++++++.++...++++++++|+|||++++.+...... +..+ ....+.++++++.+++. +|+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~---------------~~~~-~~~~~~~~~~el~~~f~--~~~ 163 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD---------------YPCH-MPFSFTFKEDELRQYYA--DWE 163 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC---------------CCCC-CCcCccCCHHHHHHHhC--CCe
Confidence 99999987888999999999999999966654321100 0000 11123588999999986 588
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 164 ~~~~~ 168 (195)
T TIGR00477 164 LLKYN 168 (195)
T ss_pred EEEee
Confidence 77664
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4.9e-18 Score=146.76 Aligned_cols=152 Identities=21% Similarity=0.294 Sum_probs=119.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...+|.+|||||||.|.+++.+|+. -+.+|+|+++|+++.+.+++++...+ .++++...|..+. .+.|
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~---y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------~e~f 138 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEE---YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------EEPF 138 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHH---cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------cccc
Confidence 4567999999999999999999996 46799999999999999999876644 4788999988743 3459
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|-|++..+++|+..+.....++.+.++|+|||.+++..+..+..... .....+.. |..+++ ..++..++....
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~--~~~~~i~~--yiFPgG---~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR--RFPDFIDK--YIFPGG---ELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc--cchHHHHH--hCCCCC---cCCCHHHHHHHH
Confidence 99999999999988899999999999999999999988766542221 00000111 111222 246788999999
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
+++||.+.+..
T Consensus 212 ~~~~~~v~~~~ 222 (283)
T COG2230 212 SEAGFVVLDVE 222 (283)
T ss_pred HhcCcEEehHh
Confidence 99999988764
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.76 E-value=1.5e-17 Score=149.62 Aligned_cols=143 Identities=24% Similarity=0.301 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++.. ..++.+..+|+. .+++++++||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~--~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e----~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAE----DLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHH----hCCCCCCceeEEEE
Confidence 36799999999999999988876 55789999999999999998754 246788999987 45566789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++++ .+...++++++++|+|||.+++.....+.....+. ... ....+.+.+++.++++++||
T Consensus 185 ~~~L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~-----~~~--------~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 185 AGSIEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF-----FAD--------VWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred cChhhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH-----hhh--------hhccCCCHHHHHHHHHHCCC
Confidence 9999998 56678999999999999999886543221100000 000 01123578999999999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
+.++..
T Consensus 250 ~~V~i~ 255 (340)
T PLN02490 250 KDVKLK 255 (340)
T ss_pred eEEEEE
Confidence 998764
No 28
>PRK05785 hypothetical protein; Provisional
Probab=99.76 E-value=1.7e-17 Score=142.66 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=121.7
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
...+.|+..+..| |..- ...++..+..|....+..+.... .++.+|||+|||+|.++..+++.. +.+
T Consensus 10 ~v~~~f~~iA~~Y-D~~n--~~~s~g~~~~wr~~~~~~l~~~~-------~~~~~VLDlGcGtG~~~~~l~~~~---~~~ 76 (226)
T PRK05785 10 ELQEAYNKIPKAY-DRAN--RFISFNQDVRWRAELVKTILKYC-------GRPKKVLDVAAGKGELSYHFKKVF---KYY 76 (226)
T ss_pred HHHHHHHhhhHHH-HHhh--hhccCCCcHHHHHHHHHHHHHhc-------CCCCeEEEEcCCCCHHHHHHHHhc---CCE
Confidence 3557788888887 4321 11245566677666555554321 126799999999999999998853 458
Q ss_pred EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
|+|+|+|+.|++.|+++. .++++|+. .+|+++++||+|++.++++|+ .++..++++++++|||.+.
T Consensus 77 v~gvD~S~~Ml~~a~~~~-------~~~~~d~~----~lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~~~- 142 (226)
T PRK05785 77 VVALDYAENMLKMNLVAD-------DKVVGSFE----ALPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRKQVG- 142 (226)
T ss_pred EEEECCCHHHHHHHHhcc-------ceEEechh----hCCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcCceE-
Confidence 999999999999998752 35678876 567889999999999999998 7889999999999999432
Q ss_pred EEEeCCCCchhhHh---------hh--cCccccC--ceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 216 LFRDYGRYDLVQLR---------FK--KGRCLQD--NFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 216 ~~~~~~~~~~~~~~---------~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
++ +++.++....+ .. .+..+.. ..|.-...+...+.+.+++.++++++|
T Consensus 143 il-e~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 143 FI-AMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred EE-EeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 22 33332211111 00 0111111 111112223345788999999999974
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=7.6e-18 Score=136.36 Aligned_cols=109 Identities=25% Similarity=0.460 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++.... ++.+++|+|+|+.|++.|+++++..+ .++++.++|+.+.. .. ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-~~-~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-QE-LE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC-GC-SS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc-cc-cC-CCeeEEE
Confidence 378999999999999999995432 67899999999999999999876533 47999999998521 11 33 7999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++ .+...+++++.++|++||.+++.++.
T Consensus 79 ~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999 78889999999999999999998765
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=7.2e-18 Score=150.59 Aligned_cols=137 Identities=20% Similarity=0.301 Sum_probs=107.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.+++++...+.++.+...|+... .+ +++||+|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEc
Confidence 56999999999999999998 677999999999999999988776556788888888642 22 6789999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++++++++...+++++.++|+|||++++........ +. ........++..++.+++.. |+
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~---------------~~-~~~p~~~~~~~~el~~~~~~--~~ 253 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED---------------YP-CPMPFSFTFKEGELKDYYQD--WE 253 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc---------------CC-CCCCCCcccCHHHHHHHhCC--CE
Confidence 99999988889999999999999999977643221110 00 01122345889999999864 77
Q ss_pred eEEe
Q psy11741 268 EKQN 271 (352)
Q Consensus 268 ~~~~ 271 (352)
++..
T Consensus 254 i~~~ 257 (287)
T PRK12335 254 IVKY 257 (287)
T ss_pred EEEE
Confidence 7765
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.75 E-value=2.1e-17 Score=146.85 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=112.9
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.|+++....+ .++.+..+|+. .+++++++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~----~l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE----ALPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh----hCCCCCCceeEE
Confidence 3588999999999998887776543 45689999999999999998865432 57889999986 455667899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++++. .+...+++++.++|||||++++.++............... ...+......+.+++..+++++
T Consensus 151 i~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 151 ISNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAE-------LYAGCVAGALQEEEYLAMLAEA 221 (272)
T ss_pred EEcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHH-------HHhccccCCCCHHHHHHHHHHC
Confidence 999999887 6778899999999999999999765432110000000000 0001111236788999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||..+....
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999887643
No 32
>KOG4300|consensus
Probab=99.75 E-value=1.8e-17 Score=133.65 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceE-EEEecCCCCCCCCC-CCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCH-AFVCDVTSEDWNPP-FAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~-~~~~d~~~~~~~~~-~~~~~fD~V 184 (352)
...||++|||||..-...--. |+.+|+++|+++.|-+.|.+.+.. ...++. |+.++..+ ++ ++++++|.|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~---p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~----l~~l~d~s~DtV 149 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK---PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN----LPQLADGSYDTV 149 (252)
T ss_pred ccceEEecccCCCCcccccCC---CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc----CcccccCCeeeE
Confidence 456899999999886554322 788999999999999999888765 345666 88888874 44 568999999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++.. +++.+.|++++++|+|||++++.++...................+....+|.. ++. +..+.++++
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~---ltr-d~~e~Leda 223 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV---LTR-DTGELLEDA 223 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE---Eeh-hHHHHhhhc
Confidence 999999988 89999999999999999999999887654333222222222222223334433 333 355677888
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
.|..+..
T Consensus 224 ~f~~~~~ 230 (252)
T KOG4300|consen 224 EFSIDSC 230 (252)
T ss_pred ccccchh
Confidence 8887765
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.75 E-value=2.8e-17 Score=141.92 Aligned_cols=140 Identities=22% Similarity=0.421 Sum_probs=110.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+|||||||+|..+..+++.+ ++.+++|+|+|+.+++.|+++.... ..++.+...|+... ++ .++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH--PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehH
Confidence 79999999999999999876 6679999999999999999887542 35789999998642 33 3589999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...++++++++|+|||.+++.++....... . .......++.+..++.++++++||.
T Consensus 75 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~------~~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 75 EVIHHI--KDKMDLFSNISRHLKDGGHLVLADFIANLLSA--------I------EHEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHHhC--CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc--------c------cccccccccCCHHHHHHHHHHCCCe
Confidence 999999 67889999999999999999998764321000 0 0011122357899999999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
+++..
T Consensus 139 ~~~~~ 143 (224)
T smart00828 139 VVEGV 143 (224)
T ss_pred EEEeE
Confidence 98764
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.75 E-value=1.4e-17 Score=146.31 Aligned_cols=154 Identities=19% Similarity=0.296 Sum_probs=107.7
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||||||.|.++..+++. .|++|+|+.+|+...+.|++++...+ .++++...|..+. +.+|
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~---~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~f 128 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAER---YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKF 128 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHH---H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHH---cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCC
Confidence 4556999999999999999999996 37799999999999999999887644 5789999998742 3499
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcC--ccccCceeecCCCeeeeccCHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKG--RCLQDNFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
|.|++..+++|+..++...+++++.++|+|||.+++..+............. ..+.... .+.+ ..++.+++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FPgg---~lps~~~~~~ 203 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FPGG---YLPSLSEILR 203 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--STTS------BHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee--CCCC---CCCCHHHHHH
Confidence 9999999999998889999999999999999999998766544322211110 1111111 1222 2367888999
Q ss_pred HHHhCCCceEEee
Q psy11741 260 MFESAGFVEKQNL 272 (352)
Q Consensus 260 ll~~~Gf~~~~~~ 272 (352)
.++++||.+....
T Consensus 204 ~~~~~~l~v~~~~ 216 (273)
T PF02353_consen 204 AAEDAGLEVEDVE 216 (273)
T ss_dssp HHHHTT-EEEEEE
T ss_pred HHhcCCEEEEEEE
Confidence 9999999988764
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.75 E-value=2.5e-18 Score=129.12 Aligned_cols=99 Identities=22% Similarity=0.475 Sum_probs=82.5
Q ss_pred EEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh-
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF- 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~- 188 (352)
|||+|||+|..+..++..+.. +..+++|+|+|+.|++.++++....+.++++++.|+. .++..+++||+|++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~----~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADAR----DLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTT----CHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHh----HCcccCCCeeEEEEcCC
Confidence 799999999999999987621 2379999999999999999998766568999999997 4556678999999954
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGG 213 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG 213 (352)
+++|+++++...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999999999999999999999998
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.75 E-value=4.6e-17 Score=139.98 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++. .+.+++|+|+|+.|++.|+++..... .++.+.++|+.. + +++||+|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~----~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~---~~~fD~i 123 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK----RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS----L---CGEFDIV 123 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh----C---CCCcCEE
Confidence 378999999999999999987 55689999999999999998876433 378999999874 2 2789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++|++++++..+++++.+++++++++.+...+.. ...... .. ..+..........+++.+++.++++++
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAW-LAFLKM-IG----ELFPGSSRATSAYLHPMTDLERALGEL 197 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchH-HHHHHH-HH----hhCcCcccccceEEecHHHHHHHHHHc
Confidence 999999998777889999999999998776665322211 111100 01 111111122344668999999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||.++...
T Consensus 198 Gf~v~~~~ 205 (219)
T TIGR02021 198 GWKIVREG 205 (219)
T ss_pred Cceeeeee
Confidence 99998764
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.74 E-value=1.6e-17 Score=148.27 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++++|||+|||+|.++..++... ...|+|+|+|+.|+..++.... ....++.+..+++.+ ++. ..+||+|
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~----lp~-~~~FD~V 192 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ----LHE-LYAFDTV 192 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH----CCC-CCCcCEE
Confidence 47899999999999998888742 2379999999999986543211 123467788888763 333 3589999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..+++|+ .++..+|++++++|+|||.|++.+............+ ...+.. .......++..++..+++++
T Consensus 193 ~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p-----~~ry~k-~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 193 FSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP-----KDRYAK-MKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred EEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc-----hHHHHh-ccccccCCCHHHHHHHHHHC
Confidence 999999999 7888999999999999999999764321110000000 000000 01112346899999999999
Q ss_pred CCceEEeeee
Q psy11741 265 GFVEKQNLID 274 (352)
Q Consensus 265 Gf~~~~~~~~ 274 (352)
||+.++....
T Consensus 265 GF~~V~i~~~ 274 (314)
T TIGR00452 265 GFENFRILDV 274 (314)
T ss_pred CCeEEEEEec
Confidence 9999987543
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=6.8e-17 Score=142.55 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=108.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.|++.|+++. .++.+..+|+.. +. ++++||+|++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~----~~-~~~~fD~v~~ 99 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW--PAARITGIDSSPAMLAEARSRL----PDCQFVEADIAS----WQ-PPQALDLIFA 99 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhc----cC-CCCCccEEEE
Confidence 37899999999999999999876 6789999999999999998875 357889999863 22 3468999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh-h--hcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR-F--KKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+.+++|+ .+...+++++.++|+|||.+++............ . ......+...+.........+.+..++.+++.+
T Consensus 100 ~~~l~~~--~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (258)
T PRK01683 100 NASLQWL--PDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP 177 (258)
T ss_pred ccChhhC--CCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence 9999999 6778999999999999999999653321111000 0 000000011111111112245678899999999
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+|+.+...
T Consensus 178 ~g~~v~~~ 185 (258)
T PRK01683 178 AACRVDIW 185 (258)
T ss_pred CCCceeee
Confidence 99876443
No 39
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.73 E-value=1.4e-16 Score=131.15 Aligned_cols=138 Identities=19% Similarity=0.301 Sum_probs=102.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
++++||+|||.|+.+..||+ .|..|+++|.|+.+++.+++.+...+..++..+.|+.+. .+ ++.||+|++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~----~~-~~~yD~I~st 101 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF----DF-PEEYDFIVST 101 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB----S--TTTEEEEEEE
T ss_pred CCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc----cc-cCCcCEEEEE
Confidence 78999999999999999999 899999999999999999888776667799999998743 23 4689999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++++++++....+++.+.+.++|||++++........ +.. .....+.+.+.++...+. |++
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d---------------~p~-~~~~~f~~~~~EL~~~y~--dW~ 163 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD---------------YPC-PSPFPFLLKPGELREYYA--DWE 163 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS---------------S---SS--S--B-TTHHHHHTT--TSE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC---------------CCC-CCCCCcccCHHHHHHHhC--CCe
Confidence 99999999999999999999999999988865421100 011 112233467788888876 677
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 164 il~y~ 168 (192)
T PF03848_consen 164 ILKYN 168 (192)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
No 40
>PRK06202 hypothetical protein; Provisional
Probab=99.73 E-value=5.1e-17 Score=140.92 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=111.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..|++... .++.+++|+|+|+.|++.|+++... .++.+...+... ++..+++||+|+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~----l~~~~~~fD~V~ 134 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDE----LVAEGERFDVVT 134 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEeccc----ccccCCCccEEE
Confidence 67999999999999988876432 1456999999999999999887543 346666666542 333568999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc-ccCceeecCCC--eeeeccCHHHHHHHHH
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC-LQDNFYARGDG--TLVYFFTREEVKTMFE 262 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ll~ 262 (352)
++.++||+++++...+++++.++++ |.+++.+..........+..... .....+...++ ....+++.+++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 9999999976667899999999998 56666676665332222211111 11111222232 3345899999999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
+ ||++.....
T Consensus 213 ~-Gf~~~~~~~ 222 (232)
T PRK06202 213 Q-GWRVERQWP 222 (232)
T ss_pred C-CCeEEeccc
Confidence 9 999887654
No 41
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.73 E-value=1.3e-16 Score=135.96 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=118.3
Q ss_pred hhhHHHHhhhcccccc-cc-hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 66 AKNWDAFYNVHQNRFF-KD-RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 66 ~~yw~~~y~~~~~~f~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
.++|++.|......|. .. ...+...+..+. ..++.+|||+|||.|..+..||+ .|.+|+|+|+|+
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~---------~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~ 69 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALA---------LPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSE 69 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhC---------CCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCH
Confidence 4579988877665453 22 223333332221 11267999999999999999998 889999999999
Q ss_pred HHHHHHHhccc-------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 144 NAVNILKEHEE-------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 144 ~~l~~a~~~~~-------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
.+++.+.+... ....++++.++|+.+.. +...+.||+|+-..+++|++++.....++.+.++|+
T Consensus 70 ~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~---~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~ 146 (218)
T PRK13255 70 LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT---AADLADVDAVYDRAALIALPEEMRERYVQQLAALLP 146 (218)
T ss_pred HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC---cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence 99998743211 12356889999998532 112358999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
|||.+++........ ..+...+..+.+++.+++.. +|.+....
T Consensus 147 pgG~~~l~~~~~~~~------------------~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 147 AGCRGLLVTLDYPQE------------------ELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred CCCeEEEEEEEeCCc------------------cCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 999755533321100 00111235889999999853 36665543
No 42
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.73 E-value=9.5e-17 Score=138.74 Aligned_cols=161 Identities=18% Similarity=0.218 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.+++|||||||+|.++..++.+ ....|+|+|++.......+......+ ..+......+. .++. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE----~Lp~-~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVE----DLPN-LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchh----hccc-cCCcCEE
Confidence 3899999999999999999884 33379999999987666433222222 22222223333 4454 6789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..|++|. .++...|+++++.|+|||.|++.+..........+ .....|. .........+...+..+++++
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L-----~P~~rYa-~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL-----VPEDRYA-KMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE-----ccCCccc-CCCceEEeCCHHHHHHHHHHc
Confidence 999999999 88999999999999999999998764332221111 1111121 122233457999999999999
Q ss_pred CCceEEeeeeeeeeeecCC
Q psy11741 265 GFVEKQNLIDRRLQVNRGK 283 (352)
Q Consensus 265 Gf~~~~~~~~~~~~~~~~~ 283 (352)
||..+++.-...+......
T Consensus 259 gF~~v~~v~~~~Tt~~EQR 277 (315)
T PF08003_consen 259 GFKDVRCVDVSPTTIEEQR 277 (315)
T ss_pred CCceEEEecCccCCHHHhc
Confidence 9999998665555544333
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.73 E-value=5.2e-17 Score=132.02 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=139.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...+|.|+|||+|..+..|+++. |+..++|+|.|++|++.|+++. ++++|..+|+.. .. +....|++++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw--P~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~---w~--p~~~~dllfa 98 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW--PDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRT---WK--PEQPTDLLFA 98 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC--CCCeEeeccCCHHHHHHHHHhC----CCCceecccHhh---cC--CCCccchhhh
Confidence 47899999999999999999998 9999999999999999998774 678999999985 22 3578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh----cCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK----KGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+.+++++ ++-..+|.++...|.|||+|.+..+...+...-..- ....+... +....-......++..+.+++.
T Consensus 99 NAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~-l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 99 NAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE-LGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhc--cccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh-hCccccccCCCCCHHHHHHHhC
Confidence 9999999 788999999999999999999987654432222111 11111111 1111112334678899999998
Q ss_pred hCCCceEEeeeeeeeeeecCCccceeeeeEeeEEecccc--ccchHHHHHHHhhcCchhhhhhhhhhhhhccccccceee
Q psy11741 263 SAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHY--LFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYR 340 (352)
Q Consensus 263 ~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~el~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~r 340 (352)
..+-.+.--...+..+.. +......|+...-.. -| -.+.++-+..|.+- ...+........+-..-+.|+|
T Consensus 176 ~~~~rvDiW~T~Y~h~l~---~a~aIvdWvkgTgLr-P~L~~L~e~~~~~FL~~Y---~~~l~~aYP~~~dGr~ll~FpR 248 (257)
T COG4106 176 PLACRVDIWHTTYYHQLP---GADAIVDWVKGTGLR-PYLDRLDEEERQRFLDRY---LALLAEAYPPRADGRVLLAFPR 248 (257)
T ss_pred cccceeeeeeeeccccCC---Cccchhhheeccccc-eeccccCHHHHHHHHHHH---HHHHHHhCCCccCCcEEeecce
Confidence 877665443332222222 222333455543210 01 12222222222210 0011111222223345568999
Q ss_pred eeeehhc
Q psy11741 341 VWIQAKY 347 (352)
Q Consensus 341 ~~~~~~~ 347 (352)
+||.|+.
T Consensus 249 lFiVA~~ 255 (257)
T COG4106 249 LFIVATR 255 (257)
T ss_pred EEEEEec
Confidence 9998864
No 44
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.73 E-value=1.3e-16 Score=139.06 Aligned_cols=166 Identities=18% Similarity=0.312 Sum_probs=124.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.++++.. .++.++.+|+.. .++++++||+|++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF--PQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEK----LPLEDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC--CCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhh----CCCCCCceeEEEEh
Confidence 5789999999999999999876 66789999999999999988764 368899999874 44567899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...++.++.++|+|||.+++.++............. .....+.+.+++.+++.++ |.
T Consensus 106 ~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~-f~ 170 (240)
T TIGR02072 106 LALQWC--DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFG------------QHGLRYLSLDELKALLKNS-FE 170 (240)
T ss_pred hhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHH------------HhccCCCCHHHHHHHHHHh-cC
Confidence 999999 67889999999999999999998776544322211000 0122457889999999988 87
Q ss_pred eEEeeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchh
Q psy11741 268 EKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVE 319 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~ 319 (352)
........ +..++.+..++.+.+...|...
T Consensus 171 ~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 171 LLTLEEEL----------------------ITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred CcEEEEEE----------------------EEEeCCCHHHHHHHHHHhccCc
Confidence 66543211 1123446677777777777543
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.73 E-value=2.1e-16 Score=141.26 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++.... ..++.+...|+.. + +++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l---~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL----EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----L---SGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----c---CCC
Confidence 367999999999999999998 6679999999999999999986542 2457888888752 1 578
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-hcCccccCceeecCCCeeeeccCHHHHHH
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-KKGRCLQDNFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
||+|+|..+++|++.+....+++.+.+ +.+||.++. . .+........ ..+..+ .........++++.+++..
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs-~-~p~~~~~~~l~~~g~~~----~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS-F-APKTLYYDILKRIGELF----PGPSKATRAYLHAEADVER 285 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE-e-CCcchHHHHHHHHHhhc----CCCCcCceeeeCCHHHHHH
Confidence 999999999999866666677887775 456666443 2 2221111000 111111 0011112334568999999
Q ss_pred HHHhCCCceEEee
Q psy11741 260 MFESAGFVEKQNL 272 (352)
Q Consensus 260 ll~~~Gf~~~~~~ 272 (352)
+++++||++....
T Consensus 286 lL~~AGf~v~~~~ 298 (315)
T PLN02585 286 ALKKAGWKVARRE 298 (315)
T ss_pred HHHHCCCEEEEEE
Confidence 9999999987654
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.72 E-value=1.9e-16 Score=138.06 Aligned_cols=159 Identities=23% Similarity=0.409 Sum_probs=114.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++..+. +..+++|+|+++.+++.++++... ...++.+..+|+.+ .+++.++||+|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA----LPFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc----CCCCCCCccEEE
Confidence 68999999999999999988762 257999999999999999998754 23568899999874 334567899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-----------cCccccCc--eeecCCCeeeecc
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-----------KGRCLQDN--FYARGDGTLVYFF 252 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~ 252 (352)
+..+++++ .+...+++.+.++|+|||.+++.+...+........ .+...... .+.........++
T Consensus 127 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 127 IAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 99999988 678899999999999999998877654332111000 00000000 0000001112356
Q ss_pred CHHHHHHHHHhCCCceEEeee
Q psy11741 253 TREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+.+++..+++++||+++....
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred CHHHHHHHHHhCCCceeeeee
Confidence 889999999999999887643
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.72 E-value=1.7e-16 Score=137.00 Aligned_cols=157 Identities=25% Similarity=0.310 Sum_probs=112.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-ceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-RCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ .+..++|+|+|+.+++.++++....+. ++.+...|+.+.. ....++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR----LGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEE
Confidence 377999999999999998887 445799999999999999988765444 5888888876421 11147899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++++ .++..+++.+.++|+|||.+++...+.............................+++..++.++++++|
T Consensus 118 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 118 CMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred ehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999 6788999999999999999998876543211111000000000111111222234678999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|++++..
T Consensus 196 ~~i~~~~ 202 (224)
T TIGR01983 196 LRVKDVK 202 (224)
T ss_pred Ceeeeee
Confidence 9998764
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.72 E-value=2.3e-16 Score=136.85 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=124.0
Q ss_pred HHHHHhhHHhhhhHHHHhhhccccccc-----chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFK-----DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
.+...|+..+...|+.+|......... ...-....+...++.. ...++.+|||+|||+|.++..+++
T Consensus 12 ~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~vLDvGcG~G~~~~~l~~--- 83 (230)
T PRK07580 12 EVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPAD-----GDLTGLRILDAGCGVGSLSIPLAR--- 83 (230)
T ss_pred hhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCHHHHHHHH---
Confidence 345667777777799888753321110 0001111111122210 122367999999999999999987
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHh
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKY 208 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~ 208 (352)
.+..|+|+|+|+.|++.|+++....+ .++.+..+|+.. .+++||+|++..+++|++.++...+++.+.+.
T Consensus 84 -~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~ 155 (230)
T PRK07580 84 -RGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASL 155 (230)
T ss_pred -cCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhh
Confidence 45579999999999999998876533 378889888431 25789999999999998777888999999987
Q ss_pred cCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 209 LKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 209 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+++++++.+.... ......... ...+. .........+++..++.++++++||.+....
T Consensus 156 ~~~~~~i~~~~~~-~~~~~~~~l-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 156 TRGSLIFTFAPYT-PLLALLHWI-GGLFP----GPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred cCCeEEEEECCcc-HHHHHHHHh-ccccC----CccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 7655444332111 111111111 11100 0112223346789999999999999988764
No 49
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.72 E-value=1.9e-16 Score=136.61 Aligned_cols=158 Identities=26% Similarity=0.483 Sum_probs=113.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|..+..+++... ...+++|+|+++.+++.++++.. ...++.+..+|+.+ .+++.++||+|++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~-~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~----~~~~~~~~D~i~~ 112 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP-DRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEA----LPFEDNSFDAVTI 112 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC-CCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhc----CCCCCCcEEEEEE
Confidence 378999999999999999998762 22689999999999999998865 34568899999874 3345678999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh----h-----h--cCccccCc--eeecCCCeeeeccC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR----F-----K--KGRCLQDN--FYARGDGTLVYFFT 253 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~-----~--~~~~~~~~--~~~~~~~~~~~~~~ 253 (352)
..+++++ .+...+++.+.++|+|||.+++.+...+...... . . .+...... .+....+....+++
T Consensus 113 ~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (223)
T TIGR01934 113 AFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPS 190 (223)
T ss_pred eeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCC
Confidence 9999988 6788999999999999999998776433211000 0 0 00000000 00000011123568
Q ss_pred HHHHHHHHHhCCCceEEee
Q psy11741 254 REEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+++..+++++||..+...
T Consensus 191 ~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 191 QEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHHHcCCccceee
Confidence 8999999999999987764
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.71 E-value=3e-16 Score=140.93 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=103.6
Q ss_pred hhHHhhhhHHHHhhhccc-ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEE
Q psy11741 61 LNEDVAKNWDAFYNVHQN-RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC 139 (352)
Q Consensus 61 ~~~~~~~yw~~~y~~~~~-~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gv 139 (352)
|+....+.|++.+..... ........+......++... .++.+|||+|||+|..+..|++.+. .+.+|+|+
T Consensus 23 yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~-------~~~~~iLELGcGtG~~t~~Ll~~l~-~~~~~~~i 94 (301)
T TIGR03438 23 YDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT-------GAGCELVELGSGSSRKTRLLLDALR-QPARYVPI 94 (301)
T ss_pred ccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh-------CCCCeEEecCCCcchhHHHHHHhhc-cCCeEEEE
Confidence 555555666655432110 11122234444444444332 1267899999999999999999762 26799999
Q ss_pred eCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCC--CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 140 DFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPP--FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 140 D~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
|+|+.|++.|+++.... ..++.++++|+.+.. .++ ...+...++++..+++++++++...+|++++++|+|||.|
T Consensus 95 DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 95 DISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 99999999998886542 245778899997531 111 1111334555556788898889999999999999999999
Q ss_pred EEEeCCCC
Q psy11741 216 LFRDYGRY 223 (352)
Q Consensus 216 ~~~~~~~~ 223 (352)
++......
T Consensus 174 lig~d~~~ 181 (301)
T TIGR03438 174 LIGVDLVK 181 (301)
T ss_pred EEeccCCC
Confidence 98654443
No 51
>PRK08317 hypothetical protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=137.84 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=112.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..++..+. +..+++|+|+|+.+++.++++......++.+...|+.. .++++++||+|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG----LPFPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc----CCCCCCCceEEEE
Confidence 378999999999999999988763 46799999999999999998744445678999999873 3455789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+ .++..+++++.++|+|||.+++.++........ ....... ...................+..+++++||
T Consensus 94 ~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 94 DRVLQHL--EDPARALAEIARVLRPGGRVVVLDTDWDTLVWH-SGDRALM-RKILNFWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred echhhcc--CCHHHHHHHHHHHhcCCcEEEEEecCCCceeec-CCChHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHcCC
Confidence 9999999 678899999999999999999877532110000 0000000 00000000001112456789999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
..+....
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9887644
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.70 E-value=6.7e-18 Score=126.35 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=66.1
Q ss_pred EEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
||+|||+|.++..+++.+ +..+++|+|+|+.|++.|+++..... .+......+..+.. .....++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF--DYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh--hcccccccceehhhhhH
Confidence 799999999999999987 78999999999999999988877643 34444444443211 11123699999999999
Q ss_pred hccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 191 DAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
||+ +++..++++++++|+|||+|
T Consensus 77 ~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh--hhHHHHHHHHHHHcCCCCCC
Confidence 999 89999999999999999986
No 53
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.69 E-value=3.3e-16 Score=132.34 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=86.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..++... ++.+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++++||+|++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~--~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL--PFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-----PFKDNFFDLVLTK 112 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC--CCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-----CCCCCCEEEEEEC
Confidence 6789999999999999998865 5779999999999999998864 346788888763 4568899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++|++++++..+++++.+++ ++.+++.++.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9999998888999999999997 5677777654
No 54
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.68 E-value=3.1e-16 Score=137.84 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=100.2
Q ss_pred hhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCcccc----HHHHHhhcC---CCCeEEEEEeCCHHHH
Q psy11741 74 NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS----VFPIVEHCK---NDNVFVYGCDFSENAV 146 (352)
Q Consensus 74 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~----~~~l~~~~~---~~~~~v~gvD~s~~~l 146 (352)
..+.+.|+.+...+......++|..... ....++.+|||+|||+|.. +..+++... ..+.+|+|+|+|+.|+
T Consensus 67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~-~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 67 TTNETRFFRESKHFEALEEKVLPLLIAS-RRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred hcCCCcccCCcHHHHHHHHHHhHHHHHh-cCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 4455677776554433333333321100 0122357999999999974 444555432 1257999999999999
Q ss_pred HHHHhcccc----------------------------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHH
Q psy11741 147 NILKEHEEY----------------------------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM 198 (352)
Q Consensus 147 ~~a~~~~~~----------------------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 198 (352)
+.|++..-. ...++.|.++|+.+ .+.+.++||+|+|.++++|+++++.
T Consensus 146 ~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~----~~~~~~~fD~I~crnvl~yf~~~~~ 221 (264)
T smart00138 146 EKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA----ESPPLGDFDLIFCRNVLIYFDEPTQ 221 (264)
T ss_pred HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC----CCCccCCCCEEEechhHHhCCHHHH
Confidence 999986410 11368999999984 3335789999999999999988888
Q ss_pred HHHHHHHHHhcCCCEEEEEEe
Q psy11741 199 QHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 199 ~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..++++++++|+|||+|++..
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEEC
Confidence 999999999999999999963
No 55
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=1.3e-15 Score=126.33 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..++... ++.+|+|+|+|+.|++.|+++.+..+ .++++.++|+.+ .+. .++||+|++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~--~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~----~~~-~~~fDlV~~ 118 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR--PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE----FGQ-EEKFDVVTS 118 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh----CCC-CCCccEEEE
Confidence 7899999999999999998765 77899999999999999999877644 459999999874 333 578999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
.. + .++..+++.++++|+|||.+++.... ....++..+.+..|+
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~~------------------------------~~~~~l~~~~~~~~~ 162 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALKGR------------------------------DPEEEIAELPKALGG 162 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEeCC------------------------------ChHHHHHHHHHhcCc
Confidence 64 2 45678999999999999999987432 234557777777888
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.+....
T Consensus 163 ~~~~~~ 168 (187)
T PRK00107 163 KVEEVI 168 (187)
T ss_pred eEeeeE
Confidence 876653
No 56
>PRK06922 hypothetical protein; Provisional
Probab=99.68 E-value=5.4e-16 Score=147.65 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|..+..+++.+ ++.+++|+|+|+.|++.|+++....+.++.++++|+.+. ...+++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~--P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET--EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence 37899999999999998888876 788999999999999999987655456788889998742 11256789999999
Q ss_pred hhhhhcc-----------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAI-----------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.++|++ +.++...++++++++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9988865 2357889999999999999999998743
No 57
>KOG1271|consensus
Probab=99.68 E-value=6.5e-16 Score=122.17 Aligned_cols=130 Identities=27% Similarity=0.443 Sum_probs=102.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||.|.++..|++.. -...++|+|+|+.+++.|+..++..+ ..|+|.+.|+.++ .+..++||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg--f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG--FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhc--CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEee
Confidence 399999999999999999854 22248999999999999988776543 3499999999964 344688999998
Q ss_pred hhhhhccC--hh----HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 187 IFVLDAIN--PN----KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 187 ~~~l~~~~--~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
..++..++ ++ .+...+..+.++|+|||+++|...+ ++.+++.+.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------------------~T~dELv~~ 192 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------------------FTKDELVEE 192 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC------------------------------ccHHHHHHH
Confidence 77665552 22 2345678889999999999998665 789999999
Q ss_pred HHhCCCceEEeeee
Q psy11741 261 FESAGFVEKQNLID 274 (352)
Q Consensus 261 l~~~Gf~~~~~~~~ 274 (352)
++..||........
T Consensus 193 f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 193 FENFNFEYLSTVPT 206 (227)
T ss_pred HhcCCeEEEEeecc
Confidence 99999987765443
No 58
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.67 E-value=9.3e-16 Score=138.55 Aligned_cols=152 Identities=18% Similarity=0.293 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||||||+|.++..+++.+ |+.+++++|. +.+++.+++++...+ .+++++.+|+.+. +++ .+|+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v 219 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF--PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAV 219 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC--CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEE
Confidence 46799999999999999999987 7889999998 789999988876533 5799999998742 222 36999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH--hhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL--RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
++..++|+++++....++++++++|+|||++++.++...+.... ........... .......+.+.+++.++++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~ll~ 295 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAG----MPFSVLGFKEQARYKEILE 295 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcc----cccccccCCCHHHHHHHHH
Confidence 99999998877777899999999999999999987633211110 00000000000 0001112345799999999
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
++||+.+..
T Consensus 296 ~aGf~~v~~ 304 (306)
T TIGR02716 296 SLGYKDVTM 304 (306)
T ss_pred HcCCCeeEe
Confidence 999998764
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1.9e-15 Score=144.78 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=111.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++... ...++.++++|+... .+++++++||+|++.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~--~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSP--DLNISDGSVDLIFSN 110 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccc--ccCCCCCCEEEEehh
Confidence 679999999999999999984 4589999999999998865432 235789999998643 345667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+++++...+++++.++|||||++++.+....... .... ......+.....+..++.++||.
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~f~~~~~~ 176 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSG------------DSKR--KNNPTHYREPRFYTKVFKECHTR 176 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------------cccc--cCCCCeecChHHHHHHHHHheec
Confidence 999999777789999999999999999999765321100 0000 11122335678999999999998
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
......
T Consensus 177 ~~~~~~ 182 (475)
T PLN02336 177 DEDGNS 182 (475)
T ss_pred cCCCCE
Confidence 876543
No 60
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.65 E-value=4.1e-15 Score=125.34 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=104.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. .+..++|+|+|+.+++.++++ ++.++++|+.+.. .++++++||+|+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l--~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE---KQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGL--EAFPDKSFDYVILS 82 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc---cCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcc--cccCCCCcCEEEEh
Confidence 679999999999999888764 445789999999999998753 3678888886421 12557899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-hHh-hhcCccccCc--eeecCCCeeeeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-QLR-FKKGRCLQDN--FYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
.+++|+ .++..+++++.+.+++ +++..++..... ... ...+...... .+...+..+..+++.+++.+++++
T Consensus 83 ~~l~~~--~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQAT--RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcC--cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 999999 6788899988887654 344333321111 001 1111110000 011122334568899999999999
Q ss_pred CCCceEEeeeeee
Q psy11741 264 AGFVEKQNLIDRR 276 (352)
Q Consensus 264 ~Gf~~~~~~~~~~ 276 (352)
+||+++.......
T Consensus 158 ~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 158 LNLRILDRAAFDV 170 (194)
T ss_pred CCCEEEEEEEecc
Confidence 9999998765433
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=4e-15 Score=137.39 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|+++... .++++...|+.. + +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~---~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~----l---~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH---YGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRD----L---NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhh----c---CCCCCEEE
Confidence 45789999999999999999875 456999999999999999988742 357788888753 2 46899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|++..++..+++++.++|||||.+++.+++...... .....+. .+..+. ....+.+++...++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~---~~~~~i~--~yifp~---g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT---NVDPWIN--KYIFPN---GCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC---CCCCCce--eeecCC---CcCCCHHHHHHHHH-CC
Confidence 999999997778889999999999999999998765432110 0001111 111111 13457788887766 58
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|.+.+.
T Consensus 305 ~~v~d~ 310 (383)
T PRK11705 305 FVMEDW 310 (383)
T ss_pred cEEEEE
Confidence 887665
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.65 E-value=5e-15 Score=123.19 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. +.+++|+|+|+.|++.++++....+.++.+..+|+.+. ..++||+|+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK----GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence 678999999999999999884 33899999999999999998776556788888987642 14589999998
Q ss_pred hhhhccChh-------------------HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 FVLDAINPN-------------------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
..+++.+.. ....+++++.++|+|||.+++.....
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~-------------------------- 143 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL-------------------------- 143 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------------------
Confidence 766555211 14678999999999999999875331
Q ss_pred eeccCHHHHHHHHHhCCCceEEee
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+..++...+++.||......
T Consensus 144 ---~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 144 ---NGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred ---CChHHHHHHHHhCCCeEEEEE
Confidence 236678899999999887663
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.65 E-value=2.1e-15 Score=122.59 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-.++||+|||.|.++..|+.++ -+++++|+|+.+++.|+++.... ++|.+.+.|+.+. .++++||+|+++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC----d~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~-----~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC----DRLLAVDISPRALARARERLAGL-PHVEWIQADVPEF-----WPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE----EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh----CceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCC-----CCCCCeeEEEEe
Confidence 5689999999999999999965 48999999999999999998754 6899999999752 357899999999
Q ss_pred hhhhccCh-hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 188 FVLDAINP-NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 188 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+++++++ +++..++..+...|+|||.|++...
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999964 6899999999999999999999765
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=3.9e-15 Score=123.35 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..++... ++.+|+|+|+|+.|++.++++.+..+ .+++++++|+.+. + ..++||+|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~--~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR--PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEe
Confidence 7899999999999999988754 66789999999999999988876543 4699999998742 2 2578999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.. ++ ++..+++.+.++|+|||.+++.
T Consensus 116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RA-LA-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh-hh-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 75 33 3456788889999999999986
No 65
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.63 E-value=1e-14 Score=123.60 Aligned_cols=142 Identities=16% Similarity=0.163 Sum_probs=108.3
Q ss_pred hhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC
Q psy11741 65 VAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s 142 (352)
..++|++.|..+...|... ...+...+..+.. .++.+||..|||.|..+..|+. .|.+|+|+|+|
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~---------~~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS 74 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNI---------NDSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELS 74 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCC---------CCCCeEEEeCCCChHHHHHHHh----CCCcEEEEecC
Confidence 3458998888877777443 2233344443322 1367999999999999999999 88999999999
Q ss_pred HHHHHHHHhcc-------------ccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 143 ENAVNILKEHE-------------EYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 143 ~~~l~~a~~~~-------------~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
+.+++.+.+.. ...+.++++.++|+.+... .+-..+.||+|+-..++++++++...+..+.+.++|
T Consensus 75 ~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~-~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL 153 (226)
T PRK13256 75 EKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK-IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC 153 (226)
T ss_pred HHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc-cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh
Confidence 99999985521 1124579999999985321 011236899999999999999999999999999999
Q ss_pred CCCEEEEEEeC
Q psy11741 210 KPGGMVLFRDY 220 (352)
Q Consensus 210 kpgG~l~~~~~ 220 (352)
+|||.+++..+
T Consensus 154 ~pgg~llll~~ 164 (226)
T PRK13256 154 SNNTQILLLVM 164 (226)
T ss_pred CCCcEEEEEEE
Confidence 99999888754
No 66
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.63 E-value=1.1e-14 Score=118.34 Aligned_cols=147 Identities=18% Similarity=0.328 Sum_probs=111.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||.|.+...|.+. .+...+|+|+++..+..|.++- +.++++|+.+.. ..+++++||.|+++
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~rG------v~Viq~Dld~gL--~~f~d~sFD~VIls 82 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVARG------VSVIQGDLDEGL--ADFPDQSFDYVILS 82 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHHcC------CCEEECCHHHhH--hhCCCCCccEEehH
Confidence 889999999999999888875 7789999999999999887763 678999998632 13779999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-hHhhh-cCc-----cccCceeecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-QLRFK-KGR-----CLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
.+++++ .++..+|+++.|+ |...+++.++..... ...+. .|. .+...|| +.+..++.|..+++++
T Consensus 83 qtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY---dTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 83 QTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY---DTPNIHLCTIKDFEDL 154 (193)
T ss_pred hHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc---CCCCcccccHHHHHHH
Confidence 999999 8889999998776 556666655442211 11121 222 2233333 3445568999999999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
+++.|+.+.+...
T Consensus 155 c~~~~i~I~~~~~ 167 (193)
T PF07021_consen 155 CRELGIRIEERVF 167 (193)
T ss_pred HHHCCCEEEEEEE
Confidence 9999999987644
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=1.4e-15 Score=128.70 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecC-CCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDV-TSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~-~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.. ++.+++|+|+|+.|++.|+++....+ .++.++++|+ ... ...+++++||+|+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~--p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~D~V~ 116 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN--PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL--LDMFPDGSLDRIY 116 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC--CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH--HHHcCccccceEE
Confidence 7799999999999999998876 67799999999999999998876533 5799999998 421 1114578899999
Q ss_pred ehhhhhccC------hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAIN------PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+.+...+.. ......+++++.++|+|||.+++...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 876543221 11257789999999999999999754
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=1.3e-14 Score=121.52 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|+++....+ .++++..+|+.. ++ .++||+|+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~~D~v~ 102 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF--PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGKADAIF 102 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcCCCEEE
Confidence 37899999999999999999875 67899999999999999998875432 468888888642 12 35799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+....++ +..+++.+.++|+|||++++..... .+..++..++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8765433 4567899999999999998864321 23567888999999
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|..++.
T Consensus 149 ~~~~~~ 154 (187)
T PRK08287 149 VSELDC 154 (187)
T ss_pred CCcceE
Confidence 987665
No 69
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=2.2e-14 Score=122.76 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++.|++.+.+++... .++.++.+|+.......++ .++||+|+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v--~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIV--EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 347899999999999999999976 3458999999999999877665433 5789999998742111222 35699998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+... .+.....+++++.++|||||.+++...... . .. ..... . . .++..++++++|
T Consensus 147 ~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~--------d~-----~~~~~-~-~-~~~~~~~l~~aG 202 (226)
T PRK04266 147 QDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARS----I--------DV-----TKDPK-E-I-FKEEIRKLEEGG 202 (226)
T ss_pred ECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEeccc----c--------cC-----cCCHH-H-H-HHHHHHHHHHcC
Confidence 5321 223345678999999999999999533210 0 00 00000 0 1 134559999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|+.+...
T Consensus 203 F~~i~~~ 209 (226)
T PRK04266 203 FEILEVV 209 (226)
T ss_pred CeEEEEE
Confidence 9998764
No 70
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.61 E-value=1.3e-14 Score=123.24 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=118.0
Q ss_pred hhhhHHHHhhhcccccccch--hhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC
Q psy11741 65 VAKNWDAFYNVHQNRFFKDR--HWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s 142 (352)
..++|++.|..+...|.... ..+...+..+. ..++.+||..|||.|..+..|++ .|.+|+|+|+|
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~---------~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls 68 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEPNPALVEYLDSLA---------LKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLS 68 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTSTHHHHHHHHHHT---------TSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-
T ss_pred CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcC---------CCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecC
Confidence 35789999988887776542 33444444321 22367999999999999999999 88999999999
Q ss_pred HHHHHHHHh-ccc------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 143 ENAVNILKE-HEE------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 143 ~~~l~~a~~-~~~------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
+.+++.+.+ +.. ....+|++.++|+.+.. +...++||+|+=..+++.++++...+..+.+.++|
T Consensus 69 ~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~---~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll 145 (218)
T PF05724_consen 69 PTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP---PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL 145 (218)
T ss_dssp HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG---GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC---hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 999999832 211 01246889999998521 11235899999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 210 KPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 210 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+|||.+++.+...+. . ...| ..+..+.+++.+++. .+|++.....
T Consensus 146 ~p~g~~lLi~l~~~~--------~---------~~~G-PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 146 KPGGRGLLITLEYPQ--------G---------EMEG-PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEEEEEES-C--------S---------CSSS-SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCCCcEEEEEEEcCC--------c---------CCCC-cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 999995444322110 0 0111 112368899999998 8998887755
No 71
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.61 E-value=2.8e-14 Score=130.38 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=98.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.|++.|+++....+.++.++++|+.+.. .+ ..++||+|+|+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~--p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER--PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--cc-cCCCccEEEEC
Confidence 5699999999999999998765 7789999999999999999998766668999999986431 11 24579999994
Q ss_pred hhhh-----cc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecC
Q psy11741 188 FVLD-----AI------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARG 244 (352)
Q Consensus 188 ~~l~-----~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
--.. .. ..+....+++.+.++|+|||.+++.. +.
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc----------------------
Confidence 3110 00 01235577888889999999988742 21
Q ss_pred CCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 245 DGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 245 ~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
...+.+.+++++.||..+....
T Consensus 384 -------~Q~e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 384 -------DQGAAVRGVLAENGFSGVETLP 405 (423)
T ss_pred -------cHHHHHHHHHHHCCCcEEEEEE
Confidence 2366788999999998776643
No 72
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.59 E-value=1.6e-14 Score=119.61 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+..+.||+|+|.|+.+..++... --+|-.+|+.+..++.|++.... ...-..+.+..+.+. ....++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~---f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV---FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh---cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cCCCCcEeEEE
Confidence 36789999999999998876632 23899999999999999976654 223356777777642 22357999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+-+++.|++++++..+|+++...|+|+|++++-+..... + ...+...+.+. ..+.+.+..+|++||
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~--------~----~~~~D~~DsSv--TRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS--------G----FDEFDEEDSSV--TRSDEHFRELFKQAG 193 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS--------S----EEEEETTTTEE--EEEHHHHHHHHHHCT
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC--------C----CcccCCccCee--ecCHHHHHHHHHHcC
Confidence 999999999999999999999999999999997643211 0 11233334333 357889999999999
Q ss_pred CceEEeeeeeeee
Q psy11741 266 FVEKQNLIDRRLQ 278 (352)
Q Consensus 266 f~~~~~~~~~~~~ 278 (352)
+.++.......++
T Consensus 194 l~~v~~~~Q~~fP 206 (218)
T PF05891_consen 194 LRLVKEEKQKGFP 206 (218)
T ss_dssp -EEEEEEE-TT--
T ss_pred CEEEEeccccCCC
Confidence 9999887654333
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=2.7e-14 Score=111.21 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.++++....+ .++.++..|+... ++...++||.|++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~ 94 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV--PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFI 94 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC--CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEE
Confidence 6799999999999999999876 56799999999999999998866532 4688888887531 2222468999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.... .....+++.+.+.|+|||.+++..+
T Consensus 95 ~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 95 GGSG-----GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCcc-----hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 6543 3446899999999999999998643
No 74
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.56 E-value=1.3e-14 Score=118.11 Aligned_cols=129 Identities=21% Similarity=0.310 Sum_probs=93.3
Q ss_pred EEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 137 YGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 137 ~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
+|+|+|+.|++.|+++.... ..+++++++|+. .+|+++++||+|++.++++++ .++..++++++++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~----~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI----DLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechh----hCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcC
Confidence 48999999999998765421 246999999997 567778899999999999999 78899999999999999
Q ss_pred EEEEEEeCCCCchhhHhhh-----cCccc-cCce------eecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 213 GMVLFRDYGRYDLVQLRFK-----KGRCL-QDNF------YARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 213 G~l~~~~~~~~~~~~~~~~-----~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
|.+++.++..+........ ..... .... |.....+...+.+.+++.++++++||+.+..
T Consensus 75 G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 75 SRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred eEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 9999998876543211100 00000 0000 0000111134689999999999999998865
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.56 E-value=1.3e-13 Score=122.91 Aligned_cols=104 Identities=23% Similarity=0.358 Sum_probs=82.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+. ++.++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~--~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-----~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF--PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-----LAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----CcCCCccEEEE
Confidence 689999999999999999876 67899999999999999999977543 3489999998642 22348999998
Q ss_pred h-------------hhhhccC----------hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 I-------------FVLDAIN----------PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~-------------~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+ .+..|-+ ......++..+.++|+|||++++..
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 4 1112111 1256788999999999999998853
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.55 E-value=7.7e-14 Score=117.88 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++.... ++.+|+++|+++.+++.|+++....+ .++.++.+|+.+. ++...++||.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTINEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcCCCCCEE
Confidence 478999999999999999887643 45689999999999999998876543 5788888888642 22224689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... ..++..+++.+.++|+|||.+++..... -+..++...+++.
T Consensus 116 ~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l~~~ 161 (198)
T PRK00377 116 FIGGG-----SEKLKEIISASWEIIKKGGRIVIDAILL-----------------------------ETVNNALSALENI 161 (198)
T ss_pred EECCC-----cccHHHHHHHHHHHcCCCcEEEEEeecH-----------------------------HHHHHHHHHHHHc
Confidence 98532 2466789999999999999998853321 2356788888999
Q ss_pred CCce
Q psy11741 265 GFVE 268 (352)
Q Consensus 265 Gf~~ 268 (352)
||..
T Consensus 162 g~~~ 165 (198)
T PRK00377 162 GFNL 165 (198)
T ss_pred CCCe
Confidence 9844
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.55 E-value=4e-14 Score=124.10 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCccccHHHH-HhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPI-VEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|+|||||.|.++..+ ++... ++.+++|+|+++.+++.|++.+.. ...+++|.++|+.+. ....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcC
Confidence 4789999999988554443 32222 778999999999999999998843 236799999999752 11246899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++. ++++++.++...+++++++.|+|||.+++..
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 8888877899999999999999999999975
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=1.1e-13 Score=113.97 Aligned_cols=105 Identities=20% Similarity=0.360 Sum_probs=84.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+.. +.++..|..+. .++++||+|++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~--~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 104 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG--PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-----LPDGKFDLIVS 104 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS--TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-----CCTTCEEEEEE
T ss_pred CCeEEEecCChHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-----ccccceeEEEE
Confidence 7899999999999999999976 7778999999999999999998875533 89999998752 23689999999
Q ss_pred hhhhhccC---hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAIN---PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+--++.-. ..-...+++.+.++|+|||.+++..
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 76544331 1346789999999999999997753
No 79
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.54 E-value=2.6e-13 Score=120.68 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|++++...+ .++.++++|+.+. +++++||+|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~--~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-----~~~~~fD~Iv 194 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF--PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-----LPGRKYDLIV 194 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-----cCCCCccEEE
Confidence 5789999999999999999876 67899999999999999999987543 4689999998642 2356899999
Q ss_pred ehh------hhhccC-----------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 186 LIF------VLDAIN-----------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 186 ~~~------~l~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
++- .+.++. .+....+++.+.++|+|||++++...
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g---------------------- 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG---------------------- 252 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------------
Confidence 851 111110 12346788999999999999998532
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
.+.+.+.+++.+.||.-..
T Consensus 253 ---------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 253 ---------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred ---------cCHHHHHHHHHhCCCceee
Confidence 1235677888888876543
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=5.8e-14 Score=124.61 Aligned_cols=101 Identities=25% Similarity=0.444 Sum_probs=81.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||+|||+|.++..+++.+... +..++|+|+|+.|++.|+++. +++.+.++|+. .+|+++++||+|++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~----~lp~~~~sfD~I~~ 157 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH----RLPFADQSLDAIIR 157 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc----cCCCcCCceeEEEE
Confidence 5789999999999999998865311 347999999999999998764 45889999987 56677889999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
.+.- ..++++.++|||||++++..++....
T Consensus 158 ~~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 158 IYAP---------CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred ecCC---------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 6431 23578999999999999987766543
No 81
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=117.80 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=100.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-.++||+|||||..+..|... ..+++|+|+|+.|+++|.++-.. -++.+.|+.... ....+.+||+|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~----a~~ltGvDiS~nMl~kA~eKg~Y----D~L~~Aea~~Fl--~~~~~er~DLi~Aa 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM----ADRLTGVDISENMLAKAHEKGLY----DTLYVAEAVLFL--EDLTQERFDLIVAA 195 (287)
T ss_pred cceeeecccCcCcccHhHHHH----HhhccCCchhHHHHHHHHhccch----HHHHHHHHHHHh--hhccCCcccchhhh
Confidence 568999999999998888763 34799999999999999887432 133444443211 11236789999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.|+.++ .++..++..+..+|+|||.|.++.-...+... +..+ ++..+-.+..-++..++..||.
T Consensus 196 DVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l~-ps~RyAH~~~YVr~~l~~~Gl~ 259 (287)
T COG4976 196 DVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVLG-PSQRYAHSESYVRALLAASGLE 259 (287)
T ss_pred hHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCC-------------eecc-hhhhhccchHHHHHHHHhcCce
Confidence 999999 88999999999999999999997543221110 1100 1111224566789999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 260 ~i~~~ 264 (287)
T COG4976 260 VIAIE 264 (287)
T ss_pred EEEee
Confidence 99874
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=3.8e-13 Score=119.86 Aligned_cols=128 Identities=20% Similarity=0.355 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-cCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++... +..+++|+|+|+.+++.|+++.. ....++.++.+|+... ..+++||+|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~--~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER--PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-----LPGGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----CCCCceeEEE
Confidence 46799999999999999999876 67899999999999999999876 3346799999998642 2257899999
Q ss_pred ehhh------hhcc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCcee
Q psy11741 186 LIFV------LDAI------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241 (352)
Q Consensus 186 ~~~~------l~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
++-- ++.+ ..+....+++++.++|+|||++++.. +.
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~------------------- 240 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY------------------- 240 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-------------------
Confidence 8421 1101 01345678899999999999999852 11
Q ss_pred ecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
...+.+..++++.||..+..
T Consensus 241 ----------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ----------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----------hHHHHHHHHHHhCCCceeEE
Confidence 23456888999999986655
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=3.6e-14 Score=119.37 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=85.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||||||+|.++..++... +..+++|+|+++.|++.|+++.... ..++.++++|+.+.. ...++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~--p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN--PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC--CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence 5689999999999999999876 7889999999999999998876553 258999999987421 11134568999998
Q ss_pred hhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+...+.... ....++++++++|||||.|++.+..
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 7644332110 1257899999999999999987533
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.52 E-value=2.2e-13 Score=119.69 Aligned_cols=129 Identities=21% Similarity=0.373 Sum_probs=98.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|+++....+ .++.+..+|+.+. +++++||+|++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER--PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-----LPGGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-----CcCCceeEEEE
Confidence 5689999999999999999876 67799999999999999998876533 3689999998642 34678999998
Q ss_pred hhh------hhccCh------------------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 187 IFV------LDAINP------------------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 187 ~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
+-. .+.+.. .....+++.+.++|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------- 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------- 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------
Confidence 422 111111 1235788999999999999998521
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+...+++.++++++||..+....
T Consensus 219 --------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 --------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred --------ccHHHHHHHHHHhCCCCceEEEe
Confidence 13356789999999998877644
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=5.6e-13 Score=107.60 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+++|||||||..+..++... +..+++++|-++++++..++|+... .+|+..+.+|+-+. ++- ..++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~--p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~---L~~-~~~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAG--PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA---LPD-LPSPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---hcC-CCCCCEE
Confidence 348899999999999999999544 8889999999999999999998763 48899999998753 221 1279999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+.... .....+|+.+...|||||++++..... -+.....+.+++.
T Consensus 107 FIGGg------~~i~~ile~~~~~l~~ggrlV~naitl-----------------------------E~~~~a~~~~~~~ 151 (187)
T COG2242 107 FIGGG------GNIEEILEAAWERLKPGGRLVANAITL-----------------------------ETLAKALEALEQL 151 (187)
T ss_pred EECCC------CCHHHHHHHHHHHcCcCCeEEEEeecH-----------------------------HHHHHHHHHHHHc
Confidence 98765 355788999999999999999975432 2345567788999
Q ss_pred CC-ceEEeee
Q psy11741 265 GF-VEKQNLI 273 (352)
Q Consensus 265 Gf-~~~~~~~ 273 (352)
|+ +++++..
T Consensus 152 g~~ei~~v~i 161 (187)
T COG2242 152 GGREIVQVQI 161 (187)
T ss_pred CCceEEEEEe
Confidence 99 5555543
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.52 E-value=2.4e-13 Score=129.93 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=96.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++.+|+.+. .+.++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~--p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-----~~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL--PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-----IEKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-----CcCCCccEEE
Confidence 4689999999999999998876 77899999999999999999976543 4688999997641 2356899999
Q ss_pred ehh--------------hhhc-----c-----ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCcee
Q psy11741 186 LIF--------------VLDA-----I-----NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241 (352)
Q Consensus 186 ~~~--------------~l~~-----~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
++- +..| + ..+....+++.+.++|+|||.+++. .+.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~------------------- 271 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF------------------- 271 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC-------------------
Confidence 832 1111 0 0123556788899999999999885 321
Q ss_pred ecCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
-..+.+.+++.+.||..+....
T Consensus 272 ----------~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 272 ----------KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred ----------chHHHHHHHHHhcCCCceEEEe
Confidence 2456788888899998776543
No 87
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=3.8e-13 Score=112.79 Aligned_cols=126 Identities=22% Similarity=0.350 Sum_probs=95.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-c--eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-R--CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++. .+.+++|+|+|+.+++.++++....+. + +.++.+|+.+. +.+++||+|
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~d~v 94 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK----NGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-----FRGDKFDVI 94 (188)
T ss_pred CCEEEEEccccCHHHHHHHh----hcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-----ccccCceEE
Confidence 67999999999999999988 467999999999999999888765332 2 78888887642 234589999
Q ss_pred Eehhhhhcc-------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCC
Q psy11741 185 LLIFVLDAI-------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGD 245 (352)
Q Consensus 185 ~~~~~l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
+++..+... +...+..+++++.++|+|||.+++....
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------ 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------
Confidence 986433221 1234567899999999999998886422
Q ss_pred CeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 246 GTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 246 ~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....+++..+++++||.+...
T Consensus 151 -----~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 151 -----LTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred -----cCCHHHHHHHHHHCCCeeeee
Confidence 134567889999999987754
No 88
>PTZ00146 fibrillarin; Provisional
Probab=99.51 E-value=3.8e-13 Score=117.47 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..++.... +...|+++|+|+.|++.....+.. ..|+.++..|+.... ......++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG-~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVG-PEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCEEE
Confidence 4578999999999999999999875 345899999999765444333221 257899999987431 1222245899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+... .+++...++.++.++|||||.|++.
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 8663 2356667778899999999999994
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=1.7e-13 Score=116.24 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|..+..+++... ++.+|+++|+++.+++.|++++...+ .++++..+|+.+. ++ ..++||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~---~~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG---LE-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC---Cc-cCCCccEE
Confidence 478999999999999998888763 34589999999999999998876543 3589999998742 22 24689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++..++++++ .++.+.|+|||+|++..
T Consensus 147 i~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 9988877662 35778999999998853
No 90
>KOG1541|consensus
Probab=99.49 E-value=2.8e-13 Score=110.69 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+.-|||||||+|..+..+.. +|..++|+|+|+.|++.|.+..-. -.+..+|+-+ .+|+.+++||.||+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~---GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERELE----GDLILCDMGE---GLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhhhh----cCeeeeecCC---CCCCCCCccceEEE
Confidence 367899999999999888877 889999999999999999873211 3577888874 78899999999999
Q ss_pred hhhhhcc---------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAI---------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
...++++ +...+..++..++.+|++|+..++..+.
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7766555 1234556788899999999999997543
No 91
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.48 E-value=2.5e-13 Score=122.29 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--------C---CCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--------K---PDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~---~~~v~~~~~d~~~~~~~~~ 175 (352)
++.+|||+|||-|..+.-+... .-..++|+|+|...|+.|+++... . .-...++.+|.........
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 5889999999999988877774 445899999999999999998721 0 1245677787764322112
Q ss_pred CCC--CcceEEEehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 176 FAP--ESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 176 ~~~--~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+.+ ..||+|-|-+++|+. +.+....+|+.+.+.|+|||+|+.+.+..
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 233 599999999999988 67778889999999999999999987654
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=4.4e-13 Score=117.36 Aligned_cols=119 Identities=22% Similarity=0.354 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.|+++....+..... .+. ..+.+||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~---g~~~v~giDis~~~l~~A~~n~~~~~~~~~~---~~~-------~~~~~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKL---GAKKVLAVDIDPQAVEAARENAELNGVELNV---YLP-------QGDLKADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCceE---EEc-------cCCCCcCEEEE
Confidence 4789999999999988877663 2236999999999999999987654321011 111 11227999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+... +....++.++.++|||||++++..+.. ...+++...+++.||
T Consensus 186 ni~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 186 NILA-----NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGF 231 (250)
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCC
Confidence 6432 345678899999999999999975432 235678889999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.++...
T Consensus 232 ~~~~~~ 237 (250)
T PRK00517 232 TLDEVL 237 (250)
T ss_pred EEEEEE
Confidence 988653
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.48 E-value=3.1e-13 Score=122.77 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||+|||+|.++..+++.. ++.+|+++|+|+.|++.|++++...+....+...|+... ..++||+|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~--p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS--PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------cCCCccEEEEC
Confidence 4689999999999999999876 677999999999999999998876555566777776531 25789999998
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+|.. +......+++.+.++|+|||.|++..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 877753 23567899999999999999998864
No 94
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=3.4e-13 Score=123.24 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.+|||+|||+|.++..+++.. |..+|+++|+|+.|++.|+++++... .++++...|+... .++++||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~--P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-----~~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN--PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-----VEPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-----CCCCCEEE
Confidence 4699999999999999999876 78899999999999999999875432 3678888887542 23468999
Q ss_pred EEehhhhhc---cChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDA---INPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|+-.+|. ++......+++.+.++|+|||.|++..
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999765543 233455789999999999999999973
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=1.2e-12 Score=112.74 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=93.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. ...+++|+|+|+.+++.+++++...+.++.+..+|+... +++++||+|+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~---~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~n 108 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA---GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-----VEFRPFDVVVSN 108 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----ccCCCeeEEEEC
Confidence 679999999999999988873 224899999999999999998766555688888887641 246789999996
Q ss_pred hhhhccC-------------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 FVLDAIN-------------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
--....+ ...+..+++++.++|||||.+++.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~-------------------------- 162 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL-------------------------- 162 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------------------
Confidence 3211110 1125678889999999999999853221
Q ss_pred eeccCHHHHHHHHHhCCCceEEe
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.+..++...+++.||.....
T Consensus 163 ---~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 163 ---SGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred ---cCHHHHHHHHHHCCCCeEEE
Confidence 13456777888888875443
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.47 E-value=5.8e-13 Score=118.89 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.|+++....+ ..+.+...+.. +..+++||+|
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~---g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlV 229 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL---GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVI 229 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEE
Confidence 4789999999999999887763 33489999999999999999876543 23455555422 1235789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+++... .....++.++.++|||||+++++.+.
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 997543 34567899999999999999997543
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=4e-13 Score=114.50 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... ++.+|+++|+++.+++.|++++...+ .++.++.+|+... ....+.||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCCcCEE
Confidence 3488999999999999988888654 45699999999999999999876543 5799999998642 2235789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++.....++ ...+.+.|||||++++.
T Consensus 150 ~~~~~~~~~--------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 150 YVTAAGPDI--------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EECCCcccc--------hHHHHHhhCCCcEEEEE
Confidence 997765544 23567789999999885
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.45 E-value=5.5e-13 Score=121.47 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|.++..++. .+.+++|+|+++.|++.|+++++..+ .++.+.++|+.+ ++..+++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~----~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~----l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGL----MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK----LPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHH----hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc----CCcccCCCCEE
Confidence 4578999999999999887766 66799999999999999999876533 347888999874 45557899999
Q ss_pred Eehhhhh-------ccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLD-------AINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.--.. +...+....+++.+.++|+|||++++...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 9952211 11113367899999999999999988643
No 99
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.44 E-value=6.8e-13 Score=113.59 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... +..+|+++|+++.+++.|++++...+ .++.++.+|+... . ....+||+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~---~-~~~~~fD~I 150 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG---W-EPLAPYDRI 150 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC---C-cccCCCCEE
Confidence 3478999999999999999988753 34579999999999999999877643 5799999998642 1 124689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.....++ ...+.+.|+|||++++..
T Consensus 151 i~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 151 YVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 987665444 345778899999999853
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1e-12 Score=114.83 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||||.+++..++. ....++|+|++|.+++.|+.|+..++.. +.....+... . ...++||+|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~-~~~~~~DvI 233 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----V-PENGPFDVI 233 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----h-cccCcccEE
Confidence 5889999999999999988884 3346999999999999999998765433 2222222211 1 123699999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+++-. . +-+..+...+.++|||||+++++-+-. -..+.+.+.++++
T Consensus 234 VANIL-A----~vl~~La~~~~~~lkpgg~lIlSGIl~-----------------------------~q~~~V~~a~~~~ 279 (300)
T COG2264 234 VANIL-A----EVLVELAPDIKRLLKPGGRLILSGILE-----------------------------DQAESVAEAYEQA 279 (300)
T ss_pred Eehhh-H----HHHHHHHHHHHHHcCCCceEEEEeehH-----------------------------hHHHHHHHHHHhC
Confidence 99652 2 345678899999999999999984321 1256788889999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.++....
T Consensus 280 gf~v~~~~~ 288 (300)
T COG2264 280 GFEVVEVLE 288 (300)
T ss_pred CCeEeEEEe
Confidence 999988744
No 101
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=112.31 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||+|||+|.++..++... ++.+|+|+|+|+.|++.|+++. +++.++++|+.+. . .+++||+|+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~--~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC--KPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEEc
Confidence 5689999999999988887754 4579999999999999999874 3588999998742 1 24689999997
Q ss_pred hhhhccChhH------------------HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 188 FVLDAINPNK------------------MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 188 ~~l~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
-.+++.+..+ +...+.....+|+|+|.+++.-.+.+ .| .
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------------~y-------~ 190 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------------YY-------D 190 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------------cc-------c
Confidence 7776654332 24566777788899997766521111 01 1
Q ss_pred eccCHHHHHHHHHhCCCceEE
Q psy11741 250 YFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
..+++++++.+++++||....
T Consensus 191 ~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 191 GTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred ccCCHHHHHHHHHhcCcEecC
Confidence 127899999999999998654
No 102
>KOG1975|consensus
Probab=99.42 E-value=5.7e-12 Score=108.82 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=109.4
Q ss_pred CCCHHHHHHhhHHhhhhHHHHhhhccccccc-chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 52 QIDKNLIQTLNEDVAKNWDAFYNVHQNRFFK-DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 52 ~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
..+..+..||+.....=-.+. .....-+.. -.+|+...+-.....+ +..++|+|||-|..++-+-++
T Consensus 71 ~~~~~Va~HYN~~~e~g~e~R-q~S~Ii~lRnfNNwIKs~LI~~y~~~---------~~~~~~LgCGKGGDLlKw~kA-- 138 (389)
T KOG1975|consen 71 SKSSEVAEHYNERTEVGREKR-QRSPIIFLRNFNNWIKSVLINLYTKR---------GDDVLDLGCGKGGDLLKWDKA-- 138 (389)
T ss_pred chhHHHHHHHHHHHHHhHhhh-ccCceeehhhhhHHHHHHHHHHHhcc---------ccccceeccCCcccHhHhhhh--
Confidence 445667788877654332211 011111222 2467766655444332 778999999999998887764
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCC-------CceEEEEecCCCCCC--CCCCCCCcceEEEehhhhhcc--ChhHHH
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKP-------DRCHAFVCDVTSEDW--NPPFAPESLDIVLLIFVLDAI--NPNKMQ 199 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~--~~~~~~~~fD~V~~~~~l~~~--~~~~~~ 199 (352)
.-..++|+|+++..++.|+++..... -.+.|+.+|...... .+++++.+||+|-|-+++|+. +.+...
T Consensus 139 -gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 139 -GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred -cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 33479999999999999999876421 236788999876432 223345669999999999876 667888
Q ss_pred HHHHHHHHhcCCCEEEEEEeCC
Q psy11741 200 HVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 200 ~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+|+++++.|+|||+++-+.++
T Consensus 218 ~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHHHHHHhhcCCCcEEEEecCc
Confidence 9999999999999999987544
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.9e-12 Score=115.05 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+ .+ ++++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~--p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l--~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF--PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---AL--PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hC--CCCCccEEEE
Confidence 689999999999999999876 77899999999999999999987543 469999999864 22 3468999998
Q ss_pred hh------hh-------hccC----------hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IF------VL-------DAIN----------PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~------~l-------~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+- .+ .|-+ .+....+++.+.++|+|||.+++.
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 51 11 1110 123568899999999999999985
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.42 E-value=9.4e-13 Score=119.74 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+..+||||||+|.++..+|... |...++|+|+++.+++.|.+++... ..|+.++++|+.... ..++++++|.|++
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~--P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll--~~~~~~s~D~I~l 198 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN--PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL--ELLPSNSVEKIFV 198 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--hhCCCCceeEEEE
Confidence 5689999999999999999987 7889999999999999998887654 368999999986431 2356889999998
Q ss_pred hhhhhccChh----HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPN----KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+...+.... ....+++.++++|+|||.+.+.+-.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 6543332111 1257899999999999999997543
No 105
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.42 E-value=1.6e-12 Score=110.36 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC----CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW----NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++... +...|+|+|+++ |. . .+++.++++|+..... ..++.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~-~~~~V~aVDi~~-~~-----~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIG-DKGRVIACDILP-MD-----P----IVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-CCceEEEEeccc-cc-----C----CCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 377999999999999999998764 456899999998 21 1 1458999999985310 0023467899
Q ss_pred EEEehhhhhccChh--H-------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPN--K-------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++..+.++.... + ...+|+.+.++|+|||.|++..+.
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99997765544211 1 256899999999999999997554
No 106
>KOG3010|consensus
Probab=99.41 E-value=9.8e-13 Score=109.33 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=75.1
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++|+|||+|..++.++..+. +|+|+|+|+.||+.|++.....-.+ .+....++. .+--.+++.|+|++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v----~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMV----DLLGGEESVDLITAA 107 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh----hheeecCCHHHHHHhhcCCCcccccCCccccccccc----cccCCCcceeeehhh
Confidence 789999999988888888653 7999999999999999875431111 111111111 222227899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCE-EEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGG-MVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 221 (352)
.++|++ ++.++.+.+.++||+.| .+.+-.++
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999998 77899999999998755 77776555
No 107
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.41 E-value=2.4e-12 Score=109.63 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=102.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|||+|||+|..++.++++. +..+++|||+.+.|.+.|+++.+. ...++.+++.|+..... .....+||+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~--~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~--~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT--EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK--ALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC--CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh--cccccccCEEE
Confidence 7899999999999999999976 458999999999999999999876 34789999999986432 23345799999
Q ss_pred ehhhh----------------hccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 186 LIFVL----------------DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 186 ~~~~l----------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
|+=-. +|...-+...+++.+.++|||||.+.+....
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------------------- 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------------------- 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------------------
Confidence 93211 1112235778899999999999999986321
Q ss_pred eccCHHHHHHHHHhCCCceEEeee
Q psy11741 250 YFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
-...++..++.+.+|.......
T Consensus 173 --erl~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 173 --ERLAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred --HHHHHHHHHHHhcCCCceEEEE
Confidence 2355678888888888877654
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.41 E-value=2e-12 Score=114.30 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||||.+++..++. ...+|+|+|+++.+++.|++|+..++....+...... . ...++||+|++
T Consensus 161 ~g~~vLDvG~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~----~--~~~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE----D--LVEGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS----C--TCCS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec----c--cccccCCEEEE
Confidence 4789999999999999888884 2337999999999999999998865533333332111 1 22589999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+-.. +-+..++..+.++|+|||+|+++-+-. -..+++.+.+++ ||
T Consensus 232 NI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~-----------------------------~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 232 NILA-----DVLLELAPDIASLLKPGGYLILSGILE-----------------------------EQEDEVIEAYKQ-GF 276 (295)
T ss_dssp ES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHT-TE
T ss_pred CCCH-----HHHHHHHHHHHHhhCCCCEEEEccccH-----------------------------HHHHHHHHHHHC-CC
Confidence 6443 445678888999999999999974321 235677888876 99
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.+++..
T Consensus 277 ~~~~~~ 282 (295)
T PF06325_consen 277 ELVEER 282 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987764
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.39 E-value=6.2e-12 Score=109.81 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=93.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|++++...+ ++++++|+.+. ++ ...++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~--~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~---l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL--DGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA---LPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh---cchhcCCCEeEEEE
Confidence 4589999999999999998865 67799999999999999999986543 57888998642 11 11357999998
Q ss_pred hhh------hhccCh------------------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 187 IFV------LDAINP------------------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 187 ~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
+-- +..+++ +-+..+++.+.++|+|||++++....
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--------------------- 218 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--------------------- 218 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------
Confidence 521 111111 12457888888999999999986321
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-...++..++++.||...-.
T Consensus 219 ---------~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 219 ---------RQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred ---------chHHHHHHHHHHCCCCceee
Confidence 22456788888899876554
No 110
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.39 E-value=3.5e-12 Score=105.31 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=107.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc-eEEEEecCCCCCCCCC----CCCCcceE
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR-CHAFVCDVTSEDWNPP----FAPESLDI 183 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~-v~~~~~d~~~~~~~~~----~~~~~fD~ 183 (352)
+|||||||||..+.++++.+ |.....-.|+++..+...+......+ .| ..-+..|+....+... ...++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l--P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL--PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC--CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 69999999999999999999 88899999999988655544333211 22 2355778887644433 23578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++.+++|-++......+++.+.++|+|||.|++.-+-..+-.. ......--+......+ ...-..+.+++..+..+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~--ts~SN~~FD~sLr~rd-p~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF--TSESNAAFDASLRSRD-PEWGIRDIEDVEALAAA 182 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe--CCcHHHHHHHHHhcCC-CCcCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999986432111000 0000000000011111 12335788999999999
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+|+...+.
T Consensus 183 ~GL~l~~~ 190 (204)
T PF06080_consen 183 HGLELEED 190 (204)
T ss_pred CCCccCcc
Confidence 99997654
No 111
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=2.9e-12 Score=108.13 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++... ++.+|+++|+|+.+++.+++++...+ .+++++.+|+.+. ++.....+|.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~--~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~---~~~~~~~~d~v~ 114 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC--PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC---LAQLAPAPDRVC 114 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH---HhhCCCCCCEEE
Confidence 47899999999999999998754 66799999999999999999876533 5688999988541 111123456665
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
... ......+++++.++|+|||.+++....
T Consensus 115 ~~~------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEG------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEC------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 421 145678999999999999999997543
No 112
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.7e-12 Score=110.62 Aligned_cols=124 Identities=21% Similarity=0.359 Sum_probs=93.8
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|||+|||||.++..++... +.++|+|+|+|+.+++.|++|+...+ .++.+++.|.... . .++||+|+++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~--~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-----~-~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG--PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-----L-RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhC--cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-----c-CCceeEEEeCC
Confidence 79999999999999999987 77899999999999999999988765 5566777776542 2 34899999931
Q ss_pred --hh---hccC------------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCC
Q psy11741 189 --VL---DAIN------------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGD 245 (352)
Q Consensus 189 --~l---~~~~------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
.- .+.. .+-...++..+.+.|+|||.+++..-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------- 239 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------- 239 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-------------------------
Confidence 10 0110 13456788889999999999998532
Q ss_pred CeeeeccCHHHHHHHHHhCC-CceEEe
Q psy11741 246 GTLVYFFTREEVKTMFESAG-FVEKQN 271 (352)
Q Consensus 246 ~~~~~~~~~~~~~~ll~~~G-f~~~~~ 271 (352)
+-+.+.+.+++.+.| |..+..
T Consensus 240 -----~~q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 240 -----LTQGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred -----CCcHHHHHHHHHhcCCceEEEE
Confidence 134677899999999 554444
No 113
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1.1e-12 Score=101.10 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=82.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++.. ..+++|+|+++..++.|+.++...+ .++.+.++|+.+.. ..+++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEE
Confidence 3589999999999999998853 4799999999999999999987643 57999999987531 124578999999
Q ss_pred ehhhhhcc------ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAI------NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++--.... .......+++.+.++|+|||.+++..
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 96544322 11245688999999999999998864
No 114
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.35 E-value=3.6e-12 Score=106.28 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCccccHHHH----Hhhc---CCCCeEEEEEeCCHHHHHHHHhcc-------------------cc-----
Q psy11741 107 STKNILEIGCGVGNSVFPI----VEHC---KNDNVFVYGCDFSENAVNILKEHE-------------------EY----- 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l----~~~~---~~~~~~v~gvD~s~~~l~~a~~~~-------------------~~----- 155 (352)
+..+|+..||++|.-.-.| .+.. .....+++|+|+|+.+++.|++-. ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999744333 2311 112579999999999999998642 00
Q ss_pred -----CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 156 -----KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 156 -----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....|.|.+.|+.+ .+.+.+.||+|+|.+|+-+++++...++++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01468899999985 122367899999999999999999999999999999999999996
No 115
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.33 E-value=9.2e-12 Score=108.67 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||+|+|.++..+++++ |+.+++.+|. |..++.+++ ..+++++.+|+.+ ++| . +|++++.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~---~~P--~--~D~~~l~ 165 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY--PNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD---PLP--V--ADVYLLR 165 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS--TTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT---CCS--S--ESEEEEE
T ss_pred ccEEEeccCcchHHHHHHHHHC--CCCcceeecc-Hhhhhcccc-----ccccccccccHHh---hhc--c--ccceeee
Confidence 5689999999999999999988 9999999999 788888887 4789999999973 333 3 9999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCC--EEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPG--GMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 221 (352)
.++|++++++...+|+++++.|+|| |+|+|.+..
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999999999999999999 999998754
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.32 E-value=1.1e-11 Score=105.90 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+ .++.+..+|..+. .+ ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG---WP-AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC---CC-cCCCcCEE
Confidence 347899999999999998777742 379999999999999999876543 4689999997542 22 24789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++...++++ .+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 998765544 3456789999999998643
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=1.3e-11 Score=103.54 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC----CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW----NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++... +..+++|+|+|+.+ . ..++.+.++|+.+... ....+.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 478999999999999998888653 44589999999864 1 1457888889864210 0013456899
Q ss_pred EEEehhhh--------hcc-ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVL--------DAI-NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l--------~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++.... .|. ..+....++..+.++|+|||.+++..+
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99985432 111 112457899999999999999999643
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.31 E-value=6.8e-12 Score=110.20 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=83.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++.. ++.+++++|+++.+++.|++.+... .++++++.+|+.+. +....++||+|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~---l~~~~~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL--PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY---IAVHRHSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH---HHhCCCCCCEEE
Confidence 6789999999999999998876 7889999999999999999987542 36899999998642 112246899999
Q ss_pred ehhhhh-ccCh-hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLD-AINP-NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+...-. ..+. -....+++.+.++|+|||++++..+
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 853211 1111 1236899999999999999999644
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.31 E-value=2e-11 Score=91.19 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=82.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-cCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|+|+|||.|..+..++. . ...+++++|+++.++..+++... ....++.+...|+.+... ...++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEEcc
Confidence 489999999999988887 2 66799999999999999984322 233678899999875321 2357899999999
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98873 378899999999999999999875
No 120
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.30 E-value=7.3e-11 Score=101.40 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=116.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc-eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR-CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~-v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.+.+||||+||.|+..+............+...|+|+..++.+++.++..+ .+ ++|.++|+.+.. .+.-.+...+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-HhhccCCCCCEE
Confidence 477999999999999988888774323689999999999999999887643 34 499999998753 222224567999
Q ss_pred EehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+++..++.+++.+ ....++.+.+++.|||+++.+. .++.+++.+...... . +..+........+..++.++++.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg--QPwHPQle~IAr~Lt-s--Hr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG--QPWHPQLEMIARVLT-S--HRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC--CCCCcchHHHHHHHh-c--ccCCCceEEEecCHHHHHHHHHH
Confidence 9999999886655 5568999999999999999864 222333322221110 0 11122344556899999999999
Q ss_pred CCCceEEeee
Q psy11741 264 AGFVEKQNLI 273 (352)
Q Consensus 264 ~Gf~~~~~~~ 273 (352)
+||.-+....
T Consensus 289 aGF~K~~q~I 298 (311)
T PF12147_consen 289 AGFEKIDQRI 298 (311)
T ss_pred cCCchhhhee
Confidence 9999777655
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=2.3e-11 Score=114.64 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=86.8
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.+++++...+.++.+.++|+.... ..+..++||.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~--~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~ 316 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELA--PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDR 316 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCE
Confidence 34458899999999999999999876 4468999999999999999998776666789999987421 1123568999
Q ss_pred EEehh------hhh------c-cChh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIF------VLD------A-INPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~------~l~------~-~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++.- ++. + .++. .+..+|..+.++|||||.+++.+...
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99522 111 1 1111 24578999999999999999987643
No 122
>KOG2899|consensus
Probab=99.30 E-value=2.9e-11 Score=100.41 Aligned_cols=149 Identities=14% Similarity=0.274 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC------C---------------------
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP------D--------------------- 158 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~--------------------- 158 (352)
..+..+|||||.+|.++..+++.+ ....|+|+||++..++.|+++.+... .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F--~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDF--GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhh--ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 347889999999999999999998 45569999999999999999865311 0
Q ss_pred ---------ceEEEEecCCCCCC-CCCCCCCcceEEEehhhhh--cc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 159 ---------RCHAFVCDVTSEDW-NPPFAPESLDIVLLIFVLD--AI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 159 ---------~v~~~~~d~~~~~~-~~~~~~~~fD~V~~~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
++.|...+..-... -+.+....||+|+|..+-. |+ .++-+..+++++.++|.|||+|++ ++.+..
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQpWk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQPWK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCchH
Confidence 11111111100000 0112356899999977643 33 357789999999999999999999 454443
Q ss_pred hhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
...-.......+..++ ...++.++....++.+.
T Consensus 214 sY~kaar~~e~~~~ny-------~~i~lkp~~f~~~l~q~ 246 (288)
T KOG2899|consen 214 SYKKAARRSEKLAANY-------FKIFLKPEDFEDWLNQI 246 (288)
T ss_pred HHHHHHHHHHHhhcCc-------cceecCHHHHHhhhhhh
Confidence 3222211111111111 11346788888887665
No 123
>PRK00811 spermidine synthase; Provisional
Probab=99.28 E-value=1.6e-11 Score=109.11 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+||+||||+|..+..+++.. ...+|+++|+++.+++.|++.+.. ..++++++.+|+... +....++|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCCcc
Confidence 6799999999999999988752 345899999999999999987642 246899999998752 22236789
Q ss_pred eEEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++...-....... ...+++.+++.|+|||++++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999865332221111 2577899999999999998853
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3.1e-11 Score=114.33 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..+++... .+.+|+|+|+|+.+++.+++++...+ .++.+.++|+... + ++++||.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ-NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCCE
Confidence 44578999999999999998888654 34589999999999999999987644 4689999998742 2 3568999
Q ss_pred EEeh----h--hhh-------ccChh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLI----F--VLD-------AINPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~----~--~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++. . ++. +.+++ .+..+|..+.++|||||+++..+.+.
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9962 1 111 11222 24578999999999999999988764
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=3.3e-11 Score=113.78 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
...++.+|||+|||+|..+..+++... ...+|+++|+++.+++.+++++...+ .++.++.+|+.......+...++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMG-DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 345588999999999999999998753 34589999999999999999987654 4689999998753211113357899
Q ss_pred EEEeh------hhhhccC-------hh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 183 IVLLI------FVLDAIN-------PN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 183 ~V~~~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.|++. .++.+-+ +. .+..+|.++.++|||||+|+..+...
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99973 2232211 11 25788999999999999999877653
No 126
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=3.3e-11 Score=111.54 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++...+ .+++++++|+.+....+....++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~---ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 789999999999998776652 34489999999999999999987644 368999999875211111124689999
Q ss_pred EehhhhhccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINP-------NKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.--...-+. .....++..+.++|+|||.|+....+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98521100011 24556677788999999999986543
No 127
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.27 E-value=1.1e-10 Score=102.80 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=95.1
Q ss_pred hhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHH----HHhhcCC--CCeEEEEEeCCHHHH
Q psy11741 73 YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP----IVEHCKN--DNVFVYGCDFSENAV 146 (352)
Q Consensus 73 y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~----l~~~~~~--~~~~v~gvD~s~~~l 146 (352)
...+.+.|+.+...+......+.+. .+..+|+..||+||.-.-. +.+..+. ...+|+|+|+|+.++
T Consensus 89 ltineT~FFRd~~~f~~L~~~~~~~--------~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL 160 (287)
T PRK10611 89 LTTNLTAFFREAHHFPILAEHARRR--------SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL 160 (287)
T ss_pred hhCCCCCccCCcHHHHHHHHHHHhc--------CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH
Confidence 3455567887765443322222111 1247999999999974333 3332211 247899999999999
Q ss_pred HHHHhcc------------------cc--------------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccC
Q psy11741 147 NILKEHE------------------EY--------------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN 194 (352)
Q Consensus 147 ~~a~~~~------------------~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~ 194 (352)
+.|++-. .. ....|.|.+.|+.+.. .+ +.+.||+|+|.+++.|++
T Consensus 161 ~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--~~-~~~~fD~I~cRNvliyF~ 237 (287)
T PRK10611 161 EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ--WA-VPGPFDAIFCRNVMIYFD 237 (287)
T ss_pred HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC--Cc-cCCCcceeeHhhHHhcCC
Confidence 9998752 00 1145788888887531 11 257899999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 195 PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 195 ~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++...++++.+++.|+|||+|++.
T Consensus 238 ~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 238 KTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 899999999999999999999885
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.9e-11 Score=100.25 Aligned_cols=127 Identities=22% Similarity=0.258 Sum_probs=101.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+..++.+|||.|.|+|.++..|+.... +..+|+.+|+.+...+.|++|++.. ..++++..+|+.+.. ....|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-----~~~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-----DEEDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-----ccccc
Confidence 456799999999999999999998775 6679999999999999999998763 355899999998642 23489
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|+. +..++..++..+.++|+|||.+++..++. -..+.....+
T Consensus 165 Dav~L-------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v-----------------------------eQv~kt~~~l 208 (256)
T COG2519 165 DAVFL-------DLPDPWNVLEHVSDALKPGGVVVVYSPTV-----------------------------EQVEKTVEAL 208 (256)
T ss_pred CEEEE-------cCCChHHHHHHHHHHhCCCcEEEEEcCCH-----------------------------HHHHHHHHHH
Confidence 99986 44788999999999999999999875442 1234455667
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
++.||..++..
T Consensus 209 ~~~g~~~ie~~ 219 (256)
T COG2519 209 RERGFVDIEAV 219 (256)
T ss_pred HhcCccchhhh
Confidence 77788877653
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.26 E-value=2.9e-11 Score=120.42 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++...+ .+++++++|+.+. +....++||+|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~---l~~~~~~fDlI 612 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW---LKEAREQFDLI 612 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH---HHHcCCCcCEE
Confidence 789999999999999999983 22369999999999999999987543 3689999998642 11114689999
Q ss_pred Eehh-----------hhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIF-----------VLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.- .... ..+...++..+.++|+|||.+++..
T Consensus 613 ilDPP~f~~~~~~~~~~~~--~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDV--QRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EECCCCCCCCCccchhhhH--HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9831 1111 2456788899999999999998864
No 130
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=4e-11 Score=112.74 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..++.... ++.+|+++|+|+.+++.+++++...+ .++.+.++|+.... ....++||.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~fD~ 310 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK-DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDTFDR 310 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhccCCE
Confidence 44588999999999999999998764 45699999999999999999987654 45889999987421 123568999
Q ss_pred EEehh---hhhcc----------Ch-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIF---VLDAI----------NP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~---~l~~~----------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++.. .+..+ ++ ..+..+|..+.++|||||.++..+.+.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99721 12211 11 134678999999999999999987764
No 131
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=7.2e-11 Score=119.94 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=94.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-----------------CceEEEEecCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-----------------DRCHAFVCDVTSE 170 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----------------~~v~~~~~d~~~~ 170 (352)
+.+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|+...+ .+++++++|+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~--~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW--LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 5689999999999999999976 66799999999999999999876421 3689999998752
Q ss_pred CCCCCCCCCcceEEEehh--------------hhhc------------c----------ChhHHHHHHHHHHHhcCCCEE
Q psy11741 171 DWNPPFAPESLDIVLLIF--------------VLDA------------I----------NPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 171 ~~~~~~~~~~fD~V~~~~--------------~l~~------------~----------~~~~~~~~l~~~~~~LkpgG~ 214 (352)
..-...+||+|+++= +..| . ...-..+++.++.++|+|||.
T Consensus 197 ---~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 197 ---CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred ---ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 211123699999821 1100 0 012246788888899999999
Q ss_pred EEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH-HHHHhCCCceEEeee
Q psy11741 215 VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK-TMFESAGFVEKQNLI 273 (352)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~Gf~~~~~~~ 273 (352)
+++.. +. -..+.+. .++++.||..+....
T Consensus 274 l~lEi-G~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 274 MIFNM-GG-----------------------------RPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EEEEE-Cc-----------------------------cHHHHHHHHHHHHCCCCeeEEee
Confidence 99853 21 1234566 577788888776654
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.25 E-value=4.4e-11 Score=105.45 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... ....|+++|+++.+++.++++++..+ .++.+...|+.. ++...++||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~----~~~~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK-NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRV----FGAAVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC-CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHH----hhhhccCCCEE
Confidence 3578999999999999999988764 33489999999999999999987654 468888888763 22234569999
Q ss_pred Eehh------hhhc-------cCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 185 LLIF------VLDA-------INP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 185 ~~~~------~l~~-------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++.- ++.. .++ ..+..+|+.+.++|||||+|+.++.+.
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9721 1111 111 134569999999999999999887654
No 133
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.25 E-value=1.2e-10 Score=98.97 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...++||||+|.|..+..++..+. +|++.|.|+.|....+++- .+ +.|..+ ....+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~----~v~aTE~S~~Mr~rL~~kg------~~--vl~~~~----w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK----EVYATEASPPMRWRLSKKG------FT--VLDIDD----WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc----eEEeecCCHHHHHHHHhCC------Ce--EEehhh----hhccCCceEEEee
Confidence 467899999999999999998664 6999999999988877652 22 223332 1122568999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc-ccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC-LQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
.+++..- .++..+|+.+++.|+|+|++++...-+... ......+.. -........+. ..--..+.+.+.++.+|
T Consensus 158 LNvLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~p-yVE~~~g~~~~P~e~l~~~g~--~~E~~v~~l~~v~~p~G 232 (265)
T PF05219_consen 158 LNVLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRP-YVEFGGGKSNRPSELLPVKGA--TFEEQVSSLVNVFEPAG 232 (265)
T ss_pred hhhhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccc-cEEcCCCCCCCchhhcCCCCC--cHHHHHHHHHHHHHhcC
Confidence 9999987 788999999999999999999865332211 000101000 00000111110 11112334458899999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|+++....
T Consensus 233 F~v~~~tr 240 (265)
T PF05219_consen 233 FEVERWTR 240 (265)
T ss_pred CEEEEEec
Confidence 99987643
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=4.6e-11 Score=107.32 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++... ....|+++|+++.+++.|++++...+ .++.++.+|+... ....++||+|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~-~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCCccEEE
Confidence 478999999999999999998653 23479999999999999998876533 5688999997642 12235799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+...+.++ ...+.+.|+|||.+++..
T Consensus 155 ~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 155 VTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 87655443 234677899999988853
No 135
>KOG2940|consensus
Probab=99.24 E-value=5.6e-11 Score=97.84 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=115.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
...++|||||-|.+...+... .-.+++-+|.|-.|++.++..-. ....+...++|-. .+++.++++|+|+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e---~vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE----~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE---GVEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEE----FLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhc---chhheeeeecchHHHHHhhccCC-CceEEEEEecchh----cccccccchhhhhhh
Confidence 457999999999999998874 33478999999999999986532 2234556666654 567889999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec-C-CCeeeeccCHHHHHHHHHhCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR-G-DGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+|+. .++...+.++...|||+|.|+-..++......++....- ...... + .+....+....++..++.++|
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL---AelER~GGiSphiSPf~qvrDiG~LL~rAG 219 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL---AELEREGGISPHISPFTQVRDIGNLLTRAG 219 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH---HHHHhccCCCCCcChhhhhhhhhhHHhhcC
Confidence 999999 788999999999999999999988777666555432210 000011 1 122234556788999999999
Q ss_pred CceEEeeeee
Q psy11741 266 FVEKQNLIDR 275 (352)
Q Consensus 266 f~~~~~~~~~ 275 (352)
|....+..+.
T Consensus 220 F~m~tvDtDE 229 (325)
T KOG2940|consen 220 FSMLTVDTDE 229 (325)
T ss_pred cccceecccc
Confidence 9998876644
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=1.4e-10 Score=104.22 Aligned_cols=107 Identities=15% Similarity=0.274 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc--------ccCCCceEEEEecCCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE--------EYKPDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
+.+||++|||+|..+..+++.. +..+|++||+++.+++.|++.. ....++++++.+|+... +....+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~--~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~~~ 225 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE--TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSPSS 225 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhcCC
Confidence 6799999999999888888753 4568999999999999999631 11347899999998852 222356
Q ss_pred cceEEEehhhhh---ccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLD---AINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+||+|++...-. ....-.-..+++.+++.|+|||++++..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 899999864211 1111123568899999999999998863
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=3.3e-11 Score=104.10 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=83.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++|||+|||+|..+..++.... ++.+++++|+++.+++.|++++...+ .+++++.+|+.+....+. .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~-~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALP-EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 78999999999999998888764 45699999999999999999987643 579999999875211110 11468999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++.. ........+..+.++|+|||.+++..
T Consensus 148 VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98743 22456678899999999999999864
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=6.4e-11 Score=111.68 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=84.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE--EEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA--FVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~~f 181 (352)
.+.++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.++++++..+..+.+ ..+|..... .....++|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~--~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~f 310 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELA--PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQF 310 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--cccccccc
Confidence 34558899999999999999999876 4568999999999999999998765543433 555554211 11135789
Q ss_pred eEEEeh------hhhhccC-------hh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLLI------FVLDAIN-------PN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|.|++. +++.+.+ ++ .+..+|.++.++|||||.|+..+.+.
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999962 2333321 11 25689999999999999999987764
No 139
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1e-10 Score=101.86 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||.|.++..+++.. |..+++-+|+|..+++.|+++...++... .+...|+.+. . .++||+|+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~--p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-----v-~~kfd~Iis 230 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKS--PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-----V-EGKFDLIIS 230 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhC--CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----c-cccccEEEe
Confidence 4599999999999999999987 78899999999999999999988654333 5677777642 2 239999999
Q ss_pred hhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+=-+|.= ...-..+++....++|++||.|.+...
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 7666532 112234899999999999999998744
No 140
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-10 Score=100.21 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=99.3
Q ss_pred hhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccH----HHHHhhcCC---CCeEEEEEeCCHHH
Q psy11741 73 YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV----FPIVEHCKN---DNVFVYGCDFSENA 145 (352)
Q Consensus 73 y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~----~~l~~~~~~---~~~~v~gvD~s~~~ 145 (352)
...+.+.|+.+.......-..++|..... ......+|+-.||+||.-. ..+.+.+.. ...+|+|.|+|..+
T Consensus 64 ltin~T~FFR~~~~f~~l~~~v~p~l~~~--~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~ 141 (268)
T COG1352 64 LTINVTEFFRDPEHFEELRDEVLPELVKR--KKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV 141 (268)
T ss_pred hhhccchhccCcHHHHHHHHHHHHHHHhh--ccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence 34455678877765544444444422110 0113679999999999743 334444421 36799999999999
Q ss_pred HHHHHhcc-------------------cc-----------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 146 VNILKEHE-------------------EY-----------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 146 l~~a~~~~-------------------~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
|+.|+.-. .. ....|.|.+.|+....+ ..+.||+|+|.+|+-+++.
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~ 217 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDE 217 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCH
Confidence 99997542 00 01357788888876431 3578999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+...++++.++..|+|||+|++.
T Consensus 218 ~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 218 ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEc
Confidence 99999999999999999999996
No 141
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.2e-10 Score=110.45 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..+++... +..+|+++|+++.+++.+++++...+ .++.++++|+.... ..+ .++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~-~~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKF-AEKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chh-cccCCE
Confidence 34578999999999999999998753 45699999999999999999887644 45899999987531 112 268999
Q ss_pred EEehhh---hhcc----------ChhH-------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFV---LDAI----------NPNK-------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~---l~~~----------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++..- ...+ ++.+ +..+|+.+.++|||||.++..+..
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 997421 1110 1112 356899999999999999987654
No 142
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.20 E-value=9.6e-11 Score=96.19 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=94.0
Q ss_pred HhhccccCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHH
Q psy11741 45 VENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP 124 (352)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~ 124 (352)
+.+..++..+.+..+.|.+...-| +.|...... +-..|-...+..++.... ...+...|-|+|||.+.++..
T Consensus 18 lNE~LYT~~s~~A~~lf~~dP~~F-~~YH~Gfr~---Qv~~WP~nPvd~iI~~l~----~~~~~~viaD~GCGdA~la~~ 89 (219)
T PF05148_consen 18 LNEQLYTTSSEEALKLFQEDPELF-DIYHEGFRQ---QVKKWPVNPVDVIIEWLK----KRPKSLVIADFGCGDAKLAKA 89 (219)
T ss_dssp HHHHHHHS-HHHHHHHHHH-HHHH-HHHHHHHHH---HHCTSSS-HHHHHHHHHC----TS-TTS-EEEES-TT-HHHHH
T ss_pred HHHhHhcCCHHHHHHHHHhCHHHH-HHHHHHHHH---HHhcCCCCcHHHHHHHHH----hcCCCEEEEECCCchHHHHHh
Confidence 344444444555555555555433 433221110 112333334444443321 122256899999999988755
Q ss_pred HHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHH
Q psy11741 125 IVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQ 204 (352)
Q Consensus 125 l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~ 204 (352)
+. .+.+|...|+-.. +-.+..+|+. ..|+++++.|++++..+|... ++...+++
T Consensus 90 ~~-----~~~~V~SfDLva~--------------n~~Vtacdia----~vPL~~~svDv~VfcLSLMGT---n~~~fi~E 143 (219)
T PF05148_consen 90 VP-----NKHKVHSFDLVAP--------------NPRVTACDIA----NVPLEDESVDVAVFCLSLMGT---NWPDFIRE 143 (219)
T ss_dssp -------S---EEEEESS-S--------------STTEEES-TT----S-S--TT-EEEEEEES---SS----HHHHHHH
T ss_pred cc-----cCceEEEeeccCC--------------CCCEEEecCc----cCcCCCCceeEEEEEhhhhCC---CcHHHHHH
Confidence 42 3457999998542 2246778997 677889999999988877654 88899999
Q ss_pred HHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 205 VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 205 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+.|+|||||.|.|.+... ++-+.+.+.+.++..||......
T Consensus 144 A~RvLK~~G~L~IAEV~S---------------------------Rf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 144 ANRVLKPGGILKIAEVKS---------------------------RFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHEEEEEEEEEEEEGG---------------------------G-S-HHHHHHHHHCTTEEEEEEE
T ss_pred HHheeccCcEEEEEEecc---------------------------cCcCHHHHHHHHHHCCCeEEecc
Confidence 999999999999986431 23467889999999999988753
No 143
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.18 E-value=1.3e-10 Score=100.06 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=96.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..|+.+|||.|.|+|.++..|+..+. +..+|+..|+.+...+.|+++++..+ .++++...|+.+..+.... +..+|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDFD 115 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCccc
Confidence 44599999999999999999999887 66799999999999999999988743 5899999999753221111 36799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhc-CCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYL-KPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
.|+. +..++..++..+.++| +|||++.+-.++. -........|
T Consensus 116 avfL-------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----------------------------eQv~~~~~~L 159 (247)
T PF08704_consen 116 AVFL-------DLPDPWEAIPHAKRALKKPGGRICCFSPCI-----------------------------EQVQKTVEAL 159 (247)
T ss_dssp EEEE-------ESSSGGGGHHHHHHHE-EEEEEEEEEESSH-----------------------------HHHHHHHHHH
T ss_pred EEEE-------eCCCHHHHHHHHHHHHhcCCceEEEECCCH-----------------------------HHHHHHHHHH
Confidence 9986 3367778899999999 8999999865432 2244566778
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
++.||..++..
T Consensus 160 ~~~gf~~i~~~ 170 (247)
T PF08704_consen 160 REHGFTDIETV 170 (247)
T ss_dssp HHTTEEEEEEE
T ss_pred HHCCCeeeEEE
Confidence 88999888754
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=1.5e-10 Score=95.23 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+++++|+++.+++.++++... ..+++++.+|+.+ +++++.+||.|++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~----~~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~----~~~~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLE----RAARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALK----FDLPKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHh----cCCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhc----CCccccCCCEEEE
Confidence 367999999999999999998 456899999999999999988754 3578999999984 3344557999988
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+--. ++..+.+..+++.. .+.++|.+++.
T Consensus 84 n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 84 NLPY-NISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCc-ccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 6443 34333444444322 24578888886
No 145
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-10 Score=95.66 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+.-|++.. .+|+.+|..+...+.|+++++..+ .|+.+.++|-... ++ +...||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G---~~-~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG---WP-EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC---CC-CCCCcCE
Confidence 3458999999999999999998853 389999999999999999988755 4799999998753 22 2478999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++......++. .+.+.|+|||++++-.-
T Consensus 142 I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 999887766632 25567899999999643
No 146
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.16 E-value=9.2e-11 Score=98.96 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+..++...+ +...|+++|..+...+.|++++...+ .++.++.+|.... .+ ....||.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g---~~-~~apfD~ 144 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG---WP-EEAPFDR 144 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT---TG-GG-SEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc---cc-cCCCcCE
Confidence 34589999999999999998888765 55689999999999999999987633 5899999998652 22 2468999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++......++ ..+.+.|++||+|++-.
T Consensus 145 I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 145 IIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 99987765442 22566799999999953
No 147
>KOG2904|consensus
Probab=99.16 E-value=2.6e-10 Score=96.59 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=81.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCC-CCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSED-WNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~fD~V 184 (352)
+..|||+|||+|.++..++..+ +...++++|.|+.++..|.+|+... ...+.....+++... ++.+...+++|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L--~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL--PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC--CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4589999999999999999988 7889999999999999999998753 255666655444332 1334557899999
Q ss_pred Eehhh--h----hcc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFV--L----DAI------------------NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~--l----~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+++=- . ..+ ..+....++.-+.|+|+|||.+.+...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 98311 0 000 012445667778899999999999754
No 148
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.15 E-value=3e-09 Score=95.30 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=85.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhccc-cCCCc--eEEEEecCCCCCCCCCC--CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEE-YKPDR--CHAFVCDVTSEDWNPPF--APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~--v~~~~~d~~~~~~~~~~--~~~~ 180 (352)
+..|+|+|||+|.-+..|++.+.. ....++++|+|..+++.+.++.. ..-+. +.-+++|+.+....++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 568999999999998888877732 34689999999999999998877 33233 44578888764322221 1234
Q ss_pred ceEEEeh-hhhhccChhHHHHHHHHHHH-hcCCCEEEEEEe
Q psy11741 181 LDIVLLI-FVLDAINPNKMQHVINQVYK-YLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~-~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~ 219 (352)
..+|+.. +++.++++++...+|+++++ .|+|||.|++..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 5666665 48999999999999999999 999999998854
No 149
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.14 E-value=1.2e-09 Score=94.40 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----------------C-------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----------------P------------- 157 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------------~------------- 157 (352)
++.++||||||+-..-..-|.. .--+|+..|.++..++..++-.+.. +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 4779999999996543222221 3347999999998887655433110 0
Q ss_pred Cce-EEEEecCCCCCCCCCC---CCCcceEEEehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh
Q psy11741 158 DRC-HAFVCDVTSEDWNPPF---APESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK 231 (352)
Q Consensus 158 ~~v-~~~~~d~~~~~~~~~~---~~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 231 (352)
..| .++.+|+.+.. ++.. .+.+||+|++.++++.. +.+...++++++.++|||||.|++...
T Consensus 133 ~~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~----------- 200 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV----------- 200 (256)
T ss_dssp HHEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE-----------
T ss_pred HhhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE-----------
Confidence 113 36778998754 2211 12369999999999877 567899999999999999999999743
Q ss_pred cCccccCceeecCCCe-eeeccCHHHHHHHHHhCCCceEEee
Q psy11741 232 KGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+...+|..+... .....+.+.+++.++++||.+....
T Consensus 201 ----l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 ----LGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ----SS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ----cCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 223445444442 3346889999999999999988775
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.14 E-value=3.5e-10 Score=107.22 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .+++++++|+.+.....++.+++||+|+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4679999999999999999884 4589999999999999999876543 5799999998753212234456899998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.-- .......++.+.+ ++|+++++++.
T Consensus 373 ~dPP-----r~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 373 LDPP-----RAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ECcC-----CcChHHHHHHHHh-cCCCeEEEEEe
Confidence 7421 1122345555555 68999999874
No 151
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=6.8e-10 Score=106.96 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhcc--cc------CCCceEEEEecCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHE--EY------KPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~--~~------~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
+++|||+|||+|..+..+++. +. .+++++|+++.+++.|+++. .. ..++++++.+|..+. +...+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~---~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~---l~~~~ 371 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY---PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW---LRKLA 371 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC---CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---HHhCC
Confidence 679999999999999998874 43 69999999999999999842 11 236799999998752 22224
Q ss_pred CcceEEEehhhhhccCh---hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINP---NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++||+|++.......+. -.-..+++.++++|+|||++++..
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 68999999743222110 112457899999999999999864
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.11 E-value=2.8e-10 Score=100.73 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+||+||||+|..+..+++.. +..+++++|+++.+++.|++.+.. ..+++++..+|.... +....++||
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~---l~~~~~~yD 147 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF---LADTENTFD 147 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH---HHhCCCCcc
Confidence 5699999999999998888753 356899999999999999987542 135678888887532 111246899
Q ss_pred EEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|++......-+... ...+++.+++.|+|||++++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999865422111122 467889999999999999986
No 153
>PLN02366 spermidine synthase
Probab=99.10 E-value=4.4e-10 Score=100.51 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||+||||.|..+..+++.. +..+|+.+|+++.+++.|++.+.. ..++++++.+|+...... .++++||
T Consensus 92 pkrVLiIGgG~G~~~rellk~~--~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--~~~~~yD 167 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS--SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--APEGTYD 167 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--ccCCCCC
Confidence 7899999999999999998752 346899999999999999997643 246899999997642111 1256899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++...-...... .-..+++.+++.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99985433221111 13568899999999999998753
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=99.09 E-value=7.3e-10 Score=93.75 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcC-CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK-NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++... .+..+|+|+|+++.+++.|+++. .++.+...|+... ++ +++||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~----~~-~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTT----EF-DTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcc----cc-cCCccEEEE
Confidence 67999999999999999887542 13568999999999999999875 3478999998742 22 568999999
Q ss_pred hhhhhcc----------ChhHHHHHHHHHHHhcCCCEE
Q psy11741 187 IFVLDAI----------NPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 187 ~~~l~~~----------~~~~~~~~l~~~~~~LkpgG~ 214 (352)
+=-..-. +..-...++..+.++++||+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5322211 112355688888887777775
No 155
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.08 E-value=3.1e-10 Score=95.04 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+||||||.|.++..+|... |+..++|+|++...+..|.+++.. ...|+.++++|+.... ..-++++++|.|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~--Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN--PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-RRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS--TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-HHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC--CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-hhcccCCchheEEEe
Confidence 378999999999999999987 899999999999999999887665 4589999999987521 112346899999986
Q ss_pred hhhhccChh------HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPN------KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+---+.... -...++..++++|+|||.|.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 543322111 23478999999999999999875
No 156
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.08 E-value=4.3e-10 Score=102.75 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+++|||+-|-||.++...|. .|+ +|++||.|..+++.|++|++-++ ..+.++++|+.+......-...+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~----gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL----GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHh----cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 88999999999999999988 666 99999999999999999987644 45789999998632222222458999
Q ss_pred EEeh---------hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLI---------FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++- ....- ..+...++..+.++|+|||.+++.+..
T Consensus 294 IilDPPsF~r~k~~~~~~--~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 294 IILDPPSFARSKKQEFSA--QRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEECCcccccCcccchhH--HHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9981 11111 257788999999999999999997654
No 157
>PLN02476 O-methyltransferase
Probab=99.07 E-value=5e-10 Score=97.92 Aligned_cols=106 Identities=12% Similarity=0.171 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++|||+|||+|..+..++...+ ++.+++++|.++.+.+.|+++++..+ .+++++.+|+.+....+. -..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~-~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLP-ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 78999999999999999998765 45679999999999999999987644 579999999875211110 11368999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+.-. +..+....++.+.++|+|||.+++..
T Consensus 198 VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC-----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 99753 33567888999999999999999964
No 158
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.05 E-value=2.2e-10 Score=96.36 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++||||||++|.-+..+++.++ ++.+|+.+|+++...+.|++.++..+ .+++++.+|+.+....+. ...++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~-~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALP-EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTST-TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhc-ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 77999999999999999999875 56799999999999999999887644 689999999864211111 11358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-. ...+....+..+.++|+|||++++...
T Consensus 125 VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc-----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99854 345677888888999999999999743
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.04 E-value=7.9e-10 Score=92.92 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEE-ecCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFV-CDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~-~d~~~~~~~~~~~~~~fD~ 183 (352)
++++|||||++.|.-+..++..+.. ..+++.+|+++++.+.|+++++..+ .++..+. +|..+.... ...++||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~--~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR--LLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh--ccCCCccE
Confidence 4889999999999999999999852 6699999999999999999988744 4577777 476643211 34689999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-. ...+....+..+.++|+|||++++...
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 98743 346778899999999999999999753
No 160
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7.8e-10 Score=89.16 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..++.|+|+|||||.++...+.. ....|+|+|+++++++.+++|......++.|+++|+.+. .+.+|.|+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l---Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL---GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc---CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEE
Confidence 34778999999999999887774 346899999999999999999988778899999999853 56788888
Q ss_pred ehh
Q psy11741 186 LIF 188 (352)
Q Consensus 186 ~~~ 188 (352)
.+=
T Consensus 114 mNP 116 (198)
T COG2263 114 MNP 116 (198)
T ss_pred ECC
Confidence 853
No 161
>KOG3045|consensus
Probab=99.02 E-value=5.6e-09 Score=87.79 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=87.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
...|-|+|||.+.++.. ....|+..|+-+ .+-.+..+|+. ..|+++++.|+++++
T Consensus 181 ~~vIaD~GCGEakiA~~-------~~~kV~SfDL~a--------------~~~~V~~cDm~----~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-------ERHKVHSFDLVA--------------VNERVIACDMR----NVPLEDESVDVAVFC 235 (325)
T ss_pred ceEEEecccchhhhhhc-------cccceeeeeeec--------------CCCceeecccc----CCcCccCcccEEEee
Confidence 67899999999987652 344789999743 23467789998 577889999999887
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++.- .++..+++++.|+|+|||.+.|.+... +|.+...+...+...||.
T Consensus 236 LSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S---------------------------Rf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 236 LSLMG---TNLADFIKEANRILKPGGLLYIAEVKS---------------------------RFSDVKGFVRALTKLGFD 285 (325)
T ss_pred Hhhhc---ccHHHHHHHHHHHhccCceEEEEehhh---------------------------hcccHHHHHHHHHHcCCe
Confidence 77654 488899999999999999999986532 245667788999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
+....
T Consensus 286 ~~~~d 290 (325)
T KOG3045|consen 286 VKHKD 290 (325)
T ss_pred eeehh
Confidence 87754
No 162
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.02 E-value=9.6e-10 Score=93.57 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=88.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-ceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-RCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+||||||.|.++..+|+.. |...++|||+....+..|.+++...+. |+.+++.|+......+ .++++.|-|+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n--P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~-~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN--PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL-IPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC--CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc-CCCCCeeEEEEE
Confidence 478999999999999999987 889999999999999999988887777 9999999998653222 346699999987
Q ss_pred hhhhccCh------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 188 FVLDAINP------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 188 ~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+.--|... =-...+++.+.++|+|||.|.+.+-
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 65333211 1245789999999999999999753
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.9e-09 Score=93.74 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEe-cCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVC-DVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~-d~~~~~~~~~~~~~~fD 182 (352)
..+|..|||-=||||.++..... -|++++|+|++..|++-|+.|++..+ ....+... |++ .+|++++++|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl----~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~----~lpl~~~~vd 266 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL----MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT----NLPLRDNSVD 266 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh----cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc----cCCCCCCccc
Confidence 44588999999999999888776 88999999999999999999998754 44545554 887 5667777899
Q ss_pred EEEehh-----h-hhccC-hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIF-----V-LDAIN-PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~-----~-l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|++-- + ..-.. .+-...+|+.+.++|++||++++..
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999821 1 11111 2346789999999999999999964
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.97 E-value=2e-09 Score=97.49 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++. .+.+|+|+|+|+.|++.|++++...+ .+++++++|+.+.. ....++||+|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEE
Confidence 67999999999999999998 56799999999999999999987644 47999999987421 112357999997
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.-- .......+.++...++|++++++++
T Consensus 247 dPP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 521 1111122222333467888888764
No 165
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.96 E-value=3.9e-09 Score=88.51 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=74.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++.. ...+|+++|.++.+++.++++++..+ .++.++++|+... ++...++||+|++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~---l~~~~~~fDlV~~ 127 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF---LAQPGTPHNVVFV 127 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---HhhcCCCceEEEE
Confidence 679999999999999865543 33589999999999999999877543 4689999998642 2222457999998
Q ss_pred hhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 221 (352)
.=-.. - .-...+++.+.. +|+|+|++++....
T Consensus 128 DPPy~-~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 128 DPPFR-K--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCCC-C--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 53311 1 223345555554 37999999987543
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=2.8e-09 Score=100.94 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|++++...+ .+++++.+|+.+....++..+++||+|+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999999984 4589999999999999999886543 5799999998642111223346799998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.---. .-...+++.+.+ ++|+++++++
T Consensus 368 ~dPPr~----G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 368 LDPPRK----GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ECcCCC----CCCHHHHHHHHh-cCCCEEEEEc
Confidence 632100 012445555544 7899988775
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.95 E-value=1.3e-09 Score=89.71 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||+|||+|..++.++... ...+|+..|.++ .++.++.+++.+. .++.+...|-.+..........+||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 37899999999999999888863 467899999999 9999988876533 5677777665431100112346899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++..+++.- +....+++.+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999865 8889999999999999998777543
No 168
>KOG3191|consensus
Probab=98.95 E-value=3.3e-08 Score=78.91 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=98.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..-+||||||+|..+..|++... ++..+.++|+++.+++...+.++.++.++..++.|+.... ..++.|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-----~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-----RNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-----ccCCccEEEEC
Confidence 56799999999999999999876 7788999999999999988888777777889999987532 24788888762
Q ss_pred h--hh-------------hcc----ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 F--VL-------------DAI----NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~--~l-------------~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
- +. .+. ..+-..+++..+-.+|.|.|++++.....
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------- 171 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------- 171 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------------
Confidence 1 10 011 11235577778888999999999975432
Q ss_pred eeccCHHHHHHHHHhCCCceEEe
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-.++++..+++..||.+...
T Consensus 172 ---N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 172 ---NKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred ---cCHHHHHHHHhhcccceeEE
Confidence 23677888899999987654
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.92 E-value=2.8e-08 Score=89.02 Aligned_cols=154 Identities=16% Similarity=0.049 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-C--CceEEEE-ecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-P--DRCHAFV-CDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~--~~v~~~~-~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||||||+|.+...++... ++++++|+|+++.+++.|++++... + .++.+.. .|..........+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~--~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE--YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 36799999999998888887765 6889999999999999999998765 2 4566654 232211101112357899
Q ss_pred EEEehhhhhccChhH---HHHHHH----------------HHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec
Q psy11741 183 IVLLIFVLDAINPNK---MQHVIN----------------QVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~---~~~~l~----------------~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
+|+|+=-++.-..+. -..-.+ ...+++.+||.+-+...-.... ..+... ..++..
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~~----~gwfts 265 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAKQ----VLWFTS 265 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHhh----CcEEEE
Confidence 999964433221110 011111 1335566788766543221111 111111 011111
Q ss_pred CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 244 GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
- ...--+...+...+++.|...+.+
T Consensus 266 m---v~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 266 L---VSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred E---eeccCCHHHHHHHHHHcCCceEEE
Confidence 0 011246889999999999965544
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=4.1e-09 Score=91.09 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCC---CCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPF---APESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~---~~~~fD 182 (352)
.++|||||+++|.-++.++...+ ++.+++.+|.++...+.|++++...+ .+|+++.+|+.+....+.. ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~-~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALP-EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 77999999999999999998775 56799999999999999999987643 7899999998752111110 136899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+.-.- .......++.+.++|+|||++++..
T Consensus 159 ~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 9997532 3566778888889999999999864
No 171
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.88 E-value=4.4e-09 Score=92.51 Aligned_cols=109 Identities=21% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+++|||+-|-||.++...+. .|+ +|+.||.|..+++.|++|+..++ .++++++.|+.+....+. ..++||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~----gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~ 198 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA----GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDL 198 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH----TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEE
T ss_pred CCceEEecCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCE
Confidence 78999999999999998877 555 79999999999999999987543 578999999875211111 2468999
Q ss_pred EEeh---hhhhccC-hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLI---FVLDAIN-PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~---~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++- +.=.... ..+...++..+.++|+|||.|++....
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9981 1100000 257788999999999999999886544
No 172
>KOG3178|consensus
Probab=98.88 E-value=9e-09 Score=91.15 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=102.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-...+|+|.|.|+.+..+...+ |. +-|+++....+-.+..... +.|..+-+|+.+ +.| +-|+|++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq---~~P----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQ---DTP----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CC--CceeecCHHHHHhhhhhhc---CCcceecccccc---cCC----CcCeEEEE
Confidence 3678999999999999999865 44 6777777777766665543 338888899876 333 34699999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-hcCccccCcee--ecCCCeeeeccCHHHHHHHHHhC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-KKGRCLQDNFY--ARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+++||+++++..++|++++..|+|||.+++.+...+......- ..........+ ....+ ..-.+..++..++.++
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~--Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG--GKERTLKEFQALLPEE 321 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc--ceeccHHHHHhcchhh
Confidence 9999999999999999999999999999998764332000000 00000000000 00010 1125788999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.+..+..
T Consensus 322 gF~~~~~~~ 330 (342)
T KOG3178|consen 322 GFPVCMVAL 330 (342)
T ss_pred cCceeEEEe
Confidence 999877643
No 173
>KOG1331|consensus
Probab=98.87 E-value=4.7e-09 Score=89.97 Aligned_cols=99 Identities=24% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+..++|+|||.|..+.. +|...++|+|++...+..|++.-. .....+|+. .+|+.+.+||.+++.
T Consensus 46 gsv~~d~gCGngky~~~------~p~~~~ig~D~c~~l~~~ak~~~~-----~~~~~ad~l----~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV------NPLCLIIGCDLCTGLLGGAKRSGG-----DNVCRADAL----KLPFREESFDAALSI 110 (293)
T ss_pred cceeeecccCCcccCcC------CCcceeeecchhhhhccccccCCC-----ceeehhhhh----cCCCCCCccccchhh
Confidence 77899999999976432 166789999999998888765421 157788887 677888999999999
Q ss_pred hhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.++||+ +......+++++.+.|+|||..++..+.
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999999 4566778999999999999998876554
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.87 E-value=1.7e-08 Score=79.36 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V 184 (352)
..+.-|||+|.|+|.++..++++.- +...+++++.|+.......+... .+.++.+|+.+....+ .+.+..||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCC----CccccccchhhHHHHHhhcCCCeeeeE
Confidence 3478999999999999999998754 55689999999999999988763 3568888887643222 2446789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
+|..-+-.++.....++|+.+...|.+||.++.-.+++.
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 998877777778888999999999999999998888753
No 175
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.87 E-value=9e-09 Score=85.37 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCC
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
.+...+.+|||.+.|-|..++..++ .|+ .|+.++.++..++.|.-|.-. ....++.+.+|+.+.. ..+++
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~----rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V--~~~~D 203 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALE----RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV--KDFDD 203 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHH----cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH--hcCCc
Confidence 3455689999999999999998888 566 999999999999999877432 1246899999987642 34668
Q ss_pred CcceEEEeh---hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 179 ESLDIVLLI---FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 179 ~~fD~V~~~---~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
.+||+|+-. +++. ..=.-..+.++++|+|||||.++-..-++... |.. .--+.
T Consensus 204 ~sfDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------------yrG-------~d~~~ 259 (287)
T COG2521 204 ESFDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------------YRG-------LDLPK 259 (287)
T ss_pred cccceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------------ccc-------CChhH
Confidence 999999861 1111 11244678999999999999999865443210 000 01245
Q ss_pred HHHHHHHhCCCceEEe
Q psy11741 256 EVKTMFESAGFVEKQN 271 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~ 271 (352)
.+...|+++||.++..
T Consensus 260 gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 260 GVAERLRRVGFEVVKK 275 (287)
T ss_pred HHHHHHHhcCceeeee
Confidence 6888999999997765
No 176
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.86 E-value=4.8e-08 Score=81.00 Aligned_cols=123 Identities=21% Similarity=0.328 Sum_probs=91.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
..++|||||=+......-. .-..|+.||+.+. .-...+.|+.+. ++| -+.++||+|.+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~--------------~~~I~qqDFm~r--plp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQ--------------HPGILQQDFMER--PLPKNESEKFDVISL 110 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCC--------------CCCceeeccccC--CCCCCcccceeEEEE
Confidence 4799999998765543322 4457999999762 124567788754 222 23678999999
Q ss_pred hhhhhccC-hhHHHHHHHHHHHhcCCCEE-----EEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 187 IFVLDAIN-PNKMQHVINQVYKYLKPGGM-----VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 187 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
+.||.+++ +...-.+++++.+.|+|+|. |++..+.+ ++ ...++++.+.+..+
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv----------~NSRy~~~~~l~~i 168 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CV----------TNSRYMTEERLREI 168 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------Hh----------hcccccCHHHHHHH
Confidence 99999994 77888999999999999999 88764321 11 23356889999999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
++..||..+....
T Consensus 169 m~~LGf~~~~~~~ 181 (219)
T PF11968_consen 169 MESLGFTRVKYKK 181 (219)
T ss_pred HHhCCcEEEEEEe
Confidence 9999999988743
No 177
>KOG1499|consensus
Probab=98.86 E-value=6.5e-09 Score=91.83 Aligned_cols=104 Identities=21% Similarity=0.306 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+++.|||+|||+|.++...|++ ...+|+|+|.|.-+ +.|++.+..++ ..+++.++.+.+. .+| .++.|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP--~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP--VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC--ccceeEE
Confidence 4889999999999999999886 34589999998754 88888776543 4578888888754 344 6799999
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++-++-+++ -...+..+|-.=-+.|+|||.++-.
T Consensus 132 vSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 132 VSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 996654444 2234555555555889999998753
No 178
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.83 E-value=1.4e-08 Score=93.97 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=73.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..+ .++++..+|+.+.. ....++||+|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA---TAQMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---HhcCCCCCEEEE
Confidence 57899999999999999987 56789999999999999999986644 47999999986421 111246999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.=--.. -...+++.+. .++|+++++++.
T Consensus 307 DPPr~G----~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRRG----IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCC----CcHHHHHHHH-hcCCCeEEEEEe
Confidence 421111 1234445454 379999988864
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=2e-08 Score=88.34 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+- ..++.+|||+|||+|.++..+++. +.+++|+|+++.|++.++++... ..
T Consensus 10 nfl~d~~~~~~iv~~~~---------~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~-~~ 75 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAE---------DTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIA-AG 75 (258)
T ss_pred cccCCHHHHHHHHHhcC---------CCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhcc-CC
Confidence 56666666555444331 223789999999999999999984 45899999999999999988754 35
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
++.++++|+.+. ++ ..||.|+++.-.
T Consensus 76 ~v~ii~~D~~~~----~~--~~~d~Vv~NlPy 101 (258)
T PRK14896 76 NVEIIEGDALKV----DL--PEFNKVVSNLPY 101 (258)
T ss_pred CEEEEEeccccC----Cc--hhceEEEEcCCc
Confidence 799999999743 22 248999886543
No 180
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.80 E-value=1.5e-07 Score=81.86 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--------------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------------------------------- 154 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------------------------------- 154 (352)
.+.+||--|||.|+++..+|. .|..+.|.|.|--|+-..+-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 367999999999999999999 78899999999998765432110
Q ss_pred ---------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 155 ---------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 155 ---------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
..+.++....+|+.+.-. .+...++||+|+..+.+.-. .++...++.|.++|||||+-+ ..++--
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~-~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI--N~GPLl- 205 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYG-PDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI--NFGPLL- 205 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecC-CcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE--ecCCcc-
Confidence 011244555566553210 01113789999998877755 889999999999999999433 222210
Q ss_pred hhHhhhcCccccCceeec-CCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 226 VQLRFKKGRCLQDNFYAR-GDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
..+... ......--++.+|+..++++.||+++....
T Consensus 206 ------------yh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 206 ------------YHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------ccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000000 011112347899999999999999987654
No 181
>PLN02823 spermine synthase
Probab=98.79 E-value=2.6e-08 Score=90.06 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=79.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||.||+|.|..+..+++.. +..+++.||+++.+++.|++.+.. ..++++++.+|.... +...+++||
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~---L~~~~~~yD 178 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE---LEKRDEKFD 178 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH---HhhCCCCcc
Confidence 6799999999999999888753 456899999999999999988653 247899999998863 223357899
Q ss_pred EEEehhhhhcc--C-hh--HHHHHHH-HHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAI--N-PN--KMQHVIN-QVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~--~-~~--~~~~~l~-~~~~~LkpgG~l~~~ 218 (352)
+|++-.. ... . +. .-..+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998532 110 0 00 1235677 789999999998875
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.77 E-value=2.1e-08 Score=88.83 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.++++... .++.++++|+.+. ++++-.+|.|++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~----~~~~~~~~~vv~ 111 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKV----DLSELQPLKVVA 111 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcC----CHHHcCcceEEE
Confidence 37799999999999999999953 3899999999999999887643 6799999998853 222212477777
Q ss_pred hh
Q psy11741 187 IF 188 (352)
Q Consensus 187 ~~ 188 (352)
+-
T Consensus 112 Nl 113 (272)
T PRK00274 112 NL 113 (272)
T ss_pred eC
Confidence 53
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=3.6e-08 Score=82.29 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=72.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||++||+|.++..++.+. ...|+++|.++.+++.+++++...+ .++.++.+|+......+......||+|+
T Consensus 50 g~~vLDLfaGsG~lglea~srg---a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG---AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 7899999999999999999853 2389999999999999999876543 3688999998542111111122478887
Q ss_pred ehhhhhccChhHHHHHHHHHH--HhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVY--KYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 220 (352)
..=-... .....++..+. .+|+++|++++...
T Consensus 127 ~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 6322111 22334444443 46899998888643
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=3.3e-08 Score=88.03 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-- 156 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-- 156 (352)
+|..+..+....+..+. ..++.+|||||||+|.++..+++ .+.+|+|+|+++.|++.+++++...
T Consensus 17 nFL~d~~i~~~Iv~~~~---------~~~~~~VLEIG~G~G~LT~~Ll~----~~~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAA---------IKPTDTVLEIGPGTGNLTEKLLQ----LAKKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred cccCCHHHHHHHHHhcC---------CCCcCEEEEecCchHHHHHHHHH----hCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 56666666555444332 22378999999999999999988 4458999999999999999887543
Q ss_pred CCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 157 PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 157 ~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
..+++++.+|+.+. . ...||+|+++.
T Consensus 84 ~~~v~ii~~Dal~~----~--~~~~d~VvaNl 109 (294)
T PTZ00338 84 ASKLEVIEGDALKT----E--FPYFDVCVANV 109 (294)
T ss_pred CCcEEEEECCHhhh----c--ccccCEEEecC
Confidence 36799999999753 2 23689888753
No 185
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.73 E-value=8.6e-08 Score=81.91 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHH-HHhccccCCCceEEEEecCCCCCC-CCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNI-LKEHEEYKPDRCHAFVCDVTSEDW-NPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+++.|+.. .+++.. -+.+...|+....+ ..+..-..+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEE
Confidence 3779999999999999999984 34589999999988876 333321 11233344442111 111112367766
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc-cccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR-CLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+++.. .++..+.++|+| |.+++.. - | + |..+. .....-... ....+..-.+++...+.+
T Consensus 148 fiS~~----------~~l~~i~~~l~~-~~~~~L~-K-P---q--FE~~~~~~~~~giv~--~~~~~~~~~~~~~~~~~~ 207 (228)
T TIGR00478 148 FISLI----------SILPELDLLLNP-NDLTLLF-K-P---Q--FEAGREKKNKKGVVR--DKEAIALALHKVIDKGES 207 (228)
T ss_pred EeehH----------hHHHHHHHHhCc-CeEEEEc-C-h---H--hhhcHhhcCcCCeec--CHHHHHHHHHHHHHHHHc
Confidence 65433 246778889999 7666532 1 1 1 11111 000000000 001122345667777888
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
.||.+....
T Consensus 208 ~~~~~~~~~ 216 (228)
T TIGR00478 208 PDFQEKKII 216 (228)
T ss_pred CCCeEeeEE
Confidence 999987764
No 186
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.72 E-value=2.5e-07 Score=81.86 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE-EEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA-FVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.+.+|||+|||+|..+..+...++ .-.+++++|.|+.|++.++.........-.. ...+.... ..++ ...|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRD--FLPF--PPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcc--cccC--CCCcEEE
Confidence 377999999999988777766664 4568999999999999998876543211110 11111110 1111 2349999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+.++|..++......+++.+.+.+.+ .|++.+.+.+.. +-...++++.+.+.|
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G-------------------------f~~i~~aR~~l~~~~ 160 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG-------------------------FRRIAEARDQLLEKG 160 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH-------------------------HHHHHHHHHHHhhCC
Confidence 99999999667788888888887766 888877664321 233566777888888
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
+.++.-..
T Consensus 161 ~~v~APCp 168 (274)
T PF09243_consen 161 AHVVAPCP 168 (274)
T ss_pred CceECCCc
Confidence 87776443
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.72 E-value=1.3e-07 Score=83.11 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=59.3
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+. ..++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... ..
T Consensus 10 ~fl~d~~i~~~i~~~~~---------~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~-~~ 75 (253)
T TIGR00755 10 NFLIDESVIQKIVEAAN---------VLEGDVVLEIGPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSL-YE 75 (253)
T ss_pred ccCCCHHHHHHHHHhcC---------CCCcCEEEEeCCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCc-CC
Confidence 56666666555544332 2237899999999999999999853 4699999999999999887643 36
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
++.++.+|+..
T Consensus 76 ~v~v~~~D~~~ 86 (253)
T TIGR00755 76 RLEVIEGDALK 86 (253)
T ss_pred cEEEEECchhc
Confidence 78999999874
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=1.5e-07 Score=72.72 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=70.3
Q ss_pred CCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|. ++..|++ .|..|+|+|+++..++.++++. +.++++|+.+....+ -+.+|+|++
T Consensus 17 ~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~---y~~a~liys 83 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEI---YKNAKLIYS 83 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHH---HhcCCEEEE
Confidence 5789999999996 7777876 7889999999999999887763 688999998653211 357899987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.. ++.++...+.++++.+. .-+++...
T Consensus 84 ir-----pp~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 53 55677777777777554 44666543
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.71 E-value=2.1e-07 Score=87.88 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||+|||+|.-+..++..+. ....++++|+++.-++..+++++..+ .++.+...|...... ...+.||.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~-~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~---~~~~~fD~ 186 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMN-NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA---ALPETFDA 186 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh---hchhhcCe
Confidence 34588999999999999999999875 33489999999999999999988754 567777888764211 12467999
Q ss_pred EEe----hh--hhh-------ccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLL----IF--VLD-------AINP-------NKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~----~~--~l~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|++ +. ++. .+++ .-+..+|..+.++|||||+|+-++.+..
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 995 21 111 1111 1346889999999999999998887644
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.66 E-value=8.8e-08 Score=90.08 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=71.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+..|||||||+|.++...+++.. ....+|++|+.++.++...+++.. ..+.+|+++.+|+++. .. +.++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v----~l-pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV----EL-PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS----CH-SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC----CC-CCceeE
Confidence 57899999999999876666431 124699999999988877755432 2457899999999853 22 358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|++=..-.+...+-...+|....+.|||||+++=
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9994332222224556678888999999999874
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.66 E-value=8.1e-08 Score=79.49 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe---------EEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV---------FVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~---------~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~ 175 (352)
++..|||.-||+|.+.+..+... ... +++|+|+++.+++.|++|++..+ ..+.+.+.|+. .++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~--~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~----~l~ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMG--ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR----ELP 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHH--TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG----GGG
T ss_pred CCCEEeecCCCCCHHHHHHHHHh--hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh----hcc
Confidence 37799999999999998876655 332 38999999999999999987643 46889999998 455
Q ss_pred CCCCcceEEEehhhhhcc-C-----hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 176 FAPESLDIVLLIFVLDAI-N-----PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.++++|.|+++--...- . ..-...+++++.++|++..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 567899999995322211 1 123456778888999994444443
No 192
>KOG1500|consensus
Probab=98.66 E-value=1.8e-07 Score=81.72 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
...++.|||+|||+|.++...+.+ ...+|++++.|+ |.+.|++..+.+ ..+|.++.+-+.+. .+ +++.|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL---PEk~D 245 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI--EL---PEKVD 245 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc--cC---chhcc
Confidence 345889999999999999888885 445899999875 899998876653 36788888887753 22 47899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+|++--+-..+-.+......-..++.|+|.|.++-
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99984332222113334444456799999998875
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.65 E-value=2.2e-07 Score=76.79 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=76.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+++|+|+|.|.-++.++-.. |..+++.+|.+..-+...+......+ .|+++....+.+ +....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeeh
Confidence 89999999999999998877 88999999999987777766655433 579999998875 22468999999987
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+ ..+..++.-+..++++||.+++.
T Consensus 124 v------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 V------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp S------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred h------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 6 34567888899999999999885
No 194
>KOG3420|consensus
Probab=98.62 E-value=4e-08 Score=75.33 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++++|+|||.|-++...+-. ..-.|+|+|+.+.+++.+++|++....++.++++|+.+ +.+..+.||.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~---~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild----le~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP---KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD----LELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC---CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc----hhccCCeEeeEEe
Confidence 4889999999999988544431 34479999999999999999998877778999999985 3345688999988
Q ss_pred hhhh
Q psy11741 187 IFVL 190 (352)
Q Consensus 187 ~~~l 190 (352)
+--+
T Consensus 121 NppF 124 (185)
T KOG3420|consen 121 NPPF 124 (185)
T ss_pred cCCC
Confidence 5433
No 195
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.61 E-value=4e-08 Score=90.87 Aligned_cols=100 Identities=26% Similarity=0.380 Sum_probs=69.5
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEE---EeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYG---CDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~g---vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+||+|||+|.++..|.+ .+..+.. -|..+..++.|.++- +....+-+.. ..+|+++++||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~----r~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s--~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLE----RNVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLGS--QRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhh----CCceEEEcccccCCchhhhhhhhcC------cchhhhhhcc--ccccCCccchhhhh
Confidence 3579999999999999988 4433322 255556777776552 1222222111 27899999999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|..++-.....+ ..+|-++-|+|+|||+++++...
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 988765553222 46889999999999999997543
No 196
>KOG1661|consensus
Probab=98.58 E-value=1.9e-07 Score=76.46 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----------CCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----------PDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~v~~~~~d~~~~~~~~~ 175 (352)
++.+.||+|+|+|.++..++.....++...+|||.-++.++.+++++... ..++.++.+|.....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~---- 157 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY---- 157 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC----
Confidence 48899999999999998888777657777799999999999999986531 246778899987532
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+..+||.|++.... ..+.+++...|+|||.+++-
T Consensus 158 ~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 235789999987432 23445566778999999985
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.57 E-value=2.8e-07 Score=81.13 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||-|.|..++.+++.. +-.+++.||+++..++.|++.+... .++++.+..|..+.. .-...+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v---~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL---RDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH---HhCCCcCC
Confidence 3699999999999999999976 5678999999999999999987542 378899999987532 22234899
Q ss_pred EEEehhhhhccChh---HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPN---KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|++...-. ..+. .-..+++.++++|+++|+++..
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855422 1110 1267899999999999999997
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=9.4e-08 Score=88.12 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=67.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC-----------
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF----------- 176 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~----------- 176 (352)
.+|||++||+|.++..+++. ..+|+|+|+|+.+++.|++++...+ .++.++.+|+.+....+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 57999999999999988884 3489999999999999999986543 4799999998652111100
Q ss_pred -CCCcceEEEehhhhhccChhH---HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 177 -APESLDIVLLIFVLDAINPNK---MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 177 -~~~~fD~V~~~~~l~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
...+||+|+.. |+. ...+++.+. +|+++++++.
T Consensus 284 ~~~~~~D~v~lD-------PPR~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 284 LKSYNFSTIFVD-------PPRAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred ccCCCCCEEEEC-------CCCCCCcHHHHHHHH---ccCCEEEEEe
Confidence 01258999872 221 123344443 3788888864
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.54 E-value=1.7e-07 Score=90.05 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
....+||||||.|.++..+|... |...++|+|++...+..+.++.... -.|+.+...|+... ..-++++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~--p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~--~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN--PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI--LNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC--CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH--HHhcCcccccEEE
Confidence 36688999999999999999987 8899999999999888887765443 36788888776422 1125678999999
Q ss_pred ehhhhhccCh------hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINP------NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+---|... =-...+++.++++|+|||.+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8765333210 123478899999999999999864
No 200
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-06 Score=80.55 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=88.2
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+.++.+|||++++.|.-|..+++...+.+..|+++|.|+.=++..+++++..+ .++.....|...... .....++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~-~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE-LLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-cccccCcC
Confidence 3566789999999999999999999886556778999999999999999988755 456777877653221 11112369
Q ss_pred eEEEe------hhhhh-------ccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLL------IFVLD-------AINP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~------~~~l~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|.|++ .+++. ..++ .-+..+|..+.++|||||.|+.++.+.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 99997 11221 1111 235688999999999999999988764
No 201
>KOG1663|consensus
Probab=98.54 E-value=3.8e-07 Score=76.04 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCC--CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNP--PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~--~~~~~~fD~ 183 (352)
++++||||.=+|.-++.+|..++ .+.+|+++|+++...+.+.+..+.. ...|+++++++.+....+ ....++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp-~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALP-EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcC-CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 78999999999999999999987 5779999999999999997766543 367999999887632111 124689999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.-. ...+....+.++.+++|+||+|++..
T Consensus 153 aFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc-----chHHHHHHHHHHHhhcccccEEEEec
Confidence 98632 22455588899999999999999964
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=2.4e-07 Score=85.64 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||++||+|..++.++... +...|+++|+++.+++.+++|++..+ .++.+...|+... +.. .++||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~--~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---l~~-~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET--GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---LHE-ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH---Hhh-cCCCCEEEE
Confidence 4689999999999999998864 33589999999999999999986543 4567888888642 111 457999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.- +.....++..+.+.+++||+++++
T Consensus 132 DP------~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DP------FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC------CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 42 123356777767778999999997
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.50 E-value=2.4e-07 Score=85.14 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=49.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+|||+|||+|.++..+++.. ..|+|+|+++.|++.|++++...+ .++.++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999998853 489999999999999999987644 478999999865
No 204
>KOG3987|consensus
Probab=98.49 E-value=2.9e-08 Score=80.76 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.++||+|+|.|.++..++..+. +|++.++|..|....+++- -++ ....+ ....+-+||+|.|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe----evyATElS~tMr~rL~kk~----ynV----l~~~e----w~~t~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE----EVYATELSWTMRDRLKKKN----YNV----LTEIE----WLQTDVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH----HHHHHHhhHHHHHHHhhcC----Cce----eeehh----hhhcCceeehHHHH
Confidence 68999999999999999887553 6899999999999887652 111 11111 01114469999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCC-CEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKP-GGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 219 (352)
+++.-- .++-++|+.++.+|+| .|.+++.-
T Consensus 177 NlLDRc--~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 177 NLLDRC--FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhh--cChHHHHHHHHHHhccCCCcEEEEE
Confidence 988755 5788999999999999 78877653
No 205
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=2.2e-07 Score=72.11 Aligned_cols=139 Identities=20% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeecc
Q psy11741 173 NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFF 252 (352)
Q Consensus 173 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (352)
..+|.+++.|+|++..+++|++.++-..+++++++.|||||+|-+..+...-..+...... ..+.... ..-+.+....
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v-qvggpgp-ndhP~~r~v~ 117 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV-QVGGPGP-NDHPLHRIVK 117 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh-hccCCCC-CCCcHHHHHH
Confidence 4567899999999999999999899999999999999999999998765433322211110 0000000 0000112234
Q ss_pred CHHHHHHHHHhCCCceEEeeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchhhhhhhhhh---hh
Q psy11741 253 TREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRR---LQ 329 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~~~~~~~~~---~~ 329 (352)
+...+...+.++||.+.-. -+.++....+++.+| ++...+.+. -.
T Consensus 118 t~r~m~n~~m~~~~~~kl~-------------------------------e~ee~~g~fle~~~~-ven~~~~rs~~~d~ 165 (185)
T COG4627 118 TMRMMFNGFMDAGFVVKLL-------------------------------EYEEELGMFLEEDWF-VENGEIVRSFDLDQ 165 (185)
T ss_pred HHHHHHHHHHhhhheehhh-------------------------------hHHHHhhhhhhhccc-cccceeeeecCcCc
Confidence 6677888888888875422 234566666777777 332222222 23
Q ss_pred hccccccceeeeeeeh
Q psy11741 330 VNRGKQIKMYRVWIQA 345 (352)
Q Consensus 330 ~~~~~~~~~~r~~~~~ 345 (352)
.+|...+.++...+.+
T Consensus 166 rnre~rl~~~~Lilea 181 (185)
T COG4627 166 RNREIRLAFTSLILEA 181 (185)
T ss_pred ccccceecceEEEEEe
Confidence 3666666666665554
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=3e-06 Score=71.24 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCc-ceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPES-LDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~-fD~V~ 185 (352)
+.+++|||+|.|.-+.++|-.+ |..+++-+|....-+...+......+ .|++++++.+.+... ... ||+|+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~--p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-----~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF--PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-----EKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc--cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-----ccccCcEEE
Confidence 5799999999999999988555 88889999999887777766655543 669999998875321 123 99999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
++.+ ..+..++.-+..++++||.++.
T Consensus 141 sRAv------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehc------cchHHHHHHHHHhcccCCcchh
Confidence 9876 3455677778899999998765
No 207
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.46 E-value=3.4e-07 Score=81.14 Aligned_cols=81 Identities=14% Similarity=0.005 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++..+||++||.|..+..+++.++ +..+|+|+|.++.|++.|+++... ..++.++++|+.+....++..-.++|.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 477999999999999999999863 357999999999999999988765 568999999988532111111127999998
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
...
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 553
No 208
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.45 E-value=5.5e-07 Score=75.33 Aligned_cols=97 Identities=24% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++..|||+.||.|.+++.+|+.. .+..|+++|++|.+++..+++++.+. ..+....+|+.+.. + .+.+|-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---~--~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---P--EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc---C--ccccCEE
Confidence 37899999999999999999854 66789999999999999999877543 56889999988531 2 6889999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
++..- .....+|..+.+++++||++-
T Consensus 174 im~lp------~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLP------ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--T------SSGGGGHHHHHHHEEEEEEEE
T ss_pred EECCh------HHHHHHHHHHHHHhcCCcEEE
Confidence 98643 222346777888999999864
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.42 E-value=2.4e-07 Score=77.10 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=64.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 181 (352)
+.+|||+||++|.++..+++... +..+|+|+|+.+. ....++.+.++|+.+... .++...+.+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 58999999999999999998642 4589999999875 111345555555543210 011112689
Q ss_pred eEEEehhhhhcc---------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 182 DIVLLIFVLDAI---------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 182 D~V~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|+|+|-.+.... ...-....+.-+.+.|+|||.+++-.+.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 999996622111 1133445566666889999999987654
No 210
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.41 E-value=1.9e-07 Score=77.37 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+-||||.++...+.+ ....|+.||.++.++...++|++..+ .++..+..|+............+||+|+
T Consensus 43 g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 889999999999999988874 33489999999999999999987633 3578888886532111111367899999
Q ss_pred ehhhhhccChhH-HHHHHHHHH--HhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNK-MQHVINQVY--KYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~-~~~~l~~~~--~~LkpgG~l~~~~~~ 221 (352)
+.=-.. . .. ...++..+. .+|+++|.+++....
T Consensus 120 lDPPY~-~--~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 LDPPYA-K--GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp E--STT-S--CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ECCCcc-c--chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 842211 1 23 366777776 789999999997543
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.41 E-value=5.9e-07 Score=78.19 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCC-cc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPE-SL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~-~f 181 (352)
+++||=||-|.|..+..+++.. +..++++||+++.+++.|++.+.. ..++++++..|..... ....+ +|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l---~~~~~~~y 151 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL---KETQEEKY 151 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH---HTSSST-E
T ss_pred cCceEEEcCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH---HhccCCcc
Confidence 7899999999999999998753 356899999999999999987653 2478999999986522 11234 89
Q ss_pred eEEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++-..-...... --..+++.+++.|+|||++++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999984332111111 13578899999999999999975
No 212
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.40 E-value=4.3e-06 Score=67.78 Aligned_cols=106 Identities=25% Similarity=0.457 Sum_probs=73.1
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCC-CcceEEEehh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAP-ESLDIVLLIF 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~-~~fD~V~~~~ 188 (352)
++|+|||+|..+ .++.... .+..++|+|+++.++..++......... +.+...|.... ..++.. ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeee
Confidence 999999999976 3333211 2257899999999999965554321111 57777776642 144545 4899994444
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
..++.. ....+..+.+.++|+|.+++......
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444442 78899999999999999999876543
No 213
>KOG1269|consensus
Probab=98.39 E-value=4.6e-07 Score=82.53 Aligned_cols=108 Identities=23% Similarity=0.406 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++..++|+|||.|.....++.. ....++|+|.++..+..+....... ..+..++.+|+. ..|+++++||
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f---~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~----~~~fedn~fd 180 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF---KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG----KMPFEDNTFD 180 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh---ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh----cCCCCccccC
Confidence 334668999999999999988875 6678999999998888876654431 233445777776 5678899999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+.+..+.+|. .+...++++++++++|||+++..++.
T Consensus 181 ~v~~ld~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccC--CcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999 88999999999999999999987643
No 214
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.38 E-value=4.1e-06 Score=69.94 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHH----HHHHHhccccCCCceEEEEecCCCCCCCCCCCCCc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA----VNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
..++.+||-+|.++|....+++...+ +...|++++.|+.. +..|+++ .|+-.+..|+..+.....+ -+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~l-v~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRML-VEM 143 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTT-S--
T ss_pred CCCCCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcc-ccc
Confidence 34588999999999999999998876 56789999999954 4445444 6799999999865432223 358
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|++.-. .+++..-++.++...||+||.+++..
T Consensus 144 VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987432 34667777888889999999999863
No 215
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.37 E-value=7.2e-07 Score=71.69 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=62.3
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.|+|+.||.|..++.+|+ ...+|+++|+++..++.|+.|++-.+ .++.++++|+.+....+.. ...+|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~----~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~-~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR----TFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS-NKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHH----TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHH----hCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc-cccccEEEEC
Confidence 689999999999999999 45589999999999999999988754 6899999998863222221 1128999971
Q ss_pred -------------hhh-hccChhHHHHHHHHHHHhc
Q psy11741 188 -------------FVL-DAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 188 -------------~~l-~~~~~~~~~~~l~~~~~~L 209 (352)
+-+ ..+.+-+...+++.+.++.
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 122 2333445666777665553
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=98.35 E-value=3.5e-06 Score=73.42 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||=+|.|.|..++.+++. +. +|+-||+++.+++.+++.+.. ..++++++.. +.+ ...++||
T Consensus 73 pk~VLIiGGGDGg~~REvLkh---~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~------~~~~~fD 141 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY---DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD------LDIKKYD 141 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc---CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh------ccCCcCC
Confidence 789999999999999999996 43 999999999999999995432 3466776652 211 1246899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++-.. ......+.+++.|+|||+++...
T Consensus 142 VIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 9998643 11466788999999999999964
No 217
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=3.6e-06 Score=72.72 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=67.7
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.+.+.+.+...- ..++..|||||+|.|.+|..|++ .+..|+++++++.+++..++... ...
T Consensus 11 nFL~d~~v~~kIv~~a~---------~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~-~~~ 76 (259)
T COG0030 11 NFLIDKNVIDKIVEAAN---------ISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFA-PYD 76 (259)
T ss_pred ccccCHHHHHHHHHhcC---------CCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcc-ccc
Confidence 56666655444443322 23378999999999999999999 66689999999999999998875 347
Q ss_pred ceEEEEecCCCCCCCCCCCCC-cceEEEeh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPE-SLDIVLLI 187 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~-~fD~V~~~ 187 (352)
+++.+.+|+.+.. ++.- .++.|+++
T Consensus 77 n~~vi~~DaLk~d----~~~l~~~~~vVaN 102 (259)
T COG0030 77 NLTVINGDALKFD----FPSLAQPYKVVAN 102 (259)
T ss_pred ceEEEeCchhcCc----chhhcCCCEEEEc
Confidence 8999999998643 2211 56777774
No 218
>KOG2352|consensus
Probab=98.29 E-value=4.7e-06 Score=77.09 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=84.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
-++|-+|||.-.++..+.+. .-..|+-+|+|+..++....+.....+-+.+...|+. .+.+++++||+|+...
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~---G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~----~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN---GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMD----QLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc---CCCCceeccccHHHHHHHHhccccCCcceEEEEecch----hccCCCcceeEEEecC
Confidence 38999999999888887774 3347999999999999887765444567889999998 5678899999999999
Q ss_pred hhhccC-hh-------HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 189 VLDAIN-PN-------KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 189 ~l~~~~-~~-------~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.++++- ++ .....+.++.++|+|||+.+..+.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 888772 11 234678899999999999887665
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=3.4e-06 Score=68.49 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++|||+|+|+|..++..++. ....|+..|+.+..+...+-|.+.++.++.+...|... ++..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence 4899999999999998887775 34478999999999999999988888888999888763 3678999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
..+++.- ....+++.-..++...|-.+++.++++..
T Consensus 149 gDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 GDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 8887643 56667777444444555566676666543
No 220
>KOG2915|consensus
Probab=98.25 E-value=1.6e-05 Score=67.90 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...|+.+|||-|+|+|.++.++++..+ |..+++-.|+...-.+.|++.++. .+.++++..-|++..-+ ......+
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~-ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~a 178 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVA-PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKA 178 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhC-cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--ccccccc
Confidence 345699999999999999999999887 677899999999888888888776 45899999999997533 2336789
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|+.. ...+..++-.++.+||.+|.-++. +.+ .. -..+.-.+.+
T Consensus 179 DaVFLD-------lPaPw~AiPha~~~lk~~g~r~cs-FSP-CI--------------------------EQvqrtce~l 223 (314)
T KOG2915|consen 179 DAVFLD-------LPAPWEAIPHAAKILKDEGGRLCS-FSP-CI--------------------------EQVQRTCEAL 223 (314)
T ss_pred ceEEEc-------CCChhhhhhhhHHHhhhcCceEEe-ccH-HH--------------------------HHHHHHHHHH
Confidence 999863 245556667777788887753332 111 11 1133456678
Q ss_pred HhCCCceEEeee
Q psy11741 262 ESAGFVEKQNLI 273 (352)
Q Consensus 262 ~~~Gf~~~~~~~ 273 (352)
.++||..+....
T Consensus 224 ~~~gf~~i~~vE 235 (314)
T KOG2915|consen 224 RSLGFIEIETVE 235 (314)
T ss_pred HhCCCceEEEEE
Confidence 889998877643
No 221
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.23 E-value=2e-06 Score=74.34 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=97.3
Q ss_pred cchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccc--cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-C
Q psy11741 82 KDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGN--SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-D 158 (352)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~--~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~ 158 (352)
.++.++.+....+.... .-...||||||--. .+-.+++... |..+|+-+|..|..+..++..+.... .
T Consensus 51 ~nR~Fl~RaVr~la~~~--------GIrQFLDlGsGlPT~~nvHevAq~~~-P~aRVVYVD~DPvv~ah~ralL~~~~~g 121 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEA--------GIRQFLDLGSGLPTAGNVHEVAQRVA-PDARVVYVDNDPVVLAHARALLADNPRG 121 (267)
T ss_dssp HHHHHHHHHHHHHHCTT-----------EEEEET--S--SS-HHHHHHHH--TT-EEEEEESSHHHHHCCHHHHTT-TTS
T ss_pred HHHHHHHHHHHHHHHhc--------CcceEEEcccCCCCCCCHhHHHHhhC-CCceEEEECCCchHHHHHHhhhcCCCCc
Confidence 34566666666666542 14579999999653 5566666654 89999999999999999988766542 2
Q ss_pred ceEEEEecCCCCCCCCC-------CCCCcceEEEehhhhhccCh-hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh
Q psy11741 159 RCHAFVCDVTSEDWNPP-------FAPESLDIVLLIFVLDAINP-NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~-------~~~~~fD~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 230 (352)
...++++|+.+...-+. +.-.+-=.|++..++||+++ +++..+++.++..|.||.+|+++..+........
T Consensus 122 ~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~- 200 (267)
T PF04672_consen 122 RTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERA- 200 (267)
T ss_dssp EEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH-
T ss_pred cEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHH-
Confidence 37899999987431111 11122235677789999954 7899999999999999999999876543211110
Q ss_pred hcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
.. + ...+. ..+....+.+.+++..+|. ||+.++
T Consensus 201 ~~---~-~~~~~-~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 201 EA---L-EAVYA-QAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HH---H-HHHHH-HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HH---H-HHHHH-cCCCCceecCHHHHHHHcC--CCccCC
Confidence 00 0 01111 1234445678999999887 887765
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=6.2e-06 Score=68.48 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~~fD 182 (352)
++..|+|+||..|.++..+++... ++..|+|+|+.|- ...+++.++++|++..... ..+....+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~-~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLG-AGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhC-CCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 378999999999999999998875 5556999999763 1225699999999875421 112344579
Q ss_pred EEEehhh--------hhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFV--------LDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~--------l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++-.. .+|. ...-...++.-+..+|+|||.+++-.+.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 9997332 1222 1122334556667899999999997653
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.22 E-value=2.3e-05 Score=66.01 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=88.1
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCc-ceEEEeh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPES-LDIVLLI 187 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~~ 187 (352)
|.||||--|.+...|++.. ...+++++|+++..++.|+++....+ .++.+..+|-.+ .+ +.+. .|.|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~--~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~---~l--~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG--KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE---VL--KPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG---G----GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc---cc--CCCCCCCEEEEe
Confidence 6899999999999999964 45589999999999999999987643 679999999654 22 2333 7888876
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+ ...-...+|......++....|++.-. .....++.++.+.||.
T Consensus 74 GM----GG~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 74 GM----GGELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFE 118 (205)
T ss_dssp EE-----HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEE
T ss_pred cC----CHHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCE
Confidence 64 335667888888887777667887522 2467899999999999
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
+++...
T Consensus 119 I~~E~l 124 (205)
T PF04816_consen 119 IIDEDL 124 (205)
T ss_dssp EEEEEE
T ss_pred EEEeEE
Confidence 988754
No 224
>KOG1709|consensus
Probab=98.19 E-value=9.9e-06 Score=66.71 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+||+||-|-|.....+-++ +..+-+.|+..+..++..+...-....||....+--.+.. ..++++.||-|+.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~---~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl--~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA---PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL--NTLPDKHFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc---CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh--ccccccCcceeEe
Confidence 4899999999999888777665 4445677899999999998876555577777766444321 1245888999997
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
--.-.+. ++...+.+.+.++|||+|++-..
T Consensus 176 DTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 6554555 89999999999999999998764
No 225
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=9.6e-06 Score=75.98 Aligned_cols=102 Identities=23% Similarity=0.244 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+=||.|.+++.+|+ ...+|+|+|+++.+++.|+++++.++ .|+.|..+|+.+...... ....+|.|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-ccCCCCEEE
Confidence 467999999999999999997 66799999999999999999988754 669999999886432111 235789998
Q ss_pred ehhhhhccChhHHH-HHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQ-HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~ 219 (352)
..= +..-.. .+++.+.+ ++|..++++++
T Consensus 368 vDP-----PR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 368 VDP-----PRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ECC-----CCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 721 111122 34444444 57888888864
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.18 E-value=5.4e-06 Score=66.69 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...+.|+|+|+|.++...+. ..-+|++++.+|.-.+.|.++..-. ..+++.+.+|+... .+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~----~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y----~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAH----AAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY----DF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHh----hhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc----cc--cccceeHH
Confidence 46799999999999887777 4448999999999999999997543 37899999999843 23 46799998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
-..-..+-.+.+..+++.+.+.||.+|.++-.
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 54322233367788999999999999988754
No 227
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=1.1e-05 Score=66.04 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCC--cce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPE--SLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~--~fD 182 (352)
.+.++||+-+|||.++...+.+ ....++.||.+..++...++|.+..+ .++..+..|+.. .++.... .||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~---~L~~~~~~~~FD 116 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR---ALKQLGTREPFD 116 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH---HHHhcCCCCccc
Confidence 3899999999999999998885 44589999999999999999987655 778888998873 2222223 499
Q ss_pred EEEehhhhhccChhHHHHHHHH--HHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQ--VYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~ 220 (352)
+|+.-=-.+ ...-+....+.. -...|+|+|.+++...
T Consensus 117 lVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 117 LVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 999832222 100111222333 4467999999999643
No 228
>KOG0820|consensus
Probab=98.14 E-value=8.5e-06 Score=69.57 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++..|||||.|||.++..|.+ .+.+|+++++++.|+....++....+ ....+..+|+.+. +...||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~------d~P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT------DLPRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC------CCcccc
Confidence 34578999999999999999999 77899999999999999999887644 6788999998753 124689
Q ss_pred EEEe
Q psy11741 183 IVLL 186 (352)
Q Consensus 183 ~V~~ 186 (352)
.+++
T Consensus 126 ~cVs 129 (315)
T KOG0820|consen 126 GCVS 129 (315)
T ss_pred eeec
Confidence 9888
No 229
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.14 E-value=1.8e-05 Score=71.82 Aligned_cols=127 Identities=18% Similarity=0.278 Sum_probs=77.2
Q ss_pred chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC-----CCCeEEEEEeCCHHHHHHHHhccccCC
Q psy11741 83 DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK-----NDNVFVYGCDFSENAVNILKEHEEYKP 157 (352)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~ 157 (352)
....+...+..++.. .++.+|+|.+||+|.++..+.+.+. ....+++|+|+++.++..|+.+..-.+
T Consensus 30 TP~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 30 TPREIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp --HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 334455555555532 2367899999999999988876431 156799999999999999987653222
Q ss_pred ---CceEEEEecCCCCCCCCCC-CCCcceEEEehhhhhcc------------------C-hhHHHHHHHHHHHhcCCCEE
Q psy11741 158 ---DRCHAFVCDVTSEDWNPPF-APESLDIVLLIFVLDAI------------------N-PNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 158 ---~~v~~~~~d~~~~~~~~~~-~~~~fD~V~~~~~l~~~------------------~-~~~~~~~l~~~~~~LkpgG~ 214 (352)
.+......|..... .. ....||+|+++--+... + ...-..++..+.+.|++||+
T Consensus 102 ~~~~~~~i~~~d~l~~~---~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 102 IDNSNINIIQGDSLEND---KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp HHCBGCEEEES-TTTSH---SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ccccccccccccccccc---ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 23457778865421 12 24789999994211111 0 01223578889999999999
Q ss_pred EEEEeC
Q psy11741 215 VLFRDY 220 (352)
Q Consensus 215 l~~~~~ 220 (352)
+.+..+
T Consensus 179 ~~~Ilp 184 (311)
T PF02384_consen 179 AAIILP 184 (311)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 777643
No 230
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=69.52 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+|.+|||.=||.|.+++.+|... ...|+++|++|.+++..+++++.++ ..+..+++|+.... ...+.+|-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g---~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~----~~~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG---RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA----PELGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC---CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh----hccccCCEE
Confidence 38899999999999999999953 2349999999999999999987643 44889999998532 222789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... .....++..+.+.+++||++...+..+.+.. .......+.....+.
T Consensus 261 im~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~-----------------------~~~~~~~i~~~~~~~ 311 (341)
T COG2520 261 IMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPEDDI-----------------------EERPEKRIKSAARKG 311 (341)
T ss_pred EeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchhhc-----------------------ccchHHHHHHHHhhc
Confidence 98643 3445667778888899999998876543210 002356677777778
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
|+++...
T Consensus 312 ~~~~~v~ 318 (341)
T COG2520 312 GYKVEVL 318 (341)
T ss_pred cCcceEE
Confidence 7754433
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.11 E-value=6.5e-06 Score=75.80 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+.||+|..++.++.+.. ....|+++|+++.+++.+++|++..+ .++.+.+.|+... +.....+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~---l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV---LRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH---HHHhCCCCCEEEe
Confidence 35899999999999999998641 12489999999999999999987643 3578888888742 2112357999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.- + .....++..+.+.+++||+|+++
T Consensus 121 DP-f-----Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DP-F-----GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-C-----CCcHHHHHHHHHhcccCCEEEEE
Confidence 42 1 23346888889999999999997
No 232
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.09 E-value=2.2e-05 Score=78.73 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC----------------------------------------CCCeEEEEEeCCHHHH
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK----------------------------------------NDNVFVYGCDFSENAV 146 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~----------------------------------------~~~~~v~gvD~s~~~l 146 (352)
++..++|.+||+|++.+..+.... ....+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 467899999999999988765310 0123699999999999
Q ss_pred HHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhHHHHHHHHHHHhc---CCCEEEEEEe
Q psy11741 147 NILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNKMQHVINQVYKYL---KPGGMVLFRD 219 (352)
Q Consensus 147 ~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~~~~~l~~~~~~L---kpgG~l~~~~ 219 (352)
+.|++|+...+ ..+.+.++|+.+. ..+...++||+|+++--.. .+ ...+...+.+.+.+.+ .+|+.+++.+
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~--~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADL--KNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhc--ccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99999987654 4588999998753 1222245799999963221 11 2234445545544444 4888887765
Q ss_pred CC
Q psy11741 220 YG 221 (352)
Q Consensus 220 ~~ 221 (352)
..
T Consensus 348 ~~ 349 (702)
T PRK11783 348 SS 349 (702)
T ss_pred CC
Confidence 43
No 233
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.05 E-value=1.2e-05 Score=73.96 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=45.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+|||+-||.|.++..+|. ...+|+|+|+++.+++.|++++...+ .|++|..+++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3899999999999999999 55689999999999999999988754 689999887653
No 234
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.02 E-value=2.6e-05 Score=75.93 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC------CCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCC-CCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN------DNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNP-PFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~~~ 179 (352)
..+|||.|||+|.++..++..+.. ...+++|+|+++.++..|+.++...+ ..+.....|........ ....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 568999999999999998876621 12578999999999999988865432 23444555543221111 11135
Q ss_pred cceEEEeh
Q psy11741 180 SLDIVLLI 187 (352)
Q Consensus 180 ~fD~V~~~ 187 (352)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999983
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=0.00011 Score=59.70 Aligned_cols=143 Identities=22% Similarity=0.181 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH----------HHHHHHhccccCCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN----------AVNILKEHEEYKPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----------~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 174 (352)
..++.+|+|+-.|.|.++..++...+ +...|+++=..+. +-..+++... .|++.+-.+.. .+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg-p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~e~~~~~~~----A~ 117 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG-PKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANVEVIGKPLV----AL 117 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC-CceeEEEecchhhcccccchhhhhhhhhhhhhh---hhhhhhCCccc----cc
Confidence 44589999999999999999999887 4447777644332 1111211111 22222222222 12
Q ss_pred CCCCCcceEEEehhhhhc-----cChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 175 PFAPESLDIVLLIFVLDA-----INPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
. +.+..|++.....-|. +.+....++...+++.|||||++++.++... .+..+ .+....
T Consensus 118 ~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~--------pG~~~-------~dt~~~ 181 (238)
T COG4798 118 G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD--------PGSGL-------SDTITL 181 (238)
T ss_pred C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc--------CCCCh-------hhhhhh
Confidence 2 2344555555332221 2356788899999999999999999876532 11111 111223
Q ss_pred eccCHHHHHHHHHhCCCceEEe
Q psy11741 250 YFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+..+..-+....+.+||.....
T Consensus 182 ~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccChHHHHHHHHhhcceeeee
Confidence 4578888999999999987654
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.93 E-value=2.3e-06 Score=64.49 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHH---HHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSEN---AVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~---~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
||+|+..|..+..+++.++..+ .+++++|..+. .-+..++ .....+++++.++..+... .++.++||+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~--~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLP--SLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHH--HHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHH--HcCCCCEEEEEEC
Confidence 6899999999999988775222 37999999994 3333332 1123569999998754211 1224789999985
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.. |. .+.....++.+.+.|+|||++++.+
T Consensus 77 g~-H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 77 GD-HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC-CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 42 22 2667788899999999999999875
No 237
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.93 E-value=1.4e-05 Score=71.03 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||+++|.|.-+..++.... ....+++.|+++.-+...+.+....+ .++.....|..... .......||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~--~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMG-NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD--PKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTT-TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--HHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeeccc-chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--ccccccccch
Confidence 34588999999999999999999875 35689999999999999988887654 56777777776421 0112346999
Q ss_pred EEeh------hhhhcc-------Ch-------hHHHHHHHHHHHhc----CCCEEEEEEeCC
Q psy11741 184 VLLI------FVLDAI-------NP-------NKMQHVINQVYKYL----KPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~------~~l~~~-------~~-------~~~~~~l~~~~~~L----kpgG~l~~~~~~ 221 (352)
|++- .++..- ++ .-+..+|+.+.+.+ ||||+++-++.+
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 9981 111111 01 13557899999999 999999998765
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.92 E-value=6.3e-05 Score=63.35 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-------c---CCCceEEEEecCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------Y---KPDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------~---~~~~v~~~~~d~~~~~~~~~~ 176 (352)
++...+|||||.|......+... +-.+.+||++.+...+.|+.... . ....+.+..+|+.+... ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~-~~~ 118 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF-VKD 118 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH-HHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh-Hhh
Confidence 47789999999999988777654 33459999999988877765321 1 23567788888764210 000
Q ss_pred CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.-...|+|++++... + ++....|.++...||+|.+++-
T Consensus 119 ~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 003469999987642 3 4666677888888999977664
No 239
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00025 Score=59.88 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC--CeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND--NVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+...+|+|+|+..-+..|...+... -.+++.+|+|...++...+.+.. .+..+.-+++|.......+| ..++==+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEE
Confidence 6789999999999998888877422 25899999999988765444332 33456667788765332333 2233334
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++...++..+++++...+|.+++..|+||-++++..
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 555678999999999999999999999999998864
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=5.5e-05 Score=66.22 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccccHHHH-HhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPI-VEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.+|+=||||.=-++..+ ++... .+..++++|+++.+++.+++.... .+.++.|..+|+.+. +..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~----~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV----TYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc----ccccccCCE
Confidence 569999999986655444 43322 577899999999999999887662 347799999998742 222358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+...... ++.++-.+++.++.+.++||..+++..
T Consensus 196 V~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 99866543 234677899999999999999988863
No 241
>KOG2187|consensus
Probab=97.87 E-value=8.3e-05 Score=69.26 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+..+||+.||||.+++.+++ +...|+|+++++.+++-|+.++..++ .|.+|+++-+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 467899999999999999999 56689999999999999999988754 789999995544
No 242
>KOG3201|consensus
Probab=97.86 E-value=1.9e-05 Score=62.03 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=86.9
Q ss_pred CCeEEEEcCCccccHHH-HHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFP-IVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~-l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+||++|.|--.++-. +|... +...|...|-++..++..++..... ..++.....+.... .......+||
T Consensus 30 g~~ilelgggft~laglmia~~a--~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKA--PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeec--CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 67899999996555443 34433 7778999999999988876643221 12222222222111 1112245899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+|++..++.+- +....+.+.|..+|+|.|..++..+.+. -+.+.+.+...
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg----------------------------~sL~kF~de~~ 155 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG----------------------------QSLQKFLDEVG 155 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc----------------------------chHHHHHHHHH
Confidence 99999887654 6777888999999999999777543221 45777888888
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
..||.+.-.
T Consensus 156 ~~gf~v~l~ 164 (201)
T KOG3201|consen 156 TVGFTVCLE 164 (201)
T ss_pred hceeEEEec
Confidence 899887643
No 243
>KOG2730|consensus
Probab=97.85 E-value=7.5e-06 Score=67.67 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
...|+|.-||.|..+...+. .+..|+++|++|.-+..|+.+++-. +.+|+|+++|+.+....+.+....+|+|+
T Consensus 95 ~~~iidaf~g~gGntiqfa~----~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFAL----QGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred cchhhhhhhcCCchHHHHHH----hCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 56799999999999999988 6678999999999999999998864 36899999999764333444444566777
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
.+--.. .+.....-+-.+..+++|.|.
T Consensus 171 ~sppwg--gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 171 LSPPWG--GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred cCCCCC--CcchhhhhhhhhhhhcchhHH
Confidence 643322 234445555555556666543
No 244
>KOG2798|consensus
Probab=97.85 E-value=0.00026 Score=61.84 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc---cc----------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE---EY---------------------------- 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~---~~---------------------------- 155 (352)
...+||--|||.|+++..|+. .|..+-|-+.|--|+=...=-+ +.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~----~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLAC----LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred cCceEEecCCCchhHHHHHHH----hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccC
Confidence 367899999999999999999 6667777788776654322110 00
Q ss_pred --------CC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 156 --------KP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 156 --------~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
.+ .......+|+.+-- ..+-..+.||+|+..+.+... .+....|..|..+|||||+-+=.-+-...
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy-~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYH- 301 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVY-GTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYH- 301 (369)
T ss_pred ccccccccCCCCCCccccccceeEEe-cCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeee-
Confidence 00 00111223333210 111123579999988777655 78899999999999999986643211100
Q ss_pred hhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+....-. ......-++.+++..+....||+++...
T Consensus 302 ----F~d~~g~--------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 302 ----FEDTHGV--------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ----ccCCCCC--------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 0000000 0011223789999999999999998764
No 245
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00011 Score=66.83 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCC--CC----------------------------e-------EEEEEeCCHHHH
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKN--DN----------------------------V-------FVYGCDFSENAV 146 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~~----------------------------~-------~v~gvD~s~~~l 146 (352)
+..++..++|.=||+|++++..|....+ || . .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 4555678999999999999887775421 11 1 377999999999
Q ss_pred HHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhH----HHHHHHHHHHhcCCCEEEEEE
Q psy11741 147 NILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNK----MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 147 ~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~----~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.|+.|+...+ ..|+|.++|+... +-+.+.+|+|+|+--.. -+ +... ...+.+.+++.++-.+.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l----~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDL----KEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhC----CCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988754 5699999999853 22226899999953211 11 1122 223444555666666777775
Q ss_pred e
Q psy11741 219 D 219 (352)
Q Consensus 219 ~ 219 (352)
.
T Consensus 344 t 344 (381)
T COG0116 344 T 344 (381)
T ss_pred c
Confidence 3
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.82 E-value=0.00011 Score=65.85 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.++||+||++|.++..+++ .|.+|++||.++ |-.... ..++|.....|.... .| +.+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~---~p-~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKF---RP-PRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechh-cCHhhh-----CCCCEEEEeccCccc---CC-CCCCCCEEE
Confidence 4588999999999999999999 677999999665 222211 236788888887642 22 157899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
|-.+ +.+.++++-+.+.|..|
T Consensus 276 cDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred Eecc------cCHHHHHHHHHHHHhcC
Confidence 8654 45567778888888766
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=5.7e-05 Score=59.98 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
+...|+|+|||.|.++..++..+. .++.+|+|+|.++..++.+.++.+... .++.+..+++.... ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 99 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSDP 99 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccCC
Confidence 477999999999999999998331 177899999999999999988765432 34555555544211 1456
Q ss_pred ceEEEehhhhhccC
Q psy11741 181 LDIVLLIFVLDAIN 194 (352)
Q Consensus 181 fD~V~~~~~l~~~~ 194 (352)
.++++....-..++
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78888876665553
No 248
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.79 E-value=0.00018 Score=63.52 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=58.9
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.......+..+-.. ++..|||+|+|.|.++..|++. +.+++++|+++.+++..+++.. ...
T Consensus 11 nFL~~~~~~~~Iv~~~~~~---------~~~~VlEiGpG~G~lT~~L~~~----~~~v~~vE~d~~~~~~L~~~~~-~~~ 76 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDLS---------EGDTVLEIGPGPGALTRELLKR----GKRVIAVEIDPDLAKHLKERFA-SNP 76 (262)
T ss_dssp SEEEHHHHHHHHHHHHTCG---------TTSEEEEESSTTSCCHHHHHHH----SSEEEEEESSHHHHHHHHHHCT-TCS
T ss_pred CeeCCHHHHHHHHHhcCCC---------CCCEEEEeCCCCccchhhHhcc----cCcceeecCcHhHHHHHHHHhh-hcc
Confidence 5555655444444433222 3789999999999999999985 3689999999999999998765 457
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
+++++.+|+..
T Consensus 77 ~~~vi~~D~l~ 87 (262)
T PF00398_consen 77 NVEVINGDFLK 87 (262)
T ss_dssp SEEEEES-TTT
T ss_pred cceeeecchhc
Confidence 89999999985
No 249
>KOG4589|consensus
Probab=97.77 E-value=0.00014 Score=58.82 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-cCCCCCCC----CCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-DVTSEDWN----PPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-d~~~~~~~----~~~~~~~f 181 (352)
|+.+|||+||..|.++.-..+... |...|.|||+-. +. ....+.++++ |++++... ..+++...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~-p~g~v~gVDllh---------~~-p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVN-PNGMVLGVDLLH---------IE-PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhC-CCceEEEEeeee---------cc-CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 488999999999999988877765 777899999843 21 1234556665 77764321 12357889
Q ss_pred eEEEehhhhhc--cChhHHHH-------HHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLLIFVLDA--INPNKMQH-------VINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~~~~l~~--~~~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|+|++-..-.. +..-|... ++.-....++|+|.+++-.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 99998432110 01122223 3333445678999999976654
No 250
>KOG3115|consensus
Probab=97.77 E-value=9.4e-05 Score=60.52 Aligned_cols=109 Identities=14% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--------CCCceEEEEecCCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--------KPDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
...+.|||||-|.++..|+..+ |..-++|.+|--..-+..+.++.. .-.|+.....+.....-.+ +..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f--PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~-f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF--PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF-FEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccC--ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch-hhhc
Confidence 4568999999999999999988 888899999877766666655432 1245666666654321000 1122
Q ss_pred cceEEEehhhhhcc-Ch-----hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAI-NP-----NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~-~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+-.+..+---|+ .. --...++.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222211111111 00 012256778888999999988753
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00027 Score=57.95 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++.+||=+|..+|....+++.-. +...++|++.|+.+....-..+.. .+|+-.+..|+..+.....+ -+..|+|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv--~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi 149 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIV--GEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI 149 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhcc--CCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence 4458999999999999999999987 456899999999876655444332 36788899999864321122 3568998
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.--. .+++..-+..++...||+||.+++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 86321 4456666778889999999987775
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.75 E-value=0.00027 Score=63.06 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHHHHHHHhcc--c------cCCCceEEEEecCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHE--E------YKPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~l~~a~~~~--~------~~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
..+||-+|.|.|.-++.+.+. | -.+++-+|++|.|++.++++. . ...++++.+..|+.+ .+.-..
T Consensus 290 a~~vLvlGGGDGLAlRellky---P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---wlr~a~ 363 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY---PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---WLRTAA 363 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC---CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---HHHhhc
Confidence 568999999999999998886 5 568999999999999998442 1 134788999999875 233335
Q ss_pred CcceEEEehh------hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIF------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.||+||... ++.-+ .-..+...+++.|+++|.++++.-.
T Consensus 364 ~~fD~vIVDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred ccccEEEEeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCC
Confidence 6899999732 22211 2235667788999999999997543
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00039 Score=58.76 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++..+||+|+.||.++..+++. ....|+|+|..-..+..--++ .+++ .+...|+.... ...+ .+..|+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~-~~~~-~~~~d~~v 149 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLT-PEDF-TEKPDLIV 149 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCC-HHHc-ccCCCeEE
Confidence 4889999999999999999885 345899999988766544332 2333 33445555321 1112 23678998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc-cccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR-CLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
|--++- .+..+|..+..+++|+|.++...-.. |..+. .+...-....+ ..+..-..++.+++.+.
T Consensus 150 ~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQ-------FEagr~~v~kkGvv~d~--~~~~~v~~~i~~~~~~~ 215 (245)
T COG1189 150 IDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQ-------FEAGREQVGKKGVVRDP--KLHAEVLSKIENFAKEL 215 (245)
T ss_pred EEeehh-----hHHHHHHHHHHhcCCCceEEEEecch-------hhhhhhhcCcCceecCc--chHHHHHHHHHHHHhhc
Confidence 865543 44678888999999999877643211 11111 11100001111 11223467788889999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.+.....
T Consensus 216 g~~~~gl~~ 224 (245)
T COG1189 216 GFQVKGLIK 224 (245)
T ss_pred CcEEeeeEc
Confidence 999987743
No 254
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.70 E-value=0.00043 Score=63.59 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCeEEEEcCCccccHHHHHhhc-------------CCCCeEEEEEeCCHHHHHH-HHhccc---------c----CCCce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC-------------KNDNVFVYGCDFSENAVNI-LKEHEE---------Y----KPDRC 160 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~-------------~~~~~~v~gvD~s~~~l~~-a~~~~~---------~----~~~~v 160 (352)
..+|+|+|||+|..++.+.... ..|..+|..-|+...-... .+.... . .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998876654321 0135677777764321111 111000 0 01111
Q ss_pred EEE---EecCCCCCCCCCCCCCcceEEEehhhhhccC--hh----------------------------------HHHHH
Q psy11741 161 HAF---VCDVTSEDWNPPFAPESLDIVLLIFVLDAIN--PN----------------------------------KMQHV 201 (352)
Q Consensus 161 ~~~---~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~----------------------------------~~~~~ 201 (352)
-|. -+.+. .--+|.++.+++++.+++|+++ |+ |+..+
T Consensus 144 ~f~~gvpGSFY----~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~F 219 (386)
T PLN02668 144 YFAAGVPGSFY----RRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGF 219 (386)
T ss_pred eEEEecCcccc----ccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHH
Confidence 122 12222 2236789999999999999995 11 23345
Q ss_pred HHHHHHhcCCCEEEEEEeCCCC
Q psy11741 202 INQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 202 l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|+.=++-|.|||.+++...++.
T Consensus 220 L~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 220 LRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHHHhccCcEEEEEEecCC
Confidence 5555677899999999887764
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.68 E-value=9.5e-05 Score=58.76 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=48.1
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.|||+|||.|..+..++... +..+++++|+++.+.+.++++....+ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~--~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG--AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC--CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 38999999999999998865 66689999999999999999876532 458888877764
No 256
>KOG1122|consensus
Probab=97.67 E-value=0.00039 Score=63.25 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.+.++.+|||+++..|.-+.++|..+.+ ...|++.|.+..-+.....++...+ .+......|..+... -.++ ++||
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn-~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-~~~~-~~fD 314 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKN-TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-KEFP-GSFD 314 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcC-CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-cccC-cccc
Confidence 6778999999999999999999988763 4479999999999999988887655 455556677654321 1133 3899
Q ss_pred EEEehh------hhh------cc--------ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 183 IVLLIF------VLD------AI--------NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 183 ~V~~~~------~l~------~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
-|+.-. ++. .. -..-++++|..+..++++||+|+-++.+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 998621 110 00 00235678888999999999999987654
No 257
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00016 Score=64.04 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..+++|||+|.|.|.-+.++-.-+ |.. .++.++.|+..-++........ .........|++....+++. ...|++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~--Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIW--PDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccC--CCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 346789999999998776665555 332 5677788886655554433221 12233344455543334442 356777
Q ss_pred EEehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|+...-+-+. +...+...++.+..++.|||.|++.+.+.+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 7776654444 344566689999999999999999987654
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.58 E-value=0.00041 Score=59.36 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=61.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|+|||||.--++.++.... ++..++|+|++..+++....-....+.+......|+... .+....|+.+..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-----~~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-----PPKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-----HTTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-----CCCCCcchhhHH
Confidence 6799999999998888877654 678999999999999999888776777788888998742 236789999998
Q ss_pred hhhhcc
Q psy11741 188 FVLDAI 193 (352)
Q Consensus 188 ~~l~~~ 193 (352)
-+++.+
T Consensus 179 K~lp~l 184 (251)
T PF07091_consen 179 KTLPCL 184 (251)
T ss_dssp T-HHHH
T ss_pred HHHHHH
Confidence 888888
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00051 Score=60.12 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~ 183 (352)
..+++..+|+--|.|..+..+++.+. +..+++|+|-++.+++.|++.......++.+++..+.+....++ ...+++|.
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 34478999999999999999999884 45579999999999999999987766788888887664322111 12346666
Q ss_pred EEe
Q psy11741 184 VLL 186 (352)
Q Consensus 184 V~~ 186 (352)
|+.
T Consensus 100 iL~ 102 (314)
T COG0275 100 ILL 102 (314)
T ss_pred EEE
Confidence 664
No 260
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.56 E-value=0.0004 Score=63.27 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCeEEEEcCCccccHHHHHhhc--------------CCCCeEEEEEeCCHHHHH-HHHhcccc-----CCCc--eEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--------------KNDNVFVYGCDFSENAVN-ILKEHEEY-----KPDR--CHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--------------~~~~~~v~gvD~s~~~l~-~a~~~~~~-----~~~~--v~~~~~ 165 (352)
.-+|+|+||.+|..++.+.... ..+..+|+--|+-..-.. ..+..... ...+ +..+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 5689999999999888765532 113367888887442111 11111100 0112 223334
Q ss_pred cCCCCCCCCCCCCCcceEEEehhhhhccCh--h-----------------------------------HHHHHHHHHHHh
Q psy11741 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINP--N-----------------------------------KMQHVINQVYKY 208 (352)
Q Consensus 166 d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--~-----------------------------------~~~~~l~~~~~~ 208 (352)
.+.+ --+|+++.|++++.+++||++. + |+..+|+.=++-
T Consensus 97 SFy~----rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 97 SFYG----RLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp -TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----ccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4442 2367899999999999999841 1 344556556677
Q ss_pred cCCCEEEEEEeCCCCc
Q psy11741 209 LKPGGMVLFRDYGRYD 224 (352)
Q Consensus 209 LkpgG~l~~~~~~~~~ 224 (352)
|+|||++++...++.+
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8999999998776554
No 261
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.56 E-value=0.0007 Score=59.52 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=97.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
...|+.+|||-=.-...+.. . ++..++=+|.-. .++.-++.+.. ...+..++..|+. ..|.. .+..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~--~-~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~ 156 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW--P-DGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDP 156 (260)
T ss_pred CcEEEEeCCccccHHHhcCC--C-CCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCC
Confidence 34699999998665554432 1 346677777643 45544444432 2467888899987 33211 2333
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh--hhcCccccCceeecCCCeeeeccCHHH
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--FKKGRCLQDNFYARGDGTLVYFFTREE 256 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
..--++++-.++.+++++....+++.+.+...||+.+++...++....... .... ...............++.++
T Consensus 157 ~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 157 TAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPV---YHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHH---HHhhhcccccccccCCChhh
Confidence 445678888899999999999999999999889999999765542111000 0000 00000011122334578899
Q ss_pred HHHHHHhCCCceEEe
Q psy11741 257 VKTMFESAGFVEKQN 271 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~ 271 (352)
+..+|...||.....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998754
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.47 E-value=0.00018 Score=64.11 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~ 185 (352)
++..++|.-||.|..+..+++.+ +..+|+|+|.++.+++.|+++......++.+++++..+....+. ....++|.|+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l--~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQL--GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 47899999999999999999987 34789999999999999998876555678899888775321121 1235789888
Q ss_pred ehhh
Q psy11741 186 LIFV 189 (352)
Q Consensus 186 ~~~~ 189 (352)
+...
T Consensus 98 ~DLG 101 (305)
T TIGR00006 98 VDLG 101 (305)
T ss_pred Eecc
Confidence 8543
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0049 Score=51.58 Aligned_cols=124 Identities=9% Similarity=0.099 Sum_probs=91.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.++.||||--|.+...|.+.. +...+++.|+++..++.|.+++... ..+++...+|... .+. .+..+|+|+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~---~l~-~~d~~d~iv 90 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA---VLE-LEDEIDVIV 90 (226)
T ss_pred CCceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc---ccC-ccCCcCEEE
Confidence 5669999999999999999976 6778999999999999999988763 3667777887653 222 245789988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..++- -.-...+|++-.+-|+.=-.+++. ++ -...+++.++.+.+
T Consensus 91 IAGMG----G~lI~~ILee~~~~l~~~~rlILQ-Pn------------------------------~~~~~LR~~L~~~~ 135 (226)
T COG2384 91 IAGMG----GTLIREILEEGKEKLKGVERLILQ-PN------------------------------IHTYELREWLSANS 135 (226)
T ss_pred EeCCc----HHHHHHHHHHhhhhhcCcceEEEC-CC------------------------------CCHHHHHHHHHhCC
Confidence 76542 245567777777777643456663 11 34677899999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 136 ~~I~~E~ 142 (226)
T COG2384 136 YEIKAET 142 (226)
T ss_pred ceeeeee
Confidence 9988754
No 264
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.39 E-value=0.00098 Score=59.06 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=47.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCC-CCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDW-NPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~-~~~~~~~~fD~ 183 (352)
..++||||||...+--.|.... .+++++|.|+++..++.|+++.... ..+|+++...-....+ .+....+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 5689999999987654454444 6899999999999999999998765 3668777553222111 12223468999
Q ss_pred EEehhhhhc
Q psy11741 184 VLLIFVLDA 192 (352)
Q Consensus 184 V~~~~~l~~ 192 (352)
.+|+=-++.
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999766554
No 265
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.21 E-value=0.025 Score=48.31 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC-CCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF-APESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V~ 185 (352)
.+++||-+|=.-- .+++++... ...+|+.+|+++.+++..++.++..+.+++.+..|+.+ .+|. -.++||+++
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~---~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD---PLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS------TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc---cCCHHHhcCCCEEE
Confidence 3889999985542 334444322 66799999999999999999888777779999999987 3432 258999998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCE-EEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGG-MVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
..=. + +.+-..-++.+..+.||..| ..++.--...... .-..++.+.+.+.
T Consensus 118 TDPP-y--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~-------------------------~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 118 TDPP-Y--TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP-------------------------DKWLEVQRFLLEM 169 (243)
T ss_dssp E----S--SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H-------------------------HHHHHHHHHHHTS
T ss_pred eCCC-C--CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH-------------------------HHHHHHHHHHHHC
Confidence 7321 1 23566788899999998655 5455322111000 0112567778899
Q ss_pred CCceEEeeeeee
Q psy11741 265 GFVEKQNLIDRR 276 (352)
Q Consensus 265 Gf~~~~~~~~~~ 276 (352)
||.+.+...+..
T Consensus 170 gl~i~dii~~Fn 181 (243)
T PF01861_consen 170 GLVITDIIPDFN 181 (243)
T ss_dssp --EEEEEEEEEE
T ss_pred CcCHHHHHhhhc
Confidence 999988765443
No 266
>KOG1596|consensus
Probab=97.21 E-value=0.0019 Score=54.45 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH----HHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN----AVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
..++.+||-+|+++|.....+..... |..-|++++.|.. .+..|+++ .||-.+..|++.+.. .-..-+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG-peG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~K-YRmlVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG-PEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAK-YRMLVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC-CCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchh-eeeeeee
Confidence 44589999999999999888888776 6668999999984 34444443 678888889875321 1111235
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|+|++.-. .++....+.-+....||+||-++++.
T Consensus 227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 677765321 23444445566778899999999864
No 267
>PRK10742 putative methyltransferase; Provisional
Probab=97.19 E-value=0.0015 Score=56.09 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=54.9
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------C----CceEEEEecCCCCCCCCCCCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------P----DRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~----~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
+|||+-+|+|..+..++. .|++|+++|-++.+....+.+.... . .+++++.+|..... .-...
T Consensus 91 ~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L---~~~~~ 163 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL---TDITP 163 (250)
T ss_pred EEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH---hhCCC
Confidence 899999999999999998 6778999999999888877665541 1 46788888876532 21234
Q ss_pred cceEEEe
Q psy11741 180 SLDIVLL 186 (352)
Q Consensus 180 ~fD~V~~ 186 (352)
+||+|++
T Consensus 164 ~fDVVYl 170 (250)
T PRK10742 164 RPQVVYL 170 (250)
T ss_pred CCcEEEE
Confidence 7999998
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.10 E-value=0.00091 Score=55.82 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~~~f 181 (352)
+..|+|+|.-.|.-+..+|..+. ....+|+|+|+.................+|+++++|..+...-.+. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 67899999999988877765441 1556999999965433222211111237899999998764311111 11233
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+|+. .+-|.. ++..+.|+....+++||+++++.+.
T Consensus 113 vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 113 VLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred eEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEec
Confidence 34443 232322 6778889999999999999999653
No 269
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.98 E-value=0.0011 Score=62.11 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe--EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV--FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
-..|+|...|.|.++.+|... +-+ +|+-+ ..+..+...-.+- .--...|-.+ .++.-+.+||+|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~-~~~ntL~vIydRG------LIG~yhDWCE---~fsTYPRTYDLlH 432 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD---PVWVMNVVPV-SGPNTLPVIYDRG------LIGVYHDWCE---AFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeeecccccHHHHHhccC---CceEEEeccc-CCCCcchhhhhcc------cchhccchhh---ccCCCCcchhhee
Confidence 457999999999999998773 322 23322 2222222222221 1223345443 3333468999999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+..++... +..++..++-++-|+|+|||.+++.+
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99888765 56788899999999999999999974
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.81 E-value=0.039 Score=53.17 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=89.6
Q ss_pred HHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCC--CeE
Q psy11741 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKND--NVF 135 (352)
Q Consensus 58 ~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~--~~~ 135 (352)
-..|....++| .+--+.....|+..+....-....+.+ .+..+|.|..||+|.+.....+.+... ...
T Consensus 147 G~~yE~ll~~f-a~~~~k~~GEfyTP~~v~~liv~~l~~---------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~ 216 (489)
T COG0286 147 GDAYEYLLRKF-AEAEGKEAGEFYTPREVSELIVELLDP---------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF 216 (489)
T ss_pred hHHHHHHHHHH-HHhcCCCCCccCChHHHHHHHHHHcCC---------CCCCeecCCCCchhHHHHHHHHHHHhhcccee
Confidence 45555555544 332233223555555433322222222 225699999999999988887776422 367
Q ss_pred EEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCC-CCCCCcceEEEehhhhh---cc----------------
Q psy11741 136 VYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNP-PFAPESLDIVLLIFVLD---AI---------------- 193 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~-~~~~~~fD~V~~~~~l~---~~---------------- 193 (352)
++|.|+++.....|+-+.--.+.+ +....+|-....... ....+.||.|+++--+. +.
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYG 296 (489)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccC
Confidence 999999999999999886544332 344445443321111 12346799988832110 00
Q ss_pred ----ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 194 ----NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 194 ----~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....-...++.+...|+|||+..+..
T Consensus 297 ~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 297 VFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred CCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 11123678899999999988666543
No 271
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.75 E-value=0.0074 Score=47.18 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccC---------hhHHHHHHH
Q psy11741 135 FVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN---------PNKMQHVIN 203 (352)
Q Consensus 135 ~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~---------~~~~~~~l~ 203 (352)
+|+|+|+-+.+++.++++....+ .+++++..+=...... .+.+++|+++.+. .+++ ++.-..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999987643 4688887654432211 2235899988753 3332 345668899
Q ss_pred HHHHhcCCCEEEEEEeCCC
Q psy11741 204 QVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 204 ~~~~~LkpgG~l~~~~~~~ 222 (352)
.+.++|+|||++.+..+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 9999999999999987653
No 272
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.74 E-value=0.0011 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.615 Sum_probs=31.6
Q ss_pred cceEEEehhhhhcc----ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAI----NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+||+|+|..+.-++ .++-+..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998875544 3567889999999999999999995
No 273
>KOG2793|consensus
Probab=96.62 E-value=0.015 Score=50.10 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=64.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc------cccCCCceEEEEecCCCCCCCCCCCCCc-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHAFVCDVTSEDWNPPFAPES- 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~------~~~~~~~v~~~~~d~~~~~~~~~~~~~~- 180 (352)
..+||++|+|+|..+...+.. .+.+|+..|+..........+ ....+..+.....+-.... ...+....
T Consensus 87 ~~~vlELGsGtglvG~~aa~~---~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~-~~~~~~~~~ 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL---LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNAL-DVSFRLPNP 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH---hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcc-cHhhccCCc
Confidence 567999999999766666654 566888888765433332211 1111223433333322211 11111233
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|+|+++.++.+- .....++..++.+|..+|.+++...
T Consensus 163 ~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999988765 6677778888888888886666543
No 274
>KOG2198|consensus
Probab=96.57 E-value=0.026 Score=51.00 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCC--CeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCC-----
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKND--NVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNP----- 174 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~----- 174 (352)
+...++.+|||+++..|.-+..+.+..-.. ...|++=|.++.=+.......... .+++.....|+....-..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 356679999999999999998888876322 237999999987666665554332 244445555554321110
Q ss_pred CCCCCcceEEEehh------hhhc--------------cC-hhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 175 PFAPESLDIVLLIF------VLDA--------------IN-PNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 175 ~~~~~~fD~V~~~~------~l~~--------------~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
+.....||-|++-- ++.+ .+ +.-+..+|.+..++||+||.++-++.+..
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12234689988710 0100 00 12345789999999999999999887643
No 275
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.47 E-value=0.0098 Score=52.68 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC------------------CCCeEEEEEeCCH--HHHHHHHhccc------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK------------------NDNVFVYGCDFSE--NAVNILKEHEE------------ 154 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~------------------~~~~~v~gvD~s~--~~l~~a~~~~~------------ 154 (352)
+..+||.||.|.|.-...++..+. .+..+++.||+.+ ..+......+.
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 457999999999988888777661 1225899999965 23333222211
Q ss_pred ------cCCCceEEEEecCCCCCCCC--C-CCCCcceEEEehhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNP--P-FAPESLDIVLLIFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~--~-~~~~~fD~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
...-++.|.+.|+.....+. . +...+.++|...+++.-+ +...-.++|.++-..++||..|+|.+.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 12256889999998643210 0 112357888888776654 446677899999999999999998763
No 276
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.049 Score=49.25 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC------CCeEEEEEeCCHHHHHHHHhccc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN------DNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~------~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
+..++|+|.|+|.++..+++.... ...++.-|++|+...+.=+++++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 568999999999999988876521 25689999999998877666654
No 277
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.35 E-value=0.054 Score=48.54 Aligned_cols=159 Identities=11% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCC-----CC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPF-----AP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~-----~~ 178 (352)
...|+-+|||--.-+..+-. . .+..|+-+|. |+.++.=++.+...+ ...+++..|+.+..|...+ ..
T Consensus 93 ~~qvViLgaGLDTRayRl~~--~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDW--P-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred ccEEEEeccccccceeecCC--C-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 46799999987544333322 1 3577888887 445555555554432 3689999999966553333 34
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-cCccccCc-eeecCCCeeeeccCHHH
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-KGRCLQDN-FYARGDGTLVYFFTREE 256 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 256 (352)
..--++++-+++.+++++...+++..|..++.||..++.....+.. ...... ........ .............+..+
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 247 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGS-LRDRLRRPAARKTMRGEDLDRGELVYFGDDPAE 247 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHH-HHhcccchhhhhhccccccccccceeccCCHHH
Confidence 5566788888999999999999999999999998888875431111 110000 00000000 00011122233456899
Q ss_pred HHHHHHhCCCceEEe
Q psy11741 257 VKTMFESAGFVEKQN 271 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~ 271 (352)
+..++.+.||.....
T Consensus 248 ~~~~l~~~g~~~~~~ 262 (297)
T COG3315 248 IETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHhcCEEEEec
Confidence 999999999988765
No 278
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.27 E-value=0.014 Score=52.12 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-CCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-APESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~~~~fD~V 184 (352)
++..++|+--|.|..+..+++.+ ++.+++|+|-++.+++.|+++......++.++..++.+....+. . ...++|.|
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~--~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKL--PNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhC--CCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 37899999999999999999988 56899999999999999999887666778888887764321111 1 23466777
Q ss_pred Ee
Q psy11741 185 LL 186 (352)
Q Consensus 185 ~~ 186 (352)
+.
T Consensus 98 L~ 99 (310)
T PF01795_consen 98 LF 99 (310)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 279
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.13 E-value=0.025 Score=56.94 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=65.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcC-----CC-----CeEEEEEeCCH---HHHHHHHhc-----------cc---------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK-----ND-----NVFVYGCDFSE---NAVNILKEH-----------EE--------- 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~-----~~-----~~~v~gvD~s~---~~l~~a~~~-----------~~--------- 154 (352)
.-+|+|+|-|+|.......+... .+ ..+++++|..| +.+..+.+. ..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 46899999999997766665441 12 46889999643 333332211 10
Q ss_pred ------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHH-HHHHHHHHHhcCCCEEEEEE
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM-QHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~~l~~~~~~LkpgG~l~~~ 218 (352)
.....+++..+|+.+. ++.....+|+++.-..--.-+++.+ ..+++.++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~---~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANEL---LPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHH---HHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0112445667787642 2222356999998543222233333 46899999999999998854
No 280
>KOG2920|consensus
Probab=96.12 E-value=0.0032 Score=54.78 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHh-cc----------ccCCCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE-HE----------EYKPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~-~~----------~~~~~~v~~~~~d~~~~~~~~~ 175 (352)
.+++|||+|||+|...+..... ....+...|++...++.-.- +. .+...-......++.+ +...
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~---~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d--g~~~ 190 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK---GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD--GVFN 190 (282)
T ss_pred cCceeEecCCcccccchhhhhh---ccceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc--chhh
Confidence 3889999999999988877663 22677788887766621110 00 0000001111110000 0111
Q ss_pred CCC-CcceEEEehhhhhccChhHHHHH-HHHHHHhcCCCEEEEEE
Q psy11741 176 FAP-ESLDIVLLIFVLDAINPNKMQHV-INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~-~~fD~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~~~ 218 (352)
... -.||+|.++.++... .....+ +.....+++++|++++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hccccchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhhh
Confidence 111 279999998888766 444554 55566777889987764
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.97 E-value=0.032 Score=50.48 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|+=+|+| .|..+..+|+. .+++|+++|.|+.-++.|++.-.. .++... +.. ....-.+.||+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka---~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~--~~~-~~~~~~~~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKA---MGAEVIAITRSEEKLELAKKLGAD-----HVINSS--DSD-ALEAVKEIADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH---cCCeEEEEeCChHHHHHHHHhCCc-----EEEEcC--Cch-hhHHhHhhCcE
Confidence 4568899888886 45678888887 558999999999999999887432 222221 100 11111234999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|+..-. ...+....+.|++||.+++.-..
T Consensus 233 ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 987543 34566778889999999986544
No 282
>KOG2361|consensus
Probab=95.94 E-value=0.011 Score=50.22 Aligned_cols=46 Identities=59% Similarity=0.860 Sum_probs=44.2
Q ss_pred cCHHHHHHHHHhCCCceEEeeeeeeeeeecCCccceeeeeEeeEEe
Q psy11741 252 FTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSY 297 (352)
Q Consensus 252 ~~~~~~~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
++.+++..++.++||..++..++.++.+++.....++|.|+++.|+
T Consensus 216 F~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~ 261 (264)
T KOG2361|consen 216 FTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQ 261 (264)
T ss_pred ccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEee
Confidence 7899999999999999999999999999999999999999999886
No 283
>KOG2539|consensus
Probab=95.91 E-value=0.012 Score=54.64 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCC-CcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAP-ESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD~ 183 (352)
...+..++|+|.|.|.-...+........-.++.||.|..|+.......+.....-......+......+|.+. +.||+
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34466789999988865544443332123468999999999999988766511111111111111111334433 45999
Q ss_pred EEehhhhhcc-ChhHHHHHHHHHH-HhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAI-NPNKMQHVINQVY-KYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~-~~~~~~~~l~~~~-~~LkpgG~l~~~~~~ 221 (352)
|++.+.++++ +......+.+.+. +..++||.+++.+.+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999999988 3344444555444 556899998887654
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.78 E-value=0.011 Score=49.16 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~ 153 (352)
.+.++.|.+||+|.++.-+.-..+..-..|+|.|+++.+++.|++|.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 47789999999999876665544323458999999999999999986
No 285
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.71 E-value=0.034 Score=42.19 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 116 cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
||.|.++..+++.+...+..++.+|.++..++.++... +.++.+|..+...-....-.+.|.|++.. +.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------VEVIYGDATDPEVLERAGIEKADAVVILT-----DD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------SEEEES-TTSHHHHHHTTGGCESEEEEES-----SS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------cccccccchhhhHHhhcCccccCEEEEcc-----CC
Confidence 67778999998888655568999999999988887653 67889998864211111234677777642 22
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.....+....+-+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEE
Confidence 334445555667778887777753
No 286
>PHA01634 hypothetical protein
Probab=95.57 E-value=0.052 Score=41.26 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
+++|+|||.+-|..++.++.+ ....|+++++++...+..+++.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~---GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLR---GASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhc---CccEEEEeccCHHHHHHHHHHhhh
Confidence 889999999999999998885 344899999999999999887653
No 287
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.49 E-value=0.021 Score=48.81 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=45.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc---cccC-------CCceEEEEecCCCCCCCCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH---EEYK-------PDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~---~~~~-------~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
.+|||+-+|-|..+.-++. -|.+|++++-||.+....+.- +... ..+++++.+|..+. +..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~----~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS----LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHH----HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCHS
T ss_pred CEEEECCCcchHHHHHHHc----cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---HhhcC
Confidence 4899999999999998886 467999999999765544422 2111 14789999998863 33457
Q ss_pred CcceEEEehhhhh
Q psy11741 179 ESLDIVLLIFVLD 191 (352)
Q Consensus 179 ~~fD~V~~~~~l~ 191 (352)
.+||+|++-=++.
T Consensus 150 ~s~DVVY~DPMFp 162 (234)
T PF04445_consen 150 NSFDVVYFDPMFP 162 (234)
T ss_dssp S--SEEEE--S--
T ss_pred CCCCEEEECCCCC
Confidence 8999999854443
No 288
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.49 E-value=0.32 Score=43.21 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=49.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|+|+.||.|.++..+.. .|. .+.++|+++.+++..+.+... ....+|+.+.... .. ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~----~G~~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~-~~-~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK----AGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEK-DF-IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHH----cCCEEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchh-hc-CCCCCEEEeCC
Confidence 689999999999888876 334 468899999999999888642 2566777753211 11 35699999844
No 289
>KOG1099|consensus
Probab=95.42 E-value=0.015 Score=48.82 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC----CCe---EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN----DNV---FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPF 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~----~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~ 176 (352)
-.+++|++...|.++..|.+++-. .+. .+++||+-+- . .-+.|.-+++|++..... -.|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a---------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A---------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C---------ccCceEEeecccCCHhHHHHHHHHh
Confidence 458999999999999999887732 112 3999998542 1 124578889999865321 124
Q ss_pred CCCcceEEEehh-----hhhccC----hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 177 APESLDIVLLIF-----VLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 177 ~~~~fD~V~~~~-----~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
...+.|+|+|-. .+|.++ .+-+..+|.-...+|||||.|+--.+.
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 456899999944 355552 123445666677899999999875443
No 290
>KOG1562|consensus
Probab=95.42 E-value=0.044 Score=47.96 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
.+++||-||-|-|...+..+++- .--++.-+|+....++..++-... .++++....+|-..... ....++|
T Consensus 121 npkkvlVVgggDggvlrevikH~--~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~--~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK--SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE--DLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc--cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH--HhccCCc
Confidence 47899999999999988887752 344788999999988888776542 45788888888654321 2236899
Q ss_pred eEEEehhhhhccC--hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|+.-..=--.+ .--.......+.+.||+||+++...
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999743211111 1234567788899999999998864
No 291
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.37 E-value=0.036 Score=45.28 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=77.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC---CCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP---FAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~fD 182 (352)
+..|+|.|.--|.-++..|...-. ...+|+++|++-..+.-+... .+.|.|++++-.++....+ ...+.--
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 678999999999888777764421 347999999987665444332 3679999998776432111 1122224
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
+.+|..+-|+. +...+.|+-+..+|..|-++++.+.+..+
T Consensus 146 IfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 146 IFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 55555666776 78888899999999999999998765543
No 292
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.21 E-value=0.25 Score=40.21 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=74.4
Q ss_pred EcCCccccHHHHHhhcCCCCeEEEE--EeCCHHHHHHHH---hccccC-CCceE-EEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 114 IGCGVGNSVFPIVEHCKNDNVFVYG--CDFSENAVNILK---EHEEYK-PDRCH-AFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 114 ~GcG~G~~~~~l~~~~~~~~~~v~g--vD~s~~~l~~a~---~~~~~~-~~~v~-~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
||=|.=.++..|++... .+.++++ .|..+...+... .+.... ..++. ..-.|+++.........+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~-~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFG-SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcC-CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 45555556677777764 2445554 455444443332 222211 12222 3445777654444445788999998
Q ss_pred hhhhhc-----------cChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 187 IFVLDA-----------INPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 187 ~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
++--.- .+..-+..+++.+..+|+++|.+.+....... ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 653111 01234557788899999999999997433211 1111
Q ss_pred HHHHHHHhCCCceEEee
Q psy11741 256 EVKTMFESAGFVEKQNL 272 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~~ 272 (352)
.+..+.+++||..++..
T Consensus 135 ~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKV 151 (166)
T ss_pred cHHHHHHhcCCEEEEEe
Confidence 35577788999987764
No 293
>KOG4058|consensus
Probab=95.18 E-value=0.15 Score=39.87 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.++..+.+|+|+|.|++....++.. -..-+|+++++-.+..++-+.-. ......|..-|+-+. .+ +.|.
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g---~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~----dl--~dy~ 140 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG---LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV----DL--RDYR 140 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC---CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc----cc--cccc
Confidence 3446789999999999988887742 24679999999988888766433 335677777777542 22 2343
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.|+...+-..+ .+ +-.++..-|..+..++-.-+
T Consensus 141 ~vviFgaes~m--~d---Le~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 141 NVVIFGAESVM--PD---LEDKLRTELPANTRVVACRF 173 (199)
T ss_pred eEEEeehHHHH--hh---hHHHHHhhCcCCCeEEEEec
Confidence 33333222222 22 22334445566666665543
No 294
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.12 E-value=0.17 Score=43.86 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=63.1
Q ss_pred CCeEEEEcCCccccHHHHHhh---cCCCCeEEEEEeCCH--------------------------HHHHHHHhccccCC-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEH---CKNDNVFVYGCDFSE--------------------------NAVNILKEHEEYKP- 157 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~---~~~~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~- 157 (352)
++.|+|+||-.|..+..++.. +..++-++++.|.=+ ..++..++++...+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999866554332 222455777776411 24555666665432
Q ss_pred --CceEEEEecCCCCCCCCC-CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 158 --DRCHAFVCDVTSEDWNPP-FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 158 --~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.++.++.+.+.+ .+| .+..++-++.+-.-+ .+....+|+.++..|.|||++++.+++.
T Consensus 155 ~~~~v~~vkG~F~d---TLp~~p~~~IAll~lD~Dl----YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPD---TLPDAPIERIALLHLDCDL----YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHH---HCCC-TT--EEEEEE---S----HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchh---hhccCCCccEEEEEEeccc----hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 589999998865 232 123344333332211 1456788999999999999999998875
No 295
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.11 E-value=0.014 Score=43.05 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=26.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
....+|+|||+|.+.-.|.. .|..-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~----EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNS----EGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHh----CCCCcccccccc
Confidence 56799999999998877777 677789999743
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=95.07 E-value=0.034 Score=49.66 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
..++..|||.-||+|..+....+ .+-+.+|+|++++.++.|++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~----lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKA----SGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHH
Confidence 34589999999999998877666 56689999999999999999864
No 297
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.97 E-value=0.04 Score=47.18 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHh
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE 151 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~ 151 (352)
++..|||.-||+|..+....+ -+.+.+|+|+++...+.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~----l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE----LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH----TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH----cCCeEEEEeCCHHHHHHhcC
Confidence 488999999999998877776 66689999999999999864
No 298
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.87 E-value=0.047 Score=50.63 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=72.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--C-ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--D-RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||.=+|+|.=++..+.... ....|+.-|+|+.+++..++|.+.++ . .++....|+.... ......||+|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~-~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll---~~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA-GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL---YSRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S-SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH---CHSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcC-CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh---hhccccCCEE
Confidence 46899999999998888888752 33589999999999999999976543 2 4677788876421 1246789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
=.- +-..+..+|..+.+.++.||.|.++.
T Consensus 126 DlD------PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLD------PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeC------CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 542 12456788999999999999999964
No 299
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.86 E-value=0.084 Score=46.26 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC------CeEEEEEeCCHHHHHHHHhccccC-------CCceEEEEecCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND------NVFVYGCDFSENAVNILKEHEEYK-------PDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~ 174 (352)
+.+|+|+|+|+|.++..++..+... ..+++-||+|+.+.+.-++++... ..++.+ ..++.+ .
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~----~ 93 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEE----V 93 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGC----S
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhc----c
Confidence 4689999999999999998877422 358999999999988888876542 234444 223221 1
Q ss_pred CCCCCcceEEEehhhhhccC
Q psy11741 175 PFAPESLDIVLLIFVLDAIN 194 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~ 194 (352)
| ..-+|+++.++..++
T Consensus 94 p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 94 P----FPGFIIANELFDALP 109 (252)
T ss_dssp -----CCEEEEEESSGGGS-
T ss_pred c----CCEEEEEeeehhcCc
Confidence 1 346777777777663
No 300
>KOG0822|consensus
Probab=94.53 E-value=0.11 Score=49.22 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=76.8
Q ss_pred CCeEEEEcCCccccHHHHHhhc--CCCCeEEEEEeCCHHHHHHHHh-ccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--KNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
...|+-+|.|-|-+.....++. .....++++++.+|.++-..+. +......+|+.+..|++. .+.+..+.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~----w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK----WNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc----cCCchhhccch
Confidence 4568899999998776654433 1256789999999998877654 344456789999999995 33235789998
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++- .|..+ +.+--...|..+-+.|||+|+.+-..+.
T Consensus 444 VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 444 VSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred HHH-hhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 872 23333 2233346788889999999988866543
No 301
>KOG2671|consensus
Probab=94.50 E-value=0.063 Score=48.02 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHH-------hccccCC---CceEEEEecCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILK-------EHEEYKP---DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~-------~~~~~~~---~~v~~~~~d~~~~~~~~~ 175 (352)
.++.-|.|-=.|||.+....+. -|+.|+|.||+-.|+...+ .|++..+ .-+.++.+|.....+.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~----FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAH----FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred CCCCEEecCccccCceeeehhh----hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh--
Confidence 4588999999999999888887 6789999999998887432 2333222 3456788888865442
Q ss_pred CCCCcceEEEeh------------------------hhhhccCh-------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 176 FAPESLDIVLLI------------------------FVLDAINP-------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 176 ~~~~~fD~V~~~------------------------~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
....||.|+|. ..-.|.+. .-...+|.-.++.|.-||++++-.+
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 25689999990 01112211 1223455667788999999998644
No 302
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.1 Score=47.30 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||.=||+|.=++.++... +..+++.-|+||.+++.+++|...+ +.+......|+... +......||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~--~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l---m~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET--GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL---LHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc--CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH---HHhcCCCccEEec
Confidence 5689999999999888888865 4448999999999999999998765 45555555665432 1112367887733
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
. +-..+..++..+.+.++.||++.++-
T Consensus 128 ----D--PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 ----D--PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ----C--CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 1 12455677888888888999999853
No 303
>PRK13699 putative methylase; Provisional
Probab=94.33 E-value=0.072 Score=45.85 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
..++..|||.-||+|..+....+ .+.+.+|+|+++...+.|.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~----~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQ----SGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHH
Confidence 34588999999999998877766 566899999999999999888754
No 304
>KOG1501|consensus
Probab=94.32 E-value=0.071 Score=49.19 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC-CCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA-PESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~fD~V 184 (352)
...|||+|.|||.++...+.+. +-.|++++.-..|.+.|++-....+ .+|+++.---+ +.... .-..|++
T Consensus 67 kv~vLdigtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt----ev~vg~~~RadI~ 139 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST----EVKVGGSSRADIA 139 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc----eeeecCcchhhhh
Confidence 3468999999999988777754 3369999999999999998766543 55655543222 11111 1235655
Q ss_pred EehhhhhccChhHHHHHHHHHHHhc-CCCE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYL-KPGG 213 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG 213 (352)
+.-.+...+--+-....++.+++.| +||.
T Consensus 140 v~e~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 140 VREDFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence 5433322221222344555555544 4443
No 305
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.23 E-value=0.026 Score=44.79 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+++++-+|+..-..-. +|-.. ...+++.++.++--++.- + ..++ .+...|+... ...-.++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv-~aL~~--GA~~iltveyn~L~i~~~---~---~dr~ssi~p~df~~~---~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEV-MALQH--GAAKILTVEYNKLEIQEE---F---RDRLSSILPVDFAKN---WQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhH-HHHHc--CCceEEEEeecccccCcc---c---ccccccccHHHHHHH---HHHhhccchhhhe
Confidence 5677888887543332 33222 455788888765211110 0 0111 1222333221 1112578999999
Q ss_pred hhhhhccC---------hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAIN---------PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++|.. +.--...+.++.++|||||.|++..+.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 99998872 223346778889999999999998654
No 306
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.09 E-value=0.1 Score=44.03 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCC-CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDW-NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~~~fD 182 (352)
+..++||||.|.-.+=-.+-. ..-+++.+|.|+++..++.|+.....++ ..++.....=..-.+ ..--..+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~--~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGV--HEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccc--eeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 467889999887654322222 2268899999999999999988765432 234444321111000 1111257899
Q ss_pred EEEehhhhhc
Q psy11741 183 IVLLIFVLDA 192 (352)
Q Consensus 183 ~V~~~~~l~~ 192 (352)
+++|+--+|.
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999776653
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.88 E-value=0.46 Score=45.86 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-------CCC-
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-------NPP- 175 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------~~~- 175 (352)
..++.+|+=+|||.=. .+...++. .|+.|+++|.++.-++.+++.- .++...|..+... .+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~---lGA~V~a~D~~~~rle~aeslG------A~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS---LGAIVRAFDTRPEVAEQVESMG------AEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC------CeEEEeccccccccccchhhhcch
Confidence 3458999999999744 55555655 5668999999999999888742 2222222211000 000
Q ss_pred ---------CC--CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 176 ---------FA--PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 176 ---------~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+. -+.+|+|+.......- ..+..+.+++.+.+||||+++..-.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 1468999876543221 2233445899999999999887543
No 308
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.87 E-value=0.15 Score=47.79 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEec-CCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCD-VTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~fD~ 183 (352)
++.+||.+|||+ |..+..+++.. +. +++++|.++..++.+++.... ..+.....+ ........ .....+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~---g~~~vi~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~~l~~~-~~~~~~D~ 257 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLL---GAERVIAIDRVPERLEMARSHLGA--ETINFEEVDDVVEALREL-TGGRGPDV 257 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHcCCc--EEEcCCcchHHHHHHHHH-cCCCCCCE
Confidence 477899999988 88888888874 43 699999999999998875211 101111111 10000001 11336898
Q ss_pred EEehhhhh-------c----c--ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLD-------A----I--NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~-------~----~--~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+-...-. + . +..+....+..+.+.|+|+|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 87742111 0 0 11233567888999999999988753
No 309
>KOG1253|consensus
Probab=93.49 E-value=0.036 Score=51.93 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||.=|++|.-++..+.... ...+|++-|.++..++..+++.+..+ ..++....|+.......+.....||+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~-~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELP-GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhc-chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3477999999999999999999874 23479999999999999998877542 33445556655332222333578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|-.- +......+|..+.+.++.||.|.++.
T Consensus 187 IDLD------PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLD------PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EecC------CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 8542 22445678888889999999999964
No 310
>PRK13699 putative methylase; Provisional
Probab=93.48 E-value=0.24 Score=42.65 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCEEEEEE
Q psy11741 198 MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 198 ~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....+.+++++|||||.+++.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 457889999999999988763
No 311
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.33 E-value=0.47 Score=43.07 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+++|+-||.|.+...+.. .|. .+.++|+++.+.+.-+.+.. ....+|+.+.... .++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~----ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~-~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ----AGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPS-DLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHH----TTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHH-HHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHh----cCcEEEEEeecCHHHHHhhhhccc------ccccccccccccc-cccc-cceEEEecc
Confidence 689999999999998888 454 56899999999999888864 6778888854211 2333 599999844
Q ss_pred hhhccC----------h-hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHH
Q psy11741 189 VLDAIN----------P-NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 189 ~l~~~~----------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
-..-++ + ..+..-+-++.+.++|. ++++.. .+. ... . . .....+.+
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~EN-V~~-l~~----------~-----~-----~~~~~~~i 126 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK-YFLLEN-VPG-LLS----------S-----K-----NGEVFKEI 126 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S-EEEEEE-EGG-GGT----------G-----G-----GHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccce-EEEecc-cce-eec----------c-----c-----cccccccc
Confidence 322221 0 11222333444556886 344432 110 000 0 0 00235678
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
...|++.||.+....+
T Consensus 127 ~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 127 LEELEELGYNVQWRVL 142 (335)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred cccccccceeehhccc
Confidence 8889999998775544
No 312
>KOG2352|consensus
Probab=92.83 E-value=0.099 Score=49.12 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCC---CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNP---PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~---~~~~~~fD~ 183 (352)
+..+|-+|-|+|.+...+...+ +...++++++.|.|++.|++.+.... .+......|-.+..... ...+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~--p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL--PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeec--CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 5678999999999988887766 77899999999999999999875421 22333333322211001 113567999
Q ss_pred EEehh---hhhcc--ChhH--HHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLLIF---VLDAI--NPNK--MQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~~~---~l~~~--~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
++.-- -.|-+ ++.. ...+|..+...|.|.|.+++....+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 88611 02323 2222 23578889999999999998765443
No 313
>KOG0024|consensus
Probab=92.80 E-value=0.2 Score=44.64 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-----cCCCCCCCCCCC
Q psy11741 104 DTCSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-----DVTSEDWNPPFA 177 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~ 177 (352)
+-..+.+||=+|+|+ |..+...|+.+ ...+|+.+|+++.-++.|++. ... .+..... ++.+. ..-.+.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~--GA~~VVi~d~~~~Rle~Ak~~-Ga~--~~~~~~~~~~~~~~~~~-v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM--GASDVVITDLVANRLELAKKF-GAT--VTDPSSHKSSPQELAEL-VEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc--CCCcEEEeecCHHHHHHHHHh-CCe--EEeeccccccHHHHHHH-HHhhcc
Confidence 445688999999997 55556666765 566899999999999999983 211 0111110 00000 001122
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
...+|+.+....+ ...++.....+++||.+++..++..
T Consensus 240 ~~~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 3458888765443 3345556778999999888776543
No 314
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.53 E-value=0.27 Score=45.60 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 158 ~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.+++++.+++.+... ..+++++|.++......+++++.....++++.+.++|||++++-....
T Consensus 275 drv~i~t~si~~~L~--~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR--RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHH--hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 678899988876322 235799999999999999999999999999999999999999976543
No 315
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=92.51 E-value=0.14 Score=42.39 Aligned_cols=94 Identities=13% Similarity=0.342 Sum_probs=58.3
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCC-----CCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWN-----PPFAPE 179 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-----~~~~~~ 179 (352)
..|+.+|||--.....+.... ++..++-+|... +++.-++.....+ .+.+++.+|+.+..+. ..+..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~--~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPA--GGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTT--TTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred cEEEEcCCCCCchHHHhhccc--cceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 389999999987777776642 477888888844 5554444443321 2356789998864321 123345
Q ss_pred cceEEEehhhhhccChhHHHHHHHHH
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
.--++++-.++.+++++....+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 56678888889999988888888776
No 316
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.46 E-value=0.5 Score=43.59 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-cCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-DVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|+=+|||+ |.++..+++.. ...+|+++|.++.-++.|++..... .+..... +......... ....+|+++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~~~~~~t-~g~g~D~vi 243 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLL--GASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGAEILELT-GGRGADVVI 243 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHHHHHHHh-CCCCCCEEE
Confidence 44899999997 44556666654 5568999999999999998843211 0000001 1000000010 123699988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
-... ....+..+.++++|||.+.+.-..
T Consensus 244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 6443 234788899999999988876543
No 317
>KOG1098|consensus
Probab=92.13 E-value=0.1 Score=50.23 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC----CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP----FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~fD~ 183 (352)
+..|||+||.+|.++.-.++.++ .+.-|+|+|+-|- ...+++...+.|++......+ ...-..|+
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~p-v~slivGvDl~pi----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~adv 113 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMP-VGSLIVGVDLVPI----------KPIPNCDTLVEDITTDECRSKLRKILKTWKADV 113 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCC-CCceEEEeeeeec----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 67899999999999988888776 6778999999763 122455566666654321111 01123477
Q ss_pred EEehhh----hhcc-----ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFV----LDAI-----NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~----l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-.+ ..+. ...-....|+-....|+.||.++--.+
T Consensus 114 VLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf 159 (780)
T KOG1098|consen 114 VLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF 159 (780)
T ss_pred EeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence 775221 1111 011223556667788999999665433
No 318
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.01 E-value=1.4 Score=33.04 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++|+++|-|-=. ..++.+...|..++++|+.+. +. +..+.++..|++++...+ -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~---~VA~~L~e~g~dv~atDI~~~-------~a---~~g~~~v~DDitnP~~~i---Y~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFL---DVAKRLAERGFDVLATDINEK-------TA---PEGLRFVVDDITNPNISI---YEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHH---HHHHHHHHcCCcEEEEecccc-------cC---cccceEEEccCCCccHHH---hhCccceeec
Confidence 5599999987643 233333337889999999886 22 245889999999754222 2356888763
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
- ++.++...+-.+.+.++- .+++.
T Consensus 78 R-----pppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 78 R-----PPPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred C-----CCHHHHHHHHHHHHhhCC--CEEEE
Confidence 2 456777777777776554 35554
No 319
>KOG1209|consensus
Probab=91.81 E-value=1.2 Score=37.40 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH-HHHHHHhccccCCCceEEEEecCCCCCC-------CCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN-AVNILKEHEEYKPDRCHAFVCDVTSEDW-------NPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~~ 179 (352)
.+.||=.||.+|.++..+++.+...|+.|+++--+-+ |-+.+.+ + .+.....|+.++.. -..++++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~-----gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-F-----GLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-h-----CCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 6789999999999999999988778999998865543 3333322 1 25566777765431 1123578
Q ss_pred cceEEEehh
Q psy11741 180 SLDIVLLIF 188 (352)
Q Consensus 180 ~fD~V~~~~ 188 (352)
+.|+.+.+.
T Consensus 81 kld~L~NNA 89 (289)
T KOG1209|consen 81 KLDLLYNNA 89 (289)
T ss_pred ceEEEEcCC
Confidence 888888643
No 320
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.33 E-value=0.081 Score=40.74 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcccc
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQ 237 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
.+++..+|+.+ .++.-...||+|+....--.-+++. -..+++.++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~---~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------------ 90 (124)
T PF05430_consen 32 TLTLWFGDARE---MLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS------------------ 90 (124)
T ss_dssp EEEEEES-HHH---HHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-------------------
T ss_pred EEEEEEcHHHH---HHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------------
Confidence 45666777753 1221236789988754322222222 2468999999999999876631
Q ss_pred CceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 238 DNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....++..|.++||.+...
T Consensus 91 ---------------~a~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 91 ---------------SAGAVRRALQQAGFEVEKV 109 (124)
T ss_dssp ----------------BHHHHHHHHHCTEEEEEE
T ss_pred ---------------chHHHHHHHHHcCCEEEEc
Confidence 2345888999999998654
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.03 E-value=1.3 Score=40.20 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---CCCCCCcce
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN---PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~~fD 182 (352)
++.+||..||| .|..+..+++. .+.+|++++.++...+.+++.. +..+..+ .+.... .....+.+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~---~G~~V~~~~~s~~~~~~~~~~g------~~~~~~~-~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKA---MGAAVIAVDIKEEKLELAKELG------ADEVLNS-LDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHhC------CCEEEcC-CCcCHHHHHHHhcCCCce
Confidence 36788888876 36777777776 5678999999999888886531 1111111 110000 012345799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+..... ...+..+.+.|+++|.++...
T Consensus 235 ~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGT--------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEC
Confidence 88753211 235777889999999988753
No 322
>KOG2651|consensus
Probab=90.90 E-value=0.39 Score=43.72 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~ 152 (352)
+-..|+|+|.|.|.++..++-. .+..|.+||-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHH
Confidence 3568999999999999998875 678999999998887777643
No 323
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.79 E-value=0.11 Score=40.73 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..-|||+|=|.|+.--.|.+.+ |+-.|+++|-.-. .+....++.-.++.+|+.+....++.-..+.-++.+-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~--p~R~I~vfDR~l~------~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD 100 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF--PDRRIYVFDRALA------CHPSSTPPEEDLILGDIRETLPALARFGAGAALAHAD 100 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH----SS-EEEEESS--------S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE-
T ss_pred CCceEEeccCCCccHHHHHHhC--CCCeEEEEeeecc------cCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEee
Confidence 5679999999999999999988 8889999986332 1222223445677787764210011112333444443
Q ss_pred hhhhccCh--hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINP--NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
...++-.. .....+-.-+..+|.|||+++-.
T Consensus 101 ~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 101 IGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp ---S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred cCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 33222110 11112223466889999998875
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.45 E-value=0.82 Score=45.49 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=67.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
.+|+= ||.|+++..+++.+...+..++.+|.+++.++.+++. ....+.+|+++...-....-.+.|++++..
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 35555 5566688888777655788999999999999988753 256889999864311111234678777642
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ 227 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 227 (352)
+.++....+-...+.+.|...++....++.+...
T Consensus 473 -----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~ 506 (601)
T PRK03659 473 -----NEPEDTMKIVELCQQHFPHLHILARARGRVEAHE 506 (601)
T ss_pred -----CCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 2223333344445567888888887665544333
No 325
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.20 E-value=1.5 Score=43.20 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=59.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
.+|+=+|| |..+..+++.+...+..++.+|.+++.++.+++. ....+.+|..+...-....-++.|.+++.-
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 45555555 5578888887765778999999999988888753 367889999864311111234678665431
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
. ++++-..+... .+...|...++..
T Consensus 490 ~----~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 490 P----NGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred C----ChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 1 11122223333 3445677666664
No 326
>PTZ00357 methyltransferase; Provisional
Probab=90.16 E-value=1.8 Score=42.84 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=61.1
Q ss_pred CeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhc---cccC-------CCceEEEEecCCCCCCC---
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEH---EEYK-------PDRCHAFVCDVTSEDWN--- 173 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~---~~~~-------~~~v~~~~~d~~~~~~~--- 173 (352)
..|+-+|+|-|-+.....++.. ....+|++|+.++..+.....+ .... +..|+++..|++.-...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999987666555432 1356899999996643333222 1122 45699999999864211
Q ss_pred ----CCCCCCcceEEEehhhhhccC-hhHHHHHHHHHHHhcCC----CEE
Q psy11741 174 ----PPFAPESLDIVLLIFVLDAIN-PNKMQHVINQVYKYLKP----GGM 214 (352)
Q Consensus 174 ----~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~Lkp----gG~ 214 (352)
+|..-+++|+|++- .|..+. .+--...|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 11112479999982 222221 12223455555666654 665
No 327
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.60 E-value=4 Score=37.23 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=78.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+++|+-||.|.+..-+.. .|. -+.++|+++.+++.-+.+... ......|+..... ..+....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~----agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~-~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE----AGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDG-EALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHh----cCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcCh-hhccccCCCEEEe
Confidence 46899999999999988877 444 457899999999998888653 3455666654321 1111117899998
Q ss_pred hhhhhccCh-------hH----HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 187 IFVLDAINP-------NK----MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 187 ~~~l~~~~~-------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
..-.+.++. ++ +..-+.++...++| -.+++ +..+. + +.. ..-..+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~-ENV~g----l-------~~~-----------~~~~~~ 129 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVL-ENVKG----L-------LSS-----------KGQTFD 129 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEE-ecCch----H-------Hhc-----------CchHHH
Confidence 543333311 12 22334455566778 33444 32211 0 000 113578
Q ss_pred HHHHHHHhCCCce
Q psy11741 256 EVKTMFESAGFVE 268 (352)
Q Consensus 256 ~~~~ll~~~Gf~~ 268 (352)
.+...|++.||.+
T Consensus 130 ~i~~~L~~~GY~~ 142 (328)
T COG0270 130 EIKKELEELGYGV 142 (328)
T ss_pred HHHHHHHHcCCcc
Confidence 8999999999973
No 328
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.45 E-value=2.2 Score=38.76 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=46.9
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEE-EEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFV-YGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
|+|+-||.|.++.-+.. .|.++ .++|+++.+.+.-+.+... ....+|+.+.... .+ ..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~----aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~-~~--~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ----AGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPS-DI--PDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHH----cCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhh-hC--CCcCEEEecC
Confidence 58999999999988876 55665 5799999999998887632 3456777653210 11 2589998743
No 329
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.38 E-value=1.1 Score=41.30 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEE-EEecCCCCCC---CCCCCCCcceE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHA-FVCDVTSEDW---NPPFAPESLDI 183 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~-~~~d~~~~~~---~~~~~~~~fD~ 183 (352)
.+|-=+ |-|..++++|..+...|.+|+|+|+++..++..++-.... .+...- +..-+....+ ..+..-...|+
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 445445 4566777777776658899999999999888776432110 000000 0000000000 00101124566
Q ss_pred EEehh-h-hh---ccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIF-V-LD---AINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~-~-l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++..- + +. .-+........+.+.+.|++|-.+++..-
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 54411 1 11 11234567888999999999988777543
No 330
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.28 E-value=1.3 Score=38.20 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH-HHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE-NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~ 180 (352)
++++|-.|+. |.++..+++.+...+.+|++++.+. ...+.........+.++.++.+|+.+...-... .-+.
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 6788888864 4566666666544788898887653 223332222222234577888998753210000 0135
Q ss_pred ceEEEehhhhhcc-----------ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAI-----------NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+|+.+...... +..-...+++.+.+.++.+|.+++.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 7887765432111 1112445677777777666666654
No 331
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.93 E-value=8 Score=37.62 Aligned_cols=110 Identities=10% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
++..|.|..||+|.+......... .....++|.+....+...|+.+..-. +.......+|-.... .......|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~--d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK--EWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc--cccccccC
Confidence 357899999999998876544321 12356899999999999998764221 112222233322110 00123457
Q ss_pred eEEEehhh---------------------hhccC--hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFV---------------------LDAIN--PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~---------------------l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|.|+++-- .|.++ ...-..++..+..+|++||...+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 77665221 11111 123346777788899999975554
No 332
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.90 E-value=3 Score=37.96 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||=.|+|. |..+..+++. .|.++++++.++.-++.+++.-.. .+ .|..+ . ..+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~---~G~~vi~~~~~~~~~~~a~~~Ga~------~v-i~~~~----~--~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALA---QGATVHVMTRGAAARRLALALGAA------SA-GGAYD----T--PPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHHhCCc------ee-ccccc----c--CcccceEE
Confidence 3478999999753 3344555555 567899999999888888764221 11 11111 0 12357876
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+..... ...+....+.|++||.+++.-
T Consensus 228 i~~~~~--------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA--------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc--------HHHHHHHHHhhCCCcEEEEEe
Confidence 542211 135777888999999988754
No 333
>KOG2918|consensus
Probab=88.62 E-value=13 Score=33.28 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=91.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----------------------CceEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----------------------DRCHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------------~~v~~~~~ 165 (352)
...|+.+|||.-.....|..........++=||.++.....+....+... ++-...-+
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~ 167 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGC 167 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeecc
Confidence 67899999999998888887653356678889998876666622211100 11112222
Q ss_pred cCCCCCC------CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCc
Q psy11741 166 DVTSEDW------NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDN 239 (352)
Q Consensus 166 d~~~~~~------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
|+.+... .-....+-.-++++-.++.+++++.-..+++.+.+....++.+....+++.+.-.-.+ ..+
T Consensus 168 DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM------~~n 241 (335)
T KOG2918|consen 168 DLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVM------LAN 241 (335)
T ss_pred chhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHH------HHH
Confidence 2221100 0001112223444455778888888888999998887777777666555443211111 011
Q ss_pred eeec--CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 240 FYAR--GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 240 ~~~~--~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+-.+ .-.+...+.+.+..+.-+.++||+.+..
T Consensus 242 lk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a 275 (335)
T KOG2918|consen 242 LKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIA 275 (335)
T ss_pred HHhcCCCCchhhhcccHHHHHHHHHhcCCceeeh
Confidence 1111 1123335678999999999999998765
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.54 E-value=1.1 Score=38.90 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC---CCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP---PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~fD 182 (352)
++.+||-.|+|+ |..+..+++. .+.++++++.++...+.++.... . ..+ +........ ....+.+|
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~~g~---~--~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA---AGARVIVTDRSDEKLELAKELGA---D--HVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHHhCC---c--eec--cCCcCCHHHHHHHhcCCCCC
Confidence 478999999986 5566666665 56799999999888777754311 0 111 111100000 01235699
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+....- . ..+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~~-----~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGG-----P---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCC-----H---HHHHHHHHhcccCCEEEEEc
Confidence 99864221 1 34666778889999988753
No 335
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.89 E-value=2.1 Score=39.39 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeC---CHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDF---SENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+||=+|||. |.++..+++. .+.++++++. ++.-++.+++.-. ..+ +..+.........+.+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~---~G~~vi~~~~~~~~~~~~~~~~~~Ga------~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRL---RGFEVYVLNRRDPPDPKADIVEELGA------TYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHcCC------EEe--cCCccchhhhhhcCCCC
Confidence 477899888864 4455666665 5668999986 6777777765321 111 11111000000124689
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+-... . ...+....++|++||.+++.-
T Consensus 241 ~vid~~g-----~---~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATG-----V---PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcC-----C---HHHHHHHHHHccCCcEEEEEe
Confidence 8876432 1 125677888999999887654
No 336
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=87.84 E-value=9.8 Score=35.45 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhc-----CCCCeEEEEEeC----CHHHHHHHHhcccc----CCCceEEEEecCCCCC--
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHC-----KNDNVFVYGCDF----SENAVNILKEHEEY----KPDRCHAFVCDVTSED-- 171 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~-----~~~~~~v~gvD~----s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~-- 171 (352)
+..+|+|+|.|.|.-=..|.+.+ +.|..++|||+. +...++.+.++... .+...+|...-.....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 46789999999996333333333 225679999999 77777777666432 2333444442111110
Q ss_pred --CCCCCCCCcceEEEehhhhhccCh-----hH-HHHHHHHHHHhcCCCEEEEEE
Q psy11741 172 --WNPPFAPESLDIVLLIFVLDAINP-----NK-MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 172 --~~~~~~~~~fD~V~~~~~l~~~~~-----~~-~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..+...++..=+|-|.+.+|++.. .+ ...+|+. .+.|+|.-++++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 012223344444555667888831 12 3345554 4568999666554
No 337
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.77 E-value=3.9 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC------CCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP------PFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~~f 181 (352)
+++||=.|++ |.++..+++.+...|.+|++++-++..++.+.+..... .++.++.+|+.+..... ...-+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 6789999986 55666666665447889999999887665553333222 35788889887532000 0001346
Q ss_pred eEEEehhhhhcc-C---h-----------hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAI-N---P-----------NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~-~---~-----------~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|.++........ . . .-...+++.+...++++|.+++..
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 777764432110 0 0 112234555666677788776643
No 338
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.75 E-value=3.6 Score=36.09 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC-CCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF-APESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~f 181 (352)
+...++.|+-+| -.-..+++++. ....-++..+|+++..+....+.++..+ .+++....|+.+ ++|. -.+.|
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aL--t~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~---plpe~~~~kF 222 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALAL--TGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN---PLPEDLKRKF 222 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHh--cCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc---cChHHHHhhC
Confidence 344578899998 33334444433 2255589999999999999988877655 459999999986 3331 14689
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCC---EEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPG---GMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 219 (352)
|+++..- -+.+ ..+..++.+=...||.- |++.++.
T Consensus 223 DvfiTDP-peTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 223 DVFITDP-PETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CeeecCc-hhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 9887521 1111 33445555555667654 7777753
No 339
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.73 E-value=2.5 Score=36.98 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=63.1
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|+++ +.++..+++.+...|.+|+.++.+....+.+.+..... ..+.++.+|+.+...- ....-+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-DAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-ccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 67899999887 36777777766557889988888764433222222111 2245677888753210 0001256
Q ss_pred ceEEEehhhhhc----------cChhHHHHH-----------HHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDA----------INPNKMQHV-----------INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+..+.. .+.+++... .+.+...++.+|.++..
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 899887654321 223334333 35566667777776653
No 340
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.18 E-value=1.8 Score=43.19 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=64.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+||| +++..+++.+...+..++.+|.+++.++.+++. ....+.+|.++...-....-++.|++++.
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 3567776665 466666666554678999999999999988653 25688999986431111123467877764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
. +.++....+-...+.+.|.-.++....+..
T Consensus 472 ~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 472 I-----DDPQTSLQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred e-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 2 223333334445555678777776654443
No 341
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.06 E-value=4.7 Score=34.64 Aligned_cols=81 Identities=20% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...+.++++++.++..+....+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 677886665 5667777777665478899999988876665544433333568888999875321000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (250)
T PRK12939 86 DGLVNNAG 93 (250)
T ss_pred CEEEECCC
Confidence 88887543
No 342
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.85 E-value=2.8 Score=38.39 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||=+|||.=. .+..+++... .+.+|+++|.++.-++.+++ +. . . ....+.. ....+|+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~-~~---~-~-~~~~~~~--------~~~g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF-AD---E-T-YLIDDIP--------EDLAVDHAF 227 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh-cC---c-e-eehhhhh--------hccCCcEEE
Confidence 47899999985422 3344555321 34589999999988888764 21 1 1 1111111 112488887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-... . ......+....++|++||.+++.-
T Consensus 228 D~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 4321 0 112346777888999999988754
No 343
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.82 E-value=0.78 Score=35.13 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=47.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+|+|-|.=......++. .|..|+++|+.+. ++ ...+.++..|+.++...+ -...|+|++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~---~G~dV~~tDi~~~-------~a---~~g~~~v~DDif~P~l~i---Y~~a~lIYSi 77 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE---RGFDVIATDINPR-------KA---PEGVNFVVDDIFNPNLEI---YEGADLIYSI 77 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH---HS-EEEEE-SS-S--------------STTEE---SSS--HHH---HTTEEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHH---cCCcEEEEECccc-------cc---ccCcceeeecccCCCHHH---hcCCcEEEEe
Confidence 459999999886533333332 6789999999986 11 134789999998643111 1357888874
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
. ++.++...+.++++.+ |.-+++...+
T Consensus 78 R-----PP~El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 78 R-----PPPELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp S-------TTSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred C-----CChHHhHHHHHHHHHh--CCCEEEECCC
Confidence 3 3456666666666644 4557776443
No 344
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.79 E-value=3.5 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=.|||. |..+..+++. .+. +|+++|.++.-++.+++.-... -+.....++. ......+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~---~G~~~Vi~~~~~~~~~~~a~~lGa~~--vi~~~~~~~~----~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKT---LGAAEIVCADVSPRSLSLAREMGADK--LVNPQNDDLD----HYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHcCCcE--EecCCcccHH----HHhccCCCCCEE
Confidence 377888888742 3344555554 455 6899999999999887642110 0000011111 111112358988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+-... . ...+..+.++|++||.+++..
T Consensus 240 id~~G-----~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSG-----H---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 75322 1 235666778899999988754
No 345
>KOG2078|consensus
Probab=86.59 E-value=0.58 Score=43.30 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTS 169 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~ 169 (352)
.++..|.|+-||.|-++.+++. .+..|++-|.++++++..+.++..+ +.++..+.+|+..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k----K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK----KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CCcchhhhhhcCcCccccchhh----cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4578899999999999999998 7789999999999999999987643 2347777777654
No 346
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=86.58 E-value=9.1 Score=30.94 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=61.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
..+|+-|||=+-...+. + ...++.+++..|++... ...+.+ .|+.-|...+. .++ .-.++||+|++
T Consensus 26 ~~~iaclstPsl~~~l~--~-~~~~~~~~~Lle~D~RF--------~~~~~~-~F~fyD~~~p~-~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALK--K-ESKPRIQSFLLEYDRRF--------EQFGGD-EFVFYDYNEPE-ELPEELKGKFDVVVI 92 (162)
T ss_pred CCEEEEEeCcHHHHHHH--h-hcCCCccEEEEeecchH--------HhcCCc-ceEECCCCChh-hhhhhcCCCceEEEE
Confidence 67999999977443322 2 11267789999998743 222333 56777776543 222 11579999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-=-+ ++.+-+.+....+.-++++++.+++.+
T Consensus 93 DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 93 DPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4332 444555667777777779988888864
No 347
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=86.39 E-value=5.6 Score=42.17 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+..+||+|.|.=.=.+.+.. +..-|+.+|.-|..- ..........|++.|.....+. ....+|.+.|.
T Consensus 823 ~~~~lDLGTGPE~RiLsliP----~~~pvtmvD~RP~ae-----~m~~w~t~T~y~~~DYl~~~~~---~~~~~D~vtai 890 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIP----PDTPVTMVDTRPFAE-----PMNCWNTQTQYIQADYLSDAWW---NGTPFDAVTAI 890 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-----TTSEEEEEESS--SS-----SCCCCSTTEEEEES-TTSCCGG---CC---SEEEEC
T ss_pred cceEEEccCCccceeeeccC----CCCceEEEecCCccc-----ccchhhhcceeeeeccccceeE---ecCCCCEEEEE
Confidence 67899999988655555554 778999999977421 1111224578999999875542 24679999998
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCE--EEEEEeCCCCchhh-HhhhcCccccCcee-ecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGG--MVLFRDYGRYDLVQ-LRFKKGRCLQDNFY-ARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 260 (352)
++|... ..-++...++.+.+.+++.| .+++....+-.... .+-..........| ....+....+.+.+++.++
T Consensus 891 lSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl~~~~~v~~~LeId~~~~~Y~F~~~~R~EPY~~~~~l~~~ 970 (1289)
T PF06016_consen 891 LSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLNCPLDSSRSVRGLLEIDTTNKTYVFPTLGRVEPYIDPDDLEQA 970 (1289)
T ss_dssp TCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B--SSSS--BTTTEEEETTTTEEEETTTTEEEEB--HHHHHHH
T ss_pred eeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEecCCCCCCCCCCceEEEeccccEEEcCCCCcCCCCCCHHHHHHH
Confidence 777544 33477888999988888776 46665332221110 00000001111222 3344566677888888888
Q ss_pred HHhC
Q psy11741 261 FESA 264 (352)
Q Consensus 261 l~~~ 264 (352)
+++.
T Consensus 971 i~~~ 974 (1289)
T PF06016_consen 971 IRAH 974 (1289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 348
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.34 E-value=2.8 Score=36.62 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++ |.++..+++.+...|.+|+.+|.++..++...+.. +.++.++.+|+.+...-.. + .-+..
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5678888754 45666666666447889999999876554443322 3457888999986421000 0 01467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 82 d~lv~~ag 89 (261)
T PRK08265 82 DILVNLAC 89 (261)
T ss_pred CEEEECCC
Confidence 88887543
No 349
>PRK08324 short chain dehydrogenase; Validated
Probab=86.34 E-value=2.1 Score=43.32 Aligned_cols=110 Identities=23% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++||=.|++ |.++..+++.+...|.+|+++|.++..++.+....... .++.++.+|+.+...-.. + ..+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45788887764 44556666655447889999999988776655443222 357888899875321000 0 1246
Q ss_pred ceEEEehhhhhcc------ChhH-----------HHHHHHHHHHhcCC---CEEEEEE
Q psy11741 181 LDIVLLIFVLDAI------NPNK-----------MQHVINQVYKYLKP---GGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~------~~~~-----------~~~~l~~~~~~Lkp---gG~l~~~ 218 (352)
+|+|+.+...... +.++ ...+++.+.+.+++ ||.+++.
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8998876543211 1111 23456666777765 5776664
No 350
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.04 E-value=3.1 Score=37.87 Aligned_cols=94 Identities=15% Similarity=0.282 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-CCCCCCCcceE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-NPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~fD~ 183 (352)
++.+||-.|||. |..+..+++. .|. ++++++.++...+.+++... . .++ |...... ......+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~---~G~~~v~~~~~s~~~~~~~~~~g~---~--~vi--~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARR---AGAAEIVATDLADAPLAVARAMGA---D--ETV--NLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHHcCC---C--EEE--cCCchhhhhhhccCCCccE
Confidence 478888888876 6666667775 565 78999999988887655321 0 111 1111000 11111235899
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+..... ...++.+.+.|+++|.++..
T Consensus 235 vld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 8864221 12466778899999998864
No 351
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.01 E-value=2.2 Score=41.22 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCC-----------C
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED-----------W 172 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-----------~ 172 (352)
..++.+||=+|||.=. .+..+++. .|..|+++|.++.-++.++..- ..++..|..+.. .
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~---lGA~V~v~d~~~~rle~a~~lG------a~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANS---LGAIVRAFDTRPEVKEQVQSMG------AEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC------CeEEeccccccccccccceeecCH
Confidence 3457899999998753 33444444 5678999999999888887631 223333321100 0
Q ss_pred C--------CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 173 N--------PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 173 ~--------~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+ ++..-..+|+|+....+..- ..+.-+.+++.+.+|||++++-
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEEE
Confidence 0 11012469999876544332 2334567888999999988663
No 352
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.88 E-value=3.8 Score=36.60 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH-HHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN-AVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.|++. .++..+++.+...|.+|+.++.++. .++.........+.++.++.+|+.+...-.. + .-+.
T Consensus 46 ~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 46 GKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67888888654 4566666655447888988887642 2333222222234567788999875321000 0 0135
Q ss_pred ceEEEehhhhhc-------cChh-----------HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDA-------INPN-----------KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~-------~~~~-----------~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+.+..... .+.+ -...+++.+.+.++++|.+++.
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 788876543211 1111 2234455566666777776664
No 353
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.63 E-value=1.4 Score=35.67 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=66.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|-=||+ |..+..+++.+...+..|++.|.++...+...+.. +. ...+..+ + -...|+|++.-.
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g------~~-~~~s~~e----~---~~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG------AE-VADSPAE----A---AEQADVVILCVP 66 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT------EE-EESSHHH----H---HHHBSEEEE-SS
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh------hh-hhhhhhh----H---hhcccceEeecc
Confidence 3444666 45677777766547889999999998777665541 11 1122211 0 134588876421
Q ss_pred hhccChhHHHHHHHH--HHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 190 LDAINPNKMQHVINQ--VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 190 l~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
+.+....++.. +...|++|.+++-..-.. .-+..++.+.+++.|..
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~----------------------------p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTIS----------------------------PETSRELAERLAAKGVR 114 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS------------------------------HHHHHHHHHHHHHTTEE
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcc----------------------------hhhhhhhhhhhhhccce
Confidence 34667788888 888888886665432111 12345677778888876
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
.++.-
T Consensus 115 ~vdap 119 (163)
T PF03446_consen 115 YVDAP 119 (163)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66543
No 354
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.57 E-value=6.9 Score=33.96 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
.++.+|-.|.++ +.++..+++.+...|.+|+.++.+....+.+++.. ...+.++.+|+.+...- ....-+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 367889888874 56777777777558889998887654333333221 23567888998753210 000125
Q ss_pred cceEEEehhhh
Q psy11741 180 SLDIVLLIFVL 190 (352)
Q Consensus 180 ~fD~V~~~~~l 190 (352)
.+|+++.+..+
T Consensus 83 ~iD~lv~nAg~ 93 (252)
T PRK06079 83 KIDGIVHAIAY 93 (252)
T ss_pred CCCEEEEcccc
Confidence 68998876543
No 355
>PRK11524 putative methyltransferase; Provisional
Probab=85.20 E-value=0.76 Score=41.01 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred eEEEEecCCCCCCCCCCCCCcceEEEeh--hhh--h------ccCh----hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 160 CHAFVCDVTSEDWNPPFAPESLDIVLLI--FVL--D------AINP----NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 160 v~~~~~d~~~~~~~~~~~~~~fD~V~~~--~~l--~------~~~~----~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..++++|+.+... .+++++||+|++. +.+ . .... +-....+.++.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567777765321 2346788888882 211 0 0000 22357889999999999999985
No 356
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.10 E-value=20 Score=34.39 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=41.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
..+++|+-||.|.+...+-.. ..-.|.++|+++.+.+.-+.+.... +.......|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a---G~~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI---GGQCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc---CCEEEEEEechHHHHHHHHHHcCCC-CccceeccChhh
Confidence 569999999999999888663 2235678999999988888775311 223444566654
No 357
>PRK07985 oxidoreductase; Provisional
Probab=85.08 E-value=11 Score=33.69 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH--HHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE--NAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~ 178 (352)
.++++|-.|++ |.++..+++.+...|.+|+.++.+. ...+.........+.++.++.+|+.+...- ....-
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788988864 5566666666654788888876542 233333332222344577888998753200 00012
Q ss_pred CcceEEEehhhh-------hccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVL-------DAINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l-------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+..|+++.+... ...+.+++. .+++.+.+.++.+|.+++.
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 457888765432 122233332 3455566666777876664
No 358
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=84.97 E-value=0.75 Score=35.34 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=56.5
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--C--CCCCCCcceEEEehhhhhc
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--N--PPFAPESLDIVLLIFVLDA 192 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~--~~~~~~~fD~V~~~~~l~~ 192 (352)
|.|..+..+++. .|.+|+++|.++.-++.+++.-. ..+ .|..+... . .......+|+|+-...
T Consensus 1 ~vG~~a~q~ak~---~G~~vi~~~~~~~k~~~~~~~Ga------~~~-~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKA---MGAKVIATDRSEEKLELAKELGA------DHV-IDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHH---TTSEEEEEESSHHHHHHHHHTTE------SEE-EETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHH---cCCEEEEEECCHHHHHHHHhhcc------ccc-ccccccccccccccccccccceEEEEecC---
Confidence 457788888887 45899999999999999987531 111 22221100 0 0012347999875422
Q ss_pred cChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 193 INPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 193 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
-...++....+|+|+|.+++.-..
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEESST
T ss_pred -----cHHHHHHHHHHhccCCEEEEEEcc
Confidence 135778888999999999987543
No 359
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.55 E-value=1.6 Score=37.88 Aligned_cols=80 Identities=16% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
++||=.|++ |.++..+++.+...|.+|++++-++...+.........+.++.++.+|+.+............|+|+.+.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 468877774 4566666665544788999998887665554443333344678889998753210011124689888754
Q ss_pred h
Q psy11741 189 V 189 (352)
Q Consensus 189 ~ 189 (352)
.
T Consensus 82 g 82 (257)
T PRK09291 82 G 82 (257)
T ss_pred C
Confidence 3
No 360
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.25 E-value=3.3 Score=36.19 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCC---HHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFS---ENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s---~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 177 (352)
++.+|=.|+++ +.++..+++.+...|++|+.++.+ +..++...+... +.++.++.+|+.+...- ....
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 67899999873 677778777775578899888654 233333333221 34577888999864210 0001
Q ss_pred CCcceEEEehhhhh----------ccChhHHHH-----------HHHHHHHhcCCCEEEEEE
Q psy11741 178 PESLDIVLLIFVLD----------AINPNKMQH-----------VINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 178 ~~~fD~V~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 218 (352)
-+.+|+++.+..+. ..+.+++.. +.+.+...++++|.++..
T Consensus 85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~i 146 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTL 146 (257)
T ss_pred CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEE
Confidence 25789887654322 112222221 234556677778876654
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.15 E-value=4.1 Score=38.93 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+|| |.++..+++.+...+..++.+|.+++.++.+++.. ..+.++.+|..+...-....-..+|.|++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 456777666 67888888877656889999999999888776642 235678888875321111223568887763
No 362
>PRK05872 short chain dehydrogenase; Provisional
Probab=84.09 E-value=14 Score=32.88 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|+.++.++..++...+.... +..+..+.+|+.+...- ....-+.+
T Consensus 9 gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 9 GKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67888777655 456666666644788999999998877665444321 23455566888753200 00011568
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+..+
T Consensus 87 d~vI~nAG~ 95 (296)
T PRK05872 87 DVVVANAGI 95 (296)
T ss_pred CEEEECCCc
Confidence 999986654
No 363
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.37 E-value=4.2 Score=34.86 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=51.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
.+++|=.|+ +|.++..+++.+...+.+|++++.++...+...+.....+.++.++.+|+.+...-.. + .-+..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 567888885 5667777777665478899999998876555444333333567888999875321000 0 01357
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+...
T Consensus 85 d~lv~~ag~ 93 (241)
T PRK07454 85 DVLINNAGM 93 (241)
T ss_pred CEEEECCCc
Confidence 988875543
No 364
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.30 E-value=16 Score=32.01 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|+++| .++..+++.+...|++|+.++.+....+.+.+.... ...+.++.+|+.+...- ..-.-+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-LGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-cCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 678888998763 666666666644788898888764322333222211 13356778888763210 0001256
Q ss_pred ceEEEehhhh
Q psy11741 181 LDIVLLIFVL 190 (352)
Q Consensus 181 fD~V~~~~~l 190 (352)
+|+++.+..+
T Consensus 85 iD~linnAg~ 94 (262)
T PRK07984 85 FDGFVHSIGF 94 (262)
T ss_pred CCEEEECCcc
Confidence 8998886643
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.27 E-value=6.2 Score=37.68 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=59.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+=+|| |.++..+++.+...+..++++|.++..++.+++. ..+.++.+|..+...-....-..+|.|++...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4566665 7888888887765788999999999987776542 23677888876532111111346888776431
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.++....+....+.+.|.-.+++.
T Consensus 75 -----~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 75 -----SDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred -----ChHHHHHHHHHHHHhcCCCeEEEE
Confidence 123334444555556455444543
No 366
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.26 E-value=2.9 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=48.5
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.+||=||| |..+...+..+...+ .+|+..|-|....+.+..... .+++..+.|+.+...-... -..+|+|++.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~l-i~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVAL-IKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHH-HhcCCEEEEe
Confidence 47899999 556666655543233 799999999988887766532 3688999998764210011 1345888873
No 367
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.17 E-value=3.9 Score=36.14 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-----CCCCcceE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-----FAPESLDI 183 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~~fD~ 183 (352)
+.+|=-|+ |.++..+++.+. .|.+|+.+|.++..++.+.+.....+.++.++.+|+.+...-.. ...+.+|+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 34565564 468888888886 78899999998776655544333334467888899876421000 01256899
Q ss_pred EEehhhhhccChhHH-----------HHHHHHHHHhcCCCEEEEE
Q psy11741 184 VLLIFVLDAINPNKM-----------QHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 184 V~~~~~l~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~ 217 (352)
++.+..+... ..++ ..+++.+...++++|.+++
T Consensus 80 li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 80 LVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 8876543321 1122 2334555666666665443
No 368
>KOG3924|consensus
Probab=83.15 E-value=2 Score=39.46 Aligned_cols=109 Identities=10% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc----------ccCCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE----------EYKPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~----------~~~~~~v~~~~~d~~~~~~~~ 174 (352)
..++....|+|+|.|.....++... ....-+|+++....-+.|..+. ......+..+.+++..... .
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a--~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~-v 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYA--GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKR-V 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhh--ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHH-H
Confidence 3347788999999999988887764 3335577777654444443321 1223456777777764321 1
Q ss_pred CCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 175 PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..-....++|+++++.. + +++..-+.++..-+++|.+++-..
T Consensus 267 ~eI~~eatvi~vNN~~F--d-p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAF--D-PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred HHHhhcceEEEEecccC--C-HHHHHhhHHHHhhCCCcceEeccc
Confidence 11134678888877643 3 344444558888999998887654
No 369
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.06 E-value=4.5 Score=35.96 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=50.4
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|.=||+| .++..++..+...+.+|+++|.++..++.+..... +.....+. . .-...|+|+..-
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-----~~~~~~~~-------~-~~~~aDlVilav- 65 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-----VDEASTDL-------S-LLKDCDLVILAL- 65 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----cccccCCH-------h-HhcCCCEEEEcC-
Confidence 35556665 34444444443367799999999988887765411 11110111 0 123578888753
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
++.....+++++...++|+.++
T Consensus 66 ----p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 ----PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ----CHHHHHHHHHHHHHhCCCCcEE
Confidence 4455567788888888877433
No 370
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=82.96 E-value=19 Score=30.52 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCeEEEEcCCccc--cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGN--SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~--~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.+.|++++|+.|. .++.|+.+-..-+.++++|-+.+..+...++.....+ ..++|+.++..+. -++ .-...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~--~~~-~~~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE--VMP-GLKGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH--HHh-hccCCCE
Confidence 5678999776543 3455544433367789999998887777776665433 3468888874321 111 1245788
Q ss_pred EEehhhhhccChhHHH-HHHHHHHHhcCCCEEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQ-HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 218 (352)
++...- .++.. .+|+.+. +.|.|-+++.
T Consensus 119 ~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 119 VVVDCK-----REDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred EEEeCC-----chhHHHHHHHHhc--cCCCceEEEE
Confidence 776432 24444 5555432 4556666654
No 371
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.79 E-value=2.6 Score=33.76 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=30.0
Q ss_pred EEcCCcc--ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc--ccc--CCCceEEEEecC
Q psy11741 113 EIGCGVG--NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEY--KPDRCHAFVCDV 167 (352)
Q Consensus 113 D~GcG~G--~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~--~~~--~~~~v~~~~~d~ 167 (352)
|||++.| ..+..++.....++.+++++|+++..++..+++ ..- ....+++....+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 544444321112678999999999999988887 321 112356665544
No 372
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.70 E-value=6.7 Score=34.42 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=.|||. |..+..+++. .+.+ +++++.++...+.+++.-. ...+ .. ... .. .....+|+|
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~---~g~~~vi~~~~~~~~~~~~~~~g~--~~~~--~~--~~~---~~-~~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKA---AGAREVVGVDPDAARRELAEALGP--ADPV--AA--DTA---DE-IGGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCcEEEECCCHHHHHHHHHcCC--Cccc--cc--cch---hh-hcCCCCCEE
Confidence 377888888865 5566666665 4556 9999999988887765420 0101 00 000 00 123468988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEE
Confidence 753210 12566677889999998764
No 373
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.63 E-value=2.5 Score=38.58 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=52.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|+.++-++..++...+.....+.++.++.+|+.+...-... ..+.+
T Consensus 7 ~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 7 GAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 66788777754 455666665544788999999998887766555444445677888898753210000 01568
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 86 D~lVnnAG 93 (330)
T PRK06139 86 DVWVNNVG 93 (330)
T ss_pred CEEEECCC
Confidence 99888654
No 374
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.57 E-value=7.6 Score=33.86 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++....|+|...|.++..|.+ .+..|++||-.+- .+..- ....|+-...|-.+. .| .....|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk----r~m~V~aVDng~m-a~sL~-----dtg~v~h~r~DGfk~---~P-~r~~idWm 274 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK----RNMRVYAVDNGPM-AQSLM-----DTGQVTHLREDGFKF---RP-TRSNIDWM 274 (358)
T ss_pred hcCCceeeecccCCCccchhhhh----cceEEEEeccchh-hhhhh-----cccceeeeeccCccc---cc-CCCCCceE
Confidence 34688999999999999999999 8889999998653 22111 124567777776542 22 25678888
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
+|..+ +.+.++-..+...|..|
T Consensus 275 VCDmV------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 275 VCDMV------EKPARVAALIAKWLVNG 296 (358)
T ss_pred Eeehh------cCcHHHHHHHHHHHHcc
Confidence 88544 55566666677776654
No 375
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.52 E-value=4 Score=35.39 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=52.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|.+|+.++.++..++.........+.++.++.+|+.+...- ....-+++
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 778888885 55567777766644788999999998766655444433345678889998753210 00011467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+.+..
T Consensus 90 d~vi~~ag 97 (256)
T PRK06124 90 DILVNNVG 97 (256)
T ss_pred CEEEECCC
Confidence 88887544
No 376
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=81.85 E-value=12 Score=27.29 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=47.6
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCC-eeeeccCHHHHHHHHHhCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG-TLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~Gf 266 (352)
.++-|.+.++..++|..+....+ |.++++.-.......+.-..|. +++.++. +..+....+++.+.+.++||
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~-----lFP~~dRsp~i~~~~e~~l~~~l~~~g~ 75 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGK-----LFPRPDRSPRIYPHREEDLRRALAAAGW 75 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhc-----cCCCCCCCCcEEEeCHHHHHHHHHhCCC
Confidence 34456678899999999988644 6677753322222222112222 2333333 33456788999999999999
Q ss_pred ceEEe
Q psy11741 267 VEKQN 271 (352)
Q Consensus 267 ~~~~~ 271 (352)
.+...
T Consensus 76 ~~~r~ 80 (97)
T PF07109_consen 76 RIGRT 80 (97)
T ss_pred eeeec
Confidence 87765
No 377
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.62 E-value=4.3 Score=35.18 Aligned_cols=82 Identities=16% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|++|++++.++..++.........+.++.++.+|+.+...- ....-+..
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI 88 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 678888885 66677777776655788999999998776655544443344577888898753210 00012457
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+...
T Consensus 89 d~li~~ag~ 97 (255)
T PRK07523 89 DILVNNAGM 97 (255)
T ss_pred CEEEECCCC
Confidence 888876543
No 378
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.53 E-value=6.3 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+||=+|||. |.++..+++. .+.+ ++++|.++..++.|.... ..|..+ . ....+|+|+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~---~G~~~v~~~~~~~~rl~~a~~~~----------~i~~~~---~---~~~g~Dvvi 205 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKA---AGGSPPAVWETNPRRRDGATGYE----------VLDPEK---D---PRRDYRAIY 205 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCHHHHHhhhhcc----------ccChhh---c---cCCCCCEEE
Confidence 56788888753 4455666665 4554 677898887776664321 011111 0 134589887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-...- ...+..+.+.|+++|.+++.-
T Consensus 206 d~~G~--------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD--------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC--------HHHHHHHHHhhhcCcEEEEEe
Confidence 53221 235667788999999988753
No 379
>PRK06128 oxidoreductase; Provisional
Probab=81.35 E-value=19 Score=32.21 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=60.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH--HHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN--AVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 179 (352)
+++||=.|+ +|.++..+++.+...|.+|+.+..+.. ..+...+.....+.++.++.+|+.+...-.. ..-+
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 578888885 455667777666447788887665432 2222222222234457788899875321000 0014
Q ss_pred cceEEEehhhhhc-------cChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDA-------INPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~-------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
..|+++.+..... ++.+++. .+++.+.+.++++|.++..
T Consensus 134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 6899887654321 1222222 3455566667778876664
No 380
>PRK07814 short chain dehydrogenase; Provisional
Probab=81.25 E-value=5 Score=35.08 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|+ +|.++..+++.+...|++|++++.++..++...+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 88 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL 88 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 678888885 5667777777665578899999998876665544433334567888899875321000 0 01468
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+|+...
T Consensus 89 d~vi~~A 95 (263)
T PRK07814 89 DIVVNNV 95 (263)
T ss_pred CEEEECC
Confidence 9888754
No 381
>KOG0821|consensus
Probab=81.25 E-value=2.4 Score=35.72 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
..-|.+||.|.|.+++.+..+ ...++..++.++..+.-.+-..+..+.+......|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a---~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA---DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhc---chhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 678999999999999999875 33367777777766555544433333455555666553
No 382
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.97 E-value=4.8 Score=35.02 Aligned_cols=81 Identities=17% Similarity=-0.012 Sum_probs=53.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.| |+|.++..+++.+...|.+|+.++-++..++.........+.++.++.+|+.+...- .....+.+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i 90 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV 90 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 67888888 456677777777654788999999988776666544433345677889998853210 00001467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+.+..
T Consensus 91 d~vi~~ag 98 (259)
T PRK08213 91 DILVNNAG 98 (259)
T ss_pred CEEEECCC
Confidence 88887654
No 383
>PRK12744 short chain dehydrogenase; Provisional
Probab=80.51 E-value=5.2 Score=34.76 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC----HHHHHHHHhccccCCCceEEEEecCCCCCCCC------CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS----ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP------PFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s----~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~------~~~ 177 (352)
++++|=.|++ |.++..+++.+...+.+++.++.+ ....+...+.....+.++.++.+|+.+...-. ...
T Consensus 8 ~k~vlItGa~-~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 8 GKVVLIAGGA-KNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 5688888864 457777777665467776666542 22233222222222346788899987532100 001
Q ss_pred CCcceEEEehhhhh------ccChhHHH-----------HHHHHHHHhcCCCEEEEE
Q psy11741 178 PESLDIVLLIFVLD------AINPNKMQ-----------HVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 178 ~~~fD~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~ 217 (352)
.+..|+++.+.... ..+.+++. .+++.+.+.++++|.+++
T Consensus 87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 24689888765432 22222222 345666667777776554
No 384
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.24 E-value=5.6 Score=34.46 Aligned_cols=81 Identities=15% Similarity=0.016 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.| |+|.++..+++.+...+.+|++++.++..++...........++.++.+|+.+...- .....+..
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI 87 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67888888 555667777776654788999999998877665554333334578888898753100 00011357
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 88 d~li~~ag 95 (258)
T PRK06949 88 DILVNNSG 95 (258)
T ss_pred CEEEECCC
Confidence 88887554
No 385
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.16 E-value=5.7 Score=33.88 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+.+||=.| |+|.++..+++.+...+.+|++++.++.......+..... ..+.++.+|+.+...-.. + .-+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888 4777778887766547889999998887665554433222 457788888875321000 0 01367
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+|+...
T Consensus 84 d~vi~~a 90 (237)
T PRK07326 84 DVLIANA 90 (237)
T ss_pred CEEEECC
Confidence 8888654
No 386
>KOG1201|consensus
Probab=79.98 E-value=19 Score=32.07 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~ 179 (352)
..+..||==|.|+| +++.++..+...+.++...|+++.......+..+..+ .+....+|+++... ...-.-+
T Consensus 36 v~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred ccCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 34778888888887 4566665554478889999999987777766655443 68899999986421 0111236
Q ss_pred cceEEEehhhh
Q psy11741 180 SLDIVLLIFVL 190 (352)
Q Consensus 180 ~fD~V~~~~~l 190 (352)
..|+++.+..+
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 78888886654
No 387
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.92 E-value=3.9 Score=38.06 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~ 152 (352)
..++.+||-|.+|..+..-.+++ ...+|++||+|+..+...+-+
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~----~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLA----GPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhc----CCceEEEEeCCHHHHHHHHHH
Confidence 44588999998777666655555 556999999999888776544
No 388
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.78 E-value=5.9 Score=34.79 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC---CCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN---DNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSED 171 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~ 171 (352)
+..++|+|||.|.++..++..... +...++.||-...-. .+..+..... ..+.-+..|+.+..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 568999999999999999987732 356789999855322 2222222222 35677778887654
No 389
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.77 E-value=12 Score=32.73 Aligned_cols=81 Identities=19% Similarity=-0.013 Sum_probs=44.7
Q ss_pred CCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|++.| .++..+++.+...|++|+.++.++...+.+++.....+. ..++.+|+.+...- ....-+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC-NFVSELDVTNPKSISNLFDDIKEKWGS 86 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC-ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 677888888764 455666555543788898888764322222222221122 23567888764210 0001256
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
+|+++.+..
T Consensus 87 iDilVnnag 95 (260)
T PRK06603 87 FDFLLHGMA 95 (260)
T ss_pred ccEEEEccc
Confidence 898887553
No 390
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.68 E-value=5.6 Score=34.40 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=48.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcce
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESLD 182 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~fD 182 (352)
+++|=.|++.| ++..+++.+...|.+|++++.++..++.+.+.....+.++.++.+|+.+...-.. ..-+..|
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 46787777554 5666666554478899999998876665554443333567888999875320000 0014678
Q ss_pred EEEehh
Q psy11741 183 IVLLIF 188 (352)
Q Consensus 183 ~V~~~~ 188 (352)
+++.+.
T Consensus 81 ~lI~~a 86 (252)
T PRK07677 81 ALINNA 86 (252)
T ss_pred EEEECC
Confidence 888654
No 391
>KOG1227|consensus
Probab=79.15 E-value=0.83 Score=40.34 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=60.3
Q ss_pred CCeEEEEcCCccccHH-HHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVF-PIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~-~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..|+|+=.|-|.++. .+... ....|+++|.+|..++..+++++... .+.....+|-+ .+-++...|-|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a---gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R-----~~~~~~~AdrV 266 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA---GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR-----NPKPRLRADRV 266 (351)
T ss_pred cchhhhhhcccceEEeehhhcc---CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc-----ccCccccchhe
Confidence 4679999999999998 45553 45589999999999999998876432 12233334433 22346677777
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCC-E-EEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPG-G-MVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G-~l~~~~ 219 (352)
.... ++ .-++-.-.+.++|+|. | ++-+.+
T Consensus 267 nLGL----lP--Sse~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 267 NLGL----LP--SSEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred eecc----cc--ccccchHHHHHHhhhcCCcEEEEec
Confidence 6532 21 1122223345667774 3 444443
No 392
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.02 E-value=13 Score=33.52 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||-.||| .|..+..+++. .+.++++++.++...+.+++.. .. ..+... ... .... ..+.+|+++
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~---~G~~v~~~~~~~~~~~~~~~~g----~~-~~~~~~-~~~-~~~~-~~~~~d~vi 230 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARA---MGFETVAITRSPDKRELARKLG----AD-EVVDSG-AEL-DEQA-AAGGADVIL 230 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHhC----Cc-EEeccC-Ccc-hHHh-ccCCCCEEE
Confidence 36788888886 55555556665 5678999999998888775421 10 111110 000 0000 124689887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....- ...+..+.+.|+++|.++..
T Consensus 231 ~~~~~--------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 231 VTVVS--------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ECCCc--------HHHHHHHHHhcccCCEEEEE
Confidence 53211 12456678889999988765
No 393
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.85 E-value=5.9 Score=34.67 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|. +|.++..+++.+...|.+|++++.++..++...+.....+.++.++.+|+.+...-.. + ..+.+
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 678888874 5566677666665478899999998876655443333333456788889875320000 0 11457
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+++.+.
T Consensus 88 D~vi~~a 94 (264)
T PRK07576 88 DVLVSGA 94 (264)
T ss_pred CEEEECC
Confidence 9988644
No 394
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.60 E-value=7 Score=34.10 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHH---HHHHHHhccccCCCceEEEEecCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSEN---AVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~---~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 177 (352)
++.+|=.|++ ++.++..+++.+...|++|+.++.+.. ..+.+.+. ......+.++.+|+.+...- ....
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVREL-TEPLNPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHH-HhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence 6788999985 577888888777557888877654321 11112111 11122356778888753210 0001
Q ss_pred CCcceEEEehhhhh----------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 178 PESLDIVLLIFVLD----------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 178 ~~~fD~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
-+.+|+++.+.... ..+.+++. .+.+.+...|+.+|.++..
T Consensus 85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~i 146 (258)
T PRK07370 85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTL 146 (258)
T ss_pred cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEE
Confidence 25689888765432 11223333 2345566667777876654
No 395
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.59 E-value=6.3 Score=33.73 Aligned_cols=81 Identities=17% Similarity=0.026 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|+ +|.++..+++.+...|.+|++++.++...+.........+.++.++.+|+.+...-.. + .-+..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 567888885 6677777777664478899999998765554433333334568888999875320000 0 01367
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+....
T Consensus 86 d~vi~~ag 93 (239)
T PRK07666 86 DILINNAG 93 (239)
T ss_pred cEEEEcCc
Confidence 98887653
No 396
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.34 E-value=6.6 Score=33.92 Aligned_cols=81 Identities=15% Similarity=-0.049 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
+++||=.|++ |.++..+++.+...+.+|+.++-++.-++.+.+.....+.++.++.+|+.+...-.. ..-+.+
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 85 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL 85 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 6788888864 456666666664477899999998876665544443334568888999875320000 001467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 86 d~li~~ag 93 (253)
T PRK06172 86 DYAFNNAG 93 (253)
T ss_pred CEEEECCC
Confidence 99887654
No 397
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.23 E-value=4.5 Score=37.30 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC--CCCCCc
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP--PFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~~ 180 (352)
++.+||=.|||. |..+..+++. .+. +|+++|.++.-++.+++.-. . .++ |..+..+ .+ ......
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~---~G~~~Vi~~~~~~~~~~~~~~~Ga----~-~~i--~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAAL---AGASKIIAVDIDDRKLEWAREFGA----T-HTV--NSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHHcCC----c-eEE--cCCCcCHHHHHHHHhCCCC
Confidence 478899888743 3445556665 565 59999999998888865321 1 111 1111100 00 011235
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+-... . ...+....+.+++||.+++.-
T Consensus 246 ~d~vid~~g----~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVG----R----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCC----C----HHHHHHHHHHhccCCEEEEEC
Confidence 898874321 1 134566678899999988753
No 398
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.91 E-value=6.9 Score=33.65 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+.++|=.|++ |.++..+++.+...+.+|+++|.++..++.+.+.....+.++.++.+|+.+.... .....+.+
T Consensus 5 ~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (253)
T PRK08217 5 DKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL 83 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6788988864 4556666665544678999999998766655544433345678888998753100 00001467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+.+..
T Consensus 84 d~vi~~ag 91 (253)
T PRK08217 84 NGLINNAG 91 (253)
T ss_pred CEEEECCC
Confidence 98887543
No 399
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.82 E-value=6.7 Score=33.97 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=52.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|+++| ++..+++.+...|.+|++++.++..++.........+.++.++.+|+.+...- ....-+..
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 678898887654 55666665544788999999988777666554443345677888998753210 00011468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 88 d~lv~~ag 95 (253)
T PRK05867 88 DIAVCNAG 95 (253)
T ss_pred CEEEECCC
Confidence 98887554
No 400
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.73 E-value=5.3 Score=37.04 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCCcc
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~~f 181 (352)
++.+||=.|+|. |..+..+++. .+. +|+++|.++.-++.+++.-. . .++ |..+..+ .+ ....+.+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~---~G~~~Vi~~~~~~~r~~~a~~~Ga----~-~~i--~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVA---AGASQVVAVDLNEDKLALARELGA----T-ATV--NAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCcEEEEcCCHHHHHHHHHcCC----c-eEe--CCCchhHHHHHHHHhCCCC
Confidence 467888888753 3344555554 566 69999999998888865421 0 111 1111000 00 0112368
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|+-... . ...+....+.|+++|.+++..
T Consensus 261 d~vid~~G----~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMAG----S----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECCC----C----hHHHHHHHHHHhcCCEEEEEc
Confidence 98875321 0 134666778899999988653
No 401
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.58 E-value=4.1 Score=38.58 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEE------EEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVY------GCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~------gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+++|+=||||+=. ...+..+...|.+|+ ++|......+.|.+. + . ...++.+ .-...
T Consensus 36 gKtIaIIGyGSqG--~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----G--F--~v~~~~E-------a~~~A 98 (487)
T PRK05225 36 GKKIVIVGCGAQG--LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----G--F--KVGTYEE-------LIPQA 98 (487)
T ss_pred CCEEEEEccCHHH--HHHhCCCccccceeEEeccccccccccchHHHHHhc----C--C--ccCCHHH-------HHHhC
Confidence 8899999999833 333444444566666 566666666665543 1 1 1122221 12467
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+|++.. +......+.+++...||||..|.+.
T Consensus 99 DvVviLl-----PDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 99 DLVINLT-----PDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred CEEEEcC-----ChHHHHHHHHHHHhhCCCCCEEEec
Confidence 9888742 3334556678999999999999985
No 402
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.57 E-value=6.3 Score=34.58 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHH
Q psy11741 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHV 201 (352)
Q Consensus 122 ~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~ 201 (352)
++.|.+.. +..+|+|+|.++..++.|.+.-. +.-...+... -..+|+|+..- +......+
T Consensus 2 A~aL~~~g--~~~~v~g~d~~~~~~~~a~~~g~-----~~~~~~~~~~--------~~~~Dlvvlav-----P~~~~~~~ 61 (258)
T PF02153_consen 2 ALALRKAG--PDVEVYGYDRDPETLEAALELGI-----IDEASTDIEA--------VEDADLVVLAV-----PVSAIEDV 61 (258)
T ss_dssp HHHHHHTT--TTSEEEEE-SSHHHHHHHHHTTS-----SSEEESHHHH--------GGCCSEEEE-S------HHHHHHH
T ss_pred hHHHHhCC--CCeEEEEEeCCHHHHHHHHHCCC-----eeeccCCHhH--------hcCCCEEEEcC-----CHHHHHHH
Confidence 34455532 56899999999999998865421 1111111110 13469988743 44667888
Q ss_pred HHHHHHhcCCCEEEEE
Q psy11741 202 INQVYKYLKPGGMVLF 217 (352)
Q Consensus 202 l~~~~~~LkpgG~l~~ 217 (352)
++++...+++|+++.=
T Consensus 62 l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 62 LEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHCGS-TTSEEEE
T ss_pred HHHhhhhcCCCcEEEE
Confidence 9999998888866553
No 403
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.32 E-value=6.8 Score=35.44 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CCCCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~fD 182 (352)
++.+||-+|+|. |..+..+++. .+.+ +++++.++...+.+++.. +... .+...... ......+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~---~G~~~v~~~~~~~~~~~~~~~~g------~~~~-~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKL---NGASRVTVAEPNEEKLELAKKLG------ATET-VDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHHhC------CeEE-ecCCCCCHHHHHHhcCCCCc
Confidence 367898888652 5555666665 5555 889999998888775432 1111 11111100 0011245689
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+.... ....+..+.+.|+++|.++...
T Consensus 229 ~v~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 229 VVIEATG--------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EEEECCC--------ChHHHHHHHHHHhcCCEEEEEe
Confidence 9985321 0245667788899999987643
No 404
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.20 E-value=7.3 Score=33.70 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|++|++++.++..++.........+.++.++..|+.+...- ....-+..
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV 83 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence 567887776 44566776666654788999999988766655544433345678899998753210 00001467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 84 d~vi~~ag 91 (258)
T PRK07890 84 DALVNNAF 91 (258)
T ss_pred cEEEECCc
Confidence 98887654
No 405
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.76 E-value=27 Score=30.32 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=50.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-----CCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-----FAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~~fD 182 (352)
+.+||=.|+++ .++..+++.+...|.+|++++.++..++...... ..+.++.++.+|+.+...-.. ...+..|
T Consensus 5 ~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 5 DKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 56788887765 4556666555447889999999987766654443 223567888888875321000 0014578
Q ss_pred EEEehhhh
Q psy11741 183 IVLLIFVL 190 (352)
Q Consensus 183 ~V~~~~~l 190 (352)
.++.+...
T Consensus 83 ~lv~~ag~ 90 (263)
T PRK09072 83 VLINNAGV 90 (263)
T ss_pred EEEECCCC
Confidence 87776543
No 406
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.21 E-value=9.8 Score=32.55 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=59.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH-HHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE-NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.|++ |.++..+++.+...+.+++.+..+. ...+...+.....+.++.++.+|+.+...-.. + ..+.
T Consensus 5 ~~~vlItG~~-~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (245)
T PRK12937 5 NKVAIVTGAS-RGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR 83 (245)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 6678888875 4566666666644677777665432 22222222222233567888889875320000 0 0135
Q ss_pred ceEEEehhhhhc------cChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDA------INPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|+|+.+..... .+.+++. .+++.+.+.++++|.++...
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 84 IDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 788887554321 1222222 33455566667777776653
No 407
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=76.10 E-value=8.2 Score=33.45 Aligned_cols=81 Identities=21% Similarity=0.144 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+++| ++..+++.+...+.+++.++.+...++.........+.++.++.+|+.+...- ....-+.+
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~ 89 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV 89 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 678999996554 55666665544788999999887776655443333334577888998753210 00011467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 90 d~li~~ag 97 (255)
T PRK06113 90 DILVNNAG 97 (255)
T ss_pred CEEEECCC
Confidence 88887554
No 408
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.04 E-value=16 Score=32.11 Aligned_cols=81 Identities=17% Similarity=0.066 Sum_probs=47.0
Q ss_pred CCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCc
Q psy11741 108 TKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 180 (352)
++.+|=.|++ ++.++..+++.+...|++|+.++.+....+.+++.....+ ....+.+|+.+... .....-+.
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 6788888986 4667777777775588898887655322232222221111 24567888875321 00001256
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
.|+++.+..
T Consensus 89 iD~lv~nAG 97 (272)
T PRK08159 89 LDFVVHAIG 97 (272)
T ss_pred CcEEEECCc
Confidence 899887654
No 409
>PRK06194 hypothetical protein; Provisional
Probab=75.89 E-value=7.4 Score=34.39 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|.+|+.+|.+...++.........+.++.++.+|+.+...-.. + ..+..
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 567886664 4556677776665478899999998776655544433334467888999875320000 0 01357
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+...
T Consensus 85 d~vi~~Ag~ 93 (287)
T PRK06194 85 HLLFNNAGV 93 (287)
T ss_pred CEEEECCCC
Confidence 998886644
No 410
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=75.87 E-value=8.3 Score=34.32 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=53.5
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHH-HHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENA-VNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
|.|....+++.++...|+.+++.|.++.. .+.++..-. ...... . ..-...|+|++.-. +.
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga------~~a~s~-~-------eaa~~aDvVitmv~----~~ 68 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGA------TVAASP-A-------EAAAEADVVITMLP----DD 68 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCC------cccCCH-H-------HHHHhCCEEEEecC----CH
Confidence 66778888888876689999999999876 555544211 111110 0 01245788887432 45
Q ss_pred hHHHHHH---HHHHHhcCCCEEEEEE
Q psy11741 196 NKMQHVI---NQVYKYLKPGGMVLFR 218 (352)
Q Consensus 196 ~~~~~~l---~~~~~~LkpgG~l~~~ 218 (352)
++...++ ..+...++||.+++-.
T Consensus 69 ~~V~~V~~g~~g~~~~~~~G~i~IDm 94 (286)
T COG2084 69 AAVRAVLFGENGLLEGLKPGAIVIDM 94 (286)
T ss_pred HHHHHHHhCccchhhcCCCCCEEEEC
Confidence 6677777 4577888898776653
No 411
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.75 E-value=40 Score=29.62 Aligned_cols=82 Identities=16% Similarity=0.017 Sum_probs=47.4
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|++. +.++..+++.+...|++|+.++.+....+..++.....+. ..++.+|+.+...- ....-+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALEKKWGK 85 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 67889999876 3566666666654888999888765433333222211122 24677888753210 0001257
Q ss_pred ceEEEehhhh
Q psy11741 181 LDIVLLIFVL 190 (352)
Q Consensus 181 fD~V~~~~~l 190 (352)
.|+++.+..+
T Consensus 86 iD~lVnnAG~ 95 (271)
T PRK06505 86 LDFVVHAIGF 95 (271)
T ss_pred CCEEEECCcc
Confidence 8998876543
No 412
>PRK10537 voltage-gated potassium channel; Provisional
Probab=75.49 E-value=11 Score=35.41 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=54.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
.+|+=+ |.|..+..+++.+...+..++.+|.+.. +.. . ..+..++.+|..+...-....-++.+.|++..
T Consensus 241 ~HvII~--G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~---~---~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 241 DHFIIC--GHSPLAINTYLGLRQRGQAVTVIVPLGL--EHR---L---PDDADLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CeEEEE--CCChHHHHHHHHHHHCCCCEEEEECchh--hhh---c---cCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 456655 4556777777766446678889987621 111 1 13467889998754210111224566666532
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+.+.....+-...+.+.|+..++....
T Consensus 311 -----~dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 311 -----DNDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred -----CChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 212223333445677889888887643
No 413
>PRK08643 acetoin reductase; Validated
Probab=75.40 E-value=8.5 Score=33.32 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 181 (352)
++++|=.|+. |.++..+++.+...+.+|++++.++..++.........+.++.++.+|+.+... ......+..
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3567766654 456677776665478899999998876666554443334567788899876421 000011468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 81 d~vi~~ag 88 (256)
T PRK08643 81 NVVVNNAG 88 (256)
T ss_pred CEEEECCC
Confidence 88887553
No 414
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.39 E-value=8.3 Score=32.98 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=51.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C------CCC-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F------APE- 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~------~~~- 179 (352)
++++|=.|++.|. +..++..+...|.+|+.++.++..++...+.....+..+..+.+|+.+.. ... + .-+
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQE-SIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHH-HHHHHHHHHHHHhCC
Confidence 6788988888864 55566555448889999999988877665544333445667777876532 110 0 013
Q ss_pred cceEEEehh
Q psy11741 180 SLDIVLLIF 188 (352)
Q Consensus 180 ~fD~V~~~~ 188 (352)
.+|+++.+.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 789888865
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=74.98 E-value=8.1 Score=34.64 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|.=+|.|. |..+..+|-- -+++|+-+|+|..-++.....+ +.++.......... ...-.+.|+|+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g---lgA~Vtild~n~~rl~~ldd~f---~~rv~~~~st~~~i----ee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG---LGADVTILDLNIDRLRQLDDLF---GGRVHTLYSTPSNI----EEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhc---cCCeeEEEecCHHHHhhhhHhh---CceeEEEEcCHHHH----HHHhhhccEEEE
Confidence 56777787775 4444445443 6789999999988776655443 34455555544321 112357899987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.-.+--- ..+.-+.+++.+.+|||++++=
T Consensus 238 aVLIpga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCC--CCceehhHHHHHhcCCCcEEEE
Confidence 5544433 6677788999999999988773
No 416
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=74.62 E-value=27 Score=29.97 Aligned_cols=59 Identities=17% Similarity=0.087 Sum_probs=40.0
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
+||=.| |+|.++..+++.+...+.+|++++.++...+.........+.++.++.+|+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 566666 55667777777664478899999998876655544333233457788888875
No 417
>PRK07035 short chain dehydrogenase; Provisional
Probab=74.53 E-value=9.5 Score=32.91 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+++| ++..+++.+...|.+|++++.++..++...+.....+.++.++..|+.+...- ....-+++
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 86 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL 86 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 567888887755 55566655544788999999988766655554433345577788888753210 00001358
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 87 d~li~~ag 94 (252)
T PRK07035 87 DILVNNAA 94 (252)
T ss_pred CEEEECCC
Confidence 99886553
No 418
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=74.51 E-value=21 Score=33.46 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=25.6
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~ 152 (352)
|.|..+..++..+. .|.+|+|+|+++..++.+++.
T Consensus 7 GlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 7 GTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred CCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcC
Confidence 45555555555444 468999999999999888764
No 419
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.43 E-value=17 Score=31.79 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCeEEEEcC-CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGC-GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~Gc-G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++++|=.|+ |++.++..+++.+...|.+|+.++......+..++.....+ ....+.+|+.+...- ....-+.
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG-SDLVFPCDVASDEQIDALFASLGQHWDG 84 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC-CcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence 678898997 46677777777665478888887643222222221111111 223567888754210 0001257
Q ss_pred ceEEEehhhhh-----------ccChhHHHHH-----------HHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLD-----------AINPNKMQHV-----------INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~-----------~~~~~~~~~~-----------l~~~~~~LkpgG~l~~~ 218 (352)
+|+++.+..+. ..+.+++... .+.+...|+.+|.++..
T Consensus 85 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~i 144 (260)
T PRK06997 85 LDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 144 (260)
T ss_pred CcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEE
Confidence 89988765432 1233344432 44556667666765553
No 420
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.41 E-value=8.1 Score=33.46 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|+ +|.++..++..+...|.+|++++.++...+.+.+.....+.++.++.+|+.+...-.. + ..+..
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 567775554 4566667666665478899999998876665555444334567788999875321000 0 01357
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+...
T Consensus 86 d~vi~~ag~ 94 (262)
T PRK13394 86 DILVSNAGI 94 (262)
T ss_pred CEEEECCcc
Confidence 888775543
No 421
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.38 E-value=9.6 Score=33.12 Aligned_cols=80 Identities=10% Similarity=-0.004 Sum_probs=48.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcce
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESLD 182 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~fD 182 (352)
++||=.|+ +|.++..+++.+...+.+|++++.++...+...+.....+.++.+..+|+.+...-.. + .-+..|
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 35776664 4556666666554477899999998776655444333334567888899875320000 0 013578
Q ss_pred EEEehhh
Q psy11741 183 IVLLIFV 189 (352)
Q Consensus 183 ~V~~~~~ 189 (352)
+|+.+..
T Consensus 81 ~vi~~ag 87 (263)
T PRK06181 81 ILVNNAG 87 (263)
T ss_pred EEEECCC
Confidence 8887543
No 422
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.27 E-value=4 Score=37.96 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|+=+|+| .|..+...+.. .|.+|+++|.++.-++.+..... ..+. .+..... .+...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~---lGa~V~v~d~~~~~~~~l~~~~g---~~v~---~~~~~~~-~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG---LGATVTILDINIDRLRQLDAEFG---GRIH---TRYSNAY-EIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHhcC---ceeE---eccCCHH-HHHHHHccCCEEE
Confidence 46779999887 33333344443 56689999999877666544321 1111 1111000 0000013689998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..-.+.-. ..+.-+-+++.+.++||++++-.
T Consensus 236 ~a~~~~g~--~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 236 GAVLIPGA--KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EccccCCC--CCCcCcCHHHHhcCCCCCEEEEE
Confidence 74322111 11111235556778999876643
No 423
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.20 E-value=8.6 Score=35.31 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe----cCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC----DVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~----d~~~~~~~~~~~~~~ 180 (352)
++.+||=.|+ |.|..+..+++. .|.++++++.++.-.+.+++.... . ..+.. +..+..... ..+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~---~G~~Vi~~~~~~~k~~~~~~~lGa--~--~vi~~~~~~~~~~~i~~~--~~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL---HGCYVVGSAGSSQKVDLLKNKLGF--D--EAFNYKEEPDLDAALKRY--FPEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHhcCC--C--EEEECCCcccHHHHHHHH--CCCC
Confidence 4788998887 466777778876 567899999999887777632211 0 11110 111000001 1236
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+-. .. ...+..+.+.|++||.+++.
T Consensus 229 vD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDN-----VG----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 8988753 21 13567778899999998864
No 424
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=73.99 E-value=7.9 Score=35.23 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||-.|+| .|..+..+++. .+. .+++++.++...+.+++.... .-+.....+........ ...+.+|+|
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~---~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~i~~~-~~~~~~d~v 240 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARL---LGAARIIAVDSNPERLDLAKEAGAT--DIINPKNGDIVEQILEL-TGGRGVDCV 240 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHhCCc--EEEcCCcchHHHHHHHH-cCCCCCcEE
Confidence 46788887775 35666667775 453 788888888777776653210 00000111110000001 123568988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+....- ...+....+.|+++|.++..
T Consensus 241 ld~~g~--------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 241 IEAVGF--------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEccCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 753211 13567778899999988754
No 425
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.75 E-value=11 Score=32.19 Aligned_cols=81 Identities=17% Similarity=0.037 Sum_probs=49.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...+.+|++++-++..+..........+.++.++.+|+.+...-.. + .-+.+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 567886665 5667777776664477899999988765554444333333457888889875310000 0 01357
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+....
T Consensus 85 d~vi~~ag 92 (251)
T PRK12826 85 DILVANAG 92 (251)
T ss_pred CEEEECCC
Confidence 88877653
No 426
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=73.72 E-value=3.1 Score=34.51 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=50.8
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--------------CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--------------PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
|.|..+..+|..+...|.+|+|+|+++.-++..++-.... ..+..+ ..|... .-...|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~-------ai~~ad 78 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEE-------AIKDAD 78 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHH-------HHHH-S
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhh-------hhhccc
Confidence 5566666666655558899999999999888776542110 011111 112211 012456
Q ss_pred EEEehhhhh-----ccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLD-----AINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+++..--.- ..+...+..+++.+.+.|++|-.+++.
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 665522111 112256788999999999997777764
No 427
>PRK07063 short chain dehydrogenase; Provisional
Probab=73.52 E-value=11 Score=32.81 Aligned_cols=81 Identities=17% Similarity=0.037 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
++++|-.|+++ .++..+++.+...|++|+.++.++..++...+.... .+.++.++.+|+.+...-.. + .-+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67889888764 456666666644788999999988777666554433 23567888999875321000 0 014
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
.+|.++.+..
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6888887554
No 428
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.51 E-value=11 Score=32.98 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCC-----CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPP-----FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~-----~~~~~f 181 (352)
++++|=.|+++| ++..+++.+...|++|+.++.++..++.+.+.... .+.++.++.+|+.+...-.. ..-+..
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 677888887655 55666665544788999999988776665544332 23467888999986421000 012468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 88877543
No 429
>PRK05876 short chain dehydrogenase; Provisional
Probab=73.47 E-value=10 Score=33.46 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=51.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
++++|=.|+++ .++..+++.+...|.+|+.+|.++..++...+.....+.++.++.+|+.+...-.. ..-+..
T Consensus 6 ~k~vlVTGas~-gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (275)
T PRK05876 6 GRGAVITGGAS-GIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV 84 (275)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 66788777754 45667766665478899999998876665544433334457888899875321000 011457
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 85 d~li~nAg~ 93 (275)
T PRK05876 85 DVVFSNAGI 93 (275)
T ss_pred CEEEECCCc
Confidence 988876543
No 430
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=73.41 E-value=6.2 Score=35.84 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||-.|+|. |..+..+++. .+.+++++..++...+.+++.... .-+.....+........ .....+|+|+
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~---~g~~v~~~~~s~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~-~~~~~vd~vl 232 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKA---RGARVIVVDIDDERLEFARELGAD--DTINVGDEDVAARLREL-TDGEGADVVI 232 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHhCCC--EEecCcccCHHHHHHHH-hCCCCCCEEE
Confidence 367898888764 6666677775 677899998888888777543210 00011111110000001 1234589988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.... . ...+..+.+.|+++|.++..
T Consensus 233 d~~g----~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 233 DATG----N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ECCC----C----HHHHHHHHHHHhcCCEEEEE
Confidence 6421 0 23467778889999988764
No 431
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.29 E-value=11 Score=32.37 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
+++||=.|++ |.++..+++.+...+.+|++++.+......+.......+.++.++.+|+.+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD 63 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 5678888764 556666666654478899999998876665544433334568888999875
No 432
>PRK07024 short chain dehydrogenase; Provisional
Probab=73.22 E-value=12 Score=32.50 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
.++||=.|+ +|.++..+++.+...|.+|+.+|.++..++...+...... ++.++.+|+.+...- .....+..
T Consensus 2 ~~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 346777776 4556677776665478899999998877765544433222 688899999853210 00012457
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+...
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 998886543
No 433
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.19 E-value=11 Score=32.43 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=50.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.| |+|.++..+++.+...+.+|++++-++...+...........++.++..|+.+...- ....-+.+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 56788777 555677777776654788999999987655544433322234567788898753200 00001358
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 85 d~vi~~ag 92 (250)
T PRK07774 85 DYLVNNAA 92 (250)
T ss_pred CEEEECCC
Confidence 99887554
No 434
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=72.96 E-value=6.2 Score=35.14 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=39.9
Q ss_pred CCcceEEEehhh-hhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHH
Q psy11741 178 PESLDIVLLIFV-LDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREE 256 (352)
Q Consensus 178 ~~~fD~V~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
.+.||+|+.... .|.+.++ +.++++|+|.|++.+.... +.+.... . ---.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKfm----vdLrKEq-------------~--~~F~~k 272 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKFM----VDLRKEQ-------------L--QEFVKK 272 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchhh----eeCCHHH-------------H--HHHHHH
Confidence 367999888664 5555433 6678899999999753110 0000000 0 011456
Q ss_pred HHHHHHhCCCceEE
Q psy11741 257 VKTMFESAGFVEKQ 270 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~ 270 (352)
+.+++..+||+...
T Consensus 273 v~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 273 VKELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHHCCCcccc
Confidence 88899999998754
No 435
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.58 E-value=15 Score=32.82 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=52.8
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----------C-----------CceEEEEecC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----------P-----------DRCHAFVCDV 167 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~-----------~~v~~~~~d~ 167 (352)
.+|.=||||. .+..++..+...|.+|+.+|.++..++.+++..... + .++.+ ..|.
T Consensus 4 ~~I~ViGaG~--mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGV--MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4677788874 333333333227789999999999988765432210 0 00111 1111
Q ss_pred CCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 168 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
. .-...|+|+..- .... +....+++++.+.++|+.+++-
T Consensus 81 ~--------~~~~aDlVieav-~e~~--~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 81 E--------SLSDADFIVEAV-PEKL--DLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred H--------HhCCCCEEEEcC-cCcH--HHHHHHHHHHHhhCCCCeEEEE
Confidence 0 013468887642 1111 2356788888888888876543
No 436
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.26 E-value=8 Score=36.62 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=53.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceE-----EEEecCCCCCCCCCCCCCcce
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCH-----AFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~-----~~~~d~~~~~~~~~~~~~~fD 182 (352)
.+|.=||.|. .+..++..+...|.+|+++|.++..++..+..... ..+.+. ....... .........|
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l----~~~~~~~~aD 77 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYL----RATTTPEPAD 77 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCce----eeecccccCC
Confidence 4566676664 34444444433778999999999988864432110 000000 0000000 0000012467
Q ss_pred EEEehhhhh-----ccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLD-----AINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+..---- ..+......+++.+.+.|++|.++++..
T Consensus 78 vvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 78 AFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred EEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 776533211 0111466677888999999887666643
No 437
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.16 E-value=8.4 Score=31.54 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCcceEEEehhhhhccCh----------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 177 APESLDIVLLIFVLDAINP----------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
..+..|+|+.+++++.++. +++.+++..+.++|+|+..++..+-.+
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 4678899999998877632 356677777888888888888765443
No 438
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=72.06 E-value=4.9 Score=34.50 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=47.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+++=+||| .++..+++.+...|..|+.+|.++..++..... ......+++|.++...-....-..+|++++.
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 45556665 577777777765788999999999887763331 1236788888876431112224578998873
No 439
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=72.05 E-value=18 Score=32.71 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=56.2
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC-C-CCCCCcce
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN-P-PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~-~~~~~~fD 182 (352)
++.+||=.|. |.|..+..+++. .|.++++++.++.-.+.+++.-. . .++..+-...... . ....+.+|
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~---~G~~Vi~~~~s~~~~~~~~~lGa---~--~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKVAYLKKLGF---D--VAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHcCC---C--EEEeccccccHHHHHHHhCCCCeE
Confidence 3778888884 566777777776 56789999999988888865311 1 1111100000000 0 01134689
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+-. ... ..+....+.|+++|.++..
T Consensus 210 vv~d~-----~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 210 CYFDN-----VGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEC-----CCH----HHHHHHHHHhCcCcEEEEe
Confidence 88753 211 2346778899999999864
No 440
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.92 E-value=14 Score=33.81 Aligned_cols=81 Identities=11% Similarity=-0.002 Sum_probs=52.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|+.++.++..++...+.....+.++.++.+|+.+...-.. ..-+.+
T Consensus 8 ~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i 86 (334)
T PRK07109 8 RQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI 86 (334)
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence 56788887654 45666666554478899999999887766655544444567888999876421000 001468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 87 D~lInnAg 94 (334)
T PRK07109 87 DTWVNNAM 94 (334)
T ss_pred CEEEECCC
Confidence 98887554
No 441
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=71.78 E-value=7.7 Score=34.32 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=+|+|+ |..+..+++. .+.+ |+++|.++.-++.+++.-.. ..+...+.......+. ....+|+|
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~---~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~-~~~g~d~v 191 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAA---AGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQ-NGRGVDVA 191 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHh-CCCCCCEE
Confidence 477888888743 3344445554 5555 89999999888888764211 0000000000000011 12358888
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+-... -...+..+.+.|+|+|.+++.-
T Consensus 192 id~~G--------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 192 LEFSG--------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EECCC--------ChHHHHHHHHHhcCCCEEEEec
Confidence 75321 1235667788899999988753
No 442
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=71.65 E-value=23 Score=32.49 Aligned_cols=80 Identities=16% Similarity=0.001 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++||=.|. +|.++..+++.+...+.+|++++-++........... ...++.++.+|+.+...-... -..+|.|+.
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK-EGDRLRLFRADLQEEGSFDEA-VKGCDGVFH 85 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc-cCCeEEEEECCCCCHHHHHHH-HcCCCEEEE
Confidence 3678888774 6788888888775578899998876643332222211 124588889998753210011 124787776
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
...
T Consensus 86 ~A~ 88 (353)
T PLN02896 86 VAA 88 (353)
T ss_pred CCc
Confidence 554
No 443
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.52 E-value=16 Score=31.32 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=58.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEe-CCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCD-FSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD-~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+.+||-.|+ +|.++..+++.+...+.+++.+. .++..+..........+.++.+..+|+.+...... + .-+.
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV 84 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence 568888885 55667777776644677776544 33333322222222223346677888875320000 0 0135
Q ss_pred ceEEEehhhhhcc------ChhH-----------HHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAI------NPNK-----------MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~------~~~~-----------~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.|.|+.+...... +.+. ...+++.+.+.++++|.+++.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 139 (252)
T PRK06077 85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNI 139 (252)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEE
Confidence 7888876543211 1111 223455666677777777764
No 444
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.51 E-value=12 Score=33.41 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|++++.++..++...+.....+..+.++.+|+.+...-.. + .-+..
T Consensus 40 ~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 40 GKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV 118 (293)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 57888888754 45666666554478899999999877666554443333457788899875321000 0 12468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 119 d~li~~AG 126 (293)
T PRK05866 119 DILINNAG 126 (293)
T ss_pred CEEEECCC
Confidence 99887654
No 445
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.39 E-value=11 Score=33.49 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=54.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-------------------CCceEEEEecCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-------------------PDRCHAFVCDVTS 169 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------------~~~v~~~~~d~~~ 169 (352)
.+|.=||+|.-. ..++..+...+.+|+.+|.++..++.+++..... ..++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG--~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLG--SQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHH--HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 367778887533 3333333226789999999999888886553110 011211 122211
Q ss_pred CCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 170 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.-...|+|+..-. ..+ +-...+++++...++++.++...
T Consensus 81 -------a~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 81 -------AVKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred -------HhcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEEC
Confidence 0135688876422 111 34567788888888877655443
No 446
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=71.34 E-value=36 Score=29.19 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=38.9
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
++|=.|+ +|.++..+++.+...+.+|+.++.++..++...+.....+.++.++.+|+.+
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 60 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD 60 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 4666775 4566677666664478899999988766554444333334567788888874
No 447
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.21 E-value=12 Score=32.33 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|. +|.++..+++.+...+.+|++++.++...+.........+.++.++.+|+.+...- .....+.+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 556776554 56777888777655788999999988776655444433345688889998753210 00001357
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 83 d~vi~~a~ 90 (258)
T PRK12429 83 DILVNNAG 90 (258)
T ss_pred CEEEECCC
Confidence 98887554
No 448
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.13 E-value=13 Score=32.52 Aligned_cols=82 Identities=22% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|+++| ++..+++.+...+.+|+.++.++..++.+.......+.++.++.+|+.+...- ....-+.+
T Consensus 10 ~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (265)
T PRK07097 10 GKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI 88 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 678888888765 45555555544788999999988777665554443345688889998753210 00011468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+...
T Consensus 89 d~li~~ag~ 97 (265)
T PRK07097 89 DILVNNAGI 97 (265)
T ss_pred CEEEECCCC
Confidence 998876543
No 449
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.02 E-value=12 Score=31.77 Aligned_cols=62 Identities=23% Similarity=0.147 Sum_probs=43.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~ 170 (352)
+++||=.|+ +|.++..+++.+...+.+|++++-++...+.........+.++.++.+|+.+.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 66 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE 66 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 567887776 67777777776644778899999988766554443333345678888998753
No 450
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=71.01 E-value=13 Score=32.20 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=51.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|++ |.++..+++.+...|.+|+.++.++..+..........+.++.++.+|+.+...- .....+.+
T Consensus 9 ~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 87 (254)
T PRK08085 9 GKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI 87 (254)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence 6678888754 5567777776655788999999987766655444333334567788888753210 00012468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 88 d~vi~~ag 95 (254)
T PRK08085 88 DVLINNAG 95 (254)
T ss_pred CEEEECCC
Confidence 99888654
No 451
>PRK07102 short chain dehydrogenase; Provisional
Probab=70.65 E-value=12 Score=32.02 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCC---CCCcceEE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPF---APESLDIV 184 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~---~~~~fD~V 184 (352)
++||=.|+ +|.++..+++.+...|.+|++++.++.-.+...+.... ...++.++.+|+.+...-..+ -...+|++
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 36777775 45667777776654788999999988765543332221 235688999999864210000 01246888
Q ss_pred Eehh
Q psy11741 185 LLIF 188 (352)
Q Consensus 185 ~~~~ 188 (352)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8643
No 452
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.35 E-value=10 Score=33.87 Aligned_cols=99 Identities=11% Similarity=0.036 Sum_probs=55.0
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-------C-----------CceEEEEecCCCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-------P-----------DRCHAFVCDVTSED 171 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~-----------~~v~~~~~d~~~~~ 171 (352)
+|.=||+|. ++..++..+...+.+|+.+|.++..++.+.+..... + .++.. ..|..+
T Consensus 3 ~V~VIG~G~--mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 77 (288)
T PRK09260 3 KLVVVGAGV--MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA-- 77 (288)
T ss_pred EEEEECccH--HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH--
Confidence 566777753 444444433326789999999999998876542110 0 01111 112211
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.-...|+|+..-. .. .+-...++.++.+.++|+.++.....+
T Consensus 78 -----~~~~aD~Vi~avp-e~--~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 -----AVADADLVIEAVP-EK--LELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -----hhcCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1235688875321 11 122456778888888998766554433
No 453
>KOG1269|consensus
Probab=70.01 E-value=12 Score=34.63 Aligned_cols=108 Identities=15% Similarity=0.025 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCC----------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWN---------- 173 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~---------- 173 (352)
.+.++||.+|+.+.....+++.+ +-.+--|+++..+.+..+...... ......+..+|.......
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~--rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~ 257 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIY--RVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKS 257 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHh--cccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhh
Confidence 46789999999999998888877 445667888888888887665433 123344555554421100
Q ss_pred ---------------CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 174 ---------------PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 174 ---------------~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++..++|. ..++.|+ ++-..++......++|+|.+++.++.
T Consensus 258 ~~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~--~~~~~~f~~~~~~~~~~~~v~~~e~~ 315 (364)
T KOG1269|consen 258 FGFEHLKLEKDLALKSSFPWNTPLT---RDTITHW--QDKSALFRGRVATLKPGGKVLILEYI 315 (364)
T ss_pred ccchhhhhcccccCCCccccccccc---hhheeec--ccccHHHHhHhhccCcCceEEehhhc
Confidence 0011122222 2233333 33445677778888999988887643
No 454
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.93 E-value=18 Score=34.20 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|+=+|||.= +..++......|.+|+++|.++.-+..|+.. + .... +..+ . -...|+|+.
T Consensus 201 ~GktVvViG~G~I--G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G--~~~~--~~~e---~----v~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGDV--GKGCAQSLRGQGARVIVTEVDPICALQAAME----G--YEVM--TMEE---A----VKEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C--CEEc--cHHH---H----HcCCCEEEE
Confidence 4889999999973 2333322222677899999999877777653 1 1111 1111 0 134799886
Q ss_pred hhhhhccChhHHHHHHH-HHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVIN-QVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 220 (352)
.-. . ..++. ...+.+|+||+++..-.
T Consensus 264 atG-------~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TTG-------N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCC-------C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 321 1 22344 35788999999877543
No 455
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.93 E-value=14 Score=32.39 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=49.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcceE
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESLDI 183 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~fD~ 183 (352)
+||=.|+ +|.++..+++.+...+.+|+.++.+..-++.+.......+.++.++.+|+.+...-.. ...+.+|+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5676665 5556667766665478899999998876665544433334567888899875321000 01146898
Q ss_pred EEehhhh
Q psy11741 184 VLLIFVL 190 (352)
Q Consensus 184 V~~~~~l 190 (352)
++.+...
T Consensus 81 lI~~ag~ 87 (270)
T PRK05650 81 IVNNAGV 87 (270)
T ss_pred EEECCCC
Confidence 8876543
No 456
>PLN02253 xanthoxin dehydrogenase
Probab=69.83 E-value=15 Score=32.21 Aligned_cols=80 Identities=21% Similarity=0.082 Sum_probs=50.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
++++|=.|+ +|.++..+++.+...|++|+++|.++...+....... ...++.++.+|+.+...-.. -.-+..
T Consensus 18 ~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 18 GKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 567887775 4566777777665578899999988766654443332 23457888999986321000 001468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 96 d~li~~Ag 103 (280)
T PLN02253 96 DIMVNNAG 103 (280)
T ss_pred CEEEECCC
Confidence 88887553
No 457
>PRK08655 prephenate dehydrogenase; Provisional
Probab=69.76 E-value=20 Score=34.14 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=48.9
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHH-HHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAV-NILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|.=+| |.|.++..++..+...+.+|+++|.++... +.+.+. + +.. ..+..+ .-...|+|+..-
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----g--v~~-~~~~~e-------~~~~aDvVIlav 66 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----G--VEY-ANDNID-------AAKDADIVIISV 66 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----C--Cee-ccCHHH-------HhccCCEEEEec
Confidence 455565 345556666655543677899999987764 333321 1 211 111110 023468887643
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
+......++.++...++||..++
T Consensus 67 -----p~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 67 -----PINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred -----CHHHHHHHHHHHHhhCCCCCEEE
Confidence 33445677788888888876444
No 458
>PRK08589 short chain dehydrogenase; Validated
Probab=69.57 E-value=14 Score=32.44 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|.+|++++.+ ..++...+.....+.++.++.+|+.+...- ....-+..
T Consensus 6 ~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (272)
T PRK08589 6 NKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV 83 (272)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 667888877654 5566666554478899999988 444433333333334678888998753210 00012467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 84 d~li~~Ag 91 (272)
T PRK08589 84 DVLFNNAG 91 (272)
T ss_pred CEEEECCC
Confidence 98887654
No 459
>PRK09242 tropinone reductase; Provisional
Probab=68.85 E-value=14 Score=31.90 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCC------CCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDW------NPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~------~~~~~~~ 179 (352)
++++|=.|+++ .++..+++.+...|.+|+.++.+...++......... +.++.++.+|+.+... .....-+
T Consensus 9 ~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67888888855 4556666655447889999998887766554443322 3467788899875320 0000124
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
.+|+|+....
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 460
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=68.85 E-value=25 Score=31.54 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=51.4
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|-=||+|. .+..++..+...+.+|++.|.++..++.+.+... .. ..+..+ +.......|+|++.
T Consensus 2 ~Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~------~~-~~s~~~----~~~~~~~~dvIi~~-- 66 (298)
T TIGR00872 2 QLGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT------TG-VANLRE----LSQRLSAPRVVWVM-- 66 (298)
T ss_pred EEEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC------cc-cCCHHH----HHhhcCCCCEEEEE--
Confidence 355567654 4555555443377899999999988777654311 00 011111 00001245888764
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++......+++.+...|++|- +++.
T Consensus 67 ---vp~~~~~~v~~~l~~~l~~g~-ivid 91 (298)
T TIGR00872 67 ---VPHGIVDAVLEELAPTLEKGD-IVID 91 (298)
T ss_pred ---cCchHHHHHHHHHHhhCCCCC-EEEE
Confidence 333456777888888888874 4454
No 461
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.70 E-value=16 Score=31.50 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++. .++..+++.+...|.+|+.++.++..++.+.......+.++.++.+|+.+...... + .-+..
T Consensus 6 ~k~~lItGas~-giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 6 GKVAIITGASS-GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 56788776654 45666666554478899999998877766655444334567888889875321000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 85 d~li~~ag 92 (254)
T PRK07478 85 DIAFNNAG 92 (254)
T ss_pred CEEEECCC
Confidence 98887654
No 462
>PRK08251 short chain dehydrogenase; Provisional
Probab=68.35 E-value=15 Score=31.52 Aligned_cols=81 Identities=15% Similarity=0.005 Sum_probs=51.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
++++|=.|+ +|.++..+++.+...+.+|+.++.++..++........ .+.++.++.+|+.+...- ....-+
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456887775 56677777776654678999999988776655443322 134678889998864200 000124
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+|+.+..
T Consensus 81 ~id~vi~~ag 90 (248)
T PRK08251 81 GLDRVIVNAG 90 (248)
T ss_pred CCCEEEECCC
Confidence 5788887654
No 463
>PRK06138 short chain dehydrogenase; Provisional
Probab=68.28 E-value=16 Score=31.40 Aligned_cols=80 Identities=15% Similarity=0.031 Sum_probs=49.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.||. |.++..+++.+...|++|++++-++..+........ .+.++.++.+|+.+...-.. + .-+.+
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6688888885 556666666554477899999988766554443332 23457888999875321000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+....
T Consensus 83 d~vi~~ag 90 (252)
T PRK06138 83 DVLVNNAG 90 (252)
T ss_pred CEEEECCC
Confidence 88887544
No 464
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=68.23 E-value=20 Score=32.25 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC--eEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN--VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|.=||+|. .+..++..+...+ ..|+++|.++..++.+++. +.... ...+..+ .-...|+|+
T Consensus 6 ~~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~~~-~~~~~~~-------~~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLGDR-VTTSAAE-------AVKGADLVI 71 (307)
T ss_pred CcEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCCce-ecCCHHH-------HhcCCCEEE
Confidence 35788888775 3333333332134 4899999999887777543 11011 1111110 013578887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
..- +......+++.+...+++|+.++
T Consensus 72 iav-----p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 72 LCV-----PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ECC-----CHHHHHHHHHHHHhhCCCCCEEE
Confidence 643 22344566777878888887554
No 465
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=68.23 E-value=9.8 Score=34.70 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+||=.|. |-|.++..|++.. +..++++--|++-.+.+++..... -+.+...|+.+....+ .....+|+|+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~k~~~~~~lGAd~--vi~y~~~~~~~~v~~~-t~g~gvDvv~ 216 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSSSEKLELLKELGADH--VINYREEDFVEQVREL-TGGKGVDVVL 216 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHhcCCCE--EEcCCcccHHHHHHHH-cCCCCceEEE
Confidence 788998885 5567888899874 446777777777666666653221 1223333332211011 1124699998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
..-. ...+......|+++|.++..-.
T Consensus 217 D~vG---------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 217 DTVG---------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ECCC---------HHHHHHHHHHhccCCEEEEEec
Confidence 6432 2344556778899998887543
No 466
>PRK12829 short chain dehydrogenase; Provisional
Probab=68.07 E-value=16 Score=31.57 Aligned_cols=79 Identities=22% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++ |.++..+++.+...+.+|++++.++..++...+.... .++.++.+|+.+...-.. + .-+.+
T Consensus 11 ~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 11 GLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--AKVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 6789988775 6667777776644788999999988766554333221 246788888875321000 0 01368
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+....
T Consensus 88 d~vi~~ag 95 (264)
T PRK12829 88 DVLVNNAG 95 (264)
T ss_pred CEEEECCC
Confidence 98887543
No 467
>PRK08267 short chain dehydrogenase; Provisional
Probab=67.67 E-value=16 Score=31.59 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=49.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC----CC---CCCcce
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP----PF---APESLD 182 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~---~~~~fD 182 (352)
++|=.|++ |.++..+++.+...|.+|++++.++..++....... +.++.++.+|+.+...-. .. ..+.+|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 57777765 456666666554478899999998887766654432 346888999998632100 00 035689
Q ss_pred EEEehhh
Q psy11741 183 IVLLIFV 189 (352)
Q Consensus 183 ~V~~~~~ 189 (352)
+|+.+..
T Consensus 80 ~vi~~ag 86 (260)
T PRK08267 80 VLFNNAG 86 (260)
T ss_pred EEEECCC
Confidence 9887554
No 468
>PRK07904 short chain dehydrogenase; Provisional
Probab=67.52 E-value=17 Score=31.58 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHH-HHHHHhcccc-CCCceEEEEecCCCCCCC---CC--CCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENA-VNILKEHEEY-KPDRCHAFVCDVTSEDWN---PP--FAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~-l~~a~~~~~~-~~~~v~~~~~d~~~~~~~---~~--~~~~ 179 (352)
+.+||=.|+++ .++..+++.+... +.+|+.++.++.. ++.+.+.... ...++.++.+|+.+.... .. ...+
T Consensus 8 ~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 8 PQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 66889888854 5667777665324 4799998887653 4444333322 223688999999764310 00 1125
Q ss_pred cceEEEehh
Q psy11741 180 SLDIVLLIF 188 (352)
Q Consensus 180 ~fD~V~~~~ 188 (352)
..|+++.+.
T Consensus 87 ~id~li~~a 95 (253)
T PRK07904 87 DVDVAIVAF 95 (253)
T ss_pred CCCEEEEee
Confidence 789877644
No 469
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.41 E-value=12 Score=29.52 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=54.0
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc---cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhcc
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE---YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAI 193 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~ 193 (352)
|.|..+..++..+...+.+|+.++-++ -++..++.-- ....+..+....... ........+|+|+..-
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~viv~v----- 75 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVIS---APSADAGPYDLVIVAV----- 75 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEES---SHGHHHSTESEEEE-S-----
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccC---cchhccCCCcEEEEEe-----
Confidence 444466666665543788999999988 5554433211 111111111111110 0011356899998752
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 194 NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 194 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
...+...+++.+...+.|+..+++...+
T Consensus 76 Ka~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 76 KAYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp SGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred cccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 2245677899999999999887775444
No 470
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.39 E-value=22 Score=31.92 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCCcc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~~f 181 (352)
++.+||=.|. |.|..+..+++. .|.++++++.++.-.+.+++.-. . .++ |.....+ .+ ....+.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~---~G~~vi~~~~s~~~~~~l~~~Ga---~--~vi--~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKI---KGCKVIGCAGSDDKVAWLKELGF---D--AVF--NYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHcCC---C--EEE--eCCCccHHHHHHHHCCCCc
Confidence 4778888774 566677777776 56789999999988888866311 1 111 1111100 00 0112468
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+|+-. .. ...+....+.|+++|.++..
T Consensus 213 d~vld~-----~g----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDN-----VG----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEEC-----CC----HHHHHHHHHhhccCCEEEEE
Confidence 988753 21 13457778889999998764
No 471
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=67.35 E-value=19 Score=32.56 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+. |.++..+++.+...|.+|+.++-++...+.+.+.....+.++.++.+|+.+...- .....+..
T Consensus 6 ~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 84 (322)
T PRK07453 6 KGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL 84 (322)
T ss_pred CCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence 5678877765 4566666665544778999999887766555443322234678889998753210 00012358
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 85 D~li~nAg 92 (322)
T PRK07453 85 DALVCNAA 92 (322)
T ss_pred cEEEECCc
Confidence 99888654
No 472
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=67.26 E-value=39 Score=30.11 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=54.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|+=+|||. .+..++..+...+.+|+.++.++..++..++..... ..... ....... ... ....+|+|+..-
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~-~~~~~~~---~~~-~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEIT-VPVLAAD---DPA-ELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCcee-ecccCCC---Chh-HcCCCCEEEEec
Confidence 577788765 334444433326778999998777666655431100 00000 0000010 111 125789888743
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
...+...+++.+...+.++..+++...+.
T Consensus 75 -----k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 75 -----KAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred -----ccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 22456778888888888877666544443
No 473
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=67.07 E-value=6.6 Score=28.21 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=48.7
Q ss_pred CccccHHHHHhhcCCCC---eEEE-EEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhc
Q psy11741 117 GVGNSVFPIVEHCKNDN---VFVY-GCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDA 192 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~---~~v~-gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~ 192 (352)
|.|.++..++..+...+ .+++ +.+.+++.++...+... +.+...+..+. -...|+|+..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~advvila----- 68 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----VQATADDNEEA-------AQEADVVILA----- 68 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----TEEESEEHHHH-------HHHTSEEEE------
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----cccccCChHHh-------hccCCEEEEE-----
Confidence 55666666666553355 6888 55999998887766542 22232222210 1256888764
Q ss_pred cChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 193 INPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 193 ~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
+++.+...++.++ ..+.++..++
T Consensus 69 v~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 69 VKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred ECHHHHHHHHHHH-hhccCCCEEE
Confidence 4667778888888 6666665444
No 474
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.93 E-value=22 Score=31.78 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=54.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CC-----------CceEEEEecCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KP-----------DRCHAFVCDVTSE 170 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-----------~~v~~~~~d~~~~ 170 (352)
.+|.=||+|.-. ..++..+...+..|+.+|.+++.++.+.+.... .+ .++.+ ..|..
T Consensus 5 ~kI~vIGaG~mG--~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-- 79 (292)
T PRK07530 5 KKVGVIGAGQMG--NGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE-- 79 (292)
T ss_pred CEEEEECCcHHH--HHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH--
Confidence 467778887533 333333322778999999999988876543211 00 11211 11211
Q ss_pred CCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 171 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
. -...|+|+..-. . +..-...+++.+...++|+.+++..+.+
T Consensus 80 --~----~~~aD~Vieavp-e--~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 --D----LADCDLVIEAAT-E--DETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --H----hcCCCEEEEcCc-C--CHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 0 235688876421 1 1123456778898999998876644433
No 475
>KOG0023|consensus
Probab=66.85 E-value=7.5 Score=34.97 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=55.5
Q ss_pred CCCCeEEEEcC-CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEE-EecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGC-GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAF-VCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~Gc-G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++++|-=+|. |-|.++..+|++ -|.+|+++|-|..--+.|-+++... .-+.+. ..|..+.. ...-++-.|.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKA---MG~rV~vis~~~~kkeea~~~LGAd-~fv~~~~d~d~~~~~--~~~~dg~~~~ 253 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKA---MGMRVTVISTSSKKKEEAIKSLGAD-VFVDSTEDPDIMKAI--MKTTDGGIDT 253 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHH---hCcEEEEEeCCchhHHHHHHhcCcc-eeEEecCCHHHHHHH--HHhhcCccee
Confidence 36777755553 578899999998 6779999999986555555543211 001111 11111100 0011333444
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|.+. + ...+..+.++||++|.+++.-.
T Consensus 254 v~~~-a---------~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 254 VSNL-A---------EHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred eeec-c---------ccchHHHHHHhhcCCEEEEEeC
Confidence 4432 1 2235557788999999888644
No 476
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.61 E-value=11 Score=34.31 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=54.7
Q ss_pred CeEEEEcC--CccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCCcce
Q psy11741 109 KNILEIGC--GVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPESLD 182 (352)
Q Consensus 109 ~~vLD~Gc--G~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~~fD 182 (352)
.+||=.|+ |.|..+..+++. .|. +|++++.++...+.+++.... . .++ +..+..+ .+ ...++.+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~---~G~~~Vi~~~~s~~~~~~~~~~lGa--~--~vi--~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL---LGCSRVVGICGSDEKCQLLKSELGF--D--AAI--NYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHhcCC--c--EEE--ECCCCCHHHHHHHHCCCCce
Confidence 78888875 566677777776 566 799999998877777653211 1 111 1111000 00 01124689
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+.... . ..+..+.+.|+++|.++..
T Consensus 227 ~vid~~g-----~----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 227 VYFDNVG-----G----EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEEECCC-----c----HHHHHHHHHhccCCEEEEE
Confidence 8875321 1 1246677889999998864
No 477
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.08 E-value=24 Score=31.31 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=53.0
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CC-----------CceEEEEecCCCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KP-----------DRCHAFVCDVTSED 171 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-----------~~v~~~~~d~~~~~ 171 (352)
+|-=||+|. .+..++..+...+.+|+++|.++..++.++++... .+ .++.+ ..|..
T Consensus 5 kI~VIG~G~--mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~--- 78 (282)
T PRK05808 5 KIGVIGAGT--MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD--- 78 (282)
T ss_pred EEEEEccCH--HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---
Confidence 566677763 33333333322677999999999988765432211 11 01111 12211
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.-...|+|+..- ...+ +-...+++++.+.++|+.++...+
T Consensus 79 -----~~~~aDlVi~av-~e~~--~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 -----DLKDADLVIEAA-TENM--DLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred -----HhccCCeeeecc-cccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 124578887632 1111 233588899999999987774433
No 478
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.00 E-value=17 Score=32.37 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=55.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CC-----------CceEEEEecCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KP-----------DRCHAFVCDVTSE 170 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-----------~~v~~~~~d~~~~ 170 (352)
.+|-=||+|+ .+..+|..+...|..|+.+|.++..++.+.+++.. .+ .+++ ...|..
T Consensus 6 ~~V~ViGaG~--mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~-- 80 (286)
T PRK07819 6 QRVGVVGAGQ--MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLG-- 80 (286)
T ss_pred cEEEEEcccH--HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHH--
Confidence 3677888874 33333333222789999999999999886655321 00 0111 112221
Q ss_pred CCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc-CCCEEEEEEeCC
Q psy11741 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL-KPGGMVLFRDYG 221 (352)
Q Consensus 171 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 221 (352)
.-...|+|+-. +.+.+ +--..++..+-+++ +|+.++.-.+..
T Consensus 81 ------~~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 81 ------DFADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ------HhCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 01356887753 23322 44456778888888 677666554433
No 479
>PRK08703 short chain dehydrogenase; Provisional
Probab=65.85 E-value=19 Score=30.66 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=40.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~ 169 (352)
+++||=.|| +|.++..+++.+...+.+|++++.++..++.....+.. ....+.+...|+.+
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 678999986 55667777776655788999999988766554433322 12345667777753
No 480
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=65.82 E-value=13 Score=32.93 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=59.0
Q ss_pred EeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 139 CDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 139 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+...+...+.++++.. +|..+.+|+.+..- .-+.++.|.++...+-.+++......++.++.+-+.||..+++.
T Consensus 292 ~yl~~~~YEsir~n~~----RV~ihha~~iE~l~--~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifR 365 (414)
T COG5379 292 AYLDEGVYESIRQNLR----RVAIHHADIIELLA--GKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFR 365 (414)
T ss_pred hhhchhhHHHHHhhhh----heeeecccHHHHhc--cCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEe
Confidence 4455666666666653 47888898875321 12468899999999988998889999999999999999999997
Q ss_pred eC
Q psy11741 219 DY 220 (352)
Q Consensus 219 ~~ 220 (352)
+.
T Consensus 366 ta 367 (414)
T COG5379 366 TA 367 (414)
T ss_pred cc
Confidence 54
No 481
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=65.57 E-value=12 Score=33.34 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCC--eEEEEEeCCHHHHHHHHhccccCCCceEEEE-ecCCCCCCCCCCCCCcceEEE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDN--VFVYGCDFSENAVNILKEHEEYKPDRCHAFV-CDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.+|+=+|.| .++..++..++..+ ..++|.|.+...++.+...- +.... .+.. .......|+|+
T Consensus 4 ~~v~IvG~G--liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg------v~d~~~~~~~------~~~~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLG--LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG------VIDELTVAGL------AEAAAEADLVI 69 (279)
T ss_pred cEEEEECCc--hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC------cccccccchh------hhhcccCCEEE
Confidence 466667644 44445544443244 45799999988887776432 11111 1110 01245689988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
..- +......+++++...|+||..+.
T Consensus 70 vav-----Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 70 VAV-----PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred Eec-----cHHHHHHHHHHhcccCCCCCEEE
Confidence 753 44566788888888888875443
No 482
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.53 E-value=25 Score=32.00 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-------CCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-------NPPFA 177 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------~~~~~ 177 (352)
++.+||-.|+|. |..+..+++. .|.+ +++++.++...+.+++... . .++ +...... .....
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~---~G~~~v~~~~~~~~~~~~~~~~g~---~--~vi--~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKA---FGATKVVVTDIDPSRLEFAKELGA---T--HTV--NVRTEDTPESAEKIAELLG 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHHcCC---c--EEe--ccccccchhHHHHHHHHhC
Confidence 467887777765 5566666665 5556 8899888887777755311 1 111 1111000 00112
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
...+|+|+-.... ...+....+.|+++|.++...
T Consensus 232 ~~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 3458999864221 125667788999999987643
No 483
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=65.44 E-value=13 Score=33.34 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=53.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CC-----------CceEEEEecCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KP-----------DRCHAFVCDVTSE 170 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-----------~~v~~~~~d~~~~ 170 (352)
.+|-=||+|. .+..++..+...+.+|+++|.++..++.+++.... .+ ..+. ...+..
T Consensus 5 ~~V~vIG~G~--mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~-- 79 (295)
T PLN02545 5 KKVGVVGAGQ--MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE-- 79 (295)
T ss_pred CEEEEECCCH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH--
Confidence 4577777763 44444444433778999999999988766543211 00 0011 111111
Q ss_pred CCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 171 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.-...|+|+..- .. +++....++.++...++|+.+++.
T Consensus 80 ------~~~~aD~Vieav-~e--~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 80 ------ELRDADFIIEAI-VE--SEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ------HhCCCCEEEEcC-cc--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 013468887632 11 235556778888888888876654
No 484
>PRK07775 short chain dehydrogenase; Provisional
Probab=65.43 E-value=60 Score=28.40 Aligned_cols=61 Identities=15% Similarity=-0.012 Sum_probs=40.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
.+.+|=.|+ +|.++..+++.+...|.+|++++.++..+..........+.++.++.+|+.+
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 70 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD 70 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 457887775 4667777777665578889888887765544433332223457777888875
No 485
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=65.39 E-value=17 Score=31.44 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=49.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-C-CCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-K-PDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~-~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
+++||=.|+ +|.++..+++.+...+++|+.+|.++..++........ . ..++.++.+|+.+...- ..-.-+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356888885 55666777666654788999999987766554333221 1 13578888998753210 000014
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|.|+.+..
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6788887543
No 486
>PRK06125 short chain dehydrogenase; Provisional
Probab=64.81 E-value=21 Score=30.93 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCC--CCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWN--PPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~--~~~~~~~fD~V 184 (352)
++++|=.|+++ .++..+++.+...|++|++++.++..++.+...... .+.++.++.+|+.+...- +-..-+..|++
T Consensus 7 ~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 67888888654 466666665544788999999988776665443332 234577888888753210 00012568888
Q ss_pred Eehhh
Q psy11741 185 LLIFV 189 (352)
Q Consensus 185 ~~~~~ 189 (352)
+.+..
T Consensus 86 v~~ag 90 (259)
T PRK06125 86 VNNAG 90 (259)
T ss_pred EECCC
Confidence 87543
No 487
>PRK08303 short chain dehydrogenase; Provisional
Probab=64.67 E-value=19 Score=32.44 Aligned_cols=80 Identities=19% Similarity=0.031 Sum_probs=47.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH----------HHHHHHHhccccCCCceEEEEecCCCCCCC----
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE----------NAVNILKEHEEYKPDRCHAFVCDVTSEDWN---- 173 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~----------~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---- 173 (352)
++.+|-.|+++| ++..+++.+...|++|+.++.+. ..++.+.+.....+.++.++.+|+.+...-
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 86 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV 86 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 678899997765 56666666644788998888763 233333222222334567788998764210
Q ss_pred --CCCCCCcceEEEehh
Q psy11741 174 --PPFAPESLDIVLLIF 188 (352)
Q Consensus 174 --~~~~~~~fD~V~~~~ 188 (352)
..-.-+..|+++.+.
T Consensus 87 ~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 87 ERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHcCCccEEEECC
Confidence 000115689888765
No 488
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=64.63 E-value=12 Score=25.96 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.2
Q ss_pred CCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCC
Q psy11741 108 TKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 108 ~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s 142 (352)
+++||-+||-+|. ++..++..+. .++..+||-+.
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg-~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFG-AGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHC-C--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhc-CCCCEEEEeec
Confidence 6899999999996 4545666654 77888888653
No 489
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=64.58 E-value=12 Score=33.46 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
..++..|||.=+|+|..+..... .+..++|+|+++..++.+.++...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~----~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKN----LGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHH----cCCceEEEecCHHHHHHHHHHHHh
Confidence 34588999999999988776655 566899999999999999988754
No 490
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.44 E-value=20 Score=31.46 Aligned_cols=81 Identities=12% Similarity=-0.068 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++. .++..+++.+...|.+|+.++.++...+...+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 10 ~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 88 (278)
T PRK08277 10 GKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC 88 (278)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778777654 45566666554478899999998776655544433334467888999875321000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 89 d~li~~ag 96 (278)
T PRK08277 89 DILINGAG 96 (278)
T ss_pred CEEEECCC
Confidence 98887543
No 491
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=63.74 E-value=16 Score=35.17 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=50.6
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
|-=||.| .++..++..+...+.+|++.|.++..++...+.....+.++. ...++.+ +...-...|+|+..-
T Consensus 4 IgvIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e----~v~~l~~~d~Iil~v-- 74 (470)
T PTZ00142 4 IGLIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEE----LVNSLKKPRKVILLI-- 74 (470)
T ss_pred EEEEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHH----HHhcCCCCCEEEEEe--
Confidence 4444444 344555554443788999999999988776553221111111 1112211 000011357665531
Q ss_pred hccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 191 DAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
.+.+....+++.+...|+||-++
T Consensus 75 --~~~~~v~~vi~~l~~~L~~g~iI 97 (470)
T PTZ00142 75 --KAGEAVDETIDNLLPLLEKGDII 97 (470)
T ss_pred --CChHHHHHHHHHHHhhCCCCCEE
Confidence 13356677888888889887544
No 492
>KOG2360|consensus
Probab=63.60 E-value=13 Score=34.32 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 102 ~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
++.+.++.+|+|.+|-.|.-+.+++.... ...+++|.|.+..-.+..++.....+ ..+....+|+..
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~-n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMR-NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN 275 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhh-ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence 44566789999999999999999988775 45689999999987777776655433 445666777764
No 493
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=63.45 E-value=9.7 Score=34.42 Aligned_cols=80 Identities=13% Similarity=-0.039 Sum_probs=47.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+++||=.| |+|.++..+++.+...|.+|+++..++........... ....++.++.+|+.+....... -...|+|+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDGCETVF 82 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcCCCEEE
Confidence 57888887 56777888777765477888877666543322221111 1124688889999864210000 12478887
Q ss_pred ehhh
Q psy11741 186 LIFV 189 (352)
Q Consensus 186 ~~~~ 189 (352)
....
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7554
No 494
>PRK07062 short chain dehydrogenase; Provisional
Probab=63.28 E-value=21 Score=31.00 Aligned_cols=81 Identities=19% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
++.+|=.|++.| ++..+++.+...|.+|++++.++..++.+.+..... +.++.++.+|+.+...- ....-+
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 678888887654 556666665447889999999887666554443221 23577888898763210 000124
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+++.+..
T Consensus 87 ~id~li~~Ag 96 (265)
T PRK07062 87 GVDMLVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 495
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=63.22 E-value=22 Score=32.26 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-cCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-DVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~ 183 (352)
++.+||=.|+ |.|..+..+++. .|.++++++.++...+.+++..... .-+..... +..+..... ..+.+|+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~---~G~~Vi~~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~--~~~gvd~ 224 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL---KGCYVVGSAGSDEKVDLLKNKLGFD-DAFNYKEEPDLDAALKRY--FPNGIDI 224 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhcCCc-eeEEcCCcccHHHHHHHh--CCCCcEE
Confidence 4788988886 556677777776 6778999999988888777632110 00110000 111000011 1246898
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+-. .. ...+..+.+.|+++|.++..
T Consensus 225 v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDN-----VG----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEC-----CC----HHHHHHHHHHhccCcEEEEe
Confidence 8753 21 13466778899999998864
No 496
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=63.21 E-value=83 Score=28.29 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=56.9
Q ss_pred CeEEEEcCCc-c-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc--cc--cCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 109 KNILEIGCGV-G-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EE--YKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 109 ~~vLD~GcG~-G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~--~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.+|+=+|||. | .++..|++ .|..|+.++-++..++..++. .. ..+... ....... .+.+.+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~----~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~-~~~~~~~-----~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR----AGLPVRLILRDRQRLAAYQQAGGLTLVEQGQAS-LYAIPAE-----TADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh----CCCCeEEEEechHHHHHHhhcCCeEEeeCCcce-eeccCCC-----CcccccccC
Confidence 4788899875 2 24444444 667899999987666655432 11 011111 1111111 111235799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
+|+..- ...+...+++.+..++.++..++....+..
T Consensus 73 ~viv~v-----K~~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 73 RLLLAC-----KAYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred EEEEEC-----CHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 887642 113456788889999999987776554443
No 497
>PRK06484 short chain dehydrogenase; Validated
Probab=63.06 E-value=27 Score=33.95 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCC------Cc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAP------ES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~------~~ 180 (352)
.++.+|=.|+ +|.++..+++.+...|.+|+.++.++..++...+.. +.++..+.+|+.+...-...-. +.
T Consensus 268 ~~k~~lItGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 268 SPRVVAITGG-ARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Q ss_pred ceEEEehhhhh-------ccChhHHHHH-----------HHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLD-------AINPNKMQHV-----------INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~-------~~~~~~~~~~-----------l~~~~~~LkpgG~l~~~ 218 (352)
+|+++.+.... ..+.+++... ++.+...++.+|.+++.
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
No 498
>PRK06500 short chain dehydrogenase; Provisional
Probab=63.05 E-value=29 Score=29.66 Aligned_cols=78 Identities=12% Similarity=-0.025 Sum_probs=46.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|++ |.++..+++.+...+.+|++++.++..++...+.. +.++.++.+|+.+.... ..-..+.+
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5677777765 45666666665447889999998876655444332 34567788887643100 00011467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 82 d~vi~~ag 89 (249)
T PRK06500 82 DAVFINAG 89 (249)
T ss_pred CEEEECCC
Confidence 88876543
No 499
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=63.02 E-value=23 Score=30.67 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=47.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|++. .++..+++.+...|.+|+.+|.++...+ ........+.++.++.+|+.+.... ....-+.+
T Consensus 8 ~k~vlVtGas~-gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (260)
T PRK12823 8 GKVVVVTGAAQ-GIGRGVALRAAAEGARVVLVDRSELVHE-VAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI 85 (260)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCchHHHH-HHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 67788888654 4566666665447889999998864322 2222222334577888998753100 00001468
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+++.+.
T Consensus 86 d~lv~nA 92 (260)
T PRK12823 86 DVLINNV 92 (260)
T ss_pred eEEEECC
Confidence 9888755
No 500
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=62.87 E-value=46 Score=31.64 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-C---------CceEEEEecCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-P---------DRCHAFVCDVTSEDWNPPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~---------~~v~~~~~d~~~~~~~~~~~ 177 (352)
+.+|-=+ |.|..+..++..+. .+.+|+|+|+++..++..++..... . .+..+ ..+.. .
T Consensus 6 ~mkI~vI--GlGyvGlpmA~~la-~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~~--------~ 73 (425)
T PRK15182 6 EVKIAII--GLGYVGLPLAVEFG-KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEIE--------K 73 (425)
T ss_pred CCeEEEE--CcCcchHHHHHHHh-cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCHH--------H
Confidence 4566555 55667888877776 4689999999999988877332100 0 00011 11110 0
Q ss_pred CCcceEEEehhh-h-hc---cChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 178 PESLDIVLLIFV-L-DA---INPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~-l-~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-...|+|+..-. - .. .+........+.+.+.|++|..++...
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 134677665321 1 00 111455556678889999887666643
Done!