RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11741
(352 letters)
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 109 bits (273), Expect = 2e-28
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K +L+ G G P + D YG + S+ + + + + D+
Sbjct: 25 KTVLDCGAGGD---LPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIR 81
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
PF ES+ V + + N ++ I+++ + LKPGG+ D
Sbjct: 82 ----KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD---E 134
Query: 229 RFKKGRCLQDNFYA---RGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQI 285
R+ KG + + + RG+ + + + EE F+ + K++ + R +N G +I
Sbjct: 135 RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVER--INDGLKI 192
Query: 286 KM-YRVWIQAK 295
K Y +I K
Sbjct: 193 KQGYVDYIAEK 203
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 87.5 bits (217), Expect = 3e-20
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 36/205 (17%)
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
++ Y K H+ +++ + K +L+IGC G +
Sbjct: 4 SPKNSLYE------EKSGHYYNAVNPNLLKHIKKEW------KEVLDIGCSSGA----LG 47
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
K + V G + A KE + H + D+ + D P+ E D V+
Sbjct: 48 AAIKENGTRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDM--PYEEEQFDCVIF 99
Query: 187 IFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF----RDYGRYDLVQLRFKKGRCLQDNFY 241
VL+ + +P VI +V Y+K G++L + L G Y
Sbjct: 100 GDVLEHLFDPWA---VIEKVKPYIKQNGVILASIPNVSHISVLAPLL---AGNWTY-TEY 152
Query: 242 ARGDGTLVYFFTREEVKTMFESAGF 266
D T + FFT E+ MF AG+
Sbjct: 153 GLLDKTHIRFFTFNEMLRMFLKAGY 177
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 85.7 bits (212), Expect = 8e-20
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVF 123
+ A +D+F ++ + +I+E + + +LE G G GN
Sbjct: 11 EWAHTYDSFVQGEDIQYKEVFAHY----EDILEDVVNKSFGN-----VLEFGVGTGNLTN 61
Query: 124 PIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183
++ + VYG + S I KE P D + P S+D
Sbjct: 62 KLLLAGRT----VYGIEPSREMRMIAKEKL---PKEFSITEGDFL----SFEV-PTSIDT 109
Query: 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243
++ + + ++ I + + L GG ++F D D Q F+
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 244 GDGTLV-YFFTREEVKTMFESAGF-VEKQNLIDR 275
+ Y+ ++T+FE+ GF V L
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHF 203
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 80.3 bits (198), Expect = 1e-17
Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 70 DAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHC 129
+Y + + +F R + I + +L+IGCG G +E C
Sbjct: 11 SDYYFLFEEKFRGSRELVKARLRRYIPYFKGCR-------RVLDIGCGRGE----FLELC 59
Query: 130 KNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189
K + + G D +E+ + + + + D ++ + LD V++
Sbjct: 60 KEEGIESIGVDINEDMIKFCEG-------KFNVVKSDA--IEYLKSLPDKYLDGVMISHF 110
Query: 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249
++ ++P ++ +++ Y +K ++ + L D T
Sbjct: 111 VEHLDPERLFELLSLCYSKMKYSSYIV-----------IESPNPTSLYSLINFYIDPTHK 159
Query: 250 YFFTREEVKTMFESAGF 266
E +K + E GF
Sbjct: 160 KPVHPETLKFILEYLGF 176
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 80.3 bits (198), Expect = 1e-17
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 37/225 (16%)
Query: 61 LNEDVAKNWDA---FYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIG 115
+E K WD+ F+N + + R + F + ++ +L++G
Sbjct: 12 WHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKK----------EAEVLDVG 61
Query: 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP 175
CG G + + G D SE + KE E D++ + P
Sbjct: 62 CGDGYGTYKLSRTGYK----AVGVDISEVMIQKGKERGEG--PDLSFIKGDLS----SLP 111
Query: 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC 235
F E + ++ I L+ ++ +N++ + LK G G +
Sbjct: 112 FENEQFEAIMAINSLEWT-EEPLR-ALNEIKRVLKSDGYACIAILGPTAKPREN------ 163
Query: 236 LQDNFYARGDGTLVYFFTREEVKTMFESAGF--VEKQNLIDRRLQ 278
G + E + + + GF V+ + R +
Sbjct: 164 --SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVN 206
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 78.7 bits (194), Expect = 4e-17
Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 30/224 (13%)
Query: 54 DKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILE 113
+ I+ + V+ +D + +F + I + +IL+
Sbjct: 2 SLSEIKRKFDAVSGKYDE----QRRKFIPCFDDFYGVSVSIASVDTENP-------DILD 50
Query: 114 IGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN 173
+G G G ++E D SE + I K + D + D+
Sbjct: 51 LGAGTGLLSAFLMEKYPEATF--TLVDMSEKMLEIAKNRFR-GNLKVKYIEADYSKYDFE 107
Query: 174 PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR---------YD 224
+ D+V+ + + + + + Y LK G+ + D
Sbjct: 108 EKY-----DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNK 162
Query: 225 LVQLRFKK--GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+ ++ + G ++ L + + AGF
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGF 206
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 78.3 bits (193), Expect = 4e-17
Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 63/257 (24%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
E ++ ++ VH+ + + + E +EIG G G
Sbjct: 18 ERFVNEYERWFLVHRFAYLSELQAVKCLLPE---------------GRGVEIGVGTGRFA 62
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
P+ G + SE I ++ N P ES D
Sbjct: 63 VPLKI--------KIGVEPSERMAEIARKR------GVFVLKGTAE----NLPLKDESFD 104
Query: 183 IVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241
L++ + + +P + + + Y+ LK GG ++ R + ++K +
Sbjct: 105 FALMVTTICFVDDPER---ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK------E 155
Query: 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHY 301
FF+ EE+ + AGF E + +Q
Sbjct: 156 KSVFYKNARFFSTEELMDLMRKAGFEEFK--------------------VVQTLFKHPSE 195
Query: 302 LFVTEEVKTMFESAGFV 318
L E VK + FV
Sbjct: 196 LSEIEPVKEGYGEGAFV 212
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 77.3 bits (190), Expect = 9e-17
Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 38/256 (14%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
++ + + + +++ + L + ++ +L++ CGVG
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK----------RGKVLDLACGVGGFS 53
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
F + ++ V G D SE+ + +E+ + + V D F ++ D
Sbjct: 54 FLLEDYGFE----VVGVDISEDMIRKAREYAKSRESNVEFIVGDAR----KLSFEDKTFD 105
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
V+ I + P ++ V +V + LKP G + +L+ L+++
Sbjct: 106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR-------LKESLVV 158
Query: 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYL 302
+ +E +T+ F +Q+ R + VW + + L
Sbjct: 159 GQKYWISKVIPDQEERTVV--IEFKSEQDSFRVR-----------FNVWGKTGVELLAKL 205
Query: 303 FVTEEVKTMFESAGFV 318
+ T+E + + ++
Sbjct: 206 YFTKEAEEKVGNYSYL 221
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 75.6 bits (186), Expect = 3e-16
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 23/216 (10%)
Query: 55 KNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEI 114
+ ++ AKN D F + + E II T ++I
Sbjct: 3 SENKKKFDKKGAKNMDEISKTL----FAPIYPIIAE--NIINRFGITA------GTCIDI 50
Query: 115 GCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVTSEDW 172
G G G + + + DFS++ I ++ + DR DV
Sbjct: 51 GSGPGALSIALAKQSDFS---IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH---- 103
Query: 173 NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
N P D+++ + + ++Y+ LK GG ++
Sbjct: 104 NIPIEDNYADLIVSRGSVFFW-EDVAT-AFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 233 GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
++ + + + E + + + G
Sbjct: 162 EMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 73.3 bits (179), Expect = 6e-15
Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 59/240 (24%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSV 122
+ Y + + + + ++ + S + +++IG G +
Sbjct: 31 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEV---SGRTLIDIGSGPTVYQL 87
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNIL-----KEHEEYKPDRCHAFVC------------ 165
H ++ + DF E L +E + C
Sbjct: 88 LSACSHFED----ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDK 143
Query: 166 --------------DVTSEDWNPPFAPESL--DIVLLIFVLDAINPNKM--QHVINQVYK 207
DV +P L D ++ F L+A++P+ Q ++ +
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203
Query: 208 YLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF 266
L+PGG +L L++++Y G+ L V + EEV+ +G+
Sbjct: 204 LLRPGGHLLL---------------IGALEESWYLAGEARLTVVPVSEEEVREALVRSGY 248
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 72.8 bits (178), Expect = 9e-15
Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 24/221 (10%)
Query: 58 IQTLNEDVAKNWDAF--YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIG 115
+++L D K ++F + H + ++ + II + TK S IL IG
Sbjct: 5 MRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTK----SEIKILSIG 60
Query: 116 CGVGNSVFPIVE----HCKNDNVFVYGCDFSENAVNILKEHEEYKPD------RCHAFVC 165
G G I+ + + S + KE + H
Sbjct: 61 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 120
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
+ D + +I +L + + + + L +L
Sbjct: 121 SEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSG 178
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+KK L + T +++ M ++ G
Sbjct: 179 WDKLWKK------YGSRFPQDDLCQYITSDDLTQMLDNLGL 213
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 69.9 bits (171), Expect = 3e-14
Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 30/208 (14%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A +DA + + + +E L + ++LE+ G G
Sbjct: 16 RARASEYDATFVPYMDS----------AAPAALERLRAGNIR----GDVLELASGTGYWT 61
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ V D S + H D D+ DW P D
Sbjct: 62 RHLSGLADR----VTALDGSAEMIAEAGRH---GLDNVEFRQQDL--FDWTPD---RQWD 109
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
V L + ++ + V + PGG+V F D ++ +
Sbjct: 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169
Query: 243 RGDGT----LVYFFTREEVKTMFESAGF 266
DG + F + E+ + G+
Sbjct: 170 LQDGRSFRIVKVFRSPAELTERLTALGW 197
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 69.9 bits (171), Expect = 5e-14
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
N+LE+G G+ + + + SE A++ + +
Sbjct: 44 GNLLELGSFKGD----FTSRLQEHFNDITCVEASEEAISHAQGRLKDG--------ITYI 91
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL-V 226
+ P D ++L VL+ I +P + + +L GG + +
Sbjct: 92 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVAL--LKRINDDWLAEGGRLFLVCPNANAVSR 149
Query: 227 QLRFKKGRCLQDNFYARGDGTL--VYFFTREEVKTMFESAGF 266
Q+ K G ++ + + + ++ AG
Sbjct: 150 QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 68.8 bits (168), Expect = 2e-13
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 10/160 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+LE GCG+G + ++ N + + D S ++ +E+ E+ ++
Sbjct: 41 VLEAGCGIGAQTVILAKN--NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF- 97
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL- 228
+ PF S D + + FVL+ + + + + + K LKPGG + +
Sbjct: 98 ---SLPFEDSSFDHIFVCFVLEHL-QSPEE-ALKSLKKVLKPGGTITVIEGDHGSCYFHP 152
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
KK + ++ + + +GF +
Sbjct: 153 EGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 67.0 bits (163), Expect = 5e-13
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 8/162 (4%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
+ +VA W+ ++N W ++ L + +++ CG G
Sbjct: 12 DINVADAWEQYWNKTL-VNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQ 70
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESL 181
+ + V G D S++A+ I + + D + E
Sbjct: 71 TKFLSQFFPR----VIGLDVSKSALEIAAKENTAA--NISYRLLDGLVPEQAAQIHSEIG 124
Query: 182 D-IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
D + + I K + + + L G + + G
Sbjct: 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 66.6 bits (162), Expect = 5e-13
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 27/197 (13%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEH 128
WD Y + D F+ F ++EP + IL +GCG + +
Sbjct: 10 WDQRYQGAADSAPYDWFGDFSSFRALLEPELRPE------DRILVLGCGNSALSYELFLG 63
Query: 129 CKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188
+ V D+S V ++ + P + DV F S D+VL
Sbjct: 64 GFPN---VTSVDYSSVVVAAMQACYAHVP-QLRWETMDVR----KLDFPSASFDVVLEKG 115
Query: 189 VLDAINPN-------------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC 235
LDA+ + V+++V + L PGG + + +
Sbjct: 116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY 175
Query: 236 LQDNFYARGDGTLVYFF 252
+A +
Sbjct: 176 GWSLRHATYGSGFHFHL 192
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 65.6 bits (160), Expect = 8e-13
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 26/168 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++G G G + + G + + V + ++ +T
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQ----IEGLEPATRLVELARQ----THPSVTFHHGTIT-- 94
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
+ +P+ +L + L + P ++ + + ++ GG +L F
Sbjct: 95 --DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM-----------SF 141
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQ 278
G L+ Y + E+ E+AGF + D R
Sbjct: 142 FSGPSLE---PMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFP 186
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 66.3 bits (162), Expect = 1e-12
Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 19/206 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+L+IG G+G I E +G D N VN+ E ++ D+
Sbjct: 57 SKVLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVS-GNNKIIFEANDIL 112
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
F + D++ + A++ + + YK+LKP G +L DY +
Sbjct: 113 ----TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW 168
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
+ ++ Y T EE + + F D N+ + +
Sbjct: 169 DDEFKEYVKQRKY--------TLITVEEYADILTACNFKNVV-SKDLSDYWNQLLE-VEH 218
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFES 314
+ + K F+ LF ++ ++ +
Sbjct: 219 KYLHENKEEFLK-LFSEKKFISLDDG 243
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 66.1 bits (161), Expect = 1e-12
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 21/160 (13%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCD 166
I +IGCG G + H V G DF ++I + +R V
Sbjct: 48 SLIADIGCGTGGQTMVLAGHV---TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ + PF E LD++ + I + +N+ KYLK GG + + +
Sbjct: 105 MD----DLPFRNEELDLIWSEGAIYNIGFERG---LNEWRKYLKKGGYLAVSECSWFT-- 155
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
R + + Y T AG+
Sbjct: 156 DERPAEINDFWMDAYPE-------IDTIPNQVAKIHKAGY 188
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 65.3 bits (159), Expect = 1e-12
Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 45/218 (20%)
Query: 53 IDKNLIQTLNEDVAKNWDAFYNVHQNRFFK--DRHWLFTEFTEIIEPLSSTKTDTCSTKN 110
++ ++ Q ++D FY + + + R T+F + +
Sbjct: 1 MEPDMTQAFDDDTL----RFYRGNATAYAERQPRSATLTKFLGELPAGAK---------- 46
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
ILE+GCG G ++ V D S V +
Sbjct: 47 ILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRR----------LGRPVRTM 92
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
++ A ++ D V L + +++ V+ +++ LKPGG+ +
Sbjct: 93 LFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA-----------SY 141
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
K G + AR + + E ++ + AG
Sbjct: 142 KSGEGEGRDKLAR----YYNYPSEEWLRARYAEAGTWA 175
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 66.0 bits (161), Expect = 1e-12
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 21/160 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
I +IGCG G + ++ + G D + + I E+ + DR +
Sbjct: 50 IADIGCGTGGQTLFLADYV---KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
N PF E LD++ + I + +N+ KYLK GG + + +
Sbjct: 107 ----NLPFQNEELDLIWSEGAIYNIGF---ERGMNEWSKYLKKGGFIAVSEASWFT---- 155
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
E AG+
Sbjct: 156 -----SERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 66.6 bits (162), Expect = 1e-12
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+ + CG + + + ++ V + G D+ A++ + D
Sbjct: 122 VASVPCGWMSELLAL-DYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA- 179
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ 227
W E D++ + + ++ + + ++ LKPGG ++ +
Sbjct: 180 ---WKLDT-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235
Query: 228 LRFKKGRCLQDN---------FYARGDGTLVYFFTREEVKTMFESAGFVE 268
D F T + + E AGF +
Sbjct: 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTD 285
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 66.0 bits (161), Expect = 2e-12
Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 22/186 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+L++GCG+G + +V V G S VN +R D
Sbjct: 65 VLDVGCGIGKPAVRLATAR---DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM 121
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ PF S D V + L + P++ + ++ + L+PGG V D+ V+
Sbjct: 122 ----DLPFEDASFDAVWALESLHHM-PDR-GRALREMARVLRPGGTVAIADFVLLAPVEG 175
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
K+ + + G G ++ +E ++ A V +D Q
Sbjct: 176 AKKEAV----DAFRAGGG-VLSLGGIDEYESDVRQAELVVTS-TVDISAQARP-----SL 224
Query: 289 RVWIQA 294
+A
Sbjct: 225 VKTAEA 230
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 63.5 bits (155), Expect = 2e-12
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 24/133 (18%)
Query: 93 EIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152
E + + K I++ GCG G ++E +Y D + A+ +KE
Sbjct: 8 EYLPNIFEGKKGV-----IVDYGCGNGFYCKYLLEFATK----LYCIDINVIALKEVKE- 57
Query: 153 EEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL-DAINPNKMQHVINQVYKYLKP 211
+ + + S+D +L D + + I++V + LK
Sbjct: 58 ------KFDSVITLSD----PKEIPDNSVDFILFANSFHDMDDKQHV---ISEVKRILKD 104
Query: 212 GGMVLFRDYGRYD 224
G V+ D+ + +
Sbjct: 105 DGRVIIIDWRKEN 117
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 64.3 bits (157), Expect = 3e-12
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 25/158 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+L++G G G + + + + VY D E VN E + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVG-EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN- 98
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
P ++D + + F + ++ + ++ + KP + D+ + +
Sbjct: 99 ---KIPLPDNTVDFIFMAFTFHEL-SEPLK-FLEELKRVAKPFAYLAIIDWKKEER---- 149
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
KG ++ ++ EV + E AG
Sbjct: 150 -DKGPPPEE------------VYSEWEVGLILEDAGIR 174
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 64.8 bits (158), Expect = 3e-12
Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 21/200 (10%)
Query: 72 FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131
++ H H ++ ++++ + + +L++ G G+ K
Sbjct: 7 HHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEE-----VLDVATGGGHVANAFAPFVKK 61
Query: 132 DNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190
V D +E+ + + + E + D PF E IV
Sbjct: 62 ----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE----QMPFTDERFHIVTCRIAA 113
Query: 191 DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVY 250
PN +++ Y+ LK GG +L D + + D +
Sbjct: 114 HHF-PNPAS-FVSEAYRVLKKGGQLLLVDNSAPENDAFDV-----FYNYVEKERDYSHHR 166
Query: 251 FFTREEVKTMFESAGFVEKQ 270
+ + + M E AGF ++
Sbjct: 167 AWKKSDWLKMLEEAGFELEE 186
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 64.6 bits (157), Expect = 4e-12
Identities = 27/208 (12%), Positives = 54/208 (25%), Gaps = 33/208 (15%)
Query: 65 VAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP 124
A +D H + T + P LE+G G G P
Sbjct: 8 AAYAYDR-LRAHPPEVA---GQIATAMASAVHPKGEEPV-------FLELGVGTGRIALP 56
Query: 125 IVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184
++ D + + ++ + D P ES+ V
Sbjct: 57 LIARGYR----YIALDADAAMLEVFRQKIAGVDRKVQVVQADAR----AIPLPDESVHGV 108
Query: 185 LLIFVLDAINPNKMQHV------INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
+++ + V + + + LKPGG +L + ++
Sbjct: 109 IVVHLW--------HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFA 160
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGF 266
++ +EV+ G
Sbjct: 161 AEEGFPVERGLHAKRLKEVEEALRRLGL 188
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 64.9 bits (158), Expect = 4e-12
Identities = 26/188 (13%), Positives = 55/188 (29%), Gaps = 29/188 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVT 168
L++G G G + +V V + + + +E+ D
Sbjct: 86 GLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
P S D + + DA P+K V + + LKP G++ D + D +
Sbjct: 143 ----EIPCEDNSYDFI---WSQDAFLHSPDK-LKVFQECARVLKPRGVMAITDPMKEDGI 194
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
+ + + + +++ + G V + R + +
Sbjct: 195 DKSSIQPILDRIKLH--------DMGSLGLYRSLAKECGLVTLR-TFSRPDSL-----VH 240
Query: 287 MYRVWIQA 294
Y
Sbjct: 241 HYSKVKAE 248
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 62.5 bits (152), Expect = 1e-11
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
N LEIGC G + HCK + D A+ + + H
Sbjct: 53 SNGLEIGCAAGAFTEKLAPHCKR----LTVIDVMPRAIGRACQRTKRWS---HISWAATD 105
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
++ E D++++ VL + + +M+ I+ + K L PGG ++F
Sbjct: 106 ILQFST---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 62.9 bits (153), Expect = 1e-11
Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 16/159 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+L+IG G G++ + + G D ++ V + +E +
Sbjct: 25 VLDIGAGAGHTALAFSPYVQE----CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE- 79
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ PF +S DI+ + + + + +V + LK G L D+ + L
Sbjct: 80 ---SLPFPDDSFDIITCRYAAHHF-SDVRK-AVREVARVLKQDGRFLLVDHYAPEDPVLD 134
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
++ D + V + E + MF +
Sbjct: 135 E-----FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 168
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 63.0 bits (153), Expect = 1e-11
Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 38/222 (17%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
++ + + +++ + E +++ + K +L++GCG G
Sbjct: 10 DKHFFEQYSQMP---RSKEGLKAAGEWHELKKMLPDFNQ--------KTVLDLGCGFGWH 58
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESL 181
EH V G D SE + K + + P++
Sbjct: 59 CIYAAEHGAKK---VLGIDLSERMLTEAKRKTTS--PVVCYEQKAIE----DIAIEPDAY 109
Query: 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--------FKKG 233
++VL L I + +VY LK G +F R K
Sbjct: 110 NVVLSSLALHYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKL 167
Query: 234 RCLQDNFYAR--------GDGTLVYFFTREEVKTMFESAGFV 267
D ++ G+ Y T GF
Sbjct: 168 HWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQ 209
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 62.5 bits (152), Expect = 1e-11
Identities = 28/207 (13%), Positives = 63/207 (30%), Gaps = 24/207 (11%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A+ W R I+ + + + +L++GCG G +
Sbjct: 18 HQNAQAWIDAV-----RHGAIESRRQVTDQAILLAILGRQP-----ERVLDLGCGEGWLL 67
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ + + G D V+ + + A + + D
Sbjct: 68 RALADRG----IEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAK---VPVGKDYD 118
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
++ F L + + +++ + L PGG ++ + + + ++ G +
Sbjct: 119 LICANFALLHQDIIE---LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGF 175
Query: 243 RGDGTLV--YFFTREEVKTMFESAGFV 267
GD + YF T + AG
Sbjct: 176 AGDWQPMPWYFRTLASWLNALDMAGLR 202
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 62.6 bits (152), Expect = 3e-11
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 43/192 (22%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFV 164
+LE+ G+G FP ++ V + S + + ++ P DRC
Sbjct: 84 GPVLELAAGMGRLTFPFLDLGWE----VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139
Query: 165 CDVTSEDWNPPFAPESLDIVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLF------ 217
D+++ + F V++ ++ ++ + + V ++L+PGG L
Sbjct: 140 GDMSAFALDKRF-----GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194
Query: 218 ---------------RDYGRYDLVQLRFKKGRCLQDNFYARGDGT--------LVYFFTR 254
R RY L + + + T
Sbjct: 195 AAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAP 254
Query: 255 EEVKTMFESAGF 266
++V +GF
Sbjct: 255 DQVVRELVRSGF 266
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 62.2 bits (151), Expect = 3e-11
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 27/166 (16%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVF 123
D A+ A ++ I+ L D +L+IGCG G
Sbjct: 50 DSAEMMQARRAFLDAGHYQPLRD------AIVAQLRERLDDKA--TAVLDIGCGEGYYTH 101
Query: 124 PIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183
+ + +G D S+ A+ + + V PF+ S+D
Sbjct: 102 AFADAL--PEITTFGLDVSKVAIKAAAKR----YPQVTFCVASS----HRLPFSDTSMDA 151
Query: 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
++ I+ ++ + +KPGG V+ G L++L+
Sbjct: 152 IIRIYAP---------CKAEELARVVKPGGWVITATPGPRHLMELK 188
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 61.3 bits (149), Expect = 4e-11
Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 30/178 (16%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHA 162
IL+IGCG G + + V G D + A+ + + + +
Sbjct: 32 DEILDIGCGSGKISLELASKGYS----VTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 163 FVCDVTSEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221
V + + + F S D ++ L ++ +P + +I +V++ LKPG + ++G
Sbjct: 88 KVENAS----SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
Query: 222 RYDLVQLRFKKGRCLQDNFYARGDGTLV-------------YFFTREEVKTMFESAGF 266
+ L+ + R L D + +G+ + + FT +E+ + F
Sbjct: 144 Q--NWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRF 199
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 61.3 bits (149), Expect = 4e-11
Identities = 36/259 (13%), Positives = 84/259 (32%), Gaps = 49/259 (18%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A +D + + W +F ++ + L++ CG GN
Sbjct: 4 NKFAHIYDKLIRADVDY----KKWS--DFIIEKCVENNLVF-----DDYLDLACGTGNLT 52
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ KN + D S+ ++ + + + D+++ + N F D
Sbjct: 53 ENLCPKFKN----TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF-----D 103
Query: 183 IVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
++ D+ N + ++ V +LK GG+ +F D+ +K + L +
Sbjct: 104 LITCCL--DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF------DIN-SYYKLSQVLGN 154
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYF 298
N + D + Y++ + F + + V G+ K +
Sbjct: 155 NDFNYDDDEVFYYWENQ----------FEDDLVSMYISFFVRDGEFYKRFDEE------H 198
Query: 299 VHYLFVTEEVKTMFESAGF 317
+ E+++ +
Sbjct: 199 EERAYKEEDIEKYLKHGQL 217
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 61.3 bits (149), Expect = 4e-11
Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 36/213 (16%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K I +IGCG G + + +H + V G D SE + I +E +V D+
Sbjct: 35 KRIADIGCGTGTATLLLADHYE-----VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR 89
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
+ P D + ++ D++N ++ + + L GG +LF D
Sbjct: 90 ELELPEPV-----DAITILC--DSLNYLQTEADVKQTFDSAARLLTDGGKLLF------D 136
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ 284
+ Y E+ ++ + E+ + L +
Sbjct: 137 VHSP----------YKMETLFNGKTYATHAEQSSYIWFA-DPGEEPLSVVHELTFFIEGE 185
Query: 285 IKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
Y + + E+ T AGF
Sbjct: 186 DGRYDRVDE---THHQRTYPPEQYITWLREAGF 215
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 60.2 bits (146), Expect = 6e-11
Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 39/229 (17%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPIVE 127
D +F D++ L +E++E + K L++GCG G NS++ +
Sbjct: 6 RDE-------NYFTDKYELTRTHSEVLEAVKVVKP-----GKTLDLGCGNGRNSLY-LAA 52
Query: 128 HCKNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
+ + V D + ++ ++ D H V D+ + ++ + D +L
Sbjct: 53 NGYD----VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY-----DFILS 103
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG 246
VL + + +I + + KPGG L D G + G+
Sbjct: 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA--MDTADYPCTVGF---PFAFKEGE- 157
Query: 247 TLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
L ++ E E G + + + G +IK+ + A+
Sbjct: 158 -LRRYYEGWERVKYNEDVGELHRTDA--------NGNRIKLRFATMLAR 197
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 61.1 bits (148), Expect = 9e-11
Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 18/164 (10%)
Query: 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCG 117
++ L++D+ + K + S +L++GCG
Sbjct: 78 VEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-------VLDLGCG 130
Query: 118 VG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF 176
G NS++ + V D +EN++ L E +E + + D+ + + +
Sbjct: 131 QGRNSLY-LSLL----GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185
Query: 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
D ++ V +N ++ +I + ++ GG L
Sbjct: 186 -----DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 60.2 bits (146), Expect = 1e-10
Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 41/257 (15%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+A+ +D Y R + ++ F E + + +L++ CG G
Sbjct: 6 TLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKR---------EVRRVLDLACGTGIPT 56
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ E V G D E + + + + + + DV + F D
Sbjct: 57 LELAERGYE----VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-----D 107
Query: 183 IVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241
V + F + + ++ + ++V + LKPGG+ + D+ + Y
Sbjct: 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT-DFPCWF----------------Y 150
Query: 242 ARGDGTLVYFFTREEVKTMFESAGFVE-KQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVH 300
DG +V+ + E K + VE + + V + + ++
Sbjct: 151 GGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLV---DDEL 207
Query: 301 YLFVTEEVKTMFESAGF 317
++ EV+ + F
Sbjct: 208 NIYTPREVR-LLAEKYF 223
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 61.3 bits (148), Expect = 1e-10
Identities = 32/170 (18%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC---------- 160
+L++GCG G V+ + ++ V G D +N + + +++ EY ++
Sbjct: 87 VLDLGCGTGRDVYLASKLVG-EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR 145
Query: 161 --HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218
F+ ++ + + S+DIV+ V + NK+ + ++++ L+ GG + F
Sbjct: 146 FLKGFIENLATAE-PEGVPDSSVDIVISNCVCNLS-TNKLA-LFKEIHRVLRDGGELYFS 202
Query: 219 DYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
D + ++ L Y L E+ + + AGF +
Sbjct: 203 DVYADRRLSEAAQQDPIL----YG---ECLGGALYLEDFRRLVAEAGFRD 245
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 59.8 bits (145), Expect = 2e-10
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 17/176 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++GCG G I + V G D + + ++ H V D
Sbjct: 61 ILDLGCGTGQLTEKIAQSGAE----VLGTDNAATMIEKARQ----NYPHLHFDVADA--R 110
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
++ + LD V +L + + I +++ LK GG + G+ ++ +
Sbjct: 111 NFRV---DKPLDAVFSNAML--HWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILE 165
Query: 231 KKGRCLQDNFYARGDGTLVYFF-TREEVKTMFESAGF-VEKQNLIDRRLQVNRGKQ 284
L+ ++F + E + E GF V L +R + G+
Sbjct: 166 ALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEF 221
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 58.9 bits (142), Expect = 2e-10
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
L GCG G+ V + + V G D SE+A+ E K + DV
Sbjct: 70 ALVPGCGGGHDVVAMASPERF----VVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F D++ AI P +Y+ LKP G ++ Y
Sbjct: 126 TWRPTELF-----DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 58.0 bits (140), Expect = 4e-10
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 38/202 (18%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPIVE 127
WD ++ + + + + I IL + G G N+ F
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQ-----------GKILCLAEGEGRNACFLASL 50
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
+ V D S + K+ + K + ++ D+ ++ + ++ I
Sbjct: 51 GYE-----VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL--ADF--DIVADAWEGIVSI 101
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
F + + Q + +VY+ LKPGG+ + + L Y G
Sbjct: 102 FC--HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL--------------QYNTGGPK 145
Query: 248 LV-YFFTREEVKTMFESAGFVE 268
+ E +++ S ++
Sbjct: 146 DLDLLPKLETLQSELPSLNWLI 167
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 58.4 bits (140), Expect = 4e-10
Identities = 33/218 (15%), Positives = 75/218 (34%), Gaps = 28/218 (12%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
+E+VA+ + + + E + N+ ++GC G +
Sbjct: 23 DENVAEVFPDMIQ-RSVPGYSNIITAIGMLAERFVT---------ADSNVYDLGCSRGAA 72
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSEDWNPPFAPES 180
+ NV + G D S+ V ++H Y + +C+
Sbjct: 73 TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNA---- 128
Query: 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD-- 238
+V+L F L + P ++ ++Y+ L P G+++ + R++ ++
Sbjct: 129 -SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK 187
Query: 239 --NFYARGD--------GTLVYFFTREEVKTMFESAGF 266
N Y+ + ++ + E K ++ GF
Sbjct: 188 RANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGF 225
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 58.2 bits (140), Expect = 5e-10
Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 29/186 (15%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
T L+ G G+G ++ + ++ + K P +
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYAT---TDLLEPVKHMLEEAKRELAGMP-VGKFILA 147
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
+ P + D++++ + + + L P G + F++
Sbjct: 148 SME----TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG- 202
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ- 284
D F + + + + K +F +G ++ Q
Sbjct: 203 ------------DRFLVDKEDSSLT-RSDIHYKRLFNESGV----RVVKEAFQEEWPTDL 245
Query: 285 --IKMY 288
+KMY
Sbjct: 246 FPLKMY 251
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 57.5 bits (139), Expect = 5e-10
Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 33/204 (16%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+A+ ++A+Y + ++ P S +LE+G G G +
Sbjct: 4 ASLAEAYEAWYGTPLGAY--VIAEEERALKGLLPPGES----------LLEVGAGTGYWL 51
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ G + SE + + + + PF ES D
Sbjct: 52 RRLPYPQ------KVGVEPSEAMLAVGRR----RAPEATWVRAWGE----ALPFPGESFD 97
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
+VLL L+ + + + V+ + + L+PGG ++ +++ +A
Sbjct: 98 VVLLFTTLEFV-EDVER-VLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWA 155
Query: 243 RGDGTLVYFFTREEVKTMFESAGF 266
+ F RE++K +
Sbjct: 156 QA-----RFLAREDLKALLGPPEA 174
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 57.8 bits (139), Expect = 7e-10
Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 28/197 (14%)
Query: 95 IEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154
++ + T L+ G G+G ++ + V D +E+ + K +
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFRE---VDMVDITEDFLVQAKTYLG 123
Query: 155 YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214
+ R + C +D+ P+S D++ + +V+ + + + + L+P G+
Sbjct: 124 EEGKRVRNYFC-CGLQDF--TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
Query: 215 VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274
++ +D Q+ + V + V+ + SAG +L+
Sbjct: 181 IVIKD--------------NMAQEGVILDDVDSSVC-RDLDVVRRIICSAGL----SLLA 221
Query: 275 RRLQVNRGKQ---IKMY 288
Q N + + +
Sbjct: 222 EERQENLPDEIYHVYSF 238
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 57.9 bits (140), Expect = 7e-10
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 26/174 (14%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
I+++GCG G EH + +V G D SE + + D+
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGAS---YVLGLDLSEKMLARARAA--GPDTGITYERADLD 99
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD-------YG 221
+S D+ L + + + V++ L PGG +F
Sbjct: 100 K----LHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPA 153
Query: 222 RYDLVQLRFKKGRCLQDNFYARG--------DGTLVYFFTREEVKTMFESAGFV 267
R + D + G G + + T +GF
Sbjct: 154 RPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFA 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 8e-10
Identities = 59/427 (13%), Positives = 123/427 (28%), Gaps = 119/427 (27%)
Query: 3 ETGEVRPQFGNR----VLQED--------------SNVFQHNAWDHVQWDEEQEQQARKL 44
ETGE Q+ + V ++ ++ DH+ ++ +L
Sbjct: 10 ETGEH--QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 45 VENNSVLQIDKNLIQTLNEDV-AKN----WDAF-------------YNVHQNRFFKDRHW 86
++L + ++Q E+V N Y ++R + D
Sbjct: 68 FW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ- 124
Query: 87 LFT--------EFTEIIEPLSSTKTDTCSTKNILEIG-CGVGNSVFPI-------VEHCK 130
+F + ++ + L + KN+L G G G + + V+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 131 NDNVF---VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE---DWNPPFAPESLDIV 184
+ +F + C+ E + +L+ + + TS N S+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 185 LLIFVLDAINPNK---MQHVIN-QVYKYLKPGGMVLF--RDYGRYDLVQLRFKKGRCLQD 238
L + N + +V N + + +L R D + L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRG-----KQI-KMYRVWI 292
+ T +EVK++ Q+L +V I + R +
Sbjct: 294 HSMT---------LTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGL 341
Query: 293 QAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYR--------VWIQ 344
+ H +++ T+ ES + + R KM+ I
Sbjct: 342 ATWDNWKHVNC--DKLTTIIES--SLNVLEPAEYR---------KMFDRLSVFPPSAHIP 388
Query: 345 AKYMKPL 351
+ +
Sbjct: 389 TILLSLI 395
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 58.1 bits (140), Expect = 9e-10
Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 39/269 (14%)
Query: 59 QTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGV 118
Q + + A+ W + ++R + + WL ++ +L++ CG
Sbjct: 21 QYADGEAARVWQLYIGDTRSRTAEYKAWL----LGLLRQHG--------CHRVLDVACGT 68
Query: 119 GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP---- 174
G +VE + V D S+ + + + + +W
Sbjct: 69 GVDSIMLVEEGFS----VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 124
Query: 175 PFAPESLDIVLLIF------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
A + D V+ + + ++ + + + ++PGG+++ D+ YD +
Sbjct: 125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI-DHRNYDYILS 183
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
N Y + D T +++ T + +D +QV +
Sbjct: 184 TGCAPP--GKNIYYKSDLT-------KDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAP 234
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
SY+ H L + + A
Sbjct: 235 GFSKFRLSYYPHCL---ASFTELVQEAFG 260
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 57.0 bits (137), Expect = 1e-09
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 21/170 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+LE GCG G DFS + + + + + E
Sbjct: 52 VLEAGCGHGPDAARFGPQAAR----WAAYDFSPELLKLARA----NAPHADVYEWNGKGE 103
Query: 171 DWNPPFAPESL-DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
P + +++ + VI ++ + P L+ R ++ ++
Sbjct: 104 ---LPAGLGAPFGLIVSRRGPTS--------VILRLPELAAPDAHFLYVG-PRLNVPEVP 151
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQV 279
+ D L + T E+ + E G + ++ D V
Sbjct: 152 ERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATV 201
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 57.7 bits (139), Expect = 1e-09
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 24/181 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN------AVNILKEHEEYKPDRCHA-F 163
ILEIGCG G+ + + + V G D + + H P
Sbjct: 47 ILEIGCGQGDLSAVLADQV-GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105
Query: 164 VCDVTSEDWNPPFAPESLDIVLLIFVL----DAINPNKMQHVINQVYKYLKPGGMVLFRD 219
+ D P A + D V+L L A + + V +
Sbjct: 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNM------AAVCDHVDVAE 159
Query: 220 YGR--YDLVQLRFKKGRCLQDNFYARGDGTLVY---FFTREEVKTMFESAGF-VEKQNLI 273
+ L Q+ + +Q YA + T + + + + ++
Sbjct: 160 WSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219
Query: 274 D 274
+
Sbjct: 220 E 220
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 57.2 bits (138), Expect = 1e-09
Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 60/239 (25%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
++A+ +D + KD H + ++ S ++L++ CG G +
Sbjct: 16 GEIAELYDLVHQ----GKGKDYHREAADLAALVRRHSPKA------ASLLDVACGTGMHL 65
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ + V G + S + + I + D+ F
Sbjct: 66 RHLADSFGT----VEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGRRF-----S 112
Query: 183 IVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
V +F +I ++ + + ++ P G+V+ + + + ++
Sbjct: 113 AVTCMF--SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEA 170
Query: 239 N-----------------------FYARGDGTLVYF--------FTREEVKTMFESAGF 266
A D + + FTRE+ + F +AG
Sbjct: 171 GGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGL 229
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 55.9 bits (135), Expect = 3e-09
Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 41/214 (19%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
++L++ CG G + + + G + SE+ + ++ + D+
Sbjct: 42 SSLLDVACGTGTHLEHFTKEFGD----TAGLELSEDMLTHARK----RLPDATLHQGDMR 93
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
F V+ +F ++ ++ + ++L+PGG+V+ +
Sbjct: 94 DFRLGRKF-----SAVVSMF--SSVGYLKTTEELGAAVASFAEHLEPGGVVVV------E 140
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQV-NRGK 283
R DG V + + ++ V + GK
Sbjct: 141 PWWFPETFADGWVSADVVRRDGRTVARVSHSVRE---------GNATRMEVHFTVADPGK 191
Query: 284 QIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
++ + + LF E + F +AG
Sbjct: 192 GVRHFS------DVHLITLFHQAEYEAAFTAAGL 219
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
+I++ GCG G ++ + G D E + +E P D T
Sbjct: 25 HIVDYGCGYGYLGLVLMPLL-PEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT- 82
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ DI + L ++ + ++ ++ +K GG ++ + +
Sbjct: 83 ---EIEL-NDKYDIAICHAFL--LHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY 136
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTR---------EEVKTMFESAGF 266
G + L T+ ++ G
Sbjct: 137 LLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGV 182
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 54.8 bits (132), Expect = 4e-09
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 20/157 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL+ GCG G + + + V G D ++ K+ V D++
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHD----VLGTDLDPILIDYAKQ----DFPEARWVVGDLS-- 99
Query: 171 DWNPPFAPESLDIVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ D+++ V+ + + + + +++ L G + V
Sbjct: 100 --VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
F R L F ++K + + F
Sbjct: 158 F-------LEVAERVGLELENAFESWDLKPFVQGSEF 187
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 55.3 bits (133), Expect = 5e-09
Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 43/218 (19%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+ K + D + II L+ K I +IG G G
Sbjct: 6 NSIGKQYSQT-------RVPDIRIV----NAIINLLNLPKGSV-----IADIGAGTGGYS 49
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ +FVY + S H + F N +S+D
Sbjct: 50 VALANQ----GLFVYAVEPSIVMRQQAVVH-----PQVEWFTGYAE----NLALPDKSVD 96
Query: 183 IVLLIFVLDAINPNKMQHV------INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL 236
V+ I + H ++ + ++ G +VL R + L
Sbjct: 97 GVISILAI--------HHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFL 148
Query: 237 QDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274
++ +E K E+ F+ +L D
Sbjct: 149 WEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSD 186
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 54.3 bits (130), Expect = 1e-08
Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 62/235 (26%)
Query: 69 WDAFYNVHQNRFFKDR--HWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCG-VGNSVFPI 125
+Y+ + + + + P + DT +++IG G V
Sbjct: 21 LATYYSFDGSPSPEAEMLKFNLECLHKTFGP-GGLQGDT-----LIDIGSGPTIYQVLAA 74
Query: 126 VEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC------------------------- 160
+ ++ + DF++ L++ + +P
Sbjct: 75 CDSFQD----ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130
Query: 161 ------HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM--QHVINQVYKYLKPG 212
CDV + P D VL + ++ + + + + LKPG
Sbjct: 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190
Query: 213 GMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF 266
G ++ L+ Y G + EV+ AGF
Sbjct: 191 GHLVT---------------TVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGF 230
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 53.9 bits (129), Expect = 1e-08
Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 63/248 (25%)
Query: 69 WDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPI 125
+ +Y+ ++ L +I + + +++IG G +
Sbjct: 22 LEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKG------ELLIDIGSGPTIYQLLSA 75
Query: 126 VEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC------------------------- 160
E + D+++ + L++ + +P
Sbjct: 76 CESFTE----IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131
Query: 161 ------HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM--QHVINQVYKYLKPG 212
CDVT + D +L LDA P+ + + + LKPG
Sbjct: 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191
Query: 213 GMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF-VEKQ 270
G ++ D L+ ++Y G+ E V+ E AG+ +E+
Sbjct: 192 GFLVMVD---------------ALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236
Query: 271 NLIDRRLQ 278
+I +
Sbjct: 237 EVISQNYS 244
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 52.3 bits (125), Expect = 3e-08
Identities = 18/110 (16%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCD 166
K ++++GCG GN + +++ + + G D S + + K+ + P+ +
Sbjct: 31 KKVIDLGCGEGNLLSLLLKDKSFEQI--TGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
S D +I V++ ++ N++Q ++++ +P +++
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 51.0 bits (122), Expect = 1e-07
Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 31/196 (15%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+L++G G G + E V D S+ + + +E +
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFE----VVLVDPSKEMLEVAREK-----GVKNVVEAKAE 106
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ PF + + VL + D ++ NK + +++ + L P G+++ Y +
Sbjct: 107 ----DLPFPSGAFEAVLALG--DVLSYVENKDK-AFSEIRRVLVPDGLLIATVDNFYTFL 159
Query: 227 QLRFKKG------RCLQDNFYARGDGTLV---YFFTREEVKTM--FESAGF--VEKQNLI 273
Q +K R L+ + G Y F E++ ++ FE+ +
Sbjct: 160 QQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIGVMEYP 219
Query: 274 DRRLQVNRGKQIKMYR 289
D R+ ++ +
Sbjct: 220 DERISEREETIFRLEQ 235
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 51.8 bits (123), Expect = 2e-07
Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+++ GCG G+ + ++++ + + G D S + + K ++ V T
Sbjct: 723 STLVDFGCGSGSLLDSLLDYPTSLQ-TIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781
Query: 169 SEDWN---PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
D + +DI + V++ + ++ +V P +++
Sbjct: 782 LYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 49.7 bits (118), Expect = 5e-07
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 48/249 (19%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEF---------TEIIEPLSSTKTDTCSTKNIL 112
E + YN + R + R T +I + ++L
Sbjct: 16 MEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRG------DSVL 69
Query: 113 EIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSED 171
++GCG G ++++ + YG D +E ++N + K F +
Sbjct: 70 DLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126
Query: 172 WNPPFAPESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ D++ F + + ++L+PGG + R +++ R
Sbjct: 127 HMDLG--KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE-R 183
Query: 230 FKKGRCLQDNFYARGDGT----------------------LVYFFTREEVKTMFESAGF- 266
+K+GR D + + + YF + F+ G
Sbjct: 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLS 243
Query: 267 -VEKQNLID 274
VE++ ID
Sbjct: 244 LVERKGFID 252
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 48.3 bits (115), Expect = 1e-06
Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 29/202 (14%)
Query: 69 WDA-FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127
W A Y +F +R + + N ++GCG GNS + +
Sbjct: 6 WSAQQYL----KFEDERTRPARDLLAQVPLERV--------LNGYDLGCGPGNSTELLTD 53
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
+ + G D ++ + + + D+ W P + D++
Sbjct: 54 RYGVNV--ITGIDSDDDMLEKAADRLP----NTNFGKADL--ATWKP---AQKADLLYAN 102
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
V + V++Q+ L+ GG++ + + G
Sbjct: 103 AVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGG 160
Query: 248 LV---YFFTREEVKTMFESAGF 266
+ +
Sbjct: 161 GLRRKPLPPPSDYFNALSPKSS 182
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 46.9 bits (111), Expect = 2e-06
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 32/153 (20%)
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
++ +AF H+ + + W I L + + GCG I
Sbjct: 31 EDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLV----VADFGCGDCRLASSIR 86
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
V+ D + + VCD+ P ES+D+ +
Sbjct: 87 NP-------VHCFDLASLDPRVT--------------VCDMA----QVPLEDESVDVAVF 121
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
L N + + + LKPGG++ +
Sbjct: 122 CLSLMGTNIRDF---LEEANRVLKPGGLLKVAE 151
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 47.3 bits (112), Expect = 3e-06
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 90 EFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNIL 149
+F ++I+ + ++++GCG G + + + K + G D S +
Sbjct: 24 DFYKMIDEYHDGERKL-----LVDVGCGPGTATLQMAQELKPFE-QIIGSDLSATMIKTA 77
Query: 150 KEHEEYKPDRCHAFVCDVTS-EDWNPPFAPESLD-IVLLIFVLDAINPNKMQHVINQVYK 207
+ +E PD ++S +D+ A + +I ++ + + Y
Sbjct: 78 EVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYA 137
Query: 208 YLKPGGMVLFRDYG 221
L+ G + Y
Sbjct: 138 NLRKDGTIAIWGYA 151
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 46.5 bits (110), Expect = 4e-06
Identities = 17/114 (14%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHA 162
+ ++++GCG GN + +++ + + G D S ++ I +E + +R
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQI--TGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 163 FVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
+T +D D +I V++ ++ +++ ++++ +P +++
Sbjct: 89 IQGALTYQD----KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 43.7 bits (103), Expect = 5e-05
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNI----LKEHEEYKPDRCHAFV 164
I+++GCG G V + KN V D S AV ++ + DRC +
Sbjct: 224 GEIVDLGCGNG--VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 281
Query: 165 CDVTSEDWNPPFAPESLDIVLL---IFVLDAINPNKMQHVINQVYKYLKPGG 213
+ S P + VL A+ N + + + LK G
Sbjct: 282 NNALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 328
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 42.2 bits (99), Expect = 8e-05
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+++ CG GN + + V+G D + A+ + + + D
Sbjct: 26 VVDATCGNGNDTAFLASLVGENG-RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84
Query: 170 EDWNPPFAPESLDIVLLIFVLDAI-------NPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ + V+ P +++ + L GG++ Y
Sbjct: 85 N--MDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 42.5 bits (99), Expect = 1e-04
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDV 167
+ + IG G ++ H V + + + ++ E D + D
Sbjct: 124 ERAVFIGGGPLPLTGILLSHVYGMRV--NVVEIEPDIAELSRKVIEGLGVDGVNVITGDE 181
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
T D D++++ A + V +++Y+ +++R Y
Sbjct: 182 TVIDGLEF------DVLMV-----AALAEPKRRVFRNIHRYVDTETRIIYRTY 223
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 42.6 bits (100), Expect = 1e-04
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ +L++G G G + V G + +V L++ E + A DV
Sbjct: 235 RQVLDLGAGYG----ALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290
Query: 169 SEDWNPPFAPESLDIVLL---IFVLDAINPNKMQHVINQVYKYLKPGG---MVLFRDYGR 222
DI++ V A+ + Q +N L+PGG +V
Sbjct: 291 EALT----EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY 346
Query: 223 YDLVQLRFKKGRCLQDN 239
L++ +F + L+
Sbjct: 347 EPLLEEKFGAFQTLKVA 363
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 42.1 bits (99), Expect = 1e-04
Identities = 30/184 (16%), Positives = 48/184 (26%), Gaps = 27/184 (14%)
Query: 93 EIIEPLSSTKTDTCSTK-------NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA 145
I P + K T IL++G G G + + G D S
Sbjct: 15 RIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH---GITGTGIDMSSLF 71
Query: 146 VNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVIN 203
K E +R H D A E D+ +
Sbjct: 72 TAQAKRRAEELGVSERVHFIHNDAAG-----YVANEKCDVAACVGATWIAGG--FAGAEE 124
Query: 204 QVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263
+ + LKPGG++L + + + F T + F+
Sbjct: 125 LLAQSLKPGGIMLIGEPYW-----RQLPATEEIAQACGVSSTS---DFLTLPGLVGAFDD 176
Query: 264 AGFV 267
G+
Sbjct: 177 LGYD 180
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+++ G GN + K VY D E A+ + + + + D
Sbjct: 26 VVDATMGNGNDTAFLAGLSKK----VYAFDVQEQALGKTSQRLSDLGIENTE-LILD--G 78
Query: 170 EDWNPPFAPESLDIVLLIFVL-------DAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ + E + + P+ I ++ L+ GG + Y
Sbjct: 79 HENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 41.6 bits (97), Expect = 2e-04
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL +G G + + + +YG +F+ + L + + + + +
Sbjct: 81 ILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRN-----IFPILGD 134
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
P ++ V ++ D P + V+ +L+ GG +L
Sbjct: 135 ARFPEKYRHLVEGVDGLYA-DVAQPEQAAIVVRNARFFLRDGGYMLM 180
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 42.1 bits (98), Expect = 2e-04
Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 15/182 (8%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153
I S T D + + +L I G G + + D +A+ E
Sbjct: 35 ISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIA---LLVATDPDADAIARGNERY 91
Query: 154 EYKPDRCHA-----------FVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVI 202
D F +I+ F + + +
Sbjct: 92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATV 151
Query: 203 NQ-VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261
+ + GG VL L +L KK + N + + V + +
Sbjct: 152 MNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYN 211
Query: 262 ES 263
S
Sbjct: 212 PS 213
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 40.9 bits (95), Expect = 2e-04
Identities = 21/203 (10%), Positives = 47/203 (23%), Gaps = 38/203 (18%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE---------- 151
+ +L CG + + + V G + SE AV
Sbjct: 17 SLNVVPGARVLVPLCGKSQDMSWLSGQGYH----VVGAELSEAAVERYFTERGEQPHITS 72
Query: 152 ---HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKY 208
+ Y + D + + A+ + + + +
Sbjct: 73 QGDFKVYAAPGIEIWCGDFFALTARDI---GHCAAFYDRAAMIALPADMRERYVQHLEAL 129
Query: 209 LKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
+ L L+ L + + + + + + V
Sbjct: 130 MPQACSGL--------LITLEYDQAL----------LEGPPFSVPQTWLHRVMSGNWEVT 171
Query: 269 KQNLIDRRLQVNRGKQIKMYRVW 291
K D RG + + R+
Sbjct: 172 KVGGQDTLHSSARGLKAGLERMD 194
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 19/159 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+++ GCG G S+ V G S + E D + VC++
Sbjct: 121 LVDAGCGRGGSMVMAHRRF---GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ PF ++ ++ + + ++ ++LK GG +
Sbjct: 178 ----DTPFDKGAVTASWNN---ESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ 230
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
K + +F +R E V
Sbjct: 231 PSKWVSQINAHF-------ECNIHSRREYLRAMADNRLV 262
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 40.1 bits (93), Expect = 5e-04
Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 84 RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143
+ L + ++ + + L +G G + + + V Y +++
Sbjct: 56 KSKLAAAIIKGLKVMPIKRDSKI-----LYLGASAGTTPSHVADIADKGIV--YAIEYAP 108
Query: 144 NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVIN 203
+ L + + + + D P ++ V +I+ D PN+ + +I
Sbjct: 109 RIMRELLDACAEREN-IIPILGDANK----PQEYANIVEKVDVIYE-DVAQPNQAEILIK 162
Query: 204 QVYKYLKPGGMVL 216
+LK GG +
Sbjct: 163 NAKWFLKKGGYGM 175
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 39.9 bits (92), Expect = 7e-04
Identities = 31/246 (12%), Positives = 71/246 (28%), Gaps = 46/246 (18%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153
I E L + +L++GCG G + + N + D ++ +V ++
Sbjct: 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN---KLVCTDIADVSVKQCQQRY 77
Query: 154 EYKPDRCHA-------FVCDVTSEDW---NPPFAPESLDIVLLIFVLDAI--NPNKMQHV 201
E +R + F+ +S++ DI FV + + +
Sbjct: 78 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM 137
Query: 202 INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261
+ + L PGG + ++L++ G +Y ++
Sbjct: 138 LRNACERLSPGGYFIGTTPNSFELIRRLEAS--------ETESFGNEIYTVKFQKKG--- 186
Query: 262 ESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF--VE 319
+ Y ++ +L + M + V
Sbjct: 187 ------------------DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVY 228
Query: 320 KQNLID 325
K+ ++
Sbjct: 229 KKTFLE 234
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 40.1 bits (94), Expect = 7e-04
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 26/169 (15%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCD 166
K +L+IG G V++ K V + D + ++++ +R H +
Sbjct: 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIV--DL-PQQLEMMRKQTAGLSGSERIHGHGAN 237
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL----FRDYGR 222
+ D PF P D V + LD + ++ ++ +V + + V D R
Sbjct: 238 LLDRD--VPF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQR 294
Query: 223 YDLVQLRFKKGRCLQD-NFY----ARGDGTLVYFFTREEVKTMFESAGF 266
Y+ CL + Y A G+ F +++ E+AG
Sbjct: 295 YE------TASYCLTQISLYFTAMANGNSK---MFHSDDLIRCIENAGL 334
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 38.4 bits (90), Expect = 0.001
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 25/118 (21%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVC 165
+IL++GCG G I ++ D + A+ + KE+ +
Sbjct: 54 DDILDLGCGYG----VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS 109
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINP------NKMQHVINQVYKYLKPGGMVLF 217
D+ + ++ NP + +I + + LK G +
Sbjct: 110 DLYEN-----VKDRKYNKIIT-------NPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 38.8 bits (90), Expect = 0.001
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
I+E G G G + + V + E+ + E+ ++ +
Sbjct: 95 DFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWA---GFDDRVTIK 150
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
+D E++D V +LD P + V+ K LKPGG +
Sbjct: 151 LKDIYEGIEEENVDHV----ILDLPQP---ERVVEHAAKALKPGGFFVA 192
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 39.5 bits (92), Expect = 0.002
Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 22/235 (9%)
Query: 35 EEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEI 94
E +Q +L+ LQ++ NL L + +A+ + D L
Sbjct: 1174 EAPQQSLPRLLAAACQLQLNGNLQLELGQVLAQERPLLCDDPLLSGLLDAPALKACVDTA 1233
Query: 95 IEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154
+E ++S K ++E+ G ++ + N + A + + E
Sbjct: 1234 LENMASPKM------KVVEVLAG-DGQLYSRIPALLNTQPVMD---LDYTATDRNPQALE 1283
Query: 155 YKPDRCHAFVCDVTSEDWN--PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG 212
+ D P + D+++ L + + + LK G
Sbjct: 1284 AAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCALATLG--DPAVAVGNMAATLKEG 1341
Query: 213 GMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
G +L + + ++++ +++F A
Sbjct: 1342 GFLLLHTLLAGHPLGEMVGFLTSPEQGGRH--------LLSQDQWESLFAGASLH 1388
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L +G G ++ + + + + YG +FS V L + +P + D
Sbjct: 80 VLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRP-NIFPLLADAR-- 135
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
P ++ V +++ +D P++ I +LK G +L R
Sbjct: 136 --FPQSYKSVVENVDVLY-VDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR 184
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 37.5 bits (87), Expect = 0.002
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAF 163
+ K +L++G G ++ V D + A+ + + D +
Sbjct: 20 EGLEMKIVLDLGTSTG-----VITEQLRKRNTVVSTDLNIRALESHRGGNLVRADLLCSI 74
Query: 164 ---VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
DV +NPP+ P++ D ++ + VI++ + G + L
Sbjct: 75 NQESVDVVV--FNPPYVPDTDDPII------GGGYLGRE-VIDRFVDAVTVGMLYLL 122
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal
domain, methyltransferase, plasmid, transferase; HET:
SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Length = 253
Score = 38.2 bits (88), Expect = 0.002
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 19/142 (13%)
Query: 54 DKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILE 113
++L A + ++H + K+R + I + + +L+
Sbjct: 61 PESLKAAAAALSAGDVKKALSLHAST--KERLAELDTLYDFIFSAETPRR-------VLD 111
Query: 114 IGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN 173
I CG+ V+GCD + +++ K + DV
Sbjct: 112 IACGLNPLALYE-----RGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA--- 163
Query: 174 PPFAPESLDIVLLIFVLDAINP 195
PP E+ D+ L+ +L +
Sbjct: 164 PP--AEAGDLALIFKLLPLLER 183
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 37.9 bits (87), Expect = 0.003
Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 15/139 (10%)
Query: 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEF-TEIIEPLSSTKTDTCSTKNILEI 114
+ +D A + + ++R EF E+ L T + ++
Sbjct: 87 DSAVDAGDDEAVRAALLRAMSVHISTRERLPHLDEFYRELFRHLPRPNT-------LRDL 139
Query: 115 GCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP 174
CG+ P + D V + E V D+ +
Sbjct: 140 ACGLNPLAAPWMG--LPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED---R 194
Query: 175 PFAPESLDIVLLIFVLDAI 193
E D+ LL+ L +
Sbjct: 195 L--DEPADVTLLLKTLPCL 211
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 37.9 bits (87), Expect = 0.004
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 87 LFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE--HCKNDNVFVYGCDFSEN 144
F ++I+ + T D +++G GVG V + +CK+ YG + ++
Sbjct: 158 SFDLVAQMIDEIKMTDDDL-----FVDLGSGVGQVVLQVAAATNCKH----HYGVEKADI 208
Query: 145 AVNILKEHEEYKPDRCHAF-----VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQ 199
+ + + + D+ E + +IFV + ++
Sbjct: 209 PAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVD 268
Query: 200 HVINQVYKYLKPGGMVL 216
H + + + +K GG ++
Sbjct: 269 HQLKERFANMKEGGRIV 285
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 37.4 bits (87), Expect = 0.006
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 11/108 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+L++GCG G V + + + + CD S AV + F +V
Sbjct: 198 GKVLDVGCGAG--VLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVF 255
Query: 169 SEDWNPPFAPESLDIVLL---IFVLDAINPNKMQHVINQVYKYLKPGG 213
SE D+++ + + Q +I ++L GG
Sbjct: 256 SE------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG 297
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 36.9 bits (84), Expect = 0.006
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 68 NWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127
N+ +Y R L K + +++L++GC VG+ I
Sbjct: 20 NYCKYYGYRNPSCEDGR-------------LRVLKPEWFRGRDVLDLGCNVGHLTLSIAC 66
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEY 155
+ G D ++ +++ +
Sbjct: 67 KWGPSR--MVGLDIDSRLIHSARQNIRH 92
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 36.4 bits (83), Expect = 0.008
Identities = 16/128 (12%), Positives = 28/128 (21%), Gaps = 25/128 (19%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE--------------- 151
S + CG + + V G + SE +
Sbjct: 68 SGLRVFFPLCGKAIEMKWFADRGHT----VVGVEISEIGIREFFAEQNLSYTEEPLAEIA 123
Query: 152 ---HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKY 208
+ + C + D + L AINP + +
Sbjct: 124 GAKVFKSSSGSISLYCCSIFDLPRAN---IGKFDRIWDRGALVAINPGDHDRYADIILSL 180
Query: 209 LKPGGMVL 216
L+ L
Sbjct: 181 LRKEFQYL 188
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 36.6 bits (85), Expect = 0.008
Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 43/229 (18%)
Query: 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTD--TCSTKNILE 113
+L + + ++ + + L + + +L+
Sbjct: 112 DLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLD 171
Query: 114 IGCGVGNSVFPIVEHCKNDNVFVYGCDFS---ENAVNILKEHEEYKPDRCHAFVCDVTSE 170
I G + +H N +F D++ E A + R H
Sbjct: 172 ISASHGLFGIAVAQHNPNAEIFGV--DWASVLEVAKENARIQGV--ASRYHTIAGSAFEV 227
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR-------- 222
D+ D+VLL L + + ++ ++ L G V+ D+
Sbjct: 228 DY-----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP 282
Query: 223 ----YDLVQL-RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+ LV L G +T E ++MF +AGF
Sbjct: 283 DAAAFSLVMLATTPNGDA----------------YTFAEYESMFSNAGF 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.009
Identities = 48/280 (17%), Positives = 80/280 (28%), Gaps = 120/280 (42%)
Query: 62 NEDVAKN-WD-AFYNVHQNRFFKDRHWLFTE-F--TEIIE--PLSSTKTDTCSTKNILEI 114
A++ W+ A D H+ T F +I+ P++ T I
Sbjct: 1638 TSKAAQDVWNRA-----------DNHFKDTYGFSILDIVINNPVNLT---------IHFG 1677
Query: 115 GCGVGNSVFPIVEHCKNDNVFVY--GCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW 172
G G I E N + ++ D I KE E TS +
Sbjct: 1678 GEK-GKR---IRE---NYSAMIFETIVDGKLKTEKIFKEINE-----------HSTSYTF 1719
Query: 173 NPPFAPESLDIVLL-------IFVLD-AINPNKMQHVINQVYKYLKPGGMVLFRDY---- 220
L + +++ A ++ LK G++
Sbjct: 1720 RSE--KGLLS---ATQFTQPALTLMEKAA------------FEDLKSKGLIPADATFAGH 1762
Query: 221 --GRY-------------DLVQLRFKKGRCLQD----------NF--YARGDGTLVYFFT 253
G Y LV++ F +G +Q N+ A G + F+
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 254 REEVKTMFESAG-----FVEKQNLIDRRLQVN---RGKQI 285
+E ++ + E G VE I VN +Q
Sbjct: 1823 QEALQYVVERVGKRTGWLVE----I-----VNYNVENQQY 1853
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 36.0 bits (82), Expect = 0.017
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 86 WLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE--HCKNDNVFVYGCDFSE 143
L +++ + K DT +++G GVGN V C +GC+ +
Sbjct: 226 LLPNFLSDVYQQCQLKKGDT-----FMDLGSGVGNCVVQAALECGCAL----SFGCEIMD 276
Query: 144 NAVNILKEHEEYKPDRCHAF-------VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPN 196
+A ++ E RC + + + E + +I V + +
Sbjct: 277 DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDE 336
Query: 197 KMQHVINQVYKYLKPGGMVL 216
+ + ++ + K G ++
Sbjct: 337 DLNKKVEKILQTAKVGCKII 356
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 35.2 bits (80), Expect = 0.020
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCH 161
+ +LE+G G+ + + E ++ + + ++ L++ + +
Sbjct: 55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDE---HWIIECNDGVFQRLRDWAPRQTHKVI 111
Query: 162 AFVCDVTSEDWNPPFAPESLDIVL---LIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
ED P D +L + + ++ + N ++ LKPGG++ +
Sbjct: 112 --PLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 35.4 bits (82), Expect = 0.022
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 37/173 (21%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCD 166
+ ++++ G G + ++ ++ D + ++ R F +
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIW--DL-PTTRDAARKTIHAHDLGGRVEFFEKN 237
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR---- 222
+ F + D+V+L L + + + VI +KPGG +L
Sbjct: 238 LLDA---RNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDR 294
Query: 223 --------YDLVQL-RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+ L + G + + AG
Sbjct: 295 VTPALSADFSLHMMVNTNHGEL----------------HPTPWIAGVVRDAGL 331
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF
superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Length = 282
Score = 34.9 bits (79), Expect = 0.026
Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
Query: 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP 175
G+ + + + + + + + Y +D P
Sbjct: 145 QGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPT 204
Query: 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
++L ++ + D + +Y + GG V+ DY
Sbjct: 205 APIDTLAVLRM----DGDLYESTWDTLTNLYPKVSVGGYVIVDDYMMCP 249
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 35.4 bits (80), Expect = 0.026
Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF-----------VYGCDFS 142
++ L D T I +G G G I++ + N +Y + +
Sbjct: 396 VVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN 455
Query: 143 ENAVNILKEH-EEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF--VLDAINPNKMQ 199
NA+ LK R D+ + +I +L + N++
Sbjct: 456 PNAIVTLKYMNVRTWKRRVTIIESDM--RSLPGIAKDRGFEQPDIIVSELLGSFGDNELS 513
Query: 200 -HVINQVYKYLKPGGMVL 216
++ V +LKP + +
Sbjct: 514 PECLDGVTGFLKPTTISI 531
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.034
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 20/67 (29%)
Query: 32 QWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDAFY---------NVHQNR--- 79
+W EEQ ++ ++L K + Q E K+ + + N NR
Sbjct: 89 KWREEQRKRLQELDAA------SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 80 --FFKDR 84
F++
Sbjct: 143 KAFYQQP 149
Score = 29.0 bits (64), Expect = 1.7
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 32 QWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDV 65
+W++ Q +Q K NN DK Q + D+
Sbjct: 122 EWNQRQSEQVEKNKINN--RIADKAFYQQPDADI 153
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 34.0 bits (77), Expect = 0.051
Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 22/164 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC---HAFVCDV 167
+++G G G +++ + + N F G D + + + + KP + +
Sbjct: 28 HIDLGTGDGRNIYKLAI--NDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA 85
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKM---QHVINQVYKYLKPGGMVLFR--DYGR 222
+E D + ++F + + + +++ V K F
Sbjct: 86 AAESLPFELKNI-ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS 144
Query: 223 YDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
Y+ +++ + L ++ E+ K ++GF
Sbjct: 145 YEEAEIKKRGLPLLSKAYFL-----------SEQYKAELSNSGF 177
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 34.0 bits (77), Expect = 0.066
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-----YK 156
D +LE G G G + + + V + ++ ++ K++ + +K
Sbjct: 100 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWK 158
Query: 157 PDRCHAFVCDVTS-----EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211
+ +V + D LD +NP + Y +LK
Sbjct: 159 LSHVEEWPDNVDFIHKDISGATEDIKSLTFD----AVALDMLNP---HVTLPVFYPHLKH 211
Query: 212 GGMVLF 217
GG+
Sbjct: 212 GGVCAV 217
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 33.2 bits (77), Expect = 0.087
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 33/133 (24%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCD-- 166
IL++G G G + + + D +AV++ + + + H D
Sbjct: 112 RILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF 169
Query: 167 --VTSEDW-----NPPFAPESLDIVLLIFV---------------LDAINPNKMQHVINQ 204
+ + + NPP+ E D L + I H+I Q
Sbjct: 170 SALAGQQFAMIVSNPPYIDEQ-DPHLQQGDVRFEPLTALVAADSGMADI-----VHIIEQ 223
Query: 205 VYKYLKPGGMVLF 217
L GG +L
Sbjct: 224 SRNALVSGGFLLL 236
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.4 bits (76), Expect = 0.097
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAF 163
+ ++++ G+G+ PI V + L E+ DR A+
Sbjct: 124 KPDELVVDMFAGIGHLSLPI---AVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180
Query: 164 VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
D D +L+ + + I + K G ++
Sbjct: 181 NMDNRDFPGENIA-----DRILMGY------VVRTHEFIPKALSIAKDGAII 221
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 33.3 bits (76), Expect = 0.099
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 26/129 (20%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAV-----NILKEHEEYKPDRCHAF 163
I ++G G G + + + V + S+ ++ R
Sbjct: 38 CRIADLGAGAG--AAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 164 VCDVT---SEDWNPPFAPESLDIVL----LIFVLDAINPNKMQH------------VINQ 204
DVT E V+ D P+ ++ I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT 155
Query: 205 VYKYLKPGG 213
+ GG
Sbjct: 156 ASAIMVSGG 164
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 33.6 bits (76), Expect = 0.10
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 108 TKNILEIGCGVGNSVFPIVEHC-KNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVC 165
K +L++GCG G + + +Y + S A + + DR
Sbjct: 159 DKIVLDVGCGSG----ILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPG 214
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
E+ + PE +DI++ + + +M KYLKP G +
Sbjct: 215 K--VEEVSL---PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 32.6 bits (75), Expect = 0.11
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 27/136 (19%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAV-NILKEHEEYKPDRCHAFVCDVTS 169
+E+G G G V + + + N ++ G D ++ + L + E D
Sbjct: 45 HVEVGSGKGAFVSGMAKQNPDIN-YI-GIDIQKSVLSYALDKVLEVGVPNIKLLWVDG-- 100
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPN---KMQHV---------INQVYKYLKPGGMVLF 217
D F +D + L F + K +H ++ + L G + F
Sbjct: 101 SDLTDYFEDGEIDRLYLNF------SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154
Query: 218 ----RDYGRYDLVQLR 229
R Y LV
Sbjct: 155 KTDNRGLFEYSLVSFS 170
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 32.6 bits (75), Expect = 0.11
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 27/136 (19%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAV-NILKEHEEYKPDRCHAFVCDVTS 169
+E+G G G + + + + N ++ G + ++ + +++ ++ + D
Sbjct: 42 HIEVGTGKGQFISGMAKQNPDIN-YI-GIELFKSVIVTAVQKVKDSEAQNVKLLNIDA-- 97
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPN---KMQHV---------INQVYKYLKPGGMVLF 217
+ F P + V L F + K +H + + + + GG + F
Sbjct: 98 DTLTDVFEPGEVKRVYLNF------SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151
Query: 218 ----RDYGRYDLVQLR 229
R Y L
Sbjct: 152 KTDNRGLFEYSLKSFS 167
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 32.7 bits (74), Expect = 0.14
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L +G G +V + + D + VY +FS + L + + + D
Sbjct: 81 VLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRT-NIIPVIEDAR-- 136
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
+P + +V +IF D P++ + V + +L+ GG +
Sbjct: 137 --HPHKYRMLIAMVDVIF-ADVAQPDQTRIVALNAHTFLRNGGHFVI 180
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 32.7 bits (74), Expect = 0.14
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 108 TKNILEIGCGVGNSVFPIVEHC-KNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVC 165
K +L++GCG G + + +Y + S A + + DR
Sbjct: 51 DKIVLDVGCGSG----ILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPG 106
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
E+ + PE +DI++ + + +M KYLKP G +
Sbjct: 107 K--VEEVSL---PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 32.3 bits (74), Expect = 0.17
Identities = 29/137 (21%), Positives = 41/137 (29%), Gaps = 28/137 (20%)
Query: 111 ILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAV-NILKEHEEYKPDRCHAFVCDVT 168
LEIG G+G S +V K+ G + V L E D
Sbjct: 38 TLEIGFGMGAS---LVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAV 94
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINP---NKMQHV---------INQVYKYLKPGGMVL 216
E + SL +V L F P +K +H V L+ GG+
Sbjct: 95 -EVLHKMIPDNSLRMVQLFF------PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFH 147
Query: 217 F----RDYGRYDLVQLR 229
Y + L +
Sbjct: 148 MATDWEPYAEHMLEVMS 164
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 32.3 bits (74), Expect = 0.20
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 77 QNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136
Q+ K+ L +II +D +LEIGCG GN ++ K V
Sbjct: 22 QH-LLKNPGIL----DKIIYAAKIKSSDI-----VLEIGCGTGNLTVKLLPLAKK----V 67
Query: 137 YGCDFSENAVNILKEHEEYKP 157
D ++ +K+ Y+
Sbjct: 68 ITIDIDSRMISEVKKRCLYEG 88
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 32.3 bits (73), Expect = 0.20
Identities = 14/110 (12%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
+ ++++ G+G P+ ++ K VY + + A + L E+ + +
Sbjct: 118 NENEVVVDMFAGIGYFTIPLAKYSKPK--LVYAIEKNPTAYHYLCENIKLNKLNNVIPIL 175
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
+ A +++ +K +++ +++LK G++
Sbjct: 176 ADNRDVELKDVAD---RVIMGY-------VHKTHKFLDKTFEFLKDRGVI 215
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 32.5 bits (73), Expect = 0.21
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 57 LIQTLNEDVAKNWDAFYNVHQ--NRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEI 114
++ + + V+ + FYN NR + L + +
Sbjct: 12 IVPEIPKTVSSDMPVFYNPRMRVNR------------DLAVLGLEYLCKKLGRPVKVADP 59
Query: 115 GCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
G + Y D S A+ I+KE+ + +
Sbjct: 60 LSASGIRAIRFLLETSCVE-KAYANDISSKAIEIMKENFKLNNIPEDRYEI 109
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 31.8 bits (72), Expect = 0.25
Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
+ +IG G + N +F + + + ++++ + A +
Sbjct: 43 VMWDIGAGSASVSIEASNLMPNGRIFAL--ERNPQYLGFIRDN----LKKFVARNVTLVE 96
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
P + L +F+ + ++ +I+ V + LK G++
Sbjct: 97 AFA--PEGLDDLPDPDRVFI--GGSGGMLEEIIDAVDRRLKSEGVI 138
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 31.7 bits (72), Expect = 0.28
Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 21/127 (16%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
I+++ G G + K + G + E ++ K Y + +
Sbjct: 51 GKIIDLCSGNGIIPLLLSTRTKAK---IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD 107
Query: 169 SEDWNPPFAPESLDIVL------LIFVLDAINPNKM------------QHVINQVYKYLK 210
+ E DIV N N+ + I LK
Sbjct: 108 LKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK 167
Query: 211 PGGMVLF 217
GG F
Sbjct: 168 QGGKANF 174
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 31.6 bits (72), Expect = 0.35
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 92 TEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK---NDNVFVYGCDFSENAVNI 148
++E + K + +IL+ CG N + ++ + + +V G D + +++
Sbjct: 119 AYLLEKVIQKKKN----VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISL 174
Query: 149 LK---EHEEYKPDRCHAFVCDVTSEDW---------NPPFAPESLDIVLLIFVLDAINPN 196
+ + K H D + + P D F L +
Sbjct: 175 ALVGADLQRQKMTLLHQ---DGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGH 231
Query: 197 KMQHV--INQVYKYLKPGG 213
H I Q +Y KPGG
Sbjct: 232 SFAHFLFIEQGMRYTKPGG 250
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic
protein structure initiative, PSI, natPro; HET: MSE SAH
GLU; 1.55A {Micromonospora echinospora}
Length = 257
Score = 31.1 bits (69), Expect = 0.42
Identities = 10/82 (12%), Positives = 30/82 (36%)
Query: 140 DFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQ 199
+ + ++ + + + + + + + P + E+ V+ + D +
Sbjct: 138 AYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTK 197
Query: 200 HVINQVYKYLKPGGMVLFRDYG 221
V+ + YL G +V F +
Sbjct: 198 AVLEAIRPYLTKGSIVAFDELD 219
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 31.2 bits (70), Expect = 0.45
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDV 167
K +L++GCG G + V G D SE + D
Sbjct: 66 KVVLDVGCGTGILSMFAAKAGAKK---VLGVDQSEILYQAMDIIRLNKLEDTITLIKGK- 121
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
E+ + P + I+ + + + V+ KYL GG V
Sbjct: 122 -IEEVHLPVEKVDV-IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 30.8 bits (70), Expect = 0.49
Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 38/175 (21%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDN-----VFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
+IGCG G + + + + V D+ ++ + L+
Sbjct: 50 FADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRS 109
Query: 166 DVTS--EDWNPPFAPESLDIVLLIFVLDAINPN---KMQH---------VINQVYKYLKP 211
+ ++ F L + +F P+ K ++ + L+
Sbjct: 110 NAMKHLPNF---FYKGQLTKMFFLF------PDPHFKRTKHKWRIISPTLLAEYAYVLRV 160
Query: 212 GGMVLF----RDYGRYDLVQLR----FKKGRCLQDNFYARGDGTLVYFFTREEVK 258
GG+V + + F+ R ++ + T E K
Sbjct: 161 GGLVYTITDVLELHDWMCTHFEEHPLFE--RVPLEDLSEDPVVGHLGTSTEEGKK 213
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 30.9 bits (71), Expect = 0.49
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 77 QNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136
QN F +H + +I+ + + D NI EIG G G+ +V+ C V
Sbjct: 10 QN-FITSKHNI----DKIMTNIRLNEHD-----NIFEIGSGKGHFTLELVQRCN--FVTA 57
Query: 137 YGCDFSENAVNILKEH 152
D +
Sbjct: 58 IEID--HKLCKTTENK 71
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 30.8 bits (69), Expect = 0.51
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L +G G + + + + ++G +FS + L E + + D T
Sbjct: 77 VLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERR-NIVPILGDATKP 134
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
+ +D++ D P + + +I+ YLK GG +
Sbjct: 135 E-EYRALVPKVDVIFE----DVAQPTQAKILIDNAEVYLKRGGYGMI 176
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 30.7 bits (69), Expect = 0.61
Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 18/166 (10%)
Query: 112 LEIGCGVGNS--VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
L++G G+ + + D VY D V K F DV
Sbjct: 82 LDLGSGLPTVQNTHEVAQSVNPDARVVY-VDIDP-MVLTHGRALLAKDPNTAVFTADVRD 139
Query: 170 ED--WNPPFAPESLD-----IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
+ N P +D ++L+ +L ++P+ + V+ L PG +
Sbjct: 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199
Query: 223 YDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
+ G + T EE++ F VE
Sbjct: 200 ------TGLPAQQKLARITRENLGEG-WARTPEEIERQFGDFELVE 238
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 30.7 bits (69), Expect = 0.62
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 16/136 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYK-PDRCHAFVCDVT 168
+++ CGVG + V D + + + + E Y D+ D
Sbjct: 82 VVDAFCGVGGNTIQFALTGM----RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL 137
Query: 169 S------EDW---NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
D +PP+ + ++P+ + K L R+
Sbjct: 138 LLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD-GFEIFRLSKKITNNIVYFLPRN 196
Query: 220 YGRYDLVQLRFKKGRC 235
+ L G+
Sbjct: 197 ADIDQVASLAGPGGQV 212
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 30.7 bits (70), Expect = 0.72
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 77 QNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136
Q F D++++ + +E + TK D +LEIG G G + ++ K V
Sbjct: 30 QC-FLIDKNFV----NKAVESANLTKDD-----VVLEIGLGKGILTEELAKNAKK----V 75
Query: 137 YGCDFSENAVNILKEHEEYKP 157
Y + ++ + +E
Sbjct: 76 YVIEIDKSLEPYANKLKELYN 96
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 30.3 bits (67), Expect = 0.95
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
+TK++L +G G V P ++ + + V + + L
Sbjct: 2 ATKSVLMLGSGFVTR---PTLDVLTDSGIKVTVACRTLESAKKLSAG----VQHSTPISL 54
Query: 166 DVTSED 171
DV +
Sbjct: 55 DVNDDA 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 149 LKEHEE----YKPDRCHAFVCDVTSE 170
LK+ + Y D A T E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCD 166
++++ GVG K +Y D + +A+ +LK++ + + + D
Sbjct: 197 DVVVDMFAGVGPFSIACKNAKK-----IYAIDINPHAIELLKKNIKLNKLEHKIIPILSD 251
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
V + V++ P I++ ++ GG++
Sbjct: 252 VREV-------DVKGNRVIM------NLPKFAHKFIDKALDIVEEGGVI 287
>1x5p_A Negative elongation factor E; structure genomics, RRM domain,
PARP14, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 97
Score = 28.0 bits (63), Expect = 1.3
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 129 CKNDNVFVYGCDFSENAVNILKEH-EEY--------KPDRCHAFVCDVTSED 171
K + ++VYG D + +L+ + P R AFV E
Sbjct: 13 RKGNTLYVYGEDMTP---TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMES 61
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 29.6 bits (66), Expect = 1.5
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 109 KNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDV 167
K +L++G G G +F K V G + S + +K + K D +
Sbjct: 68 KVVLDVGSGTGILCMFA----AKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKG- 122
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
E+ P + I+ + + V++ K+L P G++
Sbjct: 123 KVEEVELPVEKVDI-IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170
>3afv_A DYP; DYE-decolorizing peroxidase, beta barrel, oxidoreductas
aspartic acid; HET: HEM NAG; 1.40A {Bjerkandera adusta}
PDB: 2d3q_A* 3mm2_A* 3mm3_A* 3mm1_A*
Length = 442
Score = 29.4 bits (65), Expect = 1.8
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221
W PF ++ V LI + + + + + + G
Sbjct: 106 SQWVAPFTGTTIHGVFLIG---SDQDDFLDQFTDDISSTFGSSITQVQALSG 154
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 29.6 bits (67), Expect = 1.9
Identities = 14/61 (22%), Positives = 20/61 (32%)
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
H D +YG + R H +TSE+ + F P S + L
Sbjct: 410 HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 469
Query: 188 F 188
F
Sbjct: 470 F 470
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 29.1 bits (66), Expect = 2.3
Identities = 14/61 (22%), Positives = 20/61 (32%)
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
H D +YG + R H +TSE+ + F P S + L
Sbjct: 394 HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 453
Query: 188 F 188
F
Sbjct: 454 F 454
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 28.9 bits (64), Expect = 2.4
Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153
+ + + +D + + ++IG G + + + + + N K++
Sbjct: 52 VEDLIGHQDSDKSTLRRGIDIGTGAS--CIYPLLGATLNGWYFLATEVDDMCFNYAKKNV 109
Query: 154 EYKPDRCHAFVCDVTSEDW------------------NPPFAPESLDIVLLIFVLDAINP 195
E V V + NPPF L+ + + P
Sbjct: 110 EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSR-NPRRP 168
Query: 196 NKMQHVINQVYKYLKPGGMVLF 217
+ + + GG + F
Sbjct: 169 PPSSVNTGGITEIMAEGGELEF 190
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 28.7 bits (65), Expect = 2.4
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 77 QNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136
QN F L +II+ L+ +TD + EIG G G+ + + K V
Sbjct: 9 QN-FLTSEKVL----NQIIKQLNLKETD-----TVYEIGTGKGHLTTKLAKISK--QVTS 56
Query: 137 YGCDFSENAVNILKEH 152
D + N+ E
Sbjct: 57 IELD--SHLFNLSSEK 70
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport,
transmembrane, inner membrane, membrane struc membrane
protein, membrane; 3.45A {Escherichia coli} SCOP:
b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Length = 286
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
RVW + Y V E +K F++AG
Sbjct: 238 RVWSNSGDLQNVYWDVLERIKREFDAAGI 266
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.5 bits (63), Expect = 3.3
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+LE C G + E G + A+++ E D F+
Sbjct: 39 RGGRVLEPACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDLPPWAEGILAD----FLLW 93
Query: 167 VTSEDW-----NPPF 176
E + NPP+
Sbjct: 94 EPGEAFDLILGNPPY 108
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 28.0 bits (63), Expect = 3.8
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 139 CDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
D EN + + DVT
Sbjct: 36 LDRVENPTALAELKAINPKVNITFHTYDVTVP 67
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 27.3 bits (61), Expect = 4.1
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 109 KNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDV 167
K IG G G S+ V+ V D +E V Y HA + +
Sbjct: 7 KQFAVIGLGRFGGSI---VKELHRMGHEVLAVDINEEKV------NAYASYATHAVIANA 57
Query: 168 TSED 171
T E+
Sbjct: 58 TEEN 61
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 28.0 bits (63), Expect = 4.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 133 NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED 171
+ VYG SE LK+ +E DR V D+T +
Sbjct: 28 DTVVYGVARSEAP---LKKLKEKYGDRFFYVVGDITEDS 63
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 27.9 bits (63), Expect = 5.5
Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 56/161 (34%)
Query: 92 TEII--EPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHC------KNDNVFVYGCDFSE 143
TE + L + K + +IG G G K + V+ D S
Sbjct: 108 TEELVELALELIRKY--GIKTVADIGTGSG---------AIGVSVAKFSDAIVFATDVSS 156
Query: 144 NAVNILKEH-EEYK-PDRCHAFVCDVTSE--------DW---NPPFAPESLDIVLLIFV- 189
AV I +++ E + DR + + NPP+ L V
Sbjct: 157 KAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKS--SAHLPKDVL 214
Query: 190 -------------LDAINPNKMQHVINQVYKYLKPGGMVLF 217
LD + + Y G +VL
Sbjct: 215 FEPPEALFGGEDGLDFY-----REFFGR---YDTSGKIVLM 247
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical
protein, regulatory protei apoptosis, cancer; NMR {Homo
sapiens}
Length = 171
Score = 27.2 bits (60), Expect = 5.7
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 52 QIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWL 87
I+K + LNE +D N KD +L
Sbjct: 15 FINKAGCECLNESDEHGFD-------NCLRKDTTFL 43
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 27.5 bits (62), Expect = 5.8
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 136 VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED 171
++ C +E +N + K + VCD +
Sbjct: 41 IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 27.7 bits (62), Expect = 5.9
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 77 QNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130
Q+ K+ + II+ + TD +LE+G G GN ++E K
Sbjct: 8 QH-ILKNPLII----NSIIDKAALRPTDV-----VLEVGPGTGNMTVKLLEKAK 51
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for
structural genomics, JCSG, protein structure initiative
oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia
xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Length = 117
Score = 26.7 bits (59), Expect = 6.2
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 18 EDSNVFQHNAWD-HVQWDEEQEQQARKLVE 46
+ +W HV +D A L E
Sbjct: 3 TFRDTSAIASWHAHVYFDASSRDAAWTLRE 32
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 27.1 bits (61), Expect = 7.5
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 136 VYGCDFSENAVN-ILKEHEEYKPDRCHAFVCDVTSED 171
V D+ E + + + R A VCDVTS +
Sbjct: 50 VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTE 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,474,763
Number of extensions: 319632
Number of successful extensions: 1295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 169
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)