BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11743
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/305 (66%), Positives = 237/305 (77%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ K PE TV LK++Y+ KLLPLE+ Y F FHSP EDADFD KP
Sbjct: 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPM 67
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+VP +
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + + VL+ ISI+DTPGILSG KQRV RGYDF VL WFAE
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAE 187
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVD IILLFDAHKL+ISDEF +I ALRGH+DKIR+VLNKADMV+ QQLMRVYGALMW+L
Sbjct: 188 RVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GKV+ TPEV RVYIGSFW QPL+ NRRLFE EEQDLF+D+Q LPR+AALRKLNDL+KR
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKR 307
Query: 291 ARLAK 295
ARL +
Sbjct: 308 ARLVR 312
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 93/124 (75%), Gaps = 4/124 (3%)
Query: 299 EDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP 358
EDADFD KP V++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+VP
Sbjct: 58 EDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVP 117
Query: 359 GNALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPVLKG-KVLQTPEV---ARVYIGSFWD 414
GNALVVDP+K FR L+ FGN+FLNRF C+ + + VL+ ++ TP + A+ + +D
Sbjct: 118 GNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYD 177
Query: 415 QPLV 418
P V
Sbjct: 178 FPAV 181
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 92/181 (50%), Gaps = 52/181 (28%)
Query: 396 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFE-------------------------DRS 430
GKV+ TPEV RVYIGSFW QPL+ NRRLFE +
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKR 307
Query: 431 STSNSVQAYIISALRKDMPSVFXXXXXXXXXXXXXXXXXXQIQREYQISPVFGXXXXXXX 490
+ V AYIIS L+K+MP+VF + Q ++ +F
Sbjct: 308 ARLVRVHAYIISYLKKEMPTVF-------------GKENKKKQLILKLPVIFA------- 347
Query: 491 XXXXXXXQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRLIEVADKMLAEDIAHL 550
+IQ E+ ISPGDFP +KMQELL HDFTKF +L+P+L+E D MLA+DIA L
Sbjct: 348 -------KIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKL 400
Query: 551 L 551
+
Sbjct: 401 M 401
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P F + +D + +
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT----AG 70
Query: 112 LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
L+KFG + + QC+++ V I+ + P
Sbjct: 71 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP 104
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPF-- 109
++LVG TGKTTF++ L +F G+ + P +++ G + F
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 110 ---SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
+ L+KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P F + +D + +
Sbjct: 8 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT----AG 63
Query: 112 LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
L+KFG + + QC+++ V I+ + P
Sbjct: 64 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP 97
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P F + +D + +
Sbjct: 7 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT----AG 62
Query: 112 LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
L+KFG + + QC+++ V I+ + P
Sbjct: 63 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP 96
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP 102
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLD---- 113
++LVG TGKTTF++ L +F ++ PT + +++ G + F+ D
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYV---PTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 114 -KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
KFG + + + QC+++ V ++ + P
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPF-- 109
++LVG TGKTTF++ L +F G+ + P +++ G + F
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 65
Query: 110 ---SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
+ L+KFG + + + QC+++ V ++ + P
Sbjct: 66 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 104
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPF-- 109
++LVG TGKTTF++ L +F G+ + P +++ G + F
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 59
Query: 110 ---SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
+ L+KFG + + + QC+++ V ++ + P
Sbjct: 60 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 98
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 68
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 107
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLD----- 113
++LVG TGKTTF++ L +F ++ P + V + R G + F+ D
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYV-PTLGVEVHPLVFHTNR-GPIKFNVWDTAGQE 70
Query: 114 KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
KFG + + + QC+++ V ++ + P
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 56
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 57 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 95
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|4GME|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
pdb|4GME|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
Length = 426
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 227 MWSLGKVLQTP----EVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQ 273
+WS K L + E AR +G WD L+HDV+ RL E L KDL+
Sbjct: 204 IWSTAKYLNSVPKLFERAREVLG--WDVHLLHDVHHRLTPIEAARLGKDLE 252
>pdb|3VCN|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
pdb|3VCN|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
Length = 425
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 227 MWSLGKVLQTP----EVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQ 273
+WS K L + E AR +G WD L+HDV+ RL E L KDL+
Sbjct: 203 IWSTAKYLNSVPKLFERAREVLG--WDVHLLHDVHHRLTPIEAARLGKDLE 251
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP-------GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L +F G+ + P +++ G + F+
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 63
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D K+G + + + QC+++ V ++ + P
Sbjct: 64 WDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 59 VMLVGQYSTGKTTFIRYLL----ERDFP---GIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
++LVG TGKTTF++ L E+ + G+ + P +++ G + F+
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHP---------LVFHTNRGPIKFNV 68
Query: 112 LD-----KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTP 145
D KFG + + + QC+++ V ++ + P
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 107
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 56 KPTVMLVGQYST-----GKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER------- 103
+P ML+ + S G + Y E FPGI GP D I D R
Sbjct: 127 RPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVDDIIC---DSRYSDIEPS 183
Query: 104 -EGSVPFSPLDKFGKFGNSFLNRFQ 127
EG V F LD K + + R Q
Sbjct: 184 TEGEVIFRALDPAFKIEDPYSPRIQ 208
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 253 VHDVNRRLFEDE-EQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVML 311
+ +V ++ EDE E +++ D + +PR L+K+ ++ + + F+ P + +
Sbjct: 11 IPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRI 70
Query: 312 VGQYSTG 318
V Y+ G
Sbjct: 71 VANYAVG 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,445,360
Number of Sequences: 62578
Number of extensions: 720435
Number of successful extensions: 1922
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1889
Number of HSP's gapped (non-prelim): 49
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)