Query psy11743
Match_columns 551
No_of_seqs 595 out of 3933
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:47:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954|consensus 100.0 3.2E-67 7E-72 511.8 30.6 384 1-551 1-394 (532)
2 COG1160 Predicted GTPases [Gen 100.0 3.3E-54 7.1E-59 439.3 22.7 330 56-477 3-358 (444)
3 PRK03003 GTP-binding protein D 100.0 1.5E-34 3.3E-39 311.2 30.2 328 55-476 37-388 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 8.3E-35 1.8E-39 311.1 24.8 326 58-476 1-350 (429)
5 PRK00093 GTP-binding protein D 100.0 1.6E-34 3.5E-39 309.4 25.9 325 57-476 2-350 (435)
6 PRK09518 bifunctional cytidyla 100.0 1.4E-33 3E-38 317.3 29.4 330 55-476 274-627 (712)
7 COG1160 Predicted GTPases [Gen 100.0 2.4E-28 5.1E-33 250.0 20.0 242 55-343 177-438 (444)
8 KOG1954|consensus 99.9 5.3E-25 1.2E-29 216.2 17.7 227 293-536 45-364 (532)
9 COG1159 Era GTPase [General fu 99.9 9.1E-25 2E-29 212.5 17.7 155 55-252 5-160 (298)
10 PRK03003 GTP-binding protein D 99.9 2.8E-23 6.2E-28 223.9 22.3 237 55-341 210-465 (472)
11 PRK00093 GTP-binding protein D 99.9 8.8E-23 1.9E-27 218.7 22.8 239 55-341 172-429 (435)
12 TIGR03594 GTPase_EngA ribosome 99.9 9.6E-23 2.1E-27 218.1 22.7 236 55-338 171-426 (429)
13 PRK09518 bifunctional cytidyla 99.9 1.1E-21 2.4E-26 221.1 22.7 237 55-341 449-704 (712)
14 cd01858 NGP_1 NGP-1. Autoanti 99.8 8.2E-20 1.8E-24 168.1 14.1 154 165-363 2-157 (157)
15 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-20 3.5E-25 170.4 8.6 146 58-252 2-149 (156)
16 KOG1424|consensus 99.8 1.6E-19 3.4E-24 185.6 16.0 207 155-377 158-383 (562)
17 TIGR00436 era GTP-binding prot 99.8 5.9E-19 1.3E-23 177.0 17.8 151 58-252 2-152 (270)
18 COG0486 ThdF Predicted GTPase 99.8 1.6E-18 3.5E-23 178.4 15.3 150 54-252 215-364 (454)
19 PRK00089 era GTPase Era; Revie 99.8 6.5E-18 1.4E-22 171.5 18.4 154 56-252 5-159 (292)
20 COG0218 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 154.9 17.4 159 54-252 22-185 (200)
21 PRK09563 rbgA GTPase YlqF; Rev 99.8 6.9E-18 1.5E-22 170.4 14.7 167 161-367 14-180 (287)
22 TIGR03596 GTPase_YlqF ribosome 99.8 5.9E-18 1.3E-22 170.0 13.6 167 161-367 11-177 (276)
23 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 1.3E-17 2.8E-22 150.7 14.5 138 162-366 2-141 (141)
24 cd01849 YlqF_related_GTPase Yl 99.8 1.2E-17 2.7E-22 153.3 14.3 154 173-363 1-155 (155)
25 PRK15494 era GTPase Era; Provi 99.7 3.4E-17 7.3E-22 169.1 18.1 152 57-252 53-204 (339)
26 TIGR03598 GTPase_YsxC ribosome 99.7 7.4E-17 1.6E-21 151.7 18.2 159 54-252 16-178 (179)
27 PRK12289 GTPase RsgA; Reviewed 99.7 2.8E-17 6.2E-22 169.0 16.3 149 165-368 83-239 (352)
28 PRK09866 hypothetical protein; 99.7 9.7E-17 2.1E-21 171.0 19.7 110 132-252 225-341 (741)
29 cd01855 YqeH YqeH. YqeH is an 99.7 1.8E-17 3.8E-22 157.5 12.5 160 161-363 24-190 (190)
30 cd04178 Nucleostemin_like Nucl 99.7 5.8E-17 1.3E-21 150.9 14.8 168 173-363 1-172 (172)
31 cd04171 SelB SelB subfamily. 99.7 1.5E-16 3.3E-21 146.3 16.4 147 58-252 2-154 (164)
32 TIGR00157 ribosome small subun 99.7 1.1E-16 2.5E-21 157.6 15.6 154 162-370 27-188 (245)
33 PRK12298 obgE GTPase CgtA; Rev 99.7 1.9E-16 4.1E-21 165.6 17.9 154 57-252 160-321 (390)
34 cd01895 EngA2 EngA2 subfamily. 99.7 3.7E-16 8.1E-21 144.7 17.9 158 56-252 2-163 (174)
35 cd04163 Era Era subfamily. Er 99.7 3.2E-16 6.9E-21 143.8 17.0 154 56-252 3-157 (168)
36 cd01894 EngA1 EngA1 subfamily. 99.7 1.5E-16 3.3E-21 145.1 14.0 146 60-252 1-146 (157)
37 COG1161 Predicted GTPases [Gen 99.7 9.4E-17 2E-21 164.1 13.8 181 140-369 13-193 (322)
38 cd01859 MJ1464 MJ1464. This f 99.7 2.1E-16 4.6E-21 145.2 14.8 155 161-363 2-156 (156)
39 cd01898 Obg Obg subfamily. Th 99.7 4E-16 8.6E-21 144.8 16.2 152 58-252 2-159 (170)
40 PF00009 GTP_EFTU: Elongation 99.7 4.9E-16 1.1E-20 147.3 15.8 169 56-252 3-175 (188)
41 TIGR03156 GTP_HflX GTP-binding 99.7 3.8E-16 8.2E-21 161.5 15.5 150 55-252 188-340 (351)
42 cd00881 GTP_translation_factor 99.7 1.2E-15 2.7E-20 143.7 17.1 165 58-252 1-175 (189)
43 KOG2484|consensus 99.7 2.5E-16 5.5E-21 157.8 12.4 172 161-367 136-311 (435)
44 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.4E-15 3E-20 140.7 16.5 152 57-252 1-154 (168)
45 PF01926 MMR_HSR1: 50S ribosom 99.7 2.7E-16 5.9E-21 136.9 11.0 116 58-210 1-116 (116)
46 cd01884 EF_Tu EF-Tu subfamily. 99.7 7.8E-16 1.7E-20 146.5 14.8 102 137-252 65-171 (195)
47 TIGR00436 era GTP-binding prot 99.7 5.9E-17 1.3E-21 162.5 7.3 184 308-550 2-203 (270)
48 PRK12299 obgE GTPase CgtA; Rev 99.7 1.3E-15 2.8E-20 156.3 17.3 155 55-252 157-316 (335)
49 cd01897 NOG NOG1 is a nucleola 99.7 2E-15 4.2E-20 139.9 16.9 151 57-252 1-156 (168)
50 cd01891 TypA_BipA TypA (tyrosi 99.7 4.6E-15 1E-19 141.3 18.7 104 137-252 65-170 (194)
51 cd01856 YlqF YlqF. Proteins o 99.7 1.5E-15 3.4E-20 141.7 15.0 163 161-364 9-171 (171)
52 KOG1423|consensus 99.7 8.8E-16 1.9E-20 148.8 12.9 130 54-217 70-201 (379)
53 cd01889 SelB_euk SelB subfamil 99.7 1.7E-15 3.8E-20 144.0 14.9 104 137-252 68-174 (192)
54 TIGR02729 Obg_CgtA Obg family 99.7 2.8E-15 6.1E-20 153.7 17.3 154 55-252 156-317 (329)
55 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.9E-15 4.1E-20 145.7 14.7 171 58-253 1-183 (208)
56 COG1084 Predicted GTPase [Gene 99.6 2.9E-15 6.2E-20 147.5 15.7 165 14-222 132-301 (346)
57 PF00350 Dynamin_N: Dynamin fa 99.6 8E-16 1.7E-20 142.8 11.1 143 59-211 1-168 (168)
58 cd04138 H_N_K_Ras_like H-Ras/N 99.6 3.6E-15 7.7E-20 136.8 15.2 144 57-252 2-150 (162)
59 PRK12296 obgE GTPase CgtA; Rev 99.6 4.9E-15 1.1E-19 157.7 17.6 153 55-252 158-328 (500)
60 PRK05291 trmE tRNA modificatio 99.6 3.4E-15 7.4E-20 159.7 16.4 145 55-252 214-358 (449)
61 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.8E-15 8.1E-20 135.8 14.3 144 57-252 2-145 (157)
62 PRK00454 engB GTP-binding prot 99.6 9E-15 1.9E-19 139.2 17.4 157 54-252 22-182 (196)
63 PRK04213 GTP-binding protein; 99.6 9.2E-15 2E-19 139.9 17.3 157 55-252 8-180 (201)
64 PRK12288 GTPase RsgA; Reviewed 99.6 3.2E-15 7E-20 153.9 14.9 147 168-369 117-273 (347)
65 PRK00098 GTPase RsgA; Reviewed 99.6 4.1E-15 8.8E-20 151.0 15.4 148 168-369 77-232 (298)
66 PF02421 FeoB_N: Ferrous iron 99.6 3.9E-16 8.5E-21 141.7 7.1 136 307-465 1-156 (156)
67 cd04136 Rap_like Rap-like subf 99.6 3.7E-15 8.1E-20 137.1 13.3 144 57-252 2-151 (163)
68 cd04145 M_R_Ras_like M-Ras/R-R 99.6 7.4E-15 1.6E-19 135.3 14.9 145 57-252 3-152 (164)
69 cd01878 HflX HflX subfamily. 99.6 8.6E-15 1.9E-19 140.5 15.6 151 55-252 40-193 (204)
70 cd04160 Arfrp1 Arfrp1 subfamil 99.6 6.4E-15 1.4E-19 136.3 14.2 150 58-252 1-157 (167)
71 cd01890 LepA LepA subfamily. 99.6 1E-14 2.2E-19 136.6 15.8 99 137-252 67-165 (179)
72 PRK13796 GTPase YqeH; Provisio 99.6 6.8E-15 1.5E-19 153.3 15.9 159 161-367 59-224 (365)
73 KOG1191|consensus 99.6 6.5E-16 1.4E-20 158.6 8.0 84 304-394 266-352 (531)
74 TIGR03597 GTPase_YqeH ribosome 99.6 4.4E-15 9.5E-20 154.5 14.3 160 160-367 52-218 (360)
75 cd04140 ARHI_like ARHI subfami 99.6 6E-15 1.3E-19 136.6 13.5 144 57-252 2-153 (165)
76 cd04156 ARLTS1 ARLTS1 subfamil 99.6 8.7E-15 1.9E-19 134.4 14.5 145 58-252 1-150 (160)
77 PRK15494 era GTPase Era; Provi 99.6 9.3E-16 2E-20 158.4 8.5 186 305-550 51-255 (339)
78 cd04124 RabL2 RabL2 subfamily. 99.6 1.3E-14 2.9E-19 133.8 15.3 143 57-252 1-146 (161)
79 cd04154 Arl2 Arl2 subfamily. 99.6 1E-14 2.2E-19 136.2 14.6 146 55-252 13-163 (173)
80 PRK11058 GTPase HflX; Provisio 99.6 8.2E-15 1.8E-19 155.1 15.6 151 55-252 196-350 (426)
81 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 7E-15 1.5E-19 136.1 13.3 143 57-252 3-152 (166)
82 PRK12297 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.7E-19 151.8 17.7 149 57-252 159-315 (424)
83 smart00173 RAS Ras subfamily o 99.6 7.9E-15 1.7E-19 135.3 13.5 143 58-252 2-150 (164)
84 cd01864 Rab19 Rab19 subfamily. 99.6 8.4E-15 1.8E-19 135.5 13.7 145 56-252 3-154 (165)
85 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.5E-14 3.2E-19 140.7 15.6 115 137-276 84-222 (224)
86 cd01865 Rab3 Rab3 subfamily. 99.6 9.7E-15 2.1E-19 135.2 13.6 143 57-252 2-151 (165)
87 COG1159 Era GTPase [General fu 99.6 2.4E-15 5.2E-20 146.9 9.5 196 306-550 6-211 (298)
88 cd01881 Obg_like The Obg-like 99.6 8.2E-15 1.8E-19 136.5 12.8 149 61-252 1-165 (176)
89 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.5E-14 5.4E-19 152.3 18.0 125 54-216 201-325 (442)
90 cd04157 Arl6 Arl6 subfamily. 99.6 1.8E-14 3.8E-19 132.5 14.5 144 58-252 1-152 (162)
91 cd01861 Rab6 Rab6 subfamily. 99.6 1.5E-14 3.3E-19 132.9 14.0 145 58-252 2-150 (161)
92 cd00154 Rab Rab family. Rab G 99.6 1.8E-14 4E-19 130.9 14.4 146 57-252 1-150 (159)
93 cd04149 Arf6 Arf6 subfamily. 99.6 2E-14 4.3E-19 133.8 14.8 146 55-252 8-158 (168)
94 cd01867 Rab8_Rab10_Rab13_like 99.6 1.9E-14 4E-19 133.5 14.6 144 56-252 3-153 (167)
95 cd01879 FeoB Ferrous iron tran 99.6 1.5E-14 3.3E-19 132.2 13.7 143 61-252 1-145 (158)
96 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 6.2E-15 1.4E-19 140.7 11.2 127 58-219 2-134 (196)
97 cd04159 Arl10_like Arl10-like 99.6 2.3E-14 5.1E-19 130.4 14.5 143 59-252 2-149 (159)
98 cd04142 RRP22 RRP22 subfamily. 99.6 1.8E-14 3.8E-19 137.8 14.2 151 58-252 2-162 (198)
99 cd04144 Ras2 Ras2 subfamily. 99.6 2.4E-14 5.1E-19 136.0 15.0 143 58-252 1-151 (190)
100 KOG1191|consensus 99.6 8.6E-15 1.9E-19 150.5 12.5 127 54-216 266-404 (531)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2.6E-14 5.6E-19 134.9 14.7 151 56-252 3-158 (183)
102 cd01863 Rab18 Rab18 subfamily. 99.6 3.3E-14 7.1E-19 130.7 15.0 145 57-252 1-150 (161)
103 cd04175 Rap1 Rap1 subgroup. T 99.6 2.5E-14 5.4E-19 132.1 14.1 143 57-252 2-151 (164)
104 cd01868 Rab11_like Rab11-like. 99.6 1.9E-14 4.1E-19 132.9 13.3 146 56-252 3-153 (165)
105 cd01866 Rab2 Rab2 subfamily. 99.6 1.5E-14 3.2E-19 134.4 12.6 146 56-252 4-154 (168)
106 TIGR02528 EutP ethanolamine ut 99.6 1.3E-14 2.8E-19 130.7 11.8 132 58-252 2-133 (142)
107 smart00175 RAB Rab subfamily o 99.6 2.4E-14 5.2E-19 131.7 13.8 143 57-252 1-150 (164)
108 cd04151 Arl1 Arl1 subfamily. 99.6 3.2E-14 6.9E-19 130.7 14.3 143 58-252 1-148 (158)
109 CHL00071 tufA elongation facto 99.6 2.7E-14 5.7E-19 151.5 15.7 167 55-253 11-182 (409)
110 cd04139 RalA_RalB RalA/RalB su 99.6 3.1E-14 6.7E-19 130.9 14.2 144 57-252 1-150 (164)
111 cd04119 RJL RJL (RabJ-Like) su 99.6 2.4E-14 5.2E-19 132.1 13.4 143 58-252 2-155 (168)
112 PRK15467 ethanolamine utilizat 99.6 3E-14 6.5E-19 131.2 13.8 133 58-252 3-135 (158)
113 PRK09554 feoB ferrous iron tra 99.6 2.8E-14 6.2E-19 160.7 16.3 152 55-252 2-156 (772)
114 cd01893 Miro1 Miro1 subfamily. 99.6 2.9E-14 6.3E-19 132.2 13.7 143 58-252 2-152 (166)
115 cd04150 Arf1_5_like Arf1-Arf5- 99.6 5.1E-14 1.1E-18 129.7 15.1 143 58-252 2-149 (159)
116 smart00178 SAR Sar1p-like memb 99.6 3.9E-14 8.5E-19 133.8 14.6 143 55-252 16-173 (184)
117 cd04176 Rap2 Rap2 subgroup. T 99.6 2.6E-14 5.6E-19 131.8 13.0 145 57-252 2-151 (163)
118 cd01860 Rab5_related Rab5-rela 99.6 3.3E-14 7.1E-19 130.9 13.7 143 57-252 2-151 (163)
119 cd00880 Era_like Era (E. coli 99.6 1E-13 2.3E-18 125.6 16.6 152 61-252 1-152 (163)
120 cd04122 Rab14 Rab14 subfamily. 99.6 2.8E-14 6E-19 132.2 12.9 146 57-252 3-152 (166)
121 cd01862 Rab7 Rab7 subfamily. 99.6 4.7E-14 1E-18 131.0 14.2 146 57-252 1-155 (172)
122 cd04112 Rab26 Rab26 subfamily. 99.6 2.9E-14 6.4E-19 135.5 13.1 143 58-252 2-151 (191)
123 cd04113 Rab4 Rab4 subfamily. 99.6 4.7E-14 1E-18 129.7 14.0 144 58-252 2-150 (161)
124 cd04120 Rab12 Rab12 subfamily. 99.6 5.2E-14 1.1E-18 134.8 14.7 144 58-252 2-151 (202)
125 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.9E-14 1.1E-18 135.1 14.5 145 57-252 1-156 (201)
126 cd01854 YjeQ_engC YjeQ/EngC. 99.6 4.4E-14 9.6E-19 142.6 14.7 147 168-367 75-227 (287)
127 cd04127 Rab27A Rab27a subfamil 99.6 3.2E-14 6.8E-19 133.5 12.4 153 56-252 4-165 (180)
128 PTZ00369 Ras-like protein; Pro 99.6 4.3E-14 9.3E-19 134.1 13.4 147 55-252 4-155 (189)
129 TIGR00491 aIF-2 translation in 99.6 6.2E-14 1.4E-18 153.4 16.4 131 55-215 3-135 (590)
130 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.1E-14 2E-18 127.4 15.1 142 58-252 1-148 (158)
131 cd04109 Rab28 Rab28 subfamily. 99.6 7E-14 1.5E-18 135.5 14.9 147 57-252 1-154 (215)
132 TIGR00475 selB selenocysteine- 99.5 7.2E-14 1.6E-18 153.8 16.5 147 58-252 2-154 (581)
133 PRK10512 selenocysteinyl-tRNA- 99.5 1.1E-13 2.3E-18 152.9 17.8 150 58-252 2-154 (614)
134 cd01876 YihA_EngB The YihA (En 99.5 1.8E-13 3.8E-18 125.9 16.4 155 59-252 2-159 (170)
135 COG0370 FeoB Fe2+ transport sy 99.5 3.7E-14 7.9E-19 152.3 13.5 149 55-252 2-152 (653)
136 TIGR00487 IF-2 translation ini 99.5 1.5E-13 3.2E-18 150.7 18.5 149 54-252 85-238 (587)
137 cd01888 eIF2_gamma eIF2-gamma 99.5 1.4E-13 3E-18 132.2 16.2 104 137-252 83-187 (203)
138 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 8.7E-14 1.9E-18 129.7 14.3 144 58-252 2-153 (170)
139 cd04158 ARD1 ARD1 subfamily. 99.5 9.8E-14 2.1E-18 129.1 14.5 144 58-252 1-149 (169)
140 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1E-13 2.2E-18 129.6 14.5 144 56-252 15-164 (174)
141 cd04106 Rab23_lke Rab23-like s 99.5 5.8E-14 1.2E-18 129.1 12.6 146 58-252 2-151 (162)
142 PRK05306 infB translation init 99.5 1.1E-13 2.4E-18 155.1 17.2 151 54-252 288-440 (787)
143 smart00177 ARF ARF-like small 99.5 1.3E-13 2.8E-18 129.1 15.0 145 56-252 13-162 (175)
144 cd04125 RabA_like RabA-like su 99.5 1.1E-13 2.3E-18 131.1 14.5 144 57-252 1-150 (188)
145 cd04118 Rab24 Rab24 subfamily. 99.5 3.4E-14 7.5E-19 135.0 11.1 151 57-252 1-154 (193)
146 smart00053 DYNc Dynamin, GTPas 99.5 1E-13 2.3E-18 135.1 14.5 160 55-217 25-208 (240)
147 cd04110 Rab35 Rab35 subfamily. 99.5 1.2E-13 2.6E-18 132.2 14.8 145 55-252 5-155 (199)
148 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 8.2E-14 1.8E-18 130.1 13.2 144 57-252 3-152 (172)
149 KOG2423|consensus 99.5 1.6E-14 3.6E-19 143.8 8.6 161 161-367 203-366 (572)
150 COG2262 HflX GTPases [General 99.5 1.5E-13 3.3E-18 139.4 15.7 148 54-252 190-344 (411)
151 PRK00089 era GTPase Era; Revie 99.5 1.3E-14 2.9E-19 147.3 8.1 187 306-550 5-210 (292)
152 cd00879 Sar1 Sar1 subfamily. 99.5 1.6E-13 3.5E-18 130.0 15.1 147 55-252 18-179 (190)
153 cd00157 Rho Rho (Ras homology) 99.5 5.7E-14 1.2E-18 130.3 11.7 149 57-252 1-161 (171)
154 cd04123 Rab21 Rab21 subfamily. 99.5 1.4E-13 3.1E-18 126.1 14.1 144 58-252 2-150 (162)
155 PRK12736 elongation factor Tu; 99.5 3.4E-13 7.3E-18 142.3 18.4 164 55-250 11-179 (394)
156 cd04116 Rab9 Rab9 subfamily. 99.5 1.6E-13 3.5E-18 127.4 14.1 145 56-252 5-159 (170)
157 PRK05506 bifunctional sulfate 99.5 7.4E-14 1.6E-18 156.0 14.0 173 56-253 24-210 (632)
158 PLN03118 Rab family protein; P 99.5 1.5E-13 3.3E-18 132.7 14.3 146 54-252 12-165 (211)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 1.7E-13 3.6E-18 127.0 13.8 144 58-251 1-147 (164)
160 cd04114 Rab30 Rab30 subfamily. 99.5 1.8E-13 4E-18 126.8 14.1 145 56-252 7-157 (169)
161 PLN00223 ADP-ribosylation fact 99.5 3E-13 6.5E-18 127.4 15.6 145 55-252 16-166 (181)
162 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.1E-13 2.4E-18 127.6 12.3 147 58-252 2-152 (164)
163 PLN03110 Rab GTPase; Provision 99.5 1.4E-13 3E-18 133.5 13.5 147 54-252 10-162 (216)
164 cd04177 RSR1 RSR1 subgroup. R 99.5 2.5E-13 5.4E-18 126.1 14.4 144 57-252 2-152 (168)
165 cd00876 Ras Ras family. The R 99.5 2E-13 4.3E-18 124.8 13.5 143 58-252 1-149 (160)
166 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.2E-13 4.9E-18 126.5 14.0 143 58-251 1-150 (167)
167 cd00877 Ran Ran (Ras-related n 99.5 1.9E-13 4.1E-18 126.9 13.3 144 57-252 1-147 (166)
168 cd04126 Rab20 Rab20 subfamily. 99.5 3.2E-13 6.9E-18 130.9 15.2 110 58-215 2-114 (220)
169 cd04111 Rab39 Rab39 subfamily. 99.5 1.8E-13 3.9E-18 132.2 13.3 147 57-252 3-154 (211)
170 CHL00189 infB translation init 99.5 2.7E-13 5.8E-18 150.8 16.3 152 54-252 242-398 (742)
171 PRK12317 elongation factor 1-a 99.5 2.6E-13 5.6E-18 145.0 15.7 172 56-253 6-194 (425)
172 cd04143 Rhes_like Rhes_like su 99.5 4.5E-13 9.8E-18 132.3 16.2 145 58-252 2-159 (247)
173 smart00174 RHO Rho (Ras homolo 99.5 1.6E-13 3.4E-18 127.9 12.1 146 59-252 1-160 (174)
174 KOG0098|consensus 99.5 9.9E-14 2.1E-18 125.4 10.1 149 55-252 5-156 (216)
175 cd04104 p47_IIGP_like p47 (47- 99.5 7.1E-13 1.5E-17 126.7 16.7 120 57-215 2-121 (197)
176 cd01883 EF1_alpha Eukaryotic e 99.5 2.2E-13 4.8E-18 132.4 13.2 105 137-254 77-195 (219)
177 PLN03127 Elongation factor Tu; 99.5 4.5E-13 9.7E-18 142.9 16.6 101 137-249 124-227 (447)
178 COG0486 ThdF Predicted GTPase 99.5 9.4E-14 2E-18 143.5 11.0 142 304-471 215-377 (454)
179 cd04121 Rab40 Rab40 subfamily. 99.5 4.3E-13 9.3E-18 127.2 14.7 147 55-252 5-155 (189)
180 PTZ00133 ADP-ribosylation fact 99.5 4.8E-13 1E-17 126.2 14.9 145 56-252 17-166 (182)
181 KOG0094|consensus 99.5 2.4E-13 5.1E-18 124.0 12.2 150 54-252 20-173 (221)
182 cd04155 Arl3 Arl3 subfamily. 99.5 3.7E-13 8E-18 125.3 14.0 146 55-252 13-163 (173)
183 cd01892 Miro2 Miro2 subfamily. 99.5 2E-13 4.3E-18 127.1 12.1 146 56-252 4-154 (169)
184 cd04147 Ras_dva Ras-dva subfam 99.5 3.3E-13 7.1E-18 129.0 13.8 146 58-252 1-151 (198)
185 cd04117 Rab15 Rab15 subfamily. 99.5 3.4E-13 7.5E-18 124.4 13.2 146 58-252 2-150 (161)
186 cd01886 EF-G Elongation factor 99.5 3.8E-13 8.3E-18 134.4 14.5 160 58-249 1-160 (270)
187 cd04115 Rab33B_Rab33A Rab33B/R 99.5 2.7E-13 5.9E-18 126.2 12.6 144 57-250 3-152 (170)
188 cd04128 Spg1 Spg1p. Spg1p (se 99.5 6.8E-13 1.5E-17 125.1 15.5 145 57-252 1-154 (182)
189 PLN03108 Rab family protein; P 99.5 3.4E-13 7.4E-18 130.2 13.7 146 56-252 6-156 (210)
190 PF10662 PduV-EutP: Ethanolami 99.5 3.5E-13 7.6E-18 119.8 12.3 131 58-252 3-134 (143)
191 cd04132 Rho4_like Rho4-like su 99.5 7.5E-13 1.6E-17 125.1 15.4 144 58-252 2-155 (187)
192 TIGR00485 EF-Tu translation el 99.5 1.3E-12 2.9E-17 138.0 18.9 164 55-250 11-179 (394)
193 PLN03071 GTP-binding nuclear p 99.5 5.8E-13 1.3E-17 129.4 14.9 147 54-252 11-160 (219)
194 COG1162 Predicted GTPases [Gen 99.5 6.6E-13 1.4E-17 131.2 15.3 150 167-368 75-231 (301)
195 cd04137 RheB Rheb (Ras Homolog 99.5 3.4E-13 7.4E-18 126.6 12.8 144 57-252 2-151 (180)
196 cd01885 EF2 EF2 (for archaea a 99.5 8.2E-13 1.8E-17 128.0 15.5 66 137-214 73-138 (222)
197 cd01874 Cdc42 Cdc42 subfamily. 99.5 2.9E-13 6.2E-18 126.8 11.8 149 57-252 2-163 (175)
198 cd04146 RERG_RasL11_like RERG/ 99.5 2.4E-13 5.3E-18 125.6 10.9 143 58-252 1-152 (165)
199 PRK12735 elongation factor Tu; 99.5 5.8E-13 1.3E-17 140.7 14.9 102 137-252 75-181 (396)
200 cd04148 RGK RGK subfamily. Th 99.5 6.3E-13 1.4E-17 129.3 13.8 143 57-252 1-151 (221)
201 KOG0092|consensus 99.5 1.5E-13 3.3E-18 125.2 8.6 148 55-252 4-155 (200)
202 PRK04004 translation initiatio 99.5 1.2E-12 2.5E-17 144.0 17.2 129 55-214 5-136 (586)
203 PRK05124 cysN sulfate adenylyl 99.5 5E-13 1.1E-17 143.8 14.1 175 54-253 25-214 (474)
204 cd01870 RhoA_like RhoA-like su 99.5 6.4E-13 1.4E-17 124.0 12.9 148 57-252 2-163 (175)
205 TIGR01394 TypA_BipA GTP-bindin 99.5 2.6E-12 5.7E-17 141.3 19.8 165 58-252 3-169 (594)
206 PLN03126 Elongation factor Tu; 99.5 9.9E-13 2.1E-17 141.0 16.0 165 56-252 81-250 (478)
207 KOG1423|consensus 99.5 4.4E-14 9.5E-19 137.1 4.9 219 303-548 69-308 (379)
208 COG0370 FeoB Fe2+ transport sy 99.5 1.5E-13 3.2E-18 147.8 9.3 143 306-471 3-165 (653)
209 cd04134 Rho3 Rho3 subfamily. 99.5 3.8E-13 8.2E-18 127.6 11.1 146 58-252 2-162 (189)
210 PRK00049 elongation factor Tu; 99.5 9.3E-13 2E-17 139.0 15.2 165 55-251 11-180 (396)
211 KOG0084|consensus 99.5 3.1E-13 6.8E-18 123.7 9.9 153 52-252 5-160 (205)
212 cd04135 Tc10 TC10 subfamily. 99.5 4.6E-13 9.9E-18 124.8 11.3 147 57-252 1-162 (174)
213 cd04130 Wrch_1 Wrch-1 subfamil 99.4 3.2E-13 7E-18 126.0 10.1 148 57-252 1-162 (173)
214 TIGR00231 small_GTP small GTP- 99.4 2.1E-12 4.5E-17 116.9 15.2 144 57-252 2-152 (161)
215 KOG2485|consensus 99.4 4.2E-13 9E-18 131.3 11.0 180 140-367 25-210 (335)
216 cd01871 Rac1_like Rac1-like su 99.4 9.2E-13 2E-17 123.3 12.6 150 57-252 2-163 (174)
217 TIGR02034 CysN sulfate adenyly 99.4 8.7E-13 1.9E-17 139.7 13.8 172 57-253 1-186 (406)
218 cd01896 DRG The developmentall 99.4 3.2E-12 7E-17 125.2 16.5 88 58-183 2-89 (233)
219 TIGR01393 lepA GTP-binding pro 99.4 4.9E-12 1.1E-16 139.5 19.7 96 138-252 71-168 (595)
220 PRK10218 GTP-binding protein; 99.4 6E-12 1.3E-16 138.3 20.4 168 55-252 4-173 (607)
221 cd01875 RhoG RhoG subfamily. 99.4 2.2E-12 4.8E-17 122.6 14.3 152 55-252 2-165 (191)
222 KOG1489|consensus 99.4 1.9E-12 4.2E-17 126.6 13.9 151 54-252 194-355 (366)
223 PRK12298 obgE GTPase CgtA; Rev 99.4 4.2E-13 9.1E-18 140.5 9.8 57 308-367 161-221 (390)
224 TIGR00437 feoB ferrous iron tr 99.4 1.1E-12 2.5E-17 144.5 13.4 141 63-252 1-143 (591)
225 cd04131 Rnd Rnd subfamily. Th 99.4 2.9E-12 6.3E-17 120.4 14.0 115 57-215 2-119 (178)
226 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 2.9E-12 6.4E-17 120.8 14.0 116 55-215 4-123 (182)
227 TIGR03680 eif2g_arch translati 99.4 3.5E-12 7.5E-17 135.2 15.2 103 137-252 80-184 (406)
228 cd04133 Rop_like Rop subfamily 99.4 2.2E-12 4.7E-17 120.9 12.1 146 57-252 2-161 (176)
229 cd04168 TetM_like Tet(M)-like 99.4 2.5E-12 5.4E-17 126.2 13.1 130 58-215 1-130 (237)
230 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.9E-12 1.7E-16 121.9 16.5 145 54-252 37-184 (225)
231 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 3.1E-12 6.7E-17 124.9 13.4 116 55-215 12-131 (232)
232 KOG0078|consensus 99.4 2.6E-12 5.7E-17 119.4 12.1 152 52-252 8-162 (207)
233 cd04167 Snu114p Snu114p subfam 99.4 7.3E-12 1.6E-16 121.2 15.8 132 58-214 2-136 (213)
234 COG0536 Obg Predicted GTPase [ 99.4 5.1E-12 1.1E-16 125.2 13.8 153 58-252 161-321 (369)
235 cd01853 Toc34_like Toc34-like 99.4 3.7E-12 8E-17 125.6 12.9 129 54-216 29-164 (249)
236 COG3596 Predicted GTPase [Gene 99.4 3.4E-12 7.5E-17 123.2 12.0 156 55-252 38-210 (296)
237 cd01850 CDC_Septin CDC/Septin. 99.4 1.1E-11 2.3E-16 124.4 15.5 135 56-219 4-161 (276)
238 TIGR00484 EF-G translation elo 99.4 8.4E-12 1.8E-16 140.9 16.1 164 54-249 8-171 (689)
239 PRK00007 elongation factor G; 99.4 4.5E-12 9.8E-17 142.9 13.9 163 55-249 9-171 (693)
240 PRK05433 GTP-binding protein L 99.4 3.5E-11 7.5E-16 132.9 20.6 99 137-252 74-172 (600)
241 cd04169 RF3 RF3 subfamily. Pe 99.4 2.8E-12 6.1E-17 128.0 10.8 68 137-216 71-138 (267)
242 cd00882 Ras_like_GTPase Ras-li 99.4 8.2E-12 1.8E-16 111.6 12.6 143 61-252 1-148 (157)
243 smart00176 RAN Ran (Ras-relate 99.4 7.5E-12 1.6E-16 119.7 12.8 139 62-252 1-142 (200)
244 PTZ00141 elongation factor 1- 99.4 7.2E-12 1.6E-16 133.9 13.8 103 137-253 85-202 (446)
245 PTZ00327 eukaryotic translatio 99.3 1.1E-11 2.5E-16 132.0 14.9 104 137-252 117-221 (460)
246 cd04170 EF-G_bact Elongation f 99.3 2.5E-11 5.5E-16 121.6 16.0 68 137-216 64-131 (268)
247 COG1163 DRG Predicted GTPase [ 99.3 1.4E-11 3E-16 121.2 13.1 91 55-183 62-152 (365)
248 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 1.5E-11 3.2E-16 119.4 13.2 113 57-215 2-119 (222)
249 TIGR00483 EF-1_alpha translati 99.3 1.8E-11 3.8E-16 130.9 15.0 103 137-253 85-196 (426)
250 KOG1490|consensus 99.3 6.5E-12 1.4E-16 129.3 11.0 159 55-252 167-329 (620)
251 COG0532 InfB Translation initi 99.3 1.5E-11 3.2E-16 129.0 13.7 151 55-252 4-158 (509)
252 cd04105 SR_beta Signal recogni 99.3 2.8E-11 6.2E-16 116.1 14.5 115 57-215 1-123 (203)
253 TIGR00991 3a0901s02IAP34 GTP-b 99.3 3.4E-11 7.3E-16 120.6 15.4 125 55-216 37-168 (313)
254 PRK12739 elongation factor G; 99.3 1.8E-11 3.8E-16 138.2 14.9 134 55-216 7-140 (691)
255 PF00025 Arf: ADP-ribosylation 99.3 8.3E-12 1.8E-16 116.9 9.6 147 55-252 13-164 (175)
256 PRK04000 translation initiatio 99.3 3.1E-11 6.7E-16 128.0 14.9 103 137-252 85-189 (411)
257 PF04548 AIG1: AIG1 family; I 99.3 6.3E-12 1.4E-16 121.5 8.8 129 58-220 2-135 (212)
258 PF00071 Ras: Ras family; Int 99.3 2.4E-11 5.2E-16 111.7 12.2 143 58-252 1-149 (162)
259 TIGR02836 spore_IV_A stage IV 99.3 8.2E-11 1.8E-15 120.2 17.0 135 55-214 16-193 (492)
260 PF08477 Miro: Miro-like prote 99.3 4.7E-12 1E-16 110.3 6.8 112 58-212 1-119 (119)
261 cd04103 Centaurin_gamma Centau 99.3 3.3E-11 7.2E-16 110.9 12.8 139 58-252 2-147 (158)
262 cd04102 RabL3 RabL3 (Rab-like3 99.3 3.9E-11 8.4E-16 114.8 13.6 152 58-252 2-178 (202)
263 KOG0087|consensus 99.3 1.4E-11 2.9E-16 114.1 9.2 151 52-252 10-164 (222)
264 PRK01889 GTPase RsgA; Reviewed 99.3 3E-11 6.5E-16 125.5 12.7 148 168-368 109-262 (356)
265 KOG1145|consensus 99.3 4.6E-11 1E-15 124.2 13.8 152 54-252 151-304 (683)
266 COG5256 TEF1 Translation elong 99.3 2.4E-11 5.3E-16 123.4 11.0 172 55-253 6-200 (428)
267 KOG0093|consensus 99.3 4E-11 8.6E-16 104.3 10.7 153 50-252 15-171 (193)
268 cd04129 Rho2 Rho2 subfamily. 99.3 3.6E-11 7.8E-16 113.8 11.6 147 57-252 2-161 (187)
269 KOG0095|consensus 99.3 3.5E-11 7.6E-16 104.7 10.2 149 55-252 6-157 (213)
270 cd01899 Ygr210 Ygr210 subfamil 99.2 1.6E-10 3.5E-15 117.8 15.5 108 59-182 1-110 (318)
271 cd01873 RhoBTB RhoBTB subfamil 99.2 1.1E-10 2.4E-15 111.3 13.5 64 138-215 67-134 (195)
272 PTZ00132 GTP-binding nuclear p 99.2 2.6E-10 5.7E-15 110.4 16.0 146 54-252 7-156 (215)
273 KOG0086|consensus 99.2 1.2E-10 2.6E-15 101.9 11.7 149 55-252 8-159 (214)
274 KOG0462|consensus 99.2 1.1E-10 2.5E-15 121.4 13.4 155 55-252 59-223 (650)
275 KOG0080|consensus 99.2 7E-11 1.5E-15 104.3 10.0 150 54-252 9-162 (209)
276 PF09439 SRPRB: Signal recogni 99.2 9.4E-11 2E-15 109.0 11.3 115 55-216 2-127 (181)
277 PLN00023 GTP-binding protein; 99.2 1.5E-10 3.4E-15 116.5 13.3 130 54-216 19-166 (334)
278 KOG0073|consensus 99.2 2.1E-10 4.6E-15 101.9 12.5 144 55-252 15-166 (185)
279 COG2229 Predicted GTPase [Gene 99.2 3.9E-10 8.4E-15 102.7 14.6 153 54-252 8-166 (187)
280 KOG0394|consensus 99.2 5.1E-11 1.1E-15 107.8 8.8 149 55-252 8-166 (210)
281 TIGR00503 prfC peptide chain r 99.2 2.8E-10 6E-15 123.8 15.9 136 54-215 9-146 (527)
282 PLN00043 elongation factor 1-a 99.2 1.5E-10 3.3E-15 123.7 13.6 103 137-253 85-202 (447)
283 KOG0091|consensus 99.2 1.1E-10 2.3E-15 103.4 9.8 151 54-252 6-161 (213)
284 TIGR00993 3a0901s04IAP86 chlor 99.2 2.1E-10 4.6E-15 123.5 13.3 129 54-216 116-251 (763)
285 PF05049 IIGP: Interferon-indu 99.2 6.5E-10 1.4E-14 114.3 16.1 154 55-251 34-203 (376)
286 PRK00741 prfC peptide chain re 99.2 2.2E-10 4.7E-15 124.6 13.4 136 54-215 8-145 (526)
287 COG1217 TypA Predicted membran 99.2 3.7E-10 8E-15 115.5 13.8 167 56-252 5-173 (603)
288 cd01895 EngA2 EngA2 subfamily. 99.2 8.1E-11 1.7E-15 108.7 7.8 148 306-468 2-173 (174)
289 PRK09602 translation-associate 99.1 8.8E-10 1.9E-14 115.8 15.6 111 57-182 2-113 (396)
290 PTZ00416 elongation factor 2; 99.1 5.7E-10 1.2E-14 128.0 14.7 133 55-214 18-157 (836)
291 KOG0448|consensus 99.1 1.8E-09 4E-14 115.3 16.8 183 55-248 108-310 (749)
292 PRK09554 feoB ferrous iron tra 99.1 4.4E-10 9.5E-15 127.1 12.3 187 306-523 3-212 (772)
293 PRK09435 membrane ATPase/prote 99.1 7.3E-10 1.6E-14 113.1 12.5 97 137-252 149-248 (332)
294 PF00735 Septin: Septin; Inte 99.1 1.2E-09 2.5E-14 109.8 13.2 141 56-222 4-163 (281)
295 KOG1144|consensus 99.1 1.8E-09 3.9E-14 115.5 14.8 132 55-214 474-605 (1064)
296 COG2895 CysN GTPases - Sulfate 99.1 2.3E-10 5E-15 113.5 7.2 106 137-254 86-193 (431)
297 PRK13351 elongation factor G; 99.1 1.5E-09 3.2E-14 122.9 14.8 134 55-216 7-140 (687)
298 PLN00116 translation elongatio 99.1 1.6E-09 3.6E-14 124.5 15.2 66 137-214 98-163 (843)
299 COG1100 GTPase SAR1 and relate 99.1 1.5E-09 3.3E-14 105.0 12.6 117 57-217 6-127 (219)
300 COG0481 LepA Membrane GTPase L 99.1 1.5E-09 3.3E-14 111.4 12.6 96 138-252 77-174 (603)
301 KOG0079|consensus 99.0 5.4E-10 1.2E-14 97.3 7.2 151 53-252 5-157 (198)
302 COG5257 GCD11 Translation init 99.0 4.7E-09 1E-13 103.0 13.9 176 55-252 9-190 (415)
303 PRK13768 GTPase; Provisional 99.0 3.5E-09 7.6E-14 105.0 12.9 76 138-219 98-180 (253)
304 TIGR00490 aEF-2 translation el 99.0 1.3E-09 2.8E-14 123.5 11.0 67 137-215 86-152 (720)
305 COG4917 EutP Ethanolamine util 99.0 1.3E-09 2.9E-14 92.5 8.2 132 58-252 3-134 (148)
306 KOG0097|consensus 99.0 3.5E-09 7.5E-14 91.4 10.3 148 56-252 11-161 (215)
307 KOG0395|consensus 99.0 3.5E-09 7.6E-14 100.7 11.1 143 56-252 3-153 (196)
308 PRK09601 GTP-binding protein Y 99.0 1.8E-09 4E-14 111.0 9.7 104 57-182 3-107 (364)
309 PRK07560 elongation factor EF- 99.0 4.7E-09 1E-13 119.3 13.1 133 55-214 19-152 (731)
310 cd01900 YchF YchF subfamily. 98.9 2.3E-09 5E-14 106.8 9.1 103 59-183 1-104 (274)
311 PRK00454 engB GTP-binding prot 98.9 4.3E-09 9.3E-14 100.0 10.6 62 305-367 23-84 (196)
312 PRK05291 trmE tRNA modificatio 98.9 5.9E-09 1.3E-13 111.8 12.3 137 305-470 214-370 (449)
313 PRK12740 elongation factor G; 98.9 2.3E-09 5.1E-14 121.1 9.7 67 137-215 60-126 (668)
314 COG0218 Predicted GTPase [Gene 98.9 5.2E-09 1.1E-13 97.5 10.2 109 305-415 23-147 (200)
315 KOG0458|consensus 98.9 9.8E-09 2.1E-13 108.3 13.4 170 55-253 176-371 (603)
316 KOG0410|consensus 98.9 4.3E-09 9.4E-14 103.5 10.0 147 54-252 176-329 (410)
317 PTZ00258 GTP-binding protein; 98.9 5E-09 1.1E-13 109.0 10.7 106 55-182 20-126 (390)
318 KOG1532|consensus 98.9 9.8E-09 2.1E-13 98.8 11.5 78 137-217 116-197 (366)
319 KOG2486|consensus 98.9 5.9E-09 1.3E-13 100.7 9.7 163 54-252 134-304 (320)
320 KOG0081|consensus 98.9 1.7E-09 3.7E-14 95.3 5.2 158 51-252 4-169 (219)
321 PRK12299 obgE GTPase CgtA; Rev 98.9 7E-09 1.5E-13 106.8 10.2 58 307-367 159-220 (335)
322 COG0050 TufB GTPases - transla 98.9 1.3E-08 2.8E-13 98.9 11.2 99 137-247 75-176 (394)
323 PRK12296 obgE GTPase CgtA; Rev 98.9 7.8E-09 1.7E-13 110.6 10.8 144 306-474 159-344 (500)
324 cd01898 Obg Obg subfamily. Th 98.9 5.3E-09 1.1E-13 96.8 8.2 55 308-365 2-60 (170)
325 PRK14845 translation initiatio 98.9 2.6E-08 5.6E-13 114.8 15.3 67 137-215 526-592 (1049)
326 COG3276 SelB Selenocysteine-sp 98.9 2.8E-08 6.1E-13 102.1 13.8 156 58-275 2-160 (447)
327 TIGR00750 lao LAO/AO transport 98.9 5.4E-08 1.2E-12 99.1 15.8 97 137-252 127-226 (300)
328 KOG2655|consensus 98.9 2.4E-08 5.1E-13 101.5 12.8 148 56-227 21-184 (366)
329 TIGR00450 mnmE_trmE_thdF tRNA 98.9 2.2E-08 4.8E-13 106.9 13.3 103 305-415 202-322 (442)
330 PF03308 ArgK: ArgK protein; 98.9 2.1E-08 4.6E-13 97.2 11.7 96 137-252 122-218 (266)
331 KOG0088|consensus 98.9 4.5E-09 9.7E-14 92.6 6.4 149 55-252 12-163 (218)
332 COG1084 Predicted GTPase [Gene 98.9 9.4E-09 2E-13 101.9 9.4 108 305-415 167-292 (346)
333 COG5019 CDC3 Septin family pro 98.8 6.4E-08 1.4E-12 97.6 15.1 140 56-222 23-183 (373)
334 KOG0461|consensus 98.8 3.6E-08 7.7E-13 97.6 12.8 157 57-250 8-175 (522)
335 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.8E-09 1E-13 96.4 6.4 39 56-94 102-140 (157)
336 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 3.7E-08 7.9E-13 95.7 12.7 128 58-223 1-133 (232)
337 KOG0075|consensus 98.8 2.8E-08 6.1E-13 86.7 10.2 145 56-252 20-170 (186)
338 TIGR02729 Obg_CgtA Obg family 98.8 9.4E-09 2E-13 105.7 8.6 59 306-367 157-219 (329)
339 PF03193 DUF258: Protein of un 98.8 1.1E-08 2.3E-13 93.4 7.8 64 306-369 35-103 (161)
340 COG0480 FusA Translation elong 98.8 1.9E-08 4.2E-13 111.7 11.0 136 54-216 8-143 (697)
341 TIGR03598 GTPase_YsxC ribosome 98.8 4.3E-09 9.4E-14 98.8 5.1 63 304-367 16-78 (179)
342 TIGR03156 GTP_HflX GTP-binding 98.8 1.2E-08 2.7E-13 105.7 8.9 58 305-365 188-249 (351)
343 cd04163 Era Era subfamily. Er 98.8 1E-08 2.2E-13 93.6 7.4 60 306-367 3-65 (168)
344 TIGR00437 feoB ferrous iron tr 98.8 1.5E-08 3.3E-13 112.0 9.6 134 313-469 1-154 (591)
345 PRK04213 GTP-binding protein; 98.8 2.2E-08 4.7E-13 95.7 9.4 55 305-364 8-63 (201)
346 PRK11058 GTPase HflX; Provisio 98.8 2.6E-07 5.7E-12 98.2 18.5 138 305-469 196-361 (426)
347 cd04178 Nucleostemin_like Nucl 98.8 1.1E-08 2.4E-13 95.3 6.9 40 55-94 116-155 (172)
348 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 1.6E-08 3.5E-13 96.4 7.9 61 307-368 1-64 (196)
349 cd04171 SelB SelB subfamily. 98.8 3.2E-08 7E-13 90.6 9.3 57 308-364 2-62 (164)
350 PRK12297 obgE GTPase CgtA; Rev 98.8 2.5E-08 5.4E-13 105.4 9.6 138 307-471 159-328 (424)
351 cd03112 CobW_like The function 98.8 1.6E-08 3.4E-13 93.1 7.0 141 57-213 1-158 (158)
352 cd01897 NOG NOG1 is a nucleola 98.7 4.7E-08 1E-12 90.3 9.4 56 307-365 1-59 (168)
353 COG0523 Putative GTPases (G3E 98.7 2.5E-07 5.5E-12 94.3 15.4 167 57-246 2-184 (323)
354 cd01894 EngA1 EngA1 subfamily. 98.7 2.3E-08 5E-13 90.8 6.9 98 310-415 1-117 (157)
355 KOG4252|consensus 98.7 2.4E-08 5.2E-13 89.9 6.3 153 50-252 14-169 (246)
356 cd01879 FeoB Ferrous iron tran 98.7 3E-08 6.5E-13 90.3 7.2 53 311-366 1-56 (158)
357 TIGR00073 hypB hydrogenase acc 98.7 5.1E-08 1.1E-12 93.8 8.9 160 55-252 21-195 (207)
358 KOG0083|consensus 98.7 4.8E-09 1E-13 89.8 1.3 98 138-252 48-148 (192)
359 cd04164 trmE TrmE (MnmE, ThdF, 98.7 2.7E-08 5.8E-13 90.3 6.4 58 307-366 2-62 (157)
360 KOG0076|consensus 98.7 4.5E-08 9.6E-13 88.1 7.5 103 137-252 69-175 (197)
361 cd01849 YlqF_related_GTPase Yl 98.7 4.8E-08 1E-12 89.5 7.3 41 55-95 99-139 (155)
362 PF01926 MMR_HSR1: 50S ribosom 98.6 3.2E-08 6.9E-13 85.9 5.2 58 308-367 1-61 (116)
363 KOG0468|consensus 98.6 1.2E-07 2.7E-12 100.7 10.4 132 55-214 127-262 (971)
364 cd04142 RRP22 RRP22 subfamily. 98.6 1.8E-07 3.9E-12 89.4 10.6 140 308-468 2-172 (198)
365 KOG0090|consensus 98.6 2.7E-07 5.8E-12 86.1 10.9 110 56-215 38-159 (238)
366 cd01881 Obg_like The Obg-like 98.6 3.6E-08 7.8E-13 91.5 5.2 52 311-365 1-56 (176)
367 COG5258 GTPBP1 GTPase [General 98.6 9E-08 2E-12 96.1 8.2 177 55-252 116-327 (527)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 7.7E-08 1.7E-12 86.7 7.0 36 57-92 84-119 (141)
369 PF03029 ATP_bind_1: Conserved 98.6 1.1E-07 2.5E-12 93.2 8.4 69 138-215 92-170 (238)
370 COG4108 PrfC Peptide chain rel 98.6 3.4E-07 7.4E-12 93.7 11.4 68 137-216 81-148 (528)
371 KOG1547|consensus 98.6 7.3E-07 1.6E-11 84.4 12.6 135 56-219 46-202 (336)
372 PRK15467 ethanolamine utilizat 98.6 1.9E-07 4.2E-12 85.8 8.7 127 308-469 3-146 (158)
373 COG5192 BMS1 GTP-binding prote 98.6 5.6E-07 1.2E-11 94.1 12.7 139 54-249 67-211 (1077)
374 cd01889 SelB_euk SelB subfamil 98.6 1.4E-07 3.1E-12 89.5 7.9 58 307-364 1-79 (192)
375 cd01878 HflX HflX subfamily. 98.6 1.6E-07 3.4E-12 90.0 8.0 59 305-366 40-102 (204)
376 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.2E-07 2.7E-12 95.8 7.3 40 55-94 120-159 (287)
377 cd01893 Miro1 Miro1 subfamily. 98.6 2.2E-07 4.7E-12 85.9 8.3 57 308-364 2-58 (166)
378 COG1703 ArgK Putative periplas 98.6 7.2E-07 1.6E-11 87.8 12.1 97 137-252 144-242 (323)
379 KOG1486|consensus 98.5 4.4E-07 9.6E-12 86.4 10.3 91 55-183 61-151 (364)
380 cd01855 YqeH YqeH. YqeH is an 98.5 1.2E-07 2.6E-12 89.9 6.3 26 56-81 127-152 (190)
381 COG0012 Predicted GTPase, prob 98.5 2.7E-07 5.8E-12 93.7 8.9 108 56-183 2-109 (372)
382 TIGR03596 GTPase_YlqF ribosome 98.5 1.9E-07 4.1E-12 94.0 7.3 40 55-94 117-156 (276)
383 KOG0070|consensus 98.5 6.1E-07 1.3E-11 82.1 9.5 146 55-252 16-166 (181)
384 PTZ00099 rab6; Provisional 98.5 4E-07 8.7E-12 85.3 8.6 98 137-252 29-130 (176)
385 TIGR00231 small_GTP small GTP- 98.5 3.5E-07 7.5E-12 82.4 8.0 55 307-364 2-61 (161)
386 TIGR00101 ureG urease accessor 98.5 9.1E-07 2E-11 84.5 11.1 90 138-252 93-184 (199)
387 TIGR02475 CobW cobalamin biosy 98.5 1.2E-06 2.5E-11 90.7 12.7 147 55-222 3-194 (341)
388 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 2E-07 4.4E-12 85.9 6.4 55 307-364 1-61 (168)
389 PF02492 cobW: CobW/HypB/UreG, 98.5 2.4E-07 5.2E-12 87.0 7.0 141 57-218 1-158 (178)
390 KOG3883|consensus 98.5 2E-06 4.3E-11 75.8 11.7 135 55-230 8-146 (198)
391 cd04104 p47_IIGP_like p47 (47- 98.5 2.6E-07 5.7E-12 88.2 6.9 61 306-367 1-66 (197)
392 TIGR03597 GTPase_YqeH ribosome 98.5 1.3E-07 2.8E-12 98.6 5.2 121 57-217 155-282 (360)
393 PRK10463 hydrogenase nickel in 98.5 1.3E-06 2.9E-11 87.1 12.0 26 55-80 103-128 (290)
394 KOG0447|consensus 98.5 2.1E-06 4.5E-11 89.7 13.5 193 14-216 275-494 (980)
395 COG1161 Predicted GTPases [Gen 98.5 2.1E-07 4.7E-12 95.4 6.4 40 56-95 132-171 (322)
396 cd00881 GTP_translation_factor 98.5 3.3E-07 7.1E-12 86.0 6.8 57 308-364 1-73 (189)
397 COG0536 Obg Predicted GTPase [ 98.4 4.8E-07 1E-11 90.3 7.8 143 308-472 161-335 (369)
398 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 7.4E-07 1.6E-11 82.1 8.7 55 307-364 3-62 (166)
399 cd01876 YihA_EngB The YihA (En 98.4 6.7E-07 1.5E-11 81.8 8.4 59 309-368 2-60 (170)
400 cd01884 EF_Tu EF-Tu subfamily. 98.4 2.2E-07 4.8E-12 88.5 5.2 96 307-416 3-131 (195)
401 cd01867 Rab8_Rab10_Rab13_like 98.4 6.6E-07 1.4E-11 82.7 7.9 58 306-364 3-63 (167)
402 KOG0074|consensus 98.4 9.9E-07 2.1E-11 76.7 8.2 149 54-252 15-167 (185)
403 KOG0077|consensus 98.4 1.6E-06 3.4E-11 77.7 9.4 113 56-216 20-136 (193)
404 KOG1707|consensus 98.4 1.8E-06 4E-11 91.4 11.5 116 53-216 6-130 (625)
405 PRK11537 putative GTP-binding 98.4 3.4E-06 7.4E-11 86.3 13.2 142 55-217 3-166 (318)
406 cd01856 YlqF YlqF. Proteins o 98.4 5.6E-07 1.2E-11 83.9 6.8 39 55-93 114-152 (171)
407 cd01851 GBP Guanylate-binding 98.4 1.1E-06 2.3E-11 85.7 8.9 92 56-182 7-102 (224)
408 cd04138 H_N_K_Ras_like H-Ras/N 98.4 1E-06 2.2E-11 80.3 8.3 57 307-364 2-60 (162)
409 CHL00071 tufA elongation facto 98.4 7.8E-07 1.7E-11 94.6 8.3 98 305-416 11-141 (409)
410 cd04140 ARHI_like ARHI subfami 98.4 7E-07 1.5E-11 82.4 6.8 59 307-365 2-61 (165)
411 PF03193 DUF258: Protein of un 98.4 2.1E-07 4.6E-12 84.9 3.2 25 56-80 35-59 (161)
412 cd01896 DRG The developmentall 98.4 1.2E-06 2.6E-11 86.0 8.6 56 308-366 2-60 (233)
413 cd01861 Rab6 Rab6 subfamily. 98.4 1.2E-06 2.5E-11 80.2 8.0 53 308-363 2-59 (161)
414 cd04124 RabL2 RabL2 subfamily. 98.4 1.2E-06 2.7E-11 80.5 7.9 57 307-364 1-60 (161)
415 PRK12289 GTPase RsgA; Reviewed 98.3 6.4E-07 1.4E-11 92.7 6.4 27 57-83 173-199 (352)
416 KOG0393|consensus 98.3 3.9E-07 8.5E-12 85.4 4.3 116 56-216 4-124 (198)
417 cd04118 Rab24 Rab24 subfamily. 98.3 9.2E-07 2E-11 83.8 6.9 59 307-365 1-62 (193)
418 KOG0071|consensus 98.3 7.3E-06 1.6E-10 71.3 11.5 145 56-252 17-166 (180)
419 cd04166 CysN_ATPS CysN_ATPS su 98.3 2.9E-07 6.3E-12 88.7 3.4 54 308-363 1-87 (208)
420 cd01868 Rab11_like Rab11-like. 98.3 1.5E-06 3.3E-11 79.9 8.1 57 307-364 4-63 (165)
421 PRK12288 GTPase RsgA; Reviewed 98.3 5.9E-07 1.3E-11 92.9 5.8 25 57-81 206-230 (347)
422 PF04548 AIG1: AIG1 family; I 98.3 5.3E-06 1.1E-10 80.2 12.1 62 307-368 1-64 (212)
423 cd04127 Rab27A Rab27a subfamil 98.3 1.4E-06 3E-11 81.4 7.7 27 306-332 4-30 (180)
424 cd04154 Arl2 Arl2 subfamily. 98.3 1.1E-06 2.4E-11 81.8 6.9 57 305-364 13-69 (173)
425 smart00173 RAS Ras subfamily o 98.3 1.1E-06 2.4E-11 80.6 6.8 55 308-365 2-60 (164)
426 PTZ00258 GTP-binding protein; 98.3 7.3E-07 1.6E-11 92.9 6.1 80 305-394 20-119 (390)
427 TIGR02528 EutP ethanolamine ut 98.3 1.1E-06 2.4E-11 78.8 6.5 45 308-364 2-46 (142)
428 PF00009 GTP_EFTU: Elongation 98.3 4.3E-07 9.4E-12 86.0 4.1 135 306-467 3-184 (188)
429 cd01853 Toc34_like Toc34-like 98.3 6.9E-07 1.5E-11 88.2 5.2 61 304-366 29-92 (249)
430 cd01890 LepA LepA subfamily. 98.3 1.6E-06 3.5E-11 80.9 7.4 22 308-329 2-23 (179)
431 COG2262 HflX GTPases [General 98.3 5.1E-06 1.1E-10 85.2 11.4 138 304-470 190-356 (411)
432 cd04160 Arfrp1 Arfrp1 subfamil 98.3 1.2E-06 2.6E-11 80.7 6.4 56 308-364 1-61 (167)
433 PRK13796 GTPase YqeH; Provisio 98.3 8.5E-07 1.8E-11 92.7 5.7 39 56-94 160-203 (365)
434 cd04157 Arl6 Arl6 subfamily. 98.3 8.7E-07 1.9E-11 81.0 5.2 56 308-364 1-56 (162)
435 COG1163 DRG Predicted GTPase [ 98.3 1.2E-06 2.7E-11 86.7 6.3 62 304-368 61-125 (365)
436 cd01864 Rab19 Rab19 subfamily. 98.3 2.2E-06 4.8E-11 78.9 7.7 57 306-363 3-62 (165)
437 cd04136 Rap_like Rap-like subf 98.3 1.7E-06 3.6E-11 79.2 6.8 55 307-365 2-61 (163)
438 PRK09601 GTP-binding protein Y 98.3 1.1E-06 2.3E-11 90.7 5.9 78 307-394 3-100 (364)
439 cd04139 RalA_RalB RalA/RalB su 98.3 1.9E-06 4E-11 78.9 7.0 138 308-469 2-161 (164)
440 cd00157 Rho Rho (Ras homology) 98.3 9.7E-07 2.1E-11 81.5 5.1 56 307-365 1-60 (171)
441 cd00880 Era_like Era (E. coli 98.3 1.4E-06 3E-11 78.4 6.1 55 311-367 1-59 (163)
442 cd01863 Rab18 Rab18 subfamily. 98.3 2.7E-06 5.9E-11 77.8 7.9 57 307-364 1-60 (161)
443 KOG1489|consensus 98.3 1.9E-06 4.2E-11 85.0 7.2 78 306-393 196-277 (366)
444 cd04145 M_R_Ras_like M-Ras/R-R 98.3 2.6E-06 5.7E-11 78.0 7.8 54 307-364 3-61 (164)
445 cd01900 YchF YchF subfamily. 98.3 8E-07 1.7E-11 88.7 4.6 76 309-394 1-96 (274)
446 cd01862 Rab7 Rab7 subfamily. 98.3 2.7E-06 5.8E-11 78.6 7.9 55 308-363 2-59 (172)
447 cd04175 Rap1 Rap1 subgroup. T 98.3 3.5E-06 7.5E-11 77.5 8.5 55 307-365 2-61 (164)
448 KOG0460|consensus 98.2 1.2E-05 2.6E-10 80.0 12.4 100 137-248 117-219 (449)
449 TIGR00491 aIF-2 translation in 98.2 2.6E-06 5.6E-11 93.9 8.6 27 305-331 3-29 (590)
450 KOG0467|consensus 98.2 7.8E-06 1.7E-10 88.8 11.9 128 55-213 8-136 (887)
451 cd04112 Rab26 Rab26 subfamily. 98.2 3.6E-06 7.9E-11 79.8 8.5 53 308-363 2-60 (191)
452 TIGR00157 ribosome small subun 98.2 1.6E-06 3.5E-11 85.6 6.2 26 56-81 120-145 (245)
453 cd04176 Rap2 Rap2 subgroup. T 98.2 2.6E-06 5.7E-11 78.1 7.2 55 307-364 2-60 (163)
454 cd01891 TypA_BipA TypA (tyrosi 98.2 4.9E-06 1.1E-10 79.1 9.1 59 307-365 3-77 (194)
455 TIGR00092 GTP-binding protein 98.2 5.2E-06 1.1E-10 85.7 9.7 107 57-183 3-109 (368)
456 cd01865 Rab3 Rab3 subfamily. 98.2 4.2E-06 9.2E-11 77.1 8.3 57 307-364 2-61 (165)
457 cd00878 Arf_Arl Arf (ADP-ribos 98.2 2.9E-06 6.3E-11 77.4 7.0 54 308-364 1-54 (158)
458 smart00175 RAB Rab subfamily o 98.2 4.2E-06 9E-11 76.6 8.1 54 307-363 1-59 (164)
459 cd04144 Ras2 Ras2 subfamily. 98.2 4.7E-06 1E-10 78.9 8.6 53 308-364 1-58 (190)
460 cd04113 Rab4 Rab4 subfamily. 98.2 3.9E-06 8.5E-11 76.8 7.8 56 308-364 2-60 (161)
461 KOG0466|consensus 98.2 4.1E-06 8.9E-11 81.9 8.1 181 54-252 36-229 (466)
462 cd04137 RheB Rheb (Ras Homolog 98.2 2.4E-06 5.2E-11 79.9 6.4 55 307-364 2-60 (180)
463 KOG1491|consensus 98.2 2.7E-06 5.7E-11 84.8 6.8 107 55-183 19-126 (391)
464 cd04159 Arl10_like Arl10-like 98.2 2.6E-06 5.6E-11 77.0 6.2 53 309-364 2-55 (159)
465 cd04123 Rab21 Rab21 subfamily. 98.2 4.4E-06 9.6E-11 76.1 7.7 53 308-363 2-59 (162)
466 PLN03118 Rab family protein; P 98.2 5.7E-06 1.2E-10 79.7 8.8 59 305-365 13-74 (211)
467 cd01866 Rab2 Rab2 subfamily. 98.2 5.7E-06 1.2E-10 76.5 8.5 56 307-363 5-63 (168)
468 PRK10416 signal recognition pa 98.2 7.7E-05 1.7E-09 76.4 17.4 26 55-80 113-138 (318)
469 cd04135 Tc10 TC10 subfamily. 98.2 4.3E-06 9.4E-11 77.6 7.6 58 307-365 1-60 (174)
470 cd04125 RabA_like RabA-like su 98.2 7.7E-06 1.7E-10 77.2 9.4 57 307-364 1-60 (188)
471 cd01859 MJ1464 MJ1464. This f 98.2 3.8E-06 8.1E-11 76.9 7.0 35 56-90 101-135 (156)
472 cd04106 Rab23_lke Rab23-like s 98.2 3.5E-06 7.5E-11 77.1 6.7 55 308-363 2-61 (162)
473 KOG1487|consensus 98.2 4.7E-06 1E-10 79.9 7.6 91 55-183 58-148 (358)
474 PLN03127 Elongation factor Tu; 98.2 2.5E-06 5.5E-11 91.4 6.6 97 305-415 60-189 (447)
475 cd04149 Arf6 Arf6 subfamily. 98.2 2.8E-06 6.1E-11 78.8 6.0 56 305-364 8-64 (168)
476 cd04155 Arl3 Arl3 subfamily. 98.2 4.3E-06 9.3E-11 77.5 7.1 57 305-364 13-69 (173)
477 cd00154 Rab Rab family. Rab G 98.2 6.3E-06 1.4E-10 74.4 8.0 57 307-364 1-60 (159)
478 PRK12317 elongation factor 1-a 98.2 1.4E-06 3E-11 93.3 4.2 60 305-364 5-95 (425)
479 TIGR00991 3a0901s02IAP34 GTP-b 98.2 3.4E-06 7.3E-11 84.9 6.6 61 304-366 36-99 (313)
480 cd04107 Rab32_Rab38 Rab38/Rab3 98.2 5.7E-06 1.2E-10 79.1 7.9 54 308-364 2-61 (201)
481 cd04114 Rab30 Rab30 subfamily. 98.1 8.1E-06 1.8E-10 75.3 8.6 56 306-364 7-67 (169)
482 TIGR01425 SRP54_euk signal rec 98.1 1.7E-05 3.6E-10 83.8 11.8 70 137-216 183-254 (429)
483 cd04116 Rab9 Rab9 subfamily. 98.1 6.8E-06 1.5E-10 76.0 8.0 59 305-364 4-65 (170)
484 cd04110 Rab35 Rab35 subfamily. 98.1 9.2E-06 2E-10 77.6 9.0 58 306-364 6-66 (199)
485 TIGR00475 selB selenocysteine- 98.1 4.8E-06 1E-10 92.2 8.1 138 308-471 2-167 (581)
486 cd04132 Rho4_like Rho4-like su 98.1 5.6E-06 1.2E-10 78.0 7.4 55 307-364 1-60 (187)
487 PRK00007 elongation factor G; 98.1 4.7E-06 1E-10 94.5 8.0 98 305-416 9-140 (693)
488 TIGR00064 ftsY signal recognit 98.1 3.9E-05 8.5E-10 76.9 13.8 70 137-216 155-232 (272)
489 cd04108 Rab36_Rab34 Rab34/Rab3 98.1 8.9E-06 1.9E-10 75.6 8.4 54 308-364 2-60 (170)
490 KOG1424|consensus 98.1 2.6E-06 5.7E-11 89.0 5.1 39 56-94 314-352 (562)
491 smart00174 RHO Rho (Ras homolo 98.1 5.3E-06 1.1E-10 77.0 6.7 53 309-364 1-57 (174)
492 cd04109 Rab28 Rab28 subfamily. 98.1 9.5E-06 2.1E-10 78.5 8.8 54 308-364 2-61 (215)
493 cd01870 RhoA_like RhoA-like su 98.1 4.5E-06 9.7E-11 77.5 6.3 57 307-364 2-60 (175)
494 cd01886 EF-G Elongation factor 98.1 6.2E-06 1.4E-10 82.6 7.6 95 308-416 1-129 (270)
495 cd04119 RJL RJL (RabJ-Like) su 98.1 7.2E-06 1.6E-10 75.2 7.5 55 307-364 1-60 (168)
496 cd04146 RERG_RasL11_like RERG/ 98.1 6.5E-06 1.4E-10 75.8 7.1 54 308-365 1-59 (165)
497 cd04151 Arl1 Arl1 subfamily. 98.1 3.6E-06 7.7E-11 77.0 5.2 53 308-364 1-54 (158)
498 cd04122 Rab14 Rab14 subfamily. 98.1 1E-05 2.2E-10 74.7 8.0 54 307-364 3-62 (166)
499 cd04111 Rab39 Rab39 subfamily. 98.1 1.5E-05 3.2E-10 77.0 9.5 55 307-364 3-63 (211)
500 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 8.3E-06 1.8E-10 76.8 7.5 56 305-364 2-63 (183)
No 1
>KOG1954|consensus
Probab=100.00 E-value=3.2e-67 Score=511.80 Aligned_cols=384 Identities=73% Similarity=1.211 Sum_probs=360.4
Q ss_pred CccccCCC--CCCChhHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHh
Q psy11743 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
|+||+... +..+.+..+.+.+.|++||.++++|||+.|+|++|++|.+++++++++|+|+++|++++|||||||+|++
T Consensus 1 ~~~w~~~d~~~k~~~~~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle 80 (532)
T KOG1954|consen 1 MFSWLGKDSSRKKNPEVLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLE 80 (532)
T ss_pred CCcccccchhccCCcchHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHh
Confidence 78999865 3378889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccceEEEEEeCCCccccCC--------CCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCC
Q psy11743 79 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPF--------SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSG 150 (551)
Q Consensus 79 ~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g--------~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~ 150 (551)
.++++++++|+||||+|.++|+|++++.++| .+|+.+..||++|+++|.|.++|+++|.++++|||||+.++
T Consensus 81 ~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsg 160 (532)
T KOG1954|consen 81 QDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSG 160 (532)
T ss_pred CCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCccccc
Confidence 9999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHc
Q psy11743 151 EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l 230 (551)
.+|+++++++|..+++|+++++|.|++++|++++++++++.+++..++.+...+.+|+||+|.++.+++++++++++|++
T Consensus 161 eKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 161 EKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSL 240 (532)
T ss_pred chhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEE
Q psy11743 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVM 310 (551)
Q Consensus 231 ~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (551)
|.+.+.|.++.+|++|+|..++....++++|+.+.++|+..++.+++....+++|++++++++++
T Consensus 241 gkv~nTpev~rvYigSfw~hPl~~~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~ak--------------- 305 (532)
T KOG1954|consen 241 GKVMNTPEVSRVYIGSFWDHPLQDPANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAK--------------- 305 (532)
T ss_pred hhhcCCCcceeEEeeccccCcccCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999876543
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhhccc
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLVN 390 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (551)
T Consensus 306 -------------------------------------------------------------------------------- 305 (532)
T KOG1954|consen 306 -------------------------------------------------------------------------------- 305 (532)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhhccchHHHHHHHHHHHHH
Q psy11743 391 SPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYK 470 (551)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 470 (551)
++.++.+.|.+.+|.++++.++.++|++.+.
T Consensus 306 ---------------------------------------------vHAyiis~lkkemp~~~gk~~~kk~lidnl~---- 336 (532)
T KOG1954|consen 306 ---------------------------------------------VHAYIISCLKKEMPSVFGKEKKKKRLIDNLI---- 336 (532)
T ss_pred ---------------------------------------------HHHHHHHHHHHhhhhhhcchhhHHHHHHhHH----
Confidence 5667777777777776665555555555554
Q ss_pred HHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 471 QIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
+||.+++.+++|+.+|||+++.++.+|+..||++|..+++++++++|.++++|||+|
T Consensus 337 -----------------------~iy~~l~re~~Is~gDfPd~~~mre~l~~~df~kF~~lkpklle~vD~mla~di~~L 393 (532)
T KOG1954|consen 337 -----------------------DIYEKLQREHNISPGDFPDVEKMREFLQTQDFSKFKPLKPKLLEVVDDMLAYDIAEL 393 (532)
T ss_pred -----------------------HHHHHHhHhhcCCCcCCCCHHHHHHHHhcCChhhccccCccHHHHHHHHHHhhHHHH
Confidence 477788899999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy11743 551 L 551 (551)
Q Consensus 551 ~ 551 (551)
+
T Consensus 394 m 394 (532)
T KOG1954|consen 394 M 394 (532)
T ss_pred H
Confidence 5
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.3e-54 Score=439.30 Aligned_cols=330 Identities=22% Similarity=0.308 Sum_probs=277.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|.|+|||+||||||||+|+|+|++.+++++.|+.|||+. |+...|.+
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~----------------------y~~~~~~~---------- 50 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI----------------------YGDAEWLG---------- 50 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc----------------------cceeEEcC----------
Confidence 4899999999999999999999999999999999999997 45555555
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||+|+.....+.+.. .+.+++..++..||++|||+|++. ++++.|..+++.|++.++|+++|+||+|...
T Consensus 51 -~~f~lIDTgGl~~~~~~~l~~--~i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 51 -REFILIDTGGLDDGDEDELQE--LIREQALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred -ceEEEEECCCCCcCCchHHHH--HHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 679999999999755444443 378889999999999999999996 9999999999999988899999999999985
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhc
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAK 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~ 295 (551)
.++ ...++|++|+ +.+ +.+||.+|.|+ .+|++.+... ..
T Consensus 127 ~e~----~~~efyslG~--g~~----~~ISA~Hg~Gi-------------~dLld~v~~~---------------l~--- 165 (444)
T COG1160 127 AEE----LAYEFYSLGF--GEP----VPISAEHGRGI-------------GDLLDAVLEL---------------LP--- 165 (444)
T ss_pred hhh----hHHHHHhcCC--CCc----eEeehhhccCH-------------HHHHHHHHhh---------------cC---
Confidence 433 4567899998 544 56999988887 6676665221 00
Q ss_pred CCCCcc--ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEecCCCccccCCceeecCCCCC
Q psy11743 296 APYEDA--DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 296 ~~~~~~--~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
++.... ....+++|+++|+|||||||++|+|+|++ ++.+++.||||| .++ +.+++..+.++||+|++.+++..
T Consensus 166 ~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 166 PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred CcccccccccCCceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 111111 11368999999999999999999999999 799999999998 655 55679999999999999999999
Q ss_pred chhhhhhhHHHhhhhhhccccCc-------cccccccccccee---------EEEecccCCCCccchhhhhhhhhccChh
Q psy11743 371 RPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQTPEVAR---------VYIGSFWDQPLVHDVNRRLFEDRSSTSN 434 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------v~~~~~wd~~~~~~~~~~l~~~~~~~~~ 434 (551)
+++++|+. .++.++|.++|+ ..|.+.||..++. |+|+||||+ +++++..++
T Consensus 244 e~~E~~Sv---~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl----------~~~~~~~~~ 310 (444)
T COG1160 244 ESVEKYSV---ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDL----------VEEDEATME 310 (444)
T ss_pred cceEEEee---hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEcccc----------CCchhhHHH
Confidence 99999999 999999999964 5799999987654 899999998 444556677
Q ss_pred hHHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhhc
Q psy11743 435 SVQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQ 477 (551)
Q Consensus 435 ~~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~ 477 (551)
.+.+++..+|+ .|+|++++ ++|++ .++++.+.++|+++.++++
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccC
Confidence 78888888887 89999999 89999 9999999999999988654
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.5e-34 Score=311.19 Aligned_cols=328 Identities=19% Similarity=0.181 Sum_probs=225.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|+|+|+|++|||||||+|+|++...+.+...|+.|+++...... +.+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~----------------------~~~--------- 85 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE----------------------WNG--------- 85 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE----------------------ECC---------
Confidence 4489999999999999999999998876677778777776543211 111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+..... .+ ...+..++..++..||++|+|+|+++ +.+..+..+...++..++|+++|+||+|+.
T Consensus 86 --~~~~l~DT~G~~~~~~-~~--~~~~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 86 --RRFTVVDTGGWEPDAK-GL--QASVAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred --cEEEEEeCCCcCCcch-hH--HHHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 4588999999874211 11 11255667778899999999999996 677777888888888899999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
.... ....+|.++. +. .+++||++|.|+ ++|++.+......
T Consensus 160 ~~~~----~~~~~~~~g~--~~----~~~iSA~~g~gi-------------~eL~~~i~~~l~~---------------- 200 (472)
T PRK03003 160 RGEA----DAAALWSLGL--GE----PHPVSALHGRGV-------------GDLLDAVLAALPE---------------- 200 (472)
T ss_pred ccch----hhHHHHhcCC--CC----eEEEEcCCCCCc-------------HHHHHHHHhhccc----------------
Confidence 5321 1234455554 22 257999999998 4555554211000
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
..........+++++++|.|||||||++|+|++..+ ..++..++||+ . ..+.+++..+.++||||+........
T Consensus 201 -~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~ 277 (472)
T PRK03003 201 -VPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQAS 277 (472)
T ss_pred -ccccccccccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccc
Confidence 000000112468999999999999999999999873 57888999997 2 33556788889999999976655444
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
+.+.|+. .++..++..+|+ ..+.+.++ ..++.|+|+||||+.... ....
T Consensus 278 ~~e~~~~---~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~------------~~~~ 342 (472)
T PRK03003 278 GHEYYAS---LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED------------RRYY 342 (472)
T ss_pred hHHHHHH---HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh------------HHHH
Confidence 5566654 334445555553 33444433 456779999999983110 0011
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
....+.+.+. .++|++++ ++|.+ ++++..+.+.++++++++
T Consensus 343 ~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 343 LEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 2233333333 46787777 89999 999999999998877753
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=8.3e-35 Score=311.14 Aligned_cols=326 Identities=21% Similarity=0.253 Sum_probs=232.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++...+.+...++.|+++...... +.+ .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~----------------------~~~-----------~ 47 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAE----------------------WGG-----------R 47 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEE----------------------ECC-----------e
Confidence 4899999999999999999998876677788888877543211 111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.+|||||+.... ..+ ...+..++..++..+|++++|+|++. +.+..+..+.+++++.++|+++|+||+|+...+
T Consensus 48 ~~~liDTpG~~~~~-~~~--~~~~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 48 EFILIDTGGIEEDD-DGL--DKQIREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred EEEEEECCCCCCcc-hhH--HHHHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 58999999986421 111 12356677788899999999999996 788888889999998899999999999997644
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAP 297 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 297 (551)
.. ...++.++. .+.+++||.+|.|+ +++++.+...... ..
T Consensus 124 ~~----~~~~~~lg~------~~~~~vSa~~g~gv-------------~~ll~~i~~~l~~-----------------~~ 163 (429)
T TIGR03594 124 AV----AAEFYSLGF------GEPIPISAEHGRGI-------------GDLLDAILELLPE-----------------EE 163 (429)
T ss_pred cc----HHHHHhcCC------CCeEEEeCCcCCCh-------------HHHHHHHHHhcCc-----------------cc
Confidence 21 123445543 24678999998887 4455544211000 00
Q ss_pred CCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eE--EEEecCCCccccCCceeecCCCCCchhh
Q psy11743 298 YEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPGNALVVDPKKQFRPLD 374 (551)
Q Consensus 298 ~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~--~~~~~~~~~~l~dt~gi~~~~~~~~~~~ 374 (551)
.........++++++|.+|+||||++|+|++.+ +..++..++||+ .. .+.+++..+.++||||+.+.......++
T Consensus 164 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e 241 (429)
T TIGR03594 164 EEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE--RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVE 241 (429)
T ss_pred ccccccCCceEEEEECCCCCCHHHHHHHHHCCC--eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHH
Confidence 001112356799999999999999999999987 477889999996 32 3445777899999999998877767788
Q ss_pred hhhhHHHhhhhhhccccCc-------ccccccccc---------cceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 375 KFGNSFLNRFQCSLVNSPV-------LKGKVLQTP---------EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
+|+. .++..++..+|+ ..|.+.++. .++.|+|+||||+. . +...++.+..
T Consensus 242 ~~~~---~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~-~----------~~~~~~~~~~ 307 (429)
T TIGR03594 242 KYSV---LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV-K----------DEKTREEFKK 307 (429)
T ss_pred HHHH---HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC-C----------CHHHHHHHHH
Confidence 8775 556666666664 345555442 46679999999983 1 1111222444
Q ss_pred HHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 439 YIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 439 ~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
.+...+. .++|++++ ++|.+ +++++.+.++|+.+.+++
T Consensus 308 ~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 308 ELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred HHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 4444443 46788877 89999 999999999998776653
No 5
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.6e-34 Score=309.37 Aligned_cols=325 Identities=21% Similarity=0.250 Sum_probs=230.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|++|||||||+|+|++...+.+...++.|+++...... +.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~----------------------~~~----------- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAE----------------------WLG----------- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEE----------------------ECC-----------
Confidence 68999999999999999999998876667777777776533211 111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+..... .+ ...+..++..++..+|++|+|+|+.. +.+..+..+..++++.++|+++|+||+|+...
T Consensus 49 ~~~~liDT~G~~~~~~-~~--~~~~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~ 124 (435)
T PRK00093 49 REFILIDTGGIEPDDD-GF--EKQIREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILVVNKVDGPDE 124 (435)
T ss_pred cEEEEEECCCCCCcch-hH--HHHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEEEECccCccc
Confidence 4589999999986221 11 11245556678899999999999986 77888888888888889999999999997653
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
+.. ...++.++. . ..+++||.+|.|+ +++++.+..... .
T Consensus 125 ~~~----~~~~~~lg~--~----~~~~iSa~~g~gv-------------~~l~~~I~~~~~------------------~ 163 (435)
T PRK00093 125 EAD----AYEFYSLGL--G----EPYPISAEHGRGI-------------GDLLDAILEELP------------------E 163 (435)
T ss_pred hhh----HHHHHhcCC--C----CCEEEEeeCCCCH-------------HHHHHHHHhhCC------------------c
Confidence 221 123344443 1 2477999998887 455555522000 0
Q ss_pred CCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EE--EEecCCCccccCCceeecCCCCCchh
Q psy11743 297 PYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IA--VMYDEREGSVPGNALVVDPKKQFRPL 373 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~--~~~~~~~~~l~dt~gi~~~~~~~~~~ 373 (551)
.........+++++++|.||+||||++|+|++.. ++.++..+++|+. .. +.+++..+.++||||+.++......+
T Consensus 164 ~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~ 241 (435)
T PRK00093 164 EEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE--RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGV 241 (435)
T ss_pred cccccccccceEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHH
Confidence 0000012356899999999999999999999987 5788999999973 32 44678889999999999888777778
Q ss_pred hhhhhHHHhhhhhhccccCc-------ccccccccc---------cceeEEEecccCCCCccchhhhhhhhhccChhhHH
Q psy11743 374 DKFGNSFLNRFQCSLVNSPV-------LKGKVLQTP---------EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQ 437 (551)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~ 437 (551)
++|+. .++..++..+|+ ..|.+.++. ..+.|+|+||||+.. . ...+.+.
T Consensus 242 e~~~~---~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~----------~--~~~~~~~ 306 (435)
T PRK00093 242 EKYSV---IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD----------E--KTMEEFK 306 (435)
T ss_pred HHHHH---HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC----------H--HHHHHHH
Confidence 88875 555566666654 345555543 356699999999831 0 1112234
Q ss_pred HHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 438 AYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 438 ~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
+++...+. .++|++++ ++|.+ +++++.+.++++.+++++
T Consensus 307 ~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i 350 (435)
T PRK00093 307 KELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRI 350 (435)
T ss_pred HHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcC
Confidence 44444443 46788888 88999 999999999998877653
No 6
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.4e-33 Score=317.31 Aligned_cols=330 Identities=18% Similarity=0.172 Sum_probs=229.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|++.....+...|+.|+++..... .+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~----------------------~~~~--------- 322 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDA----------------------EWAG--------- 322 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEE----------------------EECC---------
Confidence 347899999999999999999999887777788888877754321 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.... ..+. ..+..++..++..+|++|+|+|++. +++..+..+.+.++..++|+++|+||+|+.
T Consensus 323 --~~~~liDT~G~~~~~-~~~~--~~~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 --TDFKLVDTGGWEADV-EGID--SAIASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred --EEEEEEeCCCcCCCC-ccHH--HHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 458999999987422 1121 2356677788899999999999986 788888889999998999999999999987
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
.... ....+|.++. + ..+++||++|.|+ .+|++.+...... .
T Consensus 397 ~~~~----~~~~~~~lg~--~----~~~~iSA~~g~GI-------------~eLl~~i~~~l~~-----------~---- 438 (712)
T PRK09518 397 ASEY----DAAEFWKLGL--G----EPYPISAMHGRGV-------------GDLLDEALDSLKV-----------A---- 438 (712)
T ss_pred cchh----hHHHHHHcCC--C----CeEEEECCCCCCc-------------hHHHHHHHHhccc-----------c----
Confidence 5322 1234555654 2 2367999999998 4555554211000 0
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
............++++++|.|||||||++|+|++.. ...++..++||+. ..+.+++.++.++||||+........
T Consensus 439 ~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~--~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~ 516 (712)
T PRK09518 439 EKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE--RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT 516 (712)
T ss_pred cccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc--ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch
Confidence 000000011245899999999999999999999997 3577889999972 23567888899999999987665555
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
+.+.|+. .++..++..+|+ ..+.+.++ ..++.|+|+||||+.-. + ..+.
T Consensus 517 ~~e~~~~---~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~----------~--~~~~ 581 (712)
T PRK09518 517 GAEYYSS---LRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE----------F--RRQR 581 (712)
T ss_pred hHHHHHH---HHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh----------h--HHHH
Confidence 5566654 445556666654 33444443 34677999999998311 0 0111
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
+...+...+. .++|++++ ++|.+ ++|++.+.+++.++.+++
T Consensus 582 ~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i 627 (712)
T PRK09518 582 LERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRI 627 (712)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 2223333332 56777777 89999 999999999998777643
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=249.99 Aligned_cols=242 Identities=22% Similarity=0.264 Sum_probs=191.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|+||+|||||+|+|+|++..+++..+++|+|.+..-.. +++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------------~~~--------- 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------------RDG--------- 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------------ECC---------
Confidence 4689999999999999999999999999999999999998754221 111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+.+.+|||+|+... ..+....++.+. +..+++.||++++|+|++. +++.++..++..+.+.++++++|+||||
T Consensus 226 --~~~~liDTAGiRrk--~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 226 --RKYVLIDTAGIRRK--GKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRGIVIVVNKWD 300 (444)
T ss_pred --eEEEEEECCCCCcc--cccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 67999999999873 334444444443 3467899999999999997 9999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 213 MVDHQ-QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 213 l~~~~-~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
+++.. ..++.+...+.+ .+....++|++++||++|.++ ..++ +.+.+...++.++.+++.+|+++..+
T Consensus 301 l~~~~~~~~~~~k~~i~~--~l~~l~~a~i~~iSA~~~~~i-----~~l~----~~i~~~~~~~~~ri~Ts~LN~~l~~a 369 (444)
T COG1160 301 LVEEDEATMEEFKKKLRR--KLPFLDFAPIVFISALTGQGL-----DKLF----EAIKEIYECATRRISTSLLNRVLEDA 369 (444)
T ss_pred cCCchhhHHHHHHHHHHH--HhccccCCeEEEEEecCCCCh-----HHHH----HHHHHHHHHhccccCHHHHHHHHHHH
Confidence 98752 333334444433 233567889999999999998 4444 33555567788899999999999999
Q ss_pred hhhcCCCCc-----------cccCCCcEEEEEeecC-CChhHHHHHHHhC-----CCCcccccCCCccc
Q psy11743 292 RLAKAPYED-----------ADFDAKPTVMLVGQYS-TGKTTFIRYLLER-----DFPGIHIGPEPTTD 343 (551)
Q Consensus 292 ~~~~~~~~~-----------~~~~~~~~~~~~g~~~-~gKss~~n~l~~~-----~~~~~~v~~~~~~t 343 (551)
...+||+.. |....||+|+++|+.+ .-.-||.+||.++ +|.|+|+...++..
T Consensus 370 ~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~ 438 (444)
T COG1160 370 VAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKK 438 (444)
T ss_pred HHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecC
Confidence 998876542 7889999999999654 5599999999988 67788887776554
No 8
>KOG1954|consensus
Probab=99.93 E-value=5.3e-25 Score=216.23 Aligned_cols=227 Identities=50% Similarity=0.829 Sum_probs=176.6
Q ss_pred hhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCch
Q psy11743 293 LAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRP 372 (551)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~ 372 (551)
...+...+.+...+|.|.++|+.++||||+||||+.++++|..++++|.|.+++.+++|+...++++++.+.+++++|++
T Consensus 45 f~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 45 FHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 33344456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhhccccCcc----------------------------------------------------------
Q psy11743 373 LDKFGNSFLNRFQCSLVNSPVL---------------------------------------------------------- 394 (551)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 394 (551)
|.+||+.|++|+.|+..++.++
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi 204 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVI 204 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHH
Confidence 9999999999999988776431
Q ss_pred -----------------------------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHH
Q psy11743 395 -----------------------------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAY 439 (551)
Q Consensus 395 -----------------------------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~ 439 (551)
+|+.+.++++++||++|+||.|++..++++||++++++ +..+
T Consensus 205 ~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~~~a~rrLfeaee~d---l~rD 281 (532)
T KOG1954|consen 205 DALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQDPANRRLFEAEEQD---LFRD 281 (532)
T ss_pred HHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeeccccCcccCccHHHHHHHHHHH---HHHH
Confidence 28999999999999999999999999999999997654 3333
Q ss_pred HHHHHHhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHH
Q psy11743 440 IISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQEL 519 (551)
Q Consensus 440 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (551)
+....++.+-+....-.+++++.+..+.+..++.+ .||.+||+.+.+.+.+.++. ..|. ..+.. .+
T Consensus 282 lq~lp~ka~~rKind~ikrAr~akvHAyiis~lkk--emp~~~gk~~~kk~lidnl~----~iy~-------~l~re-~~ 347 (532)
T KOG1954|consen 282 LQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKK--EMPSVFGKEKKKKRLIDNLI----DIYE-------KLQRE-HN 347 (532)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchhhHHHHHHhHH----HHHH-------HHhHh-hc
Confidence 33322222221111112223333333445555655 78999999988888655554 4444 33334 68
Q ss_pred hccCCCCCCCccchHHH
Q psy11743 520 LQHHDFTKFQTLRPRLI 536 (551)
Q Consensus 520 ~~~~d~~~~~~~~~~~~ 536 (551)
+.++|||+...+++.++
T Consensus 348 Is~gDfPd~~~mre~l~ 364 (532)
T KOG1954|consen 348 ISPGDFPDVEKMREFLQ 364 (532)
T ss_pred CCCcCCCCHHHHHHHHh
Confidence 89999999988887654
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=9.1e-25 Score=212.53 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=122.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+||||||||+|+|+|.+.++++..|++|+.++..+...++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~------------------------------- 53 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN------------------------------- 53 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-------------------------------
Confidence 3467999999999999999999999999999999999999988776542
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
.++.+|||||+..+ +..+.+ -+.+.++..+..+|+++||+|+.. +....+..+++.++..+.|+++++||+|..
T Consensus 54 --~QiIfvDTPGih~p-k~~l~~--~m~~~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 54 --AQIIFVDTPGIHKP-KHALGE--LMNKAARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred --ceEEEEeCCCCCCc-chHHHH--HHHHHHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 46999999999986 333332 367788889999999999999996 788888889999988778999999999999
Q ss_pred CHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+++. +.... +.. .. ..++..++++||++|.++
T Consensus 128 ~~~~~l~~~~-~~~---~~--~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 128 KPKTVLLKLI-AFL---KK--LLPFKEIVPISALKGDNV 160 (298)
T ss_pred CcHHHHHHHH-HHH---Hh--hCCcceEEEeeccccCCH
Confidence 8776 33222 221 11 223446777888666654
No 10
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.8e-23 Score=223.85 Aligned_cols=237 Identities=22% Similarity=0.257 Sum_probs=170.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEE-eCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVM-YDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~-~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++...... ++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~------------------------------- 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG------------------------------- 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-------------------------------
Confidence 358999999999999999999999986555666666666543211 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHH--HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVL--EWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~--~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+..... ...+.++...+ ..++.++|++++|+|++. +.+.++..++..+...++|+++|+||+
T Consensus 259 ---~~~~l~DTaG~~~~~~--~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piIiV~NK~ 332 (472)
T PRK03003 259 ---KTWRFVDTAGLRRRVK--QASGHEYYASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALVLAFNKW 332 (472)
T ss_pred ---EEEEEEECCCcccccc--ccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3478999999864221 11112233333 346789999999999996 788888888888887899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+................+. ...+.+++++||++|.|+ ..++. .+.+.+..+..+++++.+|+++..+
T Consensus 333 Dl~~~~~~~~~~~~i~~~l~---~~~~~~~~~~SAk~g~gv-----~~lf~----~i~~~~~~~~~~i~t~~ln~~~~~~ 400 (472)
T PRK03003 333 DLVDEDRRYYLEREIDRELA---QVPWAPRVNISAKTGRAV-----DKLVP----ALETALESWDTRIPTGRLNAWLGEL 400 (472)
T ss_pred ccCChhHHHHHHHHHHHhcc---cCCCCCEEEEECCCCCCH-----HHHHH----HHHHHHHHhcccCCHHHHHHHHHHH
Confidence 99864322111111111122 234568899999999998 44442 2445555666788999999999999
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
...++||. .|+..+||+|++++ ++--+.+|.+||.++ ++.|+|+...++
T Consensus 401 ~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~-~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~ 465 (472)
T PRK03003 401 VAATPPPVRGGKQPRILFATQASTRPPTFVLFT-TGFLEAGYRRFLERRLRETFGFEGSPIRISVR 465 (472)
T ss_pred HHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEe-CCCCChHHHHHHHHHHHHHcCCCcceEEEEEE
Confidence 88888874 38899999999994 444589999999887 667788877664
No 11
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=8.8e-23 Score=218.71 Aligned_cols=239 Identities=22% Similarity=0.230 Sum_probs=170.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|++|+|||||+|+|++.+...+...+++|++........ .+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~----------------------~~--------- 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER----------------------DG--------- 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE----------------------CC---------
Confidence 45899999999999999999999988655556666665554221110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+..... +....+.. .....++..+|++|+|+|+.. +.+.++..++..+.+.++|+++|+||+|
T Consensus 221 --~~~~lvDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~ivv~NK~D 295 (435)
T PRK00093 221 --QKYTLIDTAGIRRKGK--VTEGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRALVIVVNKWD 295 (435)
T ss_pred --eeEEEEECCCCCCCcc--hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 4589999999976322 22122222 223457899999999999996 8889998888888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHh
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRAR 292 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~ 292 (551)
+.+.+...+........+. ..+..|++++||++|.|+ ..++ +.+.+....+..++++..+|+++..+.
T Consensus 296 l~~~~~~~~~~~~~~~~l~---~~~~~~i~~~SA~~~~gv-----~~l~----~~i~~~~~~~~~~i~t~~ln~~l~~~~ 363 (435)
T PRK00093 296 LVDEKTMEEFKKELRRRLP---FLDYAPIVFISALTGQGV-----DKLL----EAIDEAYENANRRISTSVLNRVLEEAV 363 (435)
T ss_pred CCCHHHHHHHHHHHHHhcc---cccCCCEEEEeCCCCCCH-----HHHH----HHHHHHHHHHcCcCChHHHHHHHHHHH
Confidence 9865433222222211222 345678999999999988 3332 223333445566778889999999887
Q ss_pred hhcCCCC-----------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 293 LAKAPYE-----------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 293 ~~~~~~~-----------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
..++|+. .|....||+|+++++.... +.+|.+||.++ ++.|+|+....+
T Consensus 364 ~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~ 429 (435)
T PRK00093 364 ERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFR 429 (435)
T ss_pred HcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEe
Confidence 7777764 2778899999999975544 99999999887 667788777664
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=9.6e-23 Score=218.09 Aligned_cols=236 Identities=22% Similarity=0.250 Sum_probs=166.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...+++|++........ + +
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-----------------~-----~--------- 219 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-----------------N-----G--------- 219 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-----------------C-----C---------
Confidence 44789999999999999999999988655566666665554321110 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+..... +....+.. .....++..+|++++|+|+.. +.+.++..++..+.+.++|+++|+||+|
T Consensus 220 --~~~~liDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~D 294 (429)
T TIGR03594 220 --KKYLLIDTAGIRRKGK--VTEGVEKYSVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALVIVVNKWD 294 (429)
T ss_pred --cEEEEEECCCcccccc--chhhHHHHHHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 3589999999976322 21112222 223457899999999999996 8888888888888888999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 213 MV-DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 213 l~-~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
+. +.+...+ +...+.. .+......+++++||++|.|+ ..++ +.+.+.+..+..++++..+|+++..+
T Consensus 295 l~~~~~~~~~-~~~~~~~--~~~~~~~~~vi~~SA~~g~~v-----~~l~----~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 295 LVKDEKTREE-FKKELRR--KLPFLDFAPIVFISALTGQGV-----DKLL----DAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred cCCCHHHHHH-HHHHHHH--hcccCCCCceEEEeCCCCCCH-----HHHH----HHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 98 4333322 2222211 112335578999999999998 3333 22334445566677888999999988
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC-----CCCcccccC
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER-----DFPGIHIGP 338 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~-----~~~~~~v~~ 338 (551)
...++|+. .|....||+|+++++.... +.+|.+||.++ ++.|+|+..
T Consensus 363 ~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~ 426 (429)
T TIGR03594 363 VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRL 426 (429)
T ss_pred HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 77777763 2778999999999975544 99999999887 556676654
No 13
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.1e-21 Score=221.06 Aligned_cols=237 Identities=19% Similarity=0.205 Sum_probs=168.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEE-eCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVM-YDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~-~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++...... ++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~------------------------------- 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG------------------------------- 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-------------------------------
Confidence 358999999999999999999999986556666766766543211 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+...... ..+.++... ...++..+|++++|+|+.. +.+.++..++..+.+.++|+++|+||+
T Consensus 498 ---~~~~liDTaG~~~~~~~--~~~~e~~~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piIiV~NK~ 571 (712)
T PRK09518 498 ---EDWLFIDTAGIKRRQHK--LTGAEYYSSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALVLVFNKW 571 (712)
T ss_pred ---CEEEEEECCCcccCccc--chhHHHHHHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEEch
Confidence 34789999998753221 111223332 2355789999999999996 788888888888877889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+.+..... .+...+... +...++.+++++||++|.|+ ..+++ .+.+.+..+.+++++..+|+++..+
T Consensus 572 DL~~~~~~~-~~~~~~~~~--l~~~~~~~ii~iSAktg~gv-----~~L~~----~i~~~~~~~~~~i~T~~Ln~~l~~~ 639 (712)
T PRK09518 572 DLMDEFRRQ-RLERLWKTE--FDRVTWARRVNLSAKTGWHT-----NRLAP----AMQEALESWDQRIPTGKLNAFLGKI 639 (712)
T ss_pred hcCChhHHH-HHHHHHHHh--ccCCCCCCEEEEECCCCCCH-----HHHHH----HHHHHHHHhcccCChHHHHHHHHHH
Confidence 998754322 222222111 11345678899999999998 33332 2333444556678899999999988
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
...++|+. .|...+||+|+++++ .--+.+|.+||.++ ++.|+|+....+
T Consensus 640 ~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~-~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~ 704 (712)
T PRK09518 640 QAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT-GFLEHGYRRFLERSLREEFGFEGSPIQISVN 704 (712)
T ss_pred HhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC-CCCChHHHHHHHHHHHHHcCCccceEEEEEE
Confidence 88777764 388899999999954 44488999999887 667788877654
No 14
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.83 E-value=8.2e-20 Score=168.12 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEE
Q psy11743 165 LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARV 242 (551)
Q Consensus 165 ~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v 242 (551)
++..++.+|++++|+|++. +....+..+.+.+.. .++|+++|+||+|+.++++... +...+ .. ..+. .++
T Consensus 2 ~~~~l~~aD~il~VvD~~~-p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~-~~~~~---~~--~~~~-~~~ 73 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARD-PMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTAR-WVKIL---SK--EYPT-IAF 73 (157)
T ss_pred hhHhhhhCCEEEEEEECCC-CccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHH-HHHHH---hc--CCcE-EEE
Confidence 4667899999999999996 455555566666654 3489999999999987654322 22222 11 1121 257
Q ss_pred EecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHH
Q psy11743 243 YIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTF 322 (551)
Q Consensus 243 ~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~ 322 (551)
.+||+.+.+. ++|++.+..+.. ... ...+.+++++|.|||||||+
T Consensus 74 ~iSa~~~~~~-------------~~L~~~l~~~~~---------------~~~-------~~~~~~v~~~G~~nvGKStl 118 (157)
T cd01858 74 HASINNPFGK-------------GSLIQLLRQFSK---------------LHS-------DKKQISVGFIGYPNVGKSSI 118 (157)
T ss_pred EeeccccccH-------------HHHHHHHHHHHh---------------hhc-------cccceEEEEEeCCCCChHHH
Confidence 7899888776 445555532211 000 01356899999999999999
Q ss_pred HHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 323 IRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 323 ~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
+|+|.+.. .+.+++.||+|+......-+..+.++||||+
T Consensus 119 iN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 119 INTLRSKK--VCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred HHHHhcCC--ceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 99999987 5899999999987665544567899999996
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=1.6e-20 Score=170.36 Aligned_cols=146 Identities=23% Similarity=0.245 Sum_probs=100.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|+||||||||+|+|+|.+. .+..-|+.|.++....+.- +. .
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~-----------------~~----------------~ 47 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKL-----------------GD----------------Q 47 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEE-----------------TT----------------E
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEe-----------------cC----------------c
Confidence 699999999999999999999984 4677788888876554331 11 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
.+.+|||||+.+..... .-.+....++ ...|++++|+|+++ .+....+..++.+.++|+++|+||+|...
T Consensus 48 ~~~lvDlPG~ysl~~~s-----~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 48 QVELVDLPGIYSLSSKS-----EEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp EEEEEE----SSSSSSS-----HHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred eEEEEECCCcccCCCCC-----cHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 59999999987743221 1234445554 69999999999985 35556777888889999999999999875
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.....-....+...++ .|++++||.++.|+
T Consensus 120 ~~g~~id~~~Ls~~Lg-------~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 120 RKGIEIDAEKLSERLG-------VPVIPVSARTGEGI 149 (156)
T ss_dssp HTTEEE-HHHHHHHHT-------S-EEEEBTTTTBTH
T ss_pred HcCCEECHHHHHHHhC-------CCEEEEEeCCCcCH
Confidence 4321101112222232 47999999999887
No 16
>KOG1424|consensus
Probab=99.82 E-value=1.6e-19 Score=185.62 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=133.8
Q ss_pred cccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHccc
Q psy11743 155 VDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGK 232 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~ 232 (551)
++++.+++++++..++++|+||.++||++ ++......+.+++.+. .+..++++||+||+++++.. .|..+|.
T Consensus 158 FErNLE~WRQLWRVlErSDivvqIVDARn-Pllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~-aWa~YF~---- 231 (562)
T KOG1424|consen 158 FERNLEIWRQLWRVLERSDIVVQIVDARN-PLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRV-AWAEYFR---- 231 (562)
T ss_pred hhhCHHHHHHHHHHHhhcceEEEEeecCC-ccccCChhHHHHHhccccccceEEEEehhhcCCHHHHH-HHHHHHH----
Confidence 56778899999999999999999999997 5444444555666543 46789999999999987643 3555553
Q ss_pred ccCCCCceEEEecccCCCCCccc-----ccc----------cccchhhhhhhhhhhcchhhhhhhhhHHH-HHHHhhhcC
Q psy11743 233 VLQTPEVARVYIGSFWDQPLVHD-----VNR----------RLFEDEEQDLFKDLQSLPRNAALRKLNDL-IKRARLAKA 296 (551)
Q Consensus 233 l~~~~~~~~v~iSa~~g~~~~~~-----~~~----------~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~-~~~~~~~~~ 296 (551)
....+++|.||+-....... +.+ ..+..+.++++.....-...+ ..+... +-.+ ..+
T Consensus 232 ---~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~--~~v~~~~~~s~--~~~ 304 (562)
T KOG1424|consen 232 ---QNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEI--EDVEQLRLISA--MEP 304 (562)
T ss_pred ---hcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccch--hhHHhhhhhhc--ccc
Confidence 23368899999762111000 000 011111111111111000000 001111 0000 001
Q ss_pred CCCccccCC-CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhh
Q psy11743 297 PYEDADFDA-KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDK 375 (551)
Q Consensus 297 ~~~~~~~~~-~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~ 375 (551)
. ......+ ..+|++||.|||||||+||+|.|++ .+.|+..||.||+.++.+-...+.|+|+||++.|+...+..+.
T Consensus 305 ~-~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~K--kVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~em 381 (562)
T KOG1424|consen 305 T-PTGERYKDVVTVGFVGYPNVGKSSTINALVGRK--KVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEM 381 (562)
T ss_pred C-CCCcCCCceeEEEeecCCCCchhHHHHHHhcCc--eeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHH
Confidence 1 1112222 4799999999999999999999999 6999999999999999999999999999999999976655444
Q ss_pred hh
Q psy11743 376 FG 377 (551)
Q Consensus 376 ~~ 377 (551)
+.
T Consensus 382 vl 383 (562)
T KOG1424|consen 382 VL 383 (562)
T ss_pred HH
Confidence 43
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=5.9e-19 Score=176.98 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=108.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|++|||||||+|+|+|.+...++..|++|++....+..... .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~---------------------------------~ 48 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA---------------------------------S 48 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC---------------------------------c
Confidence 6899999999999999999999987777777777776554433210 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
++.++||||+..... .+. ..+.+.+..++..+|++++|+|++. ..+.. ..++..+...+.|+++|+||+|+....
T Consensus 49 qii~vDTPG~~~~~~-~l~--~~~~~~~~~~l~~aDvvl~VvD~~~-~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~ 123 (270)
T TIGR00436 49 QIIFIDTPGFHEKKH-SLN--RLMMKEARSAIGGVDLILFVVDSDQ-WNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKD 123 (270)
T ss_pred EEEEEECcCCCCCcc-hHH--HHHHHHHHHHHhhCCEEEEEEECCC-CCchH-HHHHHHHHhcCCCEEEEEECeeCCCHH
Confidence 489999999976421 111 1134456678899999999999986 33333 566777777889999999999998665
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
........... . .+..+++++||++|.|+
T Consensus 124 ~~~~~~~~~~~-~-----~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 124 KLLPLIDKYAI-L-----EDFKDIVPISALTGDNT 152 (270)
T ss_pred HHHHHHHHHHh-h-----cCCCceEEEecCCCCCH
Confidence 54333222211 1 12236889999999988
No 18
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=178.39 Aligned_cols=150 Identities=25% Similarity=0.251 Sum_probs=114.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|+||||||||+|+|++++.++|.+-||+|+|....... +.|
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~------i~G------------------------ 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN------LNG------------------------ 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE------ECC------------------------
Confidence 35689999999999999999999999999999999999999765322 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.++||+|+.+..+ .+++ .. .+..+..+++||+||+|+|++. +.+..+..++. +...++|+++|+||+|+
T Consensus 265 ---~pv~l~DTAGiRet~d-~VE~-iG-IeRs~~~i~~ADlvL~v~D~~~-~~~~~d~~~~~-~~~~~~~~i~v~NK~DL 336 (454)
T COG0486 265 ---IPVRLVDTAGIRETDD-VVER-IG-IERAKKAIEEADLVLFVLDASQ-PLDKEDLALIE-LLPKKKPIIVVLNKADL 336 (454)
T ss_pred ---EEEEEEecCCcccCcc-HHHH-HH-HHHHHHHHHhCCEEEEEEeCCC-CCchhhHHHHH-hcccCCCEEEEEechhc
Confidence 4589999999997433 2221 11 2345677899999999999996 57777777777 55668999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+...... + .....+.+.+|+++|.|+
T Consensus 337 ~~~~~~~~~-----~------~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 337 VSKIELESE-----K------LANGDAIISISAKTGEGL 364 (454)
T ss_pred ccccccchh-----h------ccCCCceEEEEecCccCH
Confidence 976542111 1 112236789999999987
No 19
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=6.5e-18 Score=171.49 Aligned_cols=154 Identities=23% Similarity=0.312 Sum_probs=113.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|.+++.+...+++|++....+...+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-------------------------------- 52 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-------------------------------- 52 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------------------------------
Confidence 457999999999999999999999987777777777777655443210
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC-
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV- 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~- 214 (551)
.++.++||||+.+... .+. ..+...+...+..+|++++|+|+.+ .++..+..+++.+...+.|+++|+||+|+.
T Consensus 53 -~qi~~iDTPG~~~~~~-~l~--~~~~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 53 -AQIIFVDTPGIHKPKR-ALN--RAMNKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred -ceEEEEECCCCCCchh-HHH--HHHHHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 3589999999976431 111 1244566677899999999999996 677777788888877789999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.++.......... ..+..+++.+||+++.|+
T Consensus 128 ~~~~l~~~~~~l~~------~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 128 DKEELLPLLEELSE------LMDFAEIVPISALKGDNV 159 (292)
T ss_pred CHHHHHHHHHHHHh------hCCCCeEEEecCCCCCCH
Confidence 44444333322221 123457889999998887
No 20
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=154.90 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=113.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..|-|+++|++|||||||||+|+|+. .+.++-.||-|+.-..... +
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~-------------------~------------- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV-------------------D------------- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe-------------------c-------------
Confidence 367899999999999999999999965 5556677777754432211 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+||.||+.-..-.. +....+...+..++ .+..++++++|++. ++...|.++++++...+.|+++|+|
T Consensus 70 ----~~~~lVDlPGYGyAkv~k-~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l~~~~i~~~vv~t 143 (200)
T COG0218 70 ----DELRLVDLPGYGYAKVPK-EVKEKWKKLIEEYLEKRANLKGVVLLIDARH-PPKDLDREMIEFLLELGIPVIVVLT 143 (200)
T ss_pred ----CcEEEEeCCCcccccCCH-HHHHHHHHHHHHHHhhchhheEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 238899999998633211 22334566666666 34678899999997 8889899999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCce-EEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVA-RVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~-~v~iSa~~g~~~ 252 (551)
|+|.++..+..+........+.. ..++.+ ++++|+..+.|+
T Consensus 144 K~DKi~~~~~~k~l~~v~~~l~~--~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 144 KADKLKKSERNKQLNKVAEELKK--PPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred ccccCChhHHHHHHHHHHHHhcC--CCCccceEEEEecccccCH
Confidence 99999876554433333323333 222222 788899888876
No 21
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.76 E-value=6.9e-18 Score=170.42 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..++++..++.+|+||+|+|++. +.+.....+.+.+. ++|+++|+||+|+.+..... .+...+... ..+
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~-p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~-~~~~~~~~~-------~~~ 82 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARI-PLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTK-KWIEYFEEQ-------GIK 82 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCC-CCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHH-HHHHHHHHc-------CCe
Confidence 36678888999999999999986 56655555555554 68999999999998654332 222222111 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||.++.++ +.|++.+..+... ...+.. . ......+.+++++|.||||||
T Consensus 83 vi~vSa~~~~gi-------------~~L~~~l~~~l~~--------~~~~~~-~-----~~~~~~~~~~~~~G~pnvGKS 135 (287)
T PRK09563 83 ALAINAKKGQGV-------------KKILKAAKKLLKE--------KNERRK-A-----KGMRPRAIRAMIIGIPNVGKS 135 (287)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHH--------HHhhhh-h-----cccCcCceEEEEECCCCCCHH
Confidence 788999888776 3454444322111 000000 0 001134679999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|++|+|.+.. .+.++..||+|+..+...-+.++.++||||+..|.
T Consensus 136 sliN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 136 TLINRLAGKK--IAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred HHHHHHhcCC--ccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 9999999987 47889999999977766656789999999999876
No 22
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.76 E-value=5.9e-18 Score=170.05 Aligned_cols=167 Identities=19% Similarity=0.142 Sum_probs=115.6
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..+++...++.+|+||+|+|++. +.+..+..+.+.+. ++|+++|+||+|+.+...... +...+... ..+
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~-p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~-~~~~~~~~-------~~~ 79 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARI-PLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQ-WLKYFEEK-------GIK 79 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCC-CCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHH-HHHHHHHc-------CCe
Confidence 46678889999999999999985 56665556666553 689999999999986543322 22222111 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||..+.++ .+|.+.+..+.... .+.... ......+.+++++|.||||||
T Consensus 80 vi~iSa~~~~gi-------------~~L~~~i~~~~~~~----~~~~~~----------~~~~~~~~~~~~vG~~nvGKS 132 (276)
T TIGR03596 80 ALAINAKKGKGV-------------KKIIKAAKKLLKEK----NEKLKA----------KGLKNRPIRAMIVGIPNVGKS 132 (276)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHHh----hhhhhh----------ccCCCCCeEEEEECCCCCCHH
Confidence 789999888776 44544443221100 000000 001124678999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|++|+|.+.. .+.++..||+|+..+...-+..+.++||||+..|.
T Consensus 133 slin~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 133 TLINRLAGKK--VAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred HHHHHHhCCC--ccccCCCCCeecceEEEEeCCCEEEEECCCcccCC
Confidence 9999999987 47889999999866654445678999999998876
No 23
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.76 E-value=1.3e-17 Score=150.65 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=103.2
Q ss_pred HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCc
Q psy11743 162 TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEV 239 (551)
Q Consensus 162 ~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~ 239 (551)
++.++..++++|++++|+|++. +.+..+..+.+++... ++|+++|+||+|+.+++.... +...+...+ .
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~-~~~~~~~~~-------~ 72 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARN-PLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKA-WAEYFKKEG-------I 72 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccC-CcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHH-HHHHHHhcC-------C
Confidence 4567788999999999999986 5566666777777655 899999999999987654332 222222221 3
Q ss_pred eEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCCh
Q psy11743 240 ARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGK 319 (551)
Q Consensus 240 ~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gK 319 (551)
.++++||.++.+ +++++|.+||||
T Consensus 73 ~ii~iSa~~~~~--------------------------------------------------------~~~~~G~~~vGK 96 (141)
T cd01857 73 VVVFFSALKENA--------------------------------------------------------TIGLVGYPNVGK 96 (141)
T ss_pred eEEEEEecCCCc--------------------------------------------------------EEEEECCCCCCH
Confidence 577888853221 588999999999
Q ss_pred hHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecC
Q psy11743 320 TTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 320 ss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
||++|+|++... ..++..+++|++.....-+..+.++||||+..|
T Consensus 97 stlin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 97 SSLINALVGKKK--VSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred HHHHHHHhCCCc--eeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 999999999874 578889999986554333447899999999764
No 24
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.75 E-value=1.2e-17 Score=153.29 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=103.0
Q ss_pred CEEEEEEeCCCCCCChHHHHHH-HHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 173 DRIILLFDAHKLDISDEFRRSI-EALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 173 D~il~VvDa~~~~~~~~~~~~l-~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
|++++|+|++. +.+.....+. ..+...++|+++|+||+|+.+.+++.+.. ..+... ....++++||.++.+
T Consensus 1 Dvvl~VvD~~~-p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~-~~~~~~------~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARD-PLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWL-AYLRHS------YPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccC-CccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHH-HHHHhh------CCceEEEEeccCCcC
Confidence 78999999986 4444444444 46666789999999999998765433221 111111 134678899999888
Q ss_pred CcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 252 LVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 252 ~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
+ ++|.+.+..... ...+..... .......+++++|+|||||||++|+|.+..
T Consensus 73 i-------------~~L~~~i~~~~~----~~~~~~~~~----------~~~~~~~~~~~~G~~~~GKstlin~l~~~~- 124 (155)
T cd01849 73 I-------------EKKESAFTKQTN----SNLKSYAKD----------GKLKKSITVGVIGYPNVGKSSVINALLNKL- 124 (155)
T ss_pred h-------------hhHHHHHHHHhH----HHHHHHHhc----------cccccCcEEEEEccCCCCHHHHHHHHHccc-
Confidence 7 344444421100 000110000 011256899999999999999999999987
Q ss_pred CcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 332 PGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 332 ~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
...++..++||+......-+..+.++||||+
T Consensus 125 -~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 125 -KLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred -cccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 4679999999986554444577899999996
No 25
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=3.4e-17 Score=169.05 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=108.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|+|..+..+...+++|++....+...+ +
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~----------------------~----------- 99 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK----------------------D----------- 99 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC----------------------C-----------
Confidence 4899999999999999999999998766667777766654332211 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.++.+|||||+..... .+ ...+.+....++..+|++++|+|+.. ++...+..++..++..+.|+++|+||+|+...
T Consensus 100 ~qi~~~DTpG~~~~~~-~l--~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 100 TQVILYDTPGIFEPKG-SL--EKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred eEEEEEECCCcCCCcc-cH--HHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 3589999999965321 11 11245555667899999999999986 66776667788887778899999999998753
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+ ....+.. ..+..+++++||++|.|+
T Consensus 176 -~~~~-~~~~l~~-----~~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 176 -YLND-IKAFLTE-----NHPDSLLFPISALSGKNI 204 (339)
T ss_pred -cHHH-HHHHHHh-----cCCCcEEEEEeccCccCH
Confidence 2222 1222211 123356889999999987
No 26
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=7.4e-17 Score=151.72 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=103.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|+|||||+|+|++.. ...+...++.|.+..... . +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~-------------------------------~ 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE-V-------------------------------N 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE-e-------------------------------C
Confidence 467899999999999999999999986 332333333333322110 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+...... .....++...+..++. .+|++++|+|++. +++..+..++..+...++|+++|+|
T Consensus 64 ----~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~~pviiv~n 137 (179)
T TIGR03598 64 ----DGFRLVDLPGYGYAKVS-KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERGIPVLIVLT 137 (179)
T ss_pred ----CcEEEEeCCCCccccCC-hhHHHHHHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 24899999998653211 1111223444444443 4689999999986 7888887778888878899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+...........++.. ....+++++||++|.|+
T Consensus 138 K~D~~~~~~~~~~~~~i~~~l~~~--~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 138 KADKLKKSELNKQLKKIKKALKKD--ADDPSVQLFSSLKKTGI 178 (179)
T ss_pred CcccCCHHHHHHHHHHHHHHHhhc--cCCCceEEEECCCCCCC
Confidence 999987554332222222122221 12237899999999986
No 27
>PRK12289 GTPase RsgA; Reviewed
Probab=99.74 E-value=2.8e-17 Score=169.02 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=107.8
Q ss_pred HHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEE
Q psy11743 165 LEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVY 243 (551)
Q Consensus 165 ~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~ 243 (551)
.+..+.++|.+++|+|+.++.+... ...++..+...++|+++|+||+|+++..+.. .+...+...+ .++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~-~~~~~~~~~g-------~~v~~ 154 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQ-QWQDRLQQWG-------YQPLF 154 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHH-HHHHHHHhcC-------CeEEE
Confidence 3456899999999999986455553 2455555566789999999999998765432 2333332222 25788
Q ss_pred ecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHH
Q psy11743 244 IGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFI 323 (551)
Q Consensus 244 iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~ 323 (551)
+||.++.|+ ++|++.+. ..+++|+|.||||||||+
T Consensus 155 iSA~tg~GI-------------~eL~~~L~--------------------------------~ki~v~iG~SgVGKSSLI 189 (352)
T PRK12289 155 ISVETGIGL-------------EALLEQLR--------------------------------NKITVVAGPSGVGKSSLI 189 (352)
T ss_pred EEcCCCCCH-------------HHHhhhhc--------------------------------cceEEEEeCCCCCHHHHH
Confidence 999998887 44554441 125799999999999999
Q ss_pred HHHHhCCCCcccccCCCc-------ccceEEEEecCCCccccCCceeecCCC
Q psy11743 324 RYLLERDFPGIHIGPEPT-------TDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 324 n~l~~~~~~~~~v~~~~~-------~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|+|++.. ...++..++ ||++.....-.....++||||+..++.
T Consensus 190 N~L~~~~--~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 190 NRLIPDV--ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred HHHcCcc--ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 9999886 467777777 777666554333458999999999886
No 28
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=9.7e-17 Score=171.00 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC--cEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD--KIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~--~vilVlN 209 (551)
+.....+++||||||+..+.... +.+.+...+..+|+||||+|+.. ..+..+..+++.+++.++ |+++|+|
T Consensus 225 ~l~~~~QIIFVDTPGIhk~~~~~------L~k~M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 225 LESYPGQLTLLDTPGPNEAGQPH------LQKMLNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred cccccCCEEEEECCCCCCccchH------HHHHHHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEE
Confidence 33445789999999998643221 34445567999999999999986 677788888888887774 9999999
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH-----QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+. +.+...+...+. .. ..+...++++||++|.++
T Consensus 298 KIDl~dreeddkE~Lle~V~~~L~--q~--~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 298 KFDQQDRNSDDADQVRALISGTLM--KG--CITPQQIFPVSSMWGYLA 341 (741)
T ss_pred cccCCCcccchHHHHHHHHHHHHH--hc--CCCCceEEEEeCCCCCCH
Confidence 9999752 222222111110 11 234667899999999987
No 29
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.73 E-value=1.8e-17 Score=157.52 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=105.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcc-cccCCCCc
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLG-KVLQTPEV 239 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~-~l~~~~~~ 239 (551)
+...+..+++++|++++|+|+++. .......+ .....++|+++|+||+|+.+..............+. ...+....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~-~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDF-PGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccC-CCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 466777888999999999999862 22333333 222346899999999999753221111111100000 00022223
Q ss_pred eEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCCh
Q psy11743 240 ARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGK 319 (551)
Q Consensus 240 ~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gK 319 (551)
+++++||+++.|+ ++|++.+... +. .+.+++++|.|||||
T Consensus 101 ~i~~vSA~~~~gi-------------~eL~~~l~~~------------l~---------------~~~~~~~~G~~nvGK 140 (190)
T cd01855 101 DVILISAKKGWGV-------------EELINAIKKL------------AK---------------KGGDVYVVGATNVGK 140 (190)
T ss_pred cEEEEECCCCCCH-------------HHHHHHHHHH------------hh---------------cCCcEEEEcCCCCCH
Confidence 5789999998887 4555554211 10 246899999999999
Q ss_pred hHHHHHHHhCCC------CcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 320 TTFIRYLLERDF------PGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 320 ss~~n~l~~~~~------~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
||++|+|++... .+..++..||||+......-+..+.++||||+
T Consensus 141 StliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 141 STLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred HHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 999999998753 23688999999986664444447899999996
No 30
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.73 E-value=5.8e-17 Score=150.87 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=100.6
Q ss_pred CEEEEEEeCCCCCCChHHHHHHHH--HhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 173 DRIILLFDAHKLDISDEFRRSIEA--LRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 173 D~il~VvDa~~~~~~~~~~~~l~~--l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
|+|++|+|++. +++..+..+.+. +...++|+++|+||+|+++++.+.. |...+... ...+.+.|+....
T Consensus 1 DvVl~VvDar~-p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~-~~~~~~~~-------~~~~~~~~~~~~~ 71 (172)
T cd04178 1 DVILEVLDARD-PLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEK-WLKYLRRE-------FPTVAFKASTQSQ 71 (172)
T ss_pred CEEEEEEECCC-CCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHH-HHHHHHhh-------CCEEEEEeccccc
Confidence 89999999996 566656666666 5556799999999999998765443 33333221 1223344443221
Q ss_pred C--CcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHh
Q psy11743 251 P--LVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 251 ~--~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
. +...... . +.....+... .......++-+.+++.... .....+.+++++|.|||||||++|.|.+
T Consensus 72 ~~~~~~~~~~-~-~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 72 KKNLGQKSVK-V-EAASADLLRS----SVCFGADCLLKLLKNYSRN------KDIKTSITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred ccchhhcccc-c-chhhhhhhhh----ccccCHHHHHHHHHHHhhc------cccccCcEEEEEcCCCCCHHHHHHHHhC
Confidence 1 1000000 0 0000111111 1111122222223221110 1123467999999999999999999999
Q ss_pred CCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 329 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 329 ~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
.. .+++++.||+|+..+....+.++.++||||+
T Consensus 140 ~~--~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 140 SR--ACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cc--cceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 87 5799999999997665555667899999996
No 31
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1.5e-16 Score=146.32 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=90.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC--CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~--~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|++|||||||+|+|++.+....... +++|.+..... ...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~------------------------------~~~~~~- 50 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAY------------------------------LDLPSG- 50 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEE------------------------------EEecCC-
Confidence 589999999999999999998642212111 11121111000 000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~ 214 (551)
..+.+|||||+.. +...+..++..+|++++|+|+++ +...+..+.+..+...+. |+++|+||+|+.
T Consensus 51 -~~~~~~DtpG~~~-----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 -KRLGFIDVPGHEK-----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred -cEEEEEECCChHH-----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 4589999999743 44555667889999999999985 444444444444444444 899999999998
Q ss_pred CHHHHH---HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... +.+...+... +....+++++||+++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 118 DEDWLELVEEEIRELLAGT----FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred CHHHHHHHHHHHHHHHHhc----CcCCCcEEEEeCCCCcCH
Confidence 653221 1222222111 112457899999999887
No 32
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.72 E-value=1.1e-16 Score=157.64 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=105.4
Q ss_pred HHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 162 TGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 162 ~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
....+.++.++|.+++|+|+.++..+.. ...++..+...+.|+++|+||+|+.+..+....+...+... ..+
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~-------g~~ 99 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI-------GYQ 99 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHC-------CCe
Confidence 4444567899999999999986454443 34555566667899999999999986544332222222221 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||++|.|+ ++|++.+ ....++++|.||||||
T Consensus 100 v~~~SAktg~gi-------------~eLf~~l--------------------------------~~~~~~~~G~sgvGKS 134 (245)
T TIGR00157 100 VLMTSSKNQDGL-------------KELIEAL--------------------------------QNRISVFAGQSGVGKS 134 (245)
T ss_pred EEEEecCCchhH-------------HHHHhhh--------------------------------cCCEEEEECCCCCCHH
Confidence 788999998887 4454443 1237899999999999
Q ss_pred HHHHHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCCCCC
Q psy11743 321 TFIRYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
|++|+|++.. ...++.. .+||++.....- ....++||||+...+...
T Consensus 135 tLiN~L~~~~--~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 135 SLINALDPSV--KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWH 188 (245)
T ss_pred HHHHHHhhhh--hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCC
Confidence 9999999985 2333333 347775553332 356899999999887543
No 33
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.9e-16 Score=165.61 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=104.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.-|+|||.||||||||+|+|++.+. .+...|.+|+.....+..... .
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~---------------------~----------- 206 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDD---------------------E----------- 206 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCC---------------------C-----------
Confidence 4799999999999999999999874 566677778777766543210 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilVl 208 (551)
+.++++||||+..+..... .........++++|++++|+|++.. ........+++.+.. ..+|+++|+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~----~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGA----GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred cEEEEEeCCCccccccchh----hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 3489999999986432211 1233344578999999999998721 233344555565554 358999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....++.+.+......++ ...+++++||+++.++
T Consensus 283 NKiDl~~~~el~~~l~~l~~~~~-----~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 283 NKIDLLDEEEAEERAKAIVEALG-----WEGPVYLISAASGLGV 321 (390)
T ss_pred eCCccCChHHHHHHHHHHHHHhC-----CCCCEEEEECCCCcCH
Confidence 99999876554333332221111 1125788999998887
No 34
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=3.7e-16 Score=144.70 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|+|||||+|+|++.........+..+++....... ++ +
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-----~---------- 49 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE-----------------YD-----G---------- 49 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE-----------------EC-----C----------
Confidence 468999999999999999999998754333333333332211000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... .....+.. ......+..+|++++|+|+.+ +.+.....+...+...+.|+++|+||+|+
T Consensus 50 -~~~~iiDtpG~~~~~~--~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 125 (174)
T cd01895 50 -KKYTLIDTAGIRRKGK--VEEGIEKYSVLRTLKAIERADVVLLVIDATE-GITEQDLRIAGLILEEGKALVIVVNKWDL 125 (174)
T ss_pred -eeEEEEECCCCccccc--hhccHHHHHHHHHHHHHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhcCCCEEEEEecccc
Confidence 3488999999976321 11111111 123345689999999999986 66666667777777678999999999999
Q ss_pred CCH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+. .............++ .....+++++||+.+.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 126 VEKDSKTMKEFKKEIRRKLP---FLDYAPIVFISALTGQGV 163 (174)
T ss_pred CCccHHHHHHHHHHHHhhcc---cccCCceEEEeccCCCCH
Confidence 865 332222222211122 223467899999998887
No 35
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=3.2e-16 Score=143.83 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=103.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|+|.........+.+++.....+.... +
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---------- 50 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD----------------------D---------- 50 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC----------------------C----------
Confidence 57899999999999999999999876443334444433333222111 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+....... ...+.......+..+|++++|+|+.. +.+.....+.+.+...+.|+++|+||+|+..
T Consensus 51 -~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~d~i~~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 51 -AQIIFVDTPGIHKPKKKL---GERMVKAAWSALKDVDLVLFVVDASE-PIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred -eEEEEEECCCCCcchHHH---HHHHHHHHHHHHHhCCEEEEEEECCC-ccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 348899999998643211 11133445567899999999999996 4566666777777777899999999999984
Q ss_pred -HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 -HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 -~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+...+. ...+.. ..+..+++.+|++.+.++
T Consensus 126 ~~~~~~~~-~~~~~~-----~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 126 DKEDLLPL-LEKLKE-----LGPFAEIFPISALKGENV 157 (168)
T ss_pred cHHHHHHH-HHHHHh-----ccCCCceEEEEeccCCCh
Confidence 3333322 222221 222457788999988887
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=1.5e-16 Score=145.12 Aligned_cols=146 Identities=21% Similarity=0.275 Sum_probs=98.6
Q ss_pred EEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCe
Q psy11743 60 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGI 139 (551)
Q Consensus 60 ~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 139 (551)
+++|.+|+|||||+|+|++.........+..|.+....... ..+ ..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~-----------~~~ 47 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE----------------------WGG-----------REF 47 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE----------------------ECC-----------eEE
Confidence 57999999999999999998643333444333333211100 000 348
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
.+|||||+.+... .....+.......+..+|++++|+|+.. +.+.....+...++..+.|+++|+||+|+......
T Consensus 48 ~i~DtpG~~~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 48 ILIDTGGIEPDDE---GISKEIREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred EEEECCCCCCchh---HHHHHHHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 9999999986322 1111234455667889999999999986 56666667778888788999999999999876543
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.++. .+++.+|++++.|+
T Consensus 124 ----~~~~~~~~~------~~~~~~Sa~~~~gv 146 (157)
T cd01894 124 ----AAEFYSLGF------GEPIPISAEHGRGI 146 (157)
T ss_pred ----HHHHHhcCC------CCeEEEecccCCCH
Confidence 223333322 25688999998887
No 37
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=9.4e-17 Score=164.10 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=126.9
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
.+-+-||+.. ++.+++...+..+|+|+.|+|++. +.+.....+.+.+.. ++.++|+||+|+++....
T Consensus 13 ~i~~~~g~~~----------k~~~~~~~~~~~~d~vvevvDar~-P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~~~~ 79 (322)
T COG1161 13 KIQWFPGHMK----------KAKRQLKEVLKSVDVVVEVVDARD-PLGTRNPELERIVKE--KPKLLVLNKADLAPKEVT 79 (322)
T ss_pred cccCCCCchH----------HHHHHHHHhcccCCEEEEEEeccc-cccccCccHHHHHcc--CCcEEEEehhhcCCHHHH
Confidence 4555688764 267788899999999999999997 566666566666653 455999999999997653
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYE 299 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 299 (551)
+.|...+.+. .....+++++.++.+.. .+..++..+.. ..++.....+.
T Consensus 80 -~~W~~~~~~~------~~~~~~~v~~~~~~~~~-------------~i~~~~~~~~~----~~i~~~~~~~~------- 128 (322)
T COG1161 80 -KKWKKYFKKE------EGIKPIFVSAKSRQGGK-------------KIRKALEKLSE----EKIKRLKKKGL------- 128 (322)
T ss_pred -HHHHHHHHhc------CCCccEEEEeecccCcc-------------chHHHHHHHHH----HHHHHHhhcCC-------
Confidence 3344443222 13355788888877761 12221111100 11222221110
Q ss_pred ccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 300 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.....+++++|.|||||||+||+|.++. .+.++..||+|++.++..-+..+.|.||||+..|+..
T Consensus 129 ---~~~~~~v~vvG~PNVGKSslIN~L~~k~--~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 129 ---LKRKIRVGVVGYPNVGKSTLINRLLGKK--VAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred ---CccceEEEEEcCCCCcHHHHHHHHhccc--ceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCcc
Confidence 1134689999999999999999999998 5999999999999888887788999999999998844
No 38
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.70 E-value=2.1e-16 Score=145.17 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=108.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
+.+..+..+.++|++++|+|++. +....+..+...+...++|+++|+||+|+.+...... +.... .....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~-~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~-------~~~~~~ 72 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARD-PELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEK-WKSIK-------ESEGIP 72 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCC-CcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHH-HHHHH-------HhCCCc
Confidence 34556667788999999999986 4444445666666666899999999999986543221 11111 112346
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||+++.|+ ++|.+.+... +. ......+++++|.+|+|||
T Consensus 73 ~~~iSa~~~~gi-------------~~L~~~l~~~------------~~------------~~~~~~~~~~ig~~~~Gks 115 (156)
T cd01859 73 VVYVSAKERLGT-------------KILRRTIKEL------------AK------------IDGKEGKVGVVGYPNVGKS 115 (156)
T ss_pred EEEEEccccccH-------------HHHHHHHHHH------------Hh------------hcCCCcEEEEECCCCCCHH
Confidence 789999988887 4455444211 10 0124568899999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
|++|.|.+.. ...+++.+++|+..+....+..+.++||||+
T Consensus 116 sl~~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 116 SIINALKGRH--SASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHhCCC--ccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 9999999876 4678889999876654444557889999996
No 39
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=4e-16 Score=144.77 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=94.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|.+|||||||+|+|.+.+. .+...+++|++....... ++. ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~-----------------~~~---------------~~ 48 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVR-----------------VDD---------------GR 48 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEE-----------------cCC---------------CC
Confidence 489999999999999999998764 233334444443322111 000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhC-----CCCcEEEEEcCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRG-----HDDKIRIVLNKA 211 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~-----~~~~vilVlNK~ 211 (551)
.+.++||||+.+.... ..++.......+..+|++++|+|+++. ........+.+.+.. .++|+++|+||+
T Consensus 49 ~~~l~DtpG~~~~~~~----~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 124 (170)
T cd01898 49 SFVVADIPGLIEGASE----GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKI 124 (170)
T ss_pred eEEEEecCcccCcccc----cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEch
Confidence 5899999998642211 112333444556789999999999863 122333445554442 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ++.. ....+++.+||+.+.++
T Consensus 125 Dl~~~~~~~~~~~~-~~~~-----~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 125 DLLDEEELFELLKE-LLKE-----LWGKPVFPISALTGEGL 159 (170)
T ss_pred hcCCchhhHHHHHH-HHhh-----CCCCCEEEEecCCCCCH
Confidence 99875544332222 2111 12346788999998887
No 40
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=4.9e-16 Score=147.33 Aligned_cols=169 Identities=22% Similarity=0.258 Sum_probs=104.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~ 134 (551)
...|+++|+.++|||||+++|++........+...+.... ..........+...+ ....... ..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~ti~------------~~~~~~~~~~ 67 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAF---LDKHPEERERGITID------------LSFISFEKNE 67 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCH---HHSSHHHHHCTSSSS------------SEEEEEEBTE
T ss_pred EEEEEEECCCCCCcEeechhhhhhcccccccccccccccc---ccccchhhhcccccc------------cccccccccc
Confidence 3679999999999999999999876321110000000000 000000000000000 0000000 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
-...+++|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|+++|+||+|+.
T Consensus 68 ~~~~i~~iDtPG~~~-----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHED-----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp SSEEEEEEEESSSHH-----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred cccceeecccccccc-----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeeeeccch
Confidence 115699999999854 67778888999999999999996 889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcc-ccc-CC-CCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLG-KVL-QT-PEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~-~l~-~~-~~~~~v~iSa~~g~~~ 252 (551)
. .+..+........+- ... .. ...|++++||++|.|+
T Consensus 136 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 136 E-KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTH
T ss_pred h-hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCH
Confidence 3 333332222221221 111 11 3579999999999987
No 41
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.69 E-value=3.8e-16 Score=161.54 Aligned_cols=150 Identities=22% Similarity=0.235 Sum_probs=96.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++.+. .+...+++|.|..+.... +++.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~------------------------------~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLD------------------------------LPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEE------------------------------eCCC
Confidence 458999999999999999999999873 345556666655432111 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH---HHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR---RSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~---~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.++||||+........-. .|. .+...+..||++++|+|++++....... .++..+...++|+++|+||+
T Consensus 237 --~~i~l~DT~G~~~~l~~~lie--~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~ 311 (351)
T TIGR03156 237 --GEVLLTDTVGFIRDLPHELVA--AFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI 311 (351)
T ss_pred --ceEEEEecCcccccCCHHHHH--HHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence 358999999985421111111 132 3445688999999999998633222222 23333333478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... .. . . ..+++++||++|.|+
T Consensus 312 Dl~~~~~v~~----~~---~---~--~~~~i~iSAktg~GI 340 (351)
T TIGR03156 312 DLLDEPRIER----LE---E---G--YPEAVFVSAKTGEGL 340 (351)
T ss_pred cCCChHhHHH----HH---h---C--CCCEEEEEccCCCCH
Confidence 9986543211 10 1 1 135789999999987
No 42
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.68 E-value=1.2e-15 Score=143.71 Aligned_cols=165 Identities=21% Similarity=0.165 Sum_probs=99.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||+|+|++......... ..++.... ........+.... ..+.++... ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~---~~ 62 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDG--TVEETFLD---VLKEERERGITIK----------SGVATFEWP---DR 62 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCC--ceeccccc---CCHHHHHcCCCee----------cceEEEeeC---CE
Confidence 489999999999999999999875321111 01110000 0000000000000 000001000 14
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.+|||||+.+ +......++..+|++++|+|+.. +......+++..+...+.|+++|+||+|+..++
T Consensus 63 ~~~liDtpG~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 63 RVNFIDTPGHED-----------FSSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAINKIDRVGEE 130 (189)
T ss_pred EEEEEeCCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEEECCCCcchh
Confidence 589999999864 45566777889999999999986 666777777777777889999999999998743
Q ss_pred HHHHHHHHHHHHccccc----------CCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVL----------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~----------~~~~~~~v~iSa~~g~~~ 252 (551)
+...........+.... .....+++++||+.|.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi 175 (189)
T cd00881 131 DLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGV 175 (189)
T ss_pred cHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCH
Confidence 33222211111121110 123567899999999887
No 43
>KOG2484|consensus
Probab=99.68 E-value=2.5e-16 Score=157.77 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=119.2
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC-CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH-DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPE 238 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~-~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~ 238 (551)
|.+.++..++.+|+||.|+||++ +++....++-+++. .+ ++..|+|+||+|+++.+.+.+ |..++.+ .+
T Consensus 136 Y~ke~rkvve~sDVVleVlDARD-PlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~-Wl~YLr~-------~~ 206 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARD-PLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEK-WLVYLRR-------EG 206 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccC-CCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHH-HHHHHHh-------hC
Confidence 66778888999999999999997 66665556666653 33 489999999999999876544 4444422 22
Q ss_pred ceEEEecccCCCCCc--ccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 239 VARVYIGSFWDQPLV--HDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 239 ~~~v~iSa~~g~~~~--~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
+.++|..+..+.+.. +.....-+ +.+.|++.+.++.+ ...-..-++++++|.||
T Consensus 207 ptv~fkast~~~~~~~~~~~~s~c~--gae~l~~~lgny~~----------------------~~~lk~sIrvGViG~PN 262 (435)
T KOG2484|consen 207 PTVAFKASTQMQNSNSKNLQSSVCF--GAETLMKVLGNYCR----------------------KGELKTSIRVGIIGYPN 262 (435)
T ss_pred Ccceeecccccccccccccccchhh--hHHHHHHHhcCccc----------------------ccccCcceEeeeecCCC
Confidence 344555554333320 00000001 11223333222211 11123568999999999
Q ss_pred CChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||||+||+|..+. .|+++..||.|++.+..+.+..+.|+|.||+..+.
T Consensus 263 VGKSSvINsL~~~k--~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 263 VGKSSVINSLKRRK--ACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPS 311 (435)
T ss_pred CChhHHHHHHHHhc--cccCCCCccchhhhhheeccCCceeccCCceeecC
Confidence 99999999999998 59999999999999999999999999999999876
No 44
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=1.4e-15 Score=140.72 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|.|+|+|.+|+|||||+|+|++..+... ..+.+|.+......... . .. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~---------------~-------------~~--~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAE---------------V-------------LK--I 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecc---------------c-------------CC--c
Confidence 6799999999999999999998775321 11222221110000000 0 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||... +.......+..+|++++|+|+++ +...+....+..+...++|+++|+||+|+...
T Consensus 50 ~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 50 PGITFIDTPGHEA-----------FTNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred ceEEEEeCCCcHH-----------HHHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 4589999999753 34445556789999999999986 44555556667777788999999999998743
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .......... ....-......+++.+||..|.|+
T Consensus 118 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 118 NPERVKNELSELG-LQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred cHHHHHHHHHHhh-ccccccccCcCcEEEeecccCCCH
Confidence 2 1211111111 010000112357899999999887
No 45
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=2.7e-16 Score=136.91 Aligned_cols=116 Identities=29% Similarity=0.395 Sum_probs=83.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+|+|.+|+|||||+|+|++.+...+...++.|+........ +++ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~----------------------~~~-----------~ 47 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE----------------------YNN-----------K 47 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE----------------------ETT-----------E
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee----------------------ece-----------e
Confidence 5899999999999999999997765566666666555321100 011 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
.+.++||||+.++....... +........+..+|++++|+|+.. .....+.++++.++ .++|+++|+||
T Consensus 48 ~~~~vDtpG~~~~~~~~~~~--~~~~~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 48 KFILVDTPGINDGESQDNDG--KEIRKFLEQISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEESSSCSSSSHHHHHH--HHHHHHHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eEEEEeCCCCcccchhhHHH--HHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 57899999998754322111 123334455599999999999886 55666778888887 88999999998
No 46
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=7.8e-16 Score=146.48 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=77.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
.++.++||||+.+ |...+...+..+|++++|+|+.. +...+..+++..+...++| +++|+||+|+..
T Consensus 65 ~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 65 RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred eEEEEEECcCHHH-----------HHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 4689999999853 67777888899999999999996 7888888889888888887 778999999975
Q ss_pred HHHHHHH----HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRV----YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~----~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+. +...+..++. ....++++++||++|.+.
T Consensus 133 ~~~~~~~~~~~i~~~l~~~g~--~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 133 DEELLELVEMEVRELLSKYGF--DGDNTPIVRGSALKALEG 171 (195)
T ss_pred cHHHHHHHHHHHHHHHHHhcc--cccCCeEEEeeCccccCC
Confidence 4433222 2222222333 223578999999999876
No 47
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.67 E-value=5.9e-17 Score=162.48 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
+|+++|+||||||||+|+|.++++ +.+++.|+||+... ...++.++.|+||||+..+. . .+...+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~---~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---H---SLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---c---hHHHHHHHHH
Confidence 689999999999999999999983 67999999997432 33466778999999998753 1 2222233344
Q ss_pred hhhccccCccc-------c--------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 385 QCSLVNSPVLK-------G--------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 385 ~~~~~~~~~~~-------~--------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
..++..+|++. + ...+....+.++|+||+|+..+
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~------------------------------- 122 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK------------------------------- 122 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH-------------------------------
Confidence 55556665421 1 1112234666888888887210
Q ss_pred hhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCC
Q psy11743 450 SVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQ 529 (551)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 529 (551)
..+.+.+.... ....+.+..+++++.+.+.+.|.+.+.+..++.+ .+++.+.+ +|.|+++
T Consensus 123 ---------~~~~~~~~~~~-~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~----~~~~~~~~------t~~~~~~ 182 (270)
T TIGR00436 123 ---------DKLLPLIDKYA-ILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP----FRYPEDYV------TDQPDRF 182 (270)
T ss_pred ---------HHHHHHHHHHH-hhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC----CCCCCccc------CCCCHHH
Confidence 00000000000 0001113345566666665555554444444444 67788888 9999999
Q ss_pred ccchHHHHHHHHHhHhhhhhc
Q psy11743 530 TLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.++|.+||++...+.+|+|.-
T Consensus 183 ~~~e~ire~~~~~~~~e~p~~ 203 (270)
T TIGR00436 183 KISEIIREKIIRYTKEEIPHS 203 (270)
T ss_pred HHHHHHHHHHHHhcccccCce
Confidence 999999999999999999963
No 48
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.3e-15 Score=156.31 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=100.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-...|+|||.||||||||+|+|++.+. .+...|.+|.+....+..-. ..
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~---------------------~~--------- 205 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVD---------------------DY--------- 205 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeC---------------------CC---------
Confidence 346799999999999999999998763 34455556655554432210 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
..++++||||+.++.... ..+.......++++|++++|+|+++....+....+...+.. .++|+++|+|
T Consensus 206 --~~~~i~D~PGli~ga~~~----~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N 279 (335)
T PRK12299 206 --KSFVIADIPGLIEGASEG----AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLN 279 (335)
T ss_pred --cEEEEEeCCCccCCCCcc----ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence 358999999997643221 12344455667899999999999853323333455555543 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...........+ . . ....+++++||+++.++
T Consensus 280 KiDL~~~~~~~~~~~~~~-~-~----~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 280 KIDLLDEEEEREKRAALE-L-A----ALGGPVFLISAVTGEGL 316 (335)
T ss_pred CcccCCchhHHHHHHHHH-H-H----hcCCCEEEEEcCCCCCH
Confidence 999986543322111111 1 1 11246789999999988
No 49
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=2e-15 Score=139.91 Aligned_cols=151 Identities=19% Similarity=0.295 Sum_probs=91.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+++|.+|+|||||+|+|++.... ....+.+|.+....... + ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~----------- 46 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFD-----------------Y-----KY----------- 46 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEc-----------------c-----Cc-----------
Confidence 68999999999999999999998752 12222333332211000 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCC-C-hHHHHHHHHHhCC--CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDI-S-DEFRRSIEALRGH--DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~-~-~~~~~~l~~l~~~--~~~vilVlNK~ 211 (551)
..+.+|||||+.+.... .+. .+. .........+|++++|+|++.... + .....++..+... +.|+++|+||+
T Consensus 47 ~~~~i~Dt~G~~~~~~~--~~~-~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 47 LRWQVIDTPGLLDRPLE--ERN-TIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred eEEEEEECCCcCCcccc--CCc-hHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 35899999998642111 110 111 112222244799999999985221 1 2234566666554 78999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+........ . ..+. .....+++.+||++|.|+
T Consensus 124 Dl~~~~~~~~-~-~~~~------~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 124 DLLTFEDLSE-I-EEEE------ELEGEEVLKISTLTEEGV 156 (168)
T ss_pred ccCchhhHHH-H-HHhh------hhccCceEEEEecccCCH
Confidence 9987554332 1 1111 123346789999999998
No 50
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.66 E-value=4.6e-15 Score=141.34 Aligned_cols=104 Identities=26% Similarity=0.281 Sum_probs=73.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.+ +.......++..+...+.|+++|+||+|+...
T Consensus 65 ~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 65 TKINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPDA 132 (194)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 4589999999864 66677788999999999999986 55555556666666678999999999999643
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. ...+.....+..++........+++++||++|.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred CHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccc
Confidence 2 22222333332333211222457899999999887
No 51
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.66 E-value=1.5e-15 Score=141.68 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=108.1
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
...+++..+++||++++|+|++. +....+..++..+. ++|+++|+||+|+.+.+.... +...+ +. ....
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~-~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~~~-~~~~~-~~------~~~~ 77 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARI-PLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKK-WLKYF-ES------KGEK 77 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccC-ccCcCChhhHhHhc--CCCEEEEEehhhcCChHHHHH-HHHHH-Hh------cCCe
Confidence 46677888999999999999985 44444444555443 578999999999986543322 21111 11 1235
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||+++.++ ++|.+.+...-.. .+ +.... ......++++++|.+|||||
T Consensus 78 vi~iSa~~~~gi-------------~~L~~~l~~~l~~-----~~----~~~~~------~~~~~~~~~~~~G~~~vGKs 129 (171)
T cd01856 78 VLFVNAKSGKGV-------------KKLLKAAKKLLKD-----IE----KLKAK------GLLPRGIRAMVVGIPNVGKS 129 (171)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHH-----Hh----hhhhc------ccCCCCeEEEEECCCCCCHH
Confidence 788999988877 4455444321100 00 00000 01124568999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
|++|+|.+..+ +.++..+++|+......-+..+.++||||+.
T Consensus 130 tlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 130 TLINRLRGKKV--AKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred HHHHHHhCCCc--eeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 99999999874 5788999999755533333678899999974
No 52
>KOG1423|consensus
Probab=99.66 E-value=8.8e-16 Score=148.79 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=97.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.....|+++|.||||||||.|.++|.++..++..+.+||.+..++.+..+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e------------------------------ 119 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE------------------------------ 119 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc------------------------------
Confidence 34579999999999999999999999999999999999999888776542
Q ss_pred CCccCeEEEeCCCCCCCcccccc-cccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVD-RGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~-~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~vilVlNK~ 211 (551)
.++.|.||||+......+.. ....+.+..+.++.+||++++|+|+++ .-......++..++. ...|.++|+||+
T Consensus 120 ---TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys~ips~lvmnki 195 (379)
T KOG1423|consen 120 ---TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA-TRTPLHPRVLHMLEEYSKIPSILVMNKI 195 (379)
T ss_pred ---eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC-CcCccChHHHHHHHHHhcCCceeeccch
Confidence 45999999999875432211 011123356778999999999999984 223333344555443 368999999999
Q ss_pred CCCCHH
Q psy11743 212 DMVDHQ 217 (551)
Q Consensus 212 Dl~~~~ 217 (551)
|.+...
T Consensus 196 d~~k~k 201 (379)
T KOG1423|consen 196 DKLKQK 201 (379)
T ss_pred hcchhh
Confidence 998654
No 53
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.65 E-value=1.7e-15 Score=144.03 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.. +.......+..+|++++|+|+.. +......+.+......+.|+++|+||+|+...
T Consensus 68 ~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 68 LQITLVDCPGHAS-----------LIRTIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 4689999999842 44555566788999999999986 55555544444444457899999999999854
Q ss_pred HHHHHHHHHHHHHccc-c--cCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGK-V--LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~-l--~~~~~~~~v~iSa~~g~~~ 252 (551)
.............++. + .+....+++++||++|.|+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCH
Confidence 4322211111111110 0 0123457899999999988
No 54
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=2.8e-15 Score=153.71 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=98.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-...|+|||.+|||||||+|+|++... .+...|.+|+.....+.. ++.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~-----------------~~~-------------- 203 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVR-----------------VDD-------------- 203 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEE-----------------eCC--------------
Confidence 346899999999999999999998763 234445555544433221 100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC---CChHHHHHHHHHhC-----CCCcEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFRRSIEALRG-----HDDKIRI 206 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~---~~~~~~~~l~~l~~-----~~~~vil 206 (551)
...+.++||||+....... ..+.......++++|++++|+|++... .......+.+.+.. ..+|+++
T Consensus 204 -~~~~~i~D~PGli~~a~~~----~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~II 278 (329)
T TIGR02729 204 -GRSFVIADIPGLIEGASEG----AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIV 278 (329)
T ss_pred -ceEEEEEeCCCcccCCccc----ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEE
Confidence 0358999999997643221 123344455678999999999998531 22233344444432 3689999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+.....+........+ ..+++++||+++.++
T Consensus 279 V~NK~DL~~~~~~~~~~~~l~~~~-------~~~vi~iSAktg~GI 317 (329)
T TIGR02729 279 VLNKIDLLDEEELAELLKELKKAL-------GKPVFPISALTGEGL 317 (329)
T ss_pred EEeCccCCChHHHHHHHHHHHHHc-------CCcEEEEEccCCcCH
Confidence 999999987654333222221111 136789999999887
No 55
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=1.9e-15 Score=145.68 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=95.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC--------CCCccc--eEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--------PEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~--------~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
+|+|+|++|+|||||+|+|++..-.+.... +..+.+ ....++.......-.|...+.. .....+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~--~~~~~~~~-- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVA--YRYFSTPK-- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecc--eeEEecCC--
Confidence 489999999999999999998764322100 011111 1111111111000011111100 00000111
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEE
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRI 206 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vil 206 (551)
.++.++||||+.+ +...+...+..+|++++|+|+.. +...+.......+...+. ++++
T Consensus 77 ---------~~~~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~~~~~~~~~iIv 135 (208)
T cd04166 77 ---------RKFIIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYILSLLGIRHVVV 135 (208)
T ss_pred ---------ceEEEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCCcEEE
Confidence 5689999999753 44556667899999999999986 666666555565655554 4777
Q ss_pred EEcCCCCCCH-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 207 VLNKADMVDH-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 207 VlNK~Dl~~~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
|+||+|+... .+........+..+....+.+..+++++||++|.|+.
T Consensus 136 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 136 AVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred EEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 9999999742 1111111111111111113334578999999999884
No 56
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.9e-15 Score=147.50 Aligned_cols=165 Identities=25% Similarity=0.339 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccC-CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 14 EMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFD-AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 14 ~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~-~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
++|.++.+-++++-.+ +.+|++.-.+-. .-+.++ ..|+|+|+|.||||||||+++|++.+ ..+.+.|.|
T Consensus 132 ~a~GR~aSiik~i~~~-L~fL~~~r~~l~------~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFT 201 (346)
T COG1084 132 QAFGRVASIIKKIDDD-LEFLRKARDHLK------KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFT 201 (346)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHHHh------cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCcc
Confidence 3445555555555333 445555522110 112334 56999999999999999999999988 367778877
Q ss_pred ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH-hc
Q psy11743 93 DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA-ER 171 (551)
Q Consensus 93 ~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (551)
++.+.|-|-+ +|. ..+.+|||||+.+.. ++...++..+.-.++ .-
T Consensus 202 TK~i~vGhfe---------------~~~----------------~R~QvIDTPGlLDRP---l~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 202 TKGIHVGHFE---------------RGY----------------LRIQVIDTPGLLDRP---LEERNEIERQAILALRHL 247 (346)
T ss_pred ccceeEeeee---------------cCC----------------ceEEEecCCcccCCC---hHHhcHHHHHHHHHHHHh
Confidence 7766654432 111 459999999999743 333333444444444 67
Q ss_pred cCEEEEEEeCCC-CCCChHH-HHHHHHHhC-CCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 172 VDRIILLFDAHK-LDISDEF-RRSIEALRG-HDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 172 aD~il~VvDa~~-~~~~~~~-~~~l~~l~~-~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
.++|+|++|++. .+.+-+. ..+++.++. ...|+++|+||+|..+.+.+.+.
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~ 301 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEI 301 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHH
Confidence 899999999984 2344333 456666664 34689999999999977665443
No 57
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.64 E-value=8e-16 Score=142.85 Aligned_cols=143 Identities=27% Similarity=0.413 Sum_probs=97.3
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCC-------------CCcccccccc------
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF-------------SPLDKFGKFG------ 119 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g-------------~~~~~~~~~g------ 119 (551)
|+|+|..++|||||||+|+|.++ .+.+..|+|..++.+.++........ ..+..+....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i--lp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI--LPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS---SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhccc--CcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999986 56788899999999998865432211 1111111000
Q ss_pred -----cccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HH
Q psy11743 120 -----NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RS 193 (551)
Q Consensus 120 -----~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~ 193 (551)
..............+....+.||||||+.+.... ..+.+..++..+|++|+|+++.+ ..+..+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~-------~~~~~~~~~~~~d~vi~V~~~~~-~~~~~~~~~l 150 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE-------HTEITEEYLPKADVVIFVVDANQ-DLTESDMEFL 150 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT-------TSHHHHHHHSTTEEEEEEEETTS-TGGGHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhh-------hHHHHHHhhccCCEEEEEeccCc-ccchHHHHHH
Confidence 0111123445555666688999999999874322 23678888899999999999997 5555544 44
Q ss_pred HHHHhCCCCcEEEEEcCC
Q psy11743 194 IEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 194 l~~l~~~~~~vilVlNK~ 211 (551)
.+.+......+++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 455556667799999985
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.64 E-value=3.6e-15 Score=136.77 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=88.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+. ....||... +.... .++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~~~------------------------------~~~~~- 47 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQV------------------------------VIDGE- 47 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---CCcCCcchheEEEEE------------------------------EECCE-
Confidence 57999999999999999999988752 122233221 11100 00000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|..+.........+...+. ..+.|+++|+||+
T Consensus 48 ~~~~~i~Dt~G~~~-----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 48 TCLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEEEECCCCcc-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 02377899999754 45566678889999999999885211111222333332 3478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+................. ..+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 150 (162)
T cd04138 117 DLAARTVSSRQGQDLAKSY-------GIPYIETSAKTRQGV 150 (162)
T ss_pred ccccceecHHHHHHHHHHh-------CCeEEEecCCCCCCH
Confidence 9975321111111111111 236788999999988
No 59
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.9e-15 Score=157.70 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=98.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|||.||||||||+|+|++.+. .+...|.+|.+....+.... .
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~-----------------~-------------- 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAG-----------------D-------------- 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEEC-----------------C--------------
Confidence 446899999999999999999999764 34556666766654433211 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC----CChHHHHHHHHHh------------
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD----ISDEFRRSIEALR------------ 198 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~----~~~~~~~~l~~l~------------ 198 (551)
..++++||||+..+.... ..+.......++++|++++|+|++... .......+...|.
T Consensus 206 --~~f~laDtPGliegas~g----~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~ 279 (500)
T PRK12296 206 --TRFTVADVPGLIPGASEG----KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGL 279 (500)
T ss_pred --eEEEEEECCCCccccchh----hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchh
Confidence 348999999997643221 112233455678999999999997421 1111222222221
Q ss_pred --CCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 199 --GHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 199 --~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-..+|.++|+||+|+.+..++.+.....+... ..+++++||+++.|+
T Consensus 280 ~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-------g~~Vf~ISA~tgeGL 328 (500)
T PRK12296 280 GDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-------GWPVFEVSAASREGL 328 (500)
T ss_pred hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 23689999999999976554433332222111 236899999999988
No 60
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=3.4e-15 Score=159.69 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=98.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...+++|++.......- .+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----------------------~g--------- 262 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----------------------DG--------- 262 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----------------------CC---------
Confidence 45899999999999999999999988766666777776654321110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.++||||+.+.. ..++. . -...+...+..+|++++|+|+++ +.+.+...++.. ..++|+++|+||+|+.
T Consensus 263 --~~i~l~DT~G~~~~~-~~ie~-~-gi~~~~~~~~~aD~il~VvD~s~-~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 263 --IPLRLIDTAGIRETD-DEVEK-I-GIERSREAIEEADLVLLVLDASE-PLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred --eEEEEEeCCCCCCCc-cHHHH-H-HHHHHHHHHHhCCEEEEEecCCC-CCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 348999999997522 11110 0 01234557899999999999986 445444444333 4578999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..... .....+++.+||++|.|+
T Consensus 335 ~~~~~~--------------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 335 GEIDLE--------------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred ccchhh--------------hccCCceEEEEeeCCCCH
Confidence 643221 112236788999999887
No 61
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.64 E-value=3.8e-15 Score=135.76 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=94.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|++.........++.|.+....... +.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~----------- 48 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID----------------------IGG----------- 48 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE----------------------eCC-----------
Confidence 47999999999999999999998753333333333322211000 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.++||||+.+.... .. ..........+.++|++++|+|+.+ ..+..+...... ..++|+++|+||+|+.+.
T Consensus 49 ~~~~i~DtpG~~~~~~~-~~--~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 49 IPVRLIDTAGIRETEDE-IE--KIGIERAREAIEEADLVLFVIDASR-GLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred EEEEEEECCCcCCCcch-HH--HHHHHHHHHHHhhCCEEEEEEECCC-CCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 35899999998763221 11 1112344566789999999999996 555555444443 457999999999999875
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
... .......+++.+||.++.++
T Consensus 123 ~~~-------------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 123 SEL-------------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred ccc-------------ccccCCCceEEEECCCCCCH
Confidence 432 01223457889999988877
No 62
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=9e-15 Score=139.18 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=97.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+.|+++|.+|+|||||+|+|++.+ .......++.|... .... .+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~------------------~~------------- 69 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NFFE------------------VN------------- 69 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EEEe------------------cC-------------
Confidence 367899999999999999999999975 33222233222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+..... .......+...+..++. .++++++|+|+.. +.+....++..++...+.|+++|+|
T Consensus 70 ----~~l~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 ----DKLRLVDLPGYGYAKV-SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEYGIPVLIVLT 143 (196)
T ss_pred ----CeEEEeCCCCCCCcCC-CchHHHHHHHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 3589999999764211 01111123334444443 4578899999885 5666666667777777899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+..+........+.. ...+++++||+++.++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~----~~~~~~~~Sa~~~~gi 182 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKF----GDDEVILFSSLKKQGI 182 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHh----cCCceEEEEcCCCCCH
Confidence 99998765443322111111111 1346788999998887
No 63
>PRK04213 GTP-binding protein; Provisional
Probab=99.63 E-value=9.2e-15 Score=139.92 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. +...|+.|.+.... . +
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~-~------------------~---------------- 51 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY-D------------------W---------------- 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE-e------------------e----------------
Confidence 4579999999999999999999997742 33333333222110 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHH----HHhccCEEEEEEeCCCCC----------CChHHHHHHHHHhCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW----FAERVDRIILLFDAHKLD----------ISDEFRRSIEALRGH 200 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~----~~~~aD~il~VvDa~~~~----------~~~~~~~~l~~l~~~ 200 (551)
..+.+|||||+.....-.-.....+...+.. .+..+|++++|+|+.... ....+.++...+...
T Consensus 52 --~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 52 --GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred --cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 2389999999743111000001113333222 345678999999986411 112334556666667
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccc--cCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKV--LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l--~~~~~~~~v~iSa~~g~~~ 252 (551)
+.|+++|+||+|+....+ +........++.. ......+++.+||++| |+
T Consensus 130 ~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRD--EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred CCCeEEEEECccccCcHH--HHHHHHHHHhcCCccccccCCcEEEEecccC-CH
Confidence 899999999999975431 1111222223320 0001135789999999 88
No 64
>PRK12288 GTPase RsgA; Reviewed
Probab=99.63 E-value=3.2e-15 Score=153.86 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=99.9
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEEe
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
.+.++|.+++|++... .++... ..++..+...++|+++|+||+|+.+..+. ...+...+..+ ..+++++
T Consensus 117 iaANvD~vlIV~s~~p-~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-------g~~v~~v 188 (347)
T PRK12288 117 IAANIDQIVIVSAVLP-ELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-------GYRVLMV 188 (347)
T ss_pred EEEEccEEEEEEeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-------CCeEEEE
Confidence 4589999999999763 554433 45555566678999999999999875431 11111222112 2478899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
||.++.|+ ++|++.+. ..+++|+|.||||||||+|
T Consensus 189 SA~tg~Gi-------------deL~~~L~--------------------------------~ki~~~vG~sgVGKSTLiN 223 (347)
T PRK12288 189 SSHTGEGL-------------EELEAALT--------------------------------GRISIFVGQSGVGKSSLIN 223 (347)
T ss_pred eCCCCcCH-------------HHHHHHHh--------------------------------hCCEEEECCCCCCHHHHHH
Confidence 99988887 44544431 1247899999999999999
Q ss_pred HHHhCCCCcccccCCCc-------ccceEEEEecCCCccccCCceeecCCCC
Q psy11743 325 YLLERDFPGIHIGPEPT-------TDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 325 ~l~~~~~~~~~v~~~~~-------~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+|++.. ...++..++ ||++..+..-+....++||||+..-+..
T Consensus 224 ~Ll~~~--~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~ 273 (347)
T PRK12288 224 ALLPEA--EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLW 273 (347)
T ss_pred Hhcccc--ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCC
Confidence 999986 356666654 5555554333344569999999987754
No 65
>PRK00098 GTPase RsgA; Reviewed
Probab=99.63 E-value=4.1e-15 Score=150.95 Aligned_cols=148 Identities=24% Similarity=0.238 Sum_probs=100.0
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|++++|+|+.++.+.... ..++..+...++|+++|+||+|+.+..+....+...+..++ .+++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g-------~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIG-------YDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC-------CeEEEEeC
Confidence 46899999999999764444332 45666667778999999999999743322222222222222 36789999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
+++.|+ ++|++.+ ...+++++|++||||||++|+|
T Consensus 150 ~~g~gi-------------~~L~~~l--------------------------------~gk~~~~~G~sgvGKStlin~l 184 (298)
T PRK00098 150 KEGEGL-------------DELKPLL--------------------------------AGKVTVLAGQSGVGKSTLLNAL 184 (298)
T ss_pred CCCccH-------------HHHHhhc--------------------------------cCceEEEECCCCCCHHHHHHHH
Confidence 988877 4444433 1347899999999999999999
Q ss_pred HhCCCCcccccCCC-------cccceEEEEecCCCccccCCceeecCCCC
Q psy11743 327 LERDFPGIHIGPEP-------TTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 327 ~~~~~~~~~v~~~~-------~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
++... ..++..+ .||+......-+....++||||+...+..
T Consensus 185 ~~~~~--~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~ 232 (298)
T PRK00098 185 APDLE--LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLH 232 (298)
T ss_pred hCCcC--CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCC
Confidence 98852 3333333 36665554333445689999999975544
No 66
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.63 E-value=3.9e-16 Score=141.73 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=96.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
++|+++|+|||||||++|+|.|.. ..++.+||+|. ...+.+++.++.++|+||+++.. +.+.-++....++..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~---~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~-~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK---QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS-SKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS---EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSS-SSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC-CCCcHHHHHHHHHhh
Confidence 479999999999999999999999 78999999995 33466789999999999999875 456667777666652
Q ss_pred hhhhccccCc--------------ccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPV--------------LKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+.|+ .....+.+..+|.|+|+||||+ ..+..+....+.+.+.|. +|
T Consensus 77 -----~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~------------a~~~g~~id~~~Ls~~Lg--~p 137 (156)
T PF02421_consen 77 -----EKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDE------------AERKGIEIDAEKLSERLG--VP 137 (156)
T ss_dssp -----TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHH------------HHHTTEEE-HHHHHHHHT--S-
T ss_pred -----cCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHH------------HHHcCCEECHHHHHHHhC--CC
Confidence 22332 2345556678999999999999 333334344566666663 67
Q ss_pred hhhh--ccchH-HHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKL 465 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~ 465 (551)
++.+ +++++ ++|.++|
T Consensus 138 vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHhhC
Confidence 7777 78888 8888765
No 67
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=3.7e-15 Score=137.12 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
++|+++|.+|||||||+|++++..+. ....||+. .... +..+. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~-------------- 47 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQIEVDG-----------------Q-------------- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCchhhhEEEEEEECC-----------------E--------------
Confidence 58999999999999999999987752 12223322 1111 11100 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+.+ .+.|+++|+||
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 48 -QCMLEILDTAGTEQ-----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred -EEEEEEEECCCccc-----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 02478999999754 444556678899999999999852222223344444432 36899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...........+. ... ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~-~~~-----~~~~~~~Sa~~~~~v 151 (163)
T cd04136 116 CDLEDERVVSREEGQALA-RQW-----GCPFYETSAKSKINV 151 (163)
T ss_pred ccccccceecHHHHHHHH-HHc-----CCeEEEecCCCCCCH
Confidence 998753322111111111 111 146789999999887
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=7.4e-15 Score=135.29 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=88.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|++++..+. ...+.++++....... +.+ . .
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~------~~~----------~---------------~ 49 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCE------IDG----------Q---------------W 49 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEE------ECC----------E---------------E
Confidence 58999999999999999999987642 2222222222211000 000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 50 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 50 AILDILDTAGQEE-----------FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 2478999999764 45566677899999999999985221112233333332 34689999999999
Q ss_pred CCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+........ ......... ..+.+.+||++|.|+
T Consensus 119 l~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 152 (164)
T cd04145 119 LEHQRKVSREEGQELARKL-------KIPYIETSAKDRLNV 152 (164)
T ss_pred ccccceecHHHHHHHHHHc-------CCcEEEeeCCCCCCH
Confidence 975432211 111112111 125788999999988
No 69
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=8.6e-15 Score=140.54 Aligned_cols=151 Identities=22% Similarity=0.250 Sum_probs=91.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++.... ....+.+|.+....... + ++.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-------------~~~ 88 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLR-----------------L-------------PDG 88 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEE-----------------e-------------cCC
Confidence 4589999999999999999999998642 22223333322211100 0 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+....... ..+. .....+..+|++++|+|++..........+.+.+ ...++|+++|+||+
T Consensus 89 --~~~~i~Dt~G~~~~~~~~~~--~~~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~ 163 (204)
T cd01878 89 --REVLLTDTVGFIRDLPHQLV--EAFR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKI 163 (204)
T ss_pred --ceEEEeCCCccccCCCHHHH--HHHH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcc
Confidence 25899999998653211110 0122 2234467899999999998633222222333333 33468999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..... ... .....+++++||+++.|+
T Consensus 164 Dl~~~~~~~----~~~-------~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 164 DLLDDEELE----ERL-------EAGRPDAVFISAKTGEGL 193 (204)
T ss_pred ccCChHHHH----HHh-------hcCCCceEEEEcCCCCCH
Confidence 998755432 111 112346889999999887
No 70
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.62 E-value=6.4e-15 Score=136.32 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=88.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCC--CC-CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFP--GI-HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~--~~-~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.|+++|.+|+|||||+|+|++.... +. .....||...... .+. ++ +
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~----------------~~~-~~-----~--------- 49 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG----------------TIE-VG-----N--------- 49 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE----------------EEE-EC-----C---------
Confidence 3899999999999999999875421 00 1111222111100 000 00 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||+.. +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||
T Consensus 50 --~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 50 --ARLKFWDLGGQES-----------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred --EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEc
Confidence 4589999999864 45566677899999999999985221122223333322 247899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ....+.......+....+++.+||++|.|+
T Consensus 117 ~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 117 QDLPDALSVEE-IKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred cccccCCCHHH-HHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 99865422111 111111111001223457899999999987
No 71
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=1e-14 Score=136.61 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=66.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+++ +.+.+....+..+...++|+++|+||+|+...
T Consensus 67 ~~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 67 YLLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred EEEEEEECCCChh-----------hHHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 3478999999865 55667778899999999999986 55555444444444567899999999998642
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. .+........++ .+...++.+||++|.|+
T Consensus 135 ~~-~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi 165 (179)
T cd01890 135 DP-ERVKQQIEDVLG----LDPSEAILVSAKTGLGV 165 (179)
T ss_pred CH-HHHHHHHHHHhC----CCcccEEEeeccCCCCH
Confidence 21 111111111122 22235789999999988
No 72
>PRK13796 GTPase YqeH; Provisional
Probab=99.62 E-value=6.8e-15 Score=153.27 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=100.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQT 236 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~~ 236 (551)
|.+.+.......++|++|+|+.+. .......+.+.. .++|+++|+||+|+.+.. ...+.........+ .
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~-~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g----~ 131 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDF-NGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG----L 131 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccC-CCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC----C
Confidence 555444433344499999999862 222332333332 268999999999998632 12221122122222 2
Q ss_pred CCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 237 PEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 237 ~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
....++.+||+++.++ ++|++.+..+. ....++++|.||
T Consensus 132 ~~~~v~~vSAk~g~gI-------------~eL~~~I~~~~----------------------------~~~~v~vvG~~N 170 (365)
T PRK13796 132 RPVDVVLISAQKGHGI-------------DELLEAIEKYR----------------------------EGRDVYVVGVTN 170 (365)
T ss_pred CcCcEEEEECCCCCCH-------------HHHHHHHHHhc----------------------------CCCeEEEEcCCC
Confidence 2235788999988887 45555542110 124789999999
Q ss_pred CChhHHHHHHHhCCC---CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLERDF---PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~~~---~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||||++|+|++... ..+.++..||||+......-+....++||||+..+.
T Consensus 171 vGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~~ 224 (365)
T PRK13796 171 VGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHRH 224 (365)
T ss_pred CcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccccc
Confidence 999999999997531 135689999999865543333446899999998654
No 73
>KOG1191|consensus
Probab=99.62 E-value=6.5e-16 Score=158.63 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++.++|+|+|||||||++|+|.+++ .+.|++.||||| .+. ++..|.++.|+||+|++. +....+++.|.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d--rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~~gI-- 339 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED--RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEALGI-- 339 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC--ceEeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHHHhH--
Confidence 357899999999999999999999999 699999999998 444 567899999999999998 46678999998
Q ss_pred HhhhhhhccccCcc
Q psy11743 381 LNRFQCSLVNSPVL 394 (551)
Q Consensus 381 ~~~~~~~~~~~~~~ 394 (551)
.|++++++++|+.
T Consensus 340 -~rA~k~~~~advi 352 (531)
T KOG1191|consen 340 -ERARKRIERADVI 352 (531)
T ss_pred -HHHHHHHhhcCEE
Confidence 9999999999974
No 74
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.62 E-value=4.4e-15 Score=154.50 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred chHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccC
Q psy11743 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQ 235 (551)
Q Consensus 160 ~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~ 235 (551)
+|.+.+..+...++++++|+|+.+ .......++.+.+. ++|+++|+||+|+++.. .+.+.........+
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d-~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g---- 124 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFD-FEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG---- 124 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcC-CCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC----
Confidence 367777777789999999999985 23333334444432 68999999999998642 22221112222222
Q ss_pred CCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeec
Q psy11743 236 TPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQY 315 (551)
Q Consensus 236 ~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (551)
.....++.+||+++.|+ ++|++.+..+ . ....++++|.+
T Consensus 125 ~~~~~i~~vSAk~g~gv-------------~eL~~~l~~~------------------~----------~~~~v~~vG~~ 163 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGI-------------DELLDKIKKA------------------R----------NKKDVYVVGVT 163 (360)
T ss_pred CCcCcEEEecCCCCCCH-------------HHHHHHHHHH------------------h----------CCCeEEEECCC
Confidence 22224788999998887 4555554211 0 12479999999
Q ss_pred CCChhHHHHHHHhCCC---CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 316 STGKTTFIRYLLERDF---PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 316 ~~gKss~~n~l~~~~~---~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
||||||++|+|++... ..+.++..||||+......-+....++||||+..+.
T Consensus 164 nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~ 218 (360)
T TIGR03597 164 NVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH 218 (360)
T ss_pred CCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh
Confidence 9999999999998742 136789999999855433334567899999998753
No 75
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=6e-15 Score=136.57 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=89.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+|++++..+. ....||...... +.... +
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~----------------~--------------- 47 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCSK----------------N--------------- 47 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CCcCCcchheEEEEEEECC----------------E---------------
Confidence 57999999999999999999988752 122223221111 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVL 208 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVl 208 (551)
...+.++||||... +......++..+|++++|+|..+.........++..+.+ .+.|+++|+
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 48 -ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred -EEEEEEEECCCCCc-----------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 03488999999864 344455677899999999999863222233444444432 468999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..++..... ..+... ...+.+.+||++|.|+
T Consensus 116 nK~Dl~~~~~v~~~~~-~~~~~~-----~~~~~~e~SA~~g~~v 153 (165)
T cd04140 116 NKCDESHKREVSSNEG-AACATE-----WNCAFMETSAKTNHNV 153 (165)
T ss_pred ECccccccCeecHHHH-HHHHHH-----hCCcEEEeecCCCCCH
Confidence 9999975322211111 111111 1235678999999987
No 76
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=8.7e-15 Score=134.41 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=87.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. . .||.... ..+. + +..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~--~~t~~~~~~~~~------------------~-------------~~~-- 43 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T--IPTVGFNVEMLQ------------------L-------------EKH-- 43 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c--cCccCcceEEEE------------------e-------------CCc--
Confidence 48999999999999999999987532 1 2232111 0000 0 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-HHHHHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-SIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+++......... +...+.. .+.|+++|+||+|
T Consensus 44 ~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEK-----------MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcc
Confidence 3489999999753 44455667889999999999986221122222 2233322 4789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ ....+ .+.........+++.+||++|.|+
T Consensus 113 l~~~~~~~~-i~~~~-~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 113 LPGALTAEE-ITRRF-KLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred cccCcCHHH-HHHHc-CCcccCCCCcEEEEecccccCCCh
Confidence 864211111 11111 111111223346788999999988
No 77
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=9.3e-16 Score=158.36 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=119.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+..+++++|.|||||||++|.|++..+ ..+++.++||+.. .+..++.++.++||||+..+. .. +...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~---~~---l~~~~~ 122 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK---GS---LEKAMV 122 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc---cc---HHHHHH
Confidence 446899999999999999999999885 5788999999732 355678899999999997643 12 222233
Q ss_pred hhhhhhccccCccc-------c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVLK-------G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 382 ~~~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
..+..++..+|++. + ...+....+.|+|+||+|++-+ ....+.+.+.
T Consensus 123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-----------------~~~~~~~~l~ 185 (339)
T PRK15494 123 RCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-----------------YLNDIKAFLT 185 (339)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-----------------cHHHHHHHHH
Confidence 33444455555421 0 0011123345667777776200 0011111111
Q ss_pred hccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCC
Q psy11743 446 KDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDF 525 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 525 (551)
....+....+++++.+.+.+.|.+.+...+++.+ .+++.+.+ +|.
T Consensus 186 -------------------------~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~----~~~~~~~~------td~ 230 (339)
T PRK15494 186 -------------------------ENHPDSLLFPISALSGKNIDGLLEYITSKAKISP----WLYAEDDI------TDL 230 (339)
T ss_pred -------------------------hcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC----CCCCCCCC------CCC
Confidence 0111123445666666666555555444445555 88889999 999
Q ss_pred CCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 526 TKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
|.+|.++|.+||++...+++|||+-
T Consensus 231 ~~~~~~~eiiRe~~~~~~~~EiP~~ 255 (339)
T PRK15494 231 PMRFIAAEITREQLFLNLQKELPYK 255 (339)
T ss_pred CHHHHHHHHHHHHHHhhCCcccCce
Confidence 9999999999999999999999973
No 78
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.61 E-value=1.3e-14 Score=133.77 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=89.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+.. ...+|...... .+. . .++.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~-~~~---~-----------~~~~~--------------~ 48 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP---QQLSTYALTLY-KHN---A-----------KFEGK--------------T 48 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CcCCceeeEEE-EEE---E-----------EECCE--------------E
Confidence 369999999999999999999877531 11122111000 000 0 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-hHHHHHHHHHhCC--CCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-DEFRRSIEALRGH--DDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-~~~~~~l~~l~~~--~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+++ ..+ .....++..+++. +.|+++|+||+|+
T Consensus 49 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 49 ILVDFWDTAGQER-----------FQTMHASYYHKAHACILVFDVTR-KITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEEeCCCchh-----------hhhhhHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 2478999999754 55566778899999999999985 322 2234566656543 6899999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... .+. . .+. .. ...+.+.+||++|.|+
T Consensus 117 ~~~~~-~~~-~-~~~-~~-----~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 117 DPSVT-QKK-F-NFA-EK-----HNLPLYYVSAADGTNV 146 (161)
T ss_pred chhHH-HHH-H-HHH-HH-----cCCeEEEEeCCCCCCH
Confidence 53211 111 1 111 11 1236788999999988
No 79
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=1e-14 Score=136.21 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+.. ..||... ...+. ++ +
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~----~~~t~g~~~~~~~------------------~~-----~-------- 57 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT----ISPTLGFQIKTLE------------------YE-----G-------- 57 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC----cCCccccceEEEE------------------EC-----C--------
Confidence 45789999999999999999999885421 1122110 00000 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ . ..+.|+++|+|
T Consensus 58 ---~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n 123 (173)
T cd04154 58 ---YKLNIWDVGGQKT-----------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILAN 123 (173)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3489999999754 3445566789999999999998621111222233222 2 25789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+. +.. ......+++.+||++|.|+
T Consensus 124 K~Dl~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 124 KQDLPGALSEEE-IREALE-LDK-ISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred CcccccCCCHHH-HHHHhC-ccc-cCCCceEEEeccCCCCcCH
Confidence 999975321111 122211 110 1223457899999999988
No 80
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=8.2e-15 Score=155.09 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=95.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|.|+++|.+|||||||+|+|++.+.. +...+++|.+..+.-..- .+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l----------------~~--------------- 243 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDV----------------AD--------------- 243 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEe----------------CC---------------
Confidence 3489999999999999999999998864 455666666654321110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH----HHHHHHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR----RSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~----~~l~~l~~~~~~vilVlNK 210 (551)
...+.++||||+........- ..|. .+...+..||++|+|+|+++ +.+.... .++..+...++|+++|+||
T Consensus 244 -~~~~~l~DTaG~~r~lp~~lv--e~f~-~tl~~~~~ADlIL~VvDaS~-~~~~e~l~~v~~iL~el~~~~~pvIiV~NK 318 (426)
T PRK11058 244 -VGETVLADTVGFIRHLPHDLV--AAFK-ATLQETRQATLLLHVVDAAD-VRVQENIEAVNTVLEEIDAHEIPTLLVMNK 318 (426)
T ss_pred -CCeEEEEecCcccccCCHHHH--HHHH-HHHHHhhcCCEEEEEEeCCC-ccHHHHHHHHHHHHHHhccCCCCEEEEEEc
Confidence 024789999998542111111 1122 34456789999999999986 3333332 3444444457899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... . ... ... +.+ ..+++||++|.|+
T Consensus 319 iDL~~~~~~-~-~~~--~~~----~~~--~~v~ISAktG~GI 350 (426)
T PRK11058 319 IDMLDDFEP-R-IDR--DEE----NKP--IRVWLSAQTGAGI 350 (426)
T ss_pred ccCCCchhH-H-HHH--Hhc----CCC--ceEEEeCCCCCCH
Confidence 999753211 1 111 111 111 2478999999988
No 81
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.61 E-value=7e-15 Score=136.07 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=89.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+++|++..+.. ...+|.. .+. .+..+. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~-----------------~------------- 49 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE---SYISTIGVDFKIRTIELDG-----------------K------------- 49 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEECC-----------------E-------------
Confidence 579999999999999999999887532 2222221 111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.+ .+.|+++|+||
T Consensus 50 --~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK 116 (166)
T cd01869 50 --TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 116 (166)
T ss_pred --EEEEEEEECCCcHh-----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 02478999999653 455666778999999999999863222222344444433 35799999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+. +........ ...+.+.+||++|.|+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 117 CDLTDKRVVDYSEAQEFADE-------LGIPFLETSAKNATNV 152 (166)
T ss_pred hhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCcCH
Confidence 9986543221 111111111 1236789999999988
No 82
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.7e-14 Score=151.78 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..|+|+|.||||||||+|+|++.+. .+...|.+|......+..- .. .
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~-----------------~~----~----------- 205 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVET-----------------DD----G----------- 205 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEE-----------------eC----C-----------
Confidence 4899999999999999999998773 2344455555544332110 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilVl 208 (551)
..++++||||+..+... +..+.......++++|++++|+|++.. ........+.+.+.. .++|.++|+
T Consensus 206 ~~~~laD~PGliega~~----~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 206 RSFVMADIPGLIEGASE----GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred ceEEEEECCCCcccccc----cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 45899999999763321 111333344557889999999999742 222333455555543 368999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....+. +......++ .+++++||+++.|+
T Consensus 282 NK~DL~~~~e~---l~~l~~~l~-------~~i~~iSA~tgeGI 315 (424)
T PRK12297 282 NKMDLPEAEEN---LEEFKEKLG-------PKVFPISALTGQGL 315 (424)
T ss_pred eCCCCcCCHHH---HHHHHHHhC-------CcEEEEeCCCCCCH
Confidence 99998543221 111111121 36788999999987
No 83
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.61 E-value=7.9e-15 Score=135.25 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=87.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. ...+|+ +....... .+. . .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~-----------------~~~-------------~-~ 47 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIE-----------------IDG-------------E-V 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEE-----------------ECC-------------E-E
Confidence 79999999999999999999987532 222222 22111000 000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 48 ~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 48 CLLDILDTAGQEE-----------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEECCCccc-----------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 2478999999764 44455667889999999999985221122223333332 34689999999999
Q ss_pred CCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+..... +......... ..+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 150 (164)
T smart00173 117 LESERVVSTEEGKELARQW-------GCPFLETSAKERVNV 150 (164)
T ss_pred ccccceEcHHHHHHHHHHc-------CCEEEEeecCCCCCH
Confidence 97532211 1111111111 246789999999988
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=8.4e-15 Score=135.48 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=90.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||+++|++..+.. ...+|.. .. ..+..+. .
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~-----------------~------------ 50 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE---RQGNTIGVDFTMKTLEIEG-----------------K------------ 50 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc---cCCCccceEEEEEEEEECC-----------------E------------
Confidence 4789999999999999999999876521 1122211 11 1111000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlN 209 (551)
-..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 51 ---~~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 51 ---RVKLQIWDTAGQER-----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred ---EEEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 02478999999643 455666778899999999999863222233455555543 4678999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+....+.. +........ ......+.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 117 KCDLEEQREVLFEEACTLAEK------NGMLAVLETSAKESQNV 154 (165)
T ss_pred CcccccccccCHHHHHHHHHH------cCCcEEEEEECCCCCCH
Confidence 99997543211 111111111 11235688999999887
No 85
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=1.5e-14 Score=140.68 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=83.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
+.+++|||||+.. +.+.+...+. .+|++++|+|+.. +....+.+++.++...++|+++|+||+|+.
T Consensus 84 ~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 84 KLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 4689999999854 5555555553 7999999999986 788999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHccc----------------------ccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhh
Q psy11743 215 DHQQLMRVYGALMWSLGK----------------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDL 272 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~----------------------l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i 272 (551)
+.....+........+.. ......+|++.+||.+|.|+ ++|.+.+
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi-------------~~L~~~L 218 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL-------------DLLHAFL 218 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH-------------HHHHHHH
Confidence 765544433333222221 01223458899999999988 5666666
Q ss_pred hcch
Q psy11743 273 QSLP 276 (551)
Q Consensus 273 ~~~~ 276 (551)
..+|
T Consensus 219 ~~lp 222 (224)
T cd04165 219 NLLP 222 (224)
T ss_pred HhcC
Confidence 5443
No 86
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.60 E-value=9.7e-15 Score=135.19 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=89.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eE--EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RF--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+|+|++..+... ..||.. .+ ..+... +.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~------------- 48 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGIDFKVKTVFRN-----------------DK------------- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeEEEEEEEEEC-----------------CE-------------
Confidence 5799999999999999999999875321 112221 11 011000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|..+........+++..+.. ...|+++|+||
T Consensus 49 --~~~~~l~Dt~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 49 --RVKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred --EEEEEEEECCChHH-----------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 02488999999753 444556778999999999999853222223445555543 35789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... +........++ .+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv 151 (165)
T cd01865 116 CDMEDERVVSSERGRQLADQLG-------FEFFEASAKENINV 151 (165)
T ss_pred cccCcccccCHHHHHHHHHHcC-------CEEEEEECCCCCCH
Confidence 9997543211 11111111121 25788999999988
No 87
>COG1159 Era GTPase [General function prediction only]
Probab=99.60 E-value=2.4e-15 Score=146.92 Aligned_cols=196 Identities=20% Similarity=0.266 Sum_probs=144.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|+||||||||+|+|+|++. +.||+.|+|||+.. ++.++.|+.|+||||++.|+ .+++..+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk------~~l~~~m~~ 77 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK------HALGELMNK 77 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc------hHHHHHHHH
Confidence 45789999999999999999999994 89999999998443 55689999999999999886 344444446
Q ss_pred hhhhhccccCcccccccccccceeEEE-ecc-cCCCCccchhhhhhhhhccChhhHHHHHHHHHHh-ccchhhh--ccc-
Q psy11743 383 RFQCSLVNSPVLKGKVLQTPEVARVYI-GSF-WDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK-DMPSVFG--KEG- 456 (551)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~~--~~~- 456 (551)
.+..++.++|++ .++| +.. |.. ..+.+.+.|+. ..|++.+ +..
T Consensus 78 ~a~~sl~dvDli-----------lfvvd~~~~~~~--------------------~d~~il~~lk~~~~pvil~iNKID~ 126 (298)
T COG1159 78 AARSALKDVDLI-----------LFVVDADEGWGP--------------------GDEFILEQLKKTKTPVILVVNKIDK 126 (298)
T ss_pred HHHHHhccCcEE-----------EEEEeccccCCc--------------------cHHHHHHHHhhcCCCeEEEEEcccc
Confidence 666677776643 2222 222 332 33445555543 2355554 111
Q ss_pred hH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCCccchHH
Q psy11743 457 KK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRL 535 (551)
Q Consensus 457 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 535 (551)
-. +..+..+.+.+.....+..+.|++++++.+.+.|.+.+...+++.+ .|++.|.+ +|.|++|.++|.+
T Consensus 127 ~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~----~~yp~d~i------tD~~~rf~~aEii 196 (298)
T COG1159 127 VKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP----WYYPEDQI------TDRPERFLAAEII 196 (298)
T ss_pred CCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC----CcCChhhc------cCChHHHHHHHHH
Confidence 11 2312233333444555678889999999999999999888888888 99999999 9999999999999
Q ss_pred HHHHHHHhHhhhhhc
Q psy11743 536 IEVADKMLAEDIAHL 550 (551)
Q Consensus 536 ~~~~~~~~~~~~~~~ 550 (551)
||++..++++|||+-
T Consensus 197 REk~~~~l~eElPhs 211 (298)
T COG1159 197 REKLLLLLREELPHS 211 (298)
T ss_pred HHHHHHhcccccCce
Confidence 999999999999974
No 88
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=8.2e-15 Score=136.50 Aligned_cols=149 Identities=22% Similarity=0.253 Sum_probs=89.3
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|++|||||||+|+|++.+. .+...+.+|.+....... ++. + ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~-----------------~~~----~-----------~~~~ 47 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVE-----------------VPD----G-----------ARIQ 47 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEE-----------------cCC----C-----------CeEE
Confidence 589999999999999999875 233334444333221110 000 1 4589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC------CChHHHHHHHHHhC----------CCCcE
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDEFRRSIEALRG----------HDDKI 204 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~------~~~~~~~~l~~l~~----------~~~~v 204 (551)
++||||+...... ...+.......+..+|++++|+|+.+.. .......+...+.. .++|+
T Consensus 48 i~DtpG~~~~~~~----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (176)
T cd01881 48 VADIPGLIEGASE----GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV 123 (176)
T ss_pred EEeccccchhhhc----CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence 9999998642211 1112334455678899999999998631 11122223333321 36899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+........... ..+ . .....+++.+||+++.|+
T Consensus 124 ivv~NK~Dl~~~~~~~~~~~-~~~--~---~~~~~~~~~~Sa~~~~gl 165 (176)
T cd01881 124 IYVLNKIDLDDAEELEEELV-REL--A---LEEGAEVVPISAKTEEGL 165 (176)
T ss_pred EEEEEchhcCchhHHHHHHH-HHH--h---cCCCCCEEEEehhhhcCH
Confidence 99999999987655433211 111 1 122346889999988887
No 89
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=2.5e-14 Score=152.27 Aligned_cols=125 Identities=24% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++.+.+.+...|++|++....... +++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~----------------------~~g-------- 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFE----------------------LNG-------- 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEE----------------------ECC--------
Confidence 34579999999999999999999998876666667666554322111 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... .++. . -......++..+|++++|+|+++ +.+..+. ++..+...++|+++|+||+|+
T Consensus 251 ---~~v~l~DTaG~~~~~~-~ie~-~-gi~~~~~~~~~aD~il~V~D~s~-~~s~~~~-~l~~~~~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 251 ---ILIKLLDTAGIREHAD-FVER-L-GIEKSFKAIKQADLVIYVLDASQ-PLTKDDF-LIIDLNKSKKPFILVLNKIDL 322 (442)
T ss_pred ---EEEEEeeCCCcccchh-HHHH-H-HHHHHHHHHhhCCEEEEEEECCC-CCChhHH-HHHHHhhCCCCEEEEEECccC
Confidence 3478999999975321 1110 0 01234567789999999999986 5555444 566666568899999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 323 ~~~ 325 (442)
T TIGR00450 323 KIN 325 (442)
T ss_pred CCc
Confidence 754
No 90
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.60 E-value=1.8e-14 Score=132.48 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=86.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+++|++..... ....||..... .+.+ + +
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~--~~~~~t~g~~~~~~~~------------------~-----~----------- 44 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS--QIIVPTVGFNVESFEK------------------G-----N----------- 44 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc--ceecCccccceEEEEE------------------C-----C-----------
Confidence 48999999999999999999875311 11122221100 0000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-HHHHHHHHHh------CCCCcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-EFRRSIEALR------GHDDKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~------~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+++ ..+. ....++..+. ..+.|+++|+|
T Consensus 45 ~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 45 LSFTAFDMSGQGK-----------YRGLWEHYYKNIQGIIFVIDSSD-RLRLVVVKDELELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred EEEEEEECCCCHh-----------hHHHHHHHHccCCEEEEEEeCCc-HHHHHHHHHHHHHHHcCcccccCCCCEEEEEe
Confidence 3488999999764 45556677899999999999985 2221 1122333221 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +.... .+... .....+++.+||++|.|+
T Consensus 113 K~Dl~~~~~~~~-~~~~l-~~~~~-~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 113 KMDLPDALTAVK-ITQLL-GLENI-KDKPWHIFASNALTGEGL 152 (162)
T ss_pred CccccCCCCHHH-HHHHh-CCccc-cCceEEEEEeeCCCCCch
Confidence 999975322111 11111 11111 111235678999999988
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.59 E-value=1.5e-14 Score=132.85 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=89.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++.++.. ...+..+.+.......-+ +. ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~---------------~~ 49 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLE----------------DK---------------TV 49 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEEC----------------CE---------------EE
Confidence 69999999999999999999988642 222322322222111000 00 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC--CCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH--DDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~--~~~vilVlNK~Dl~ 214 (551)
.+.+|||||... +.......+..+|++++|+|+.+.........++..+. .. +.|+++|+||+|+.
T Consensus 50 ~l~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 50 RLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 488999999643 45566777899999999999985221222234444433 22 48999999999995
Q ss_pred CHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... .+....... ....+.+.+||.++.|+
T Consensus 119 ~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 119 DKRQVSTEEGEKKAK-------ELNAMFIETSAKAGHNV 150 (161)
T ss_pred ccCccCHHHHHHHHH-------HhCCEEEEEeCCCCCCH
Confidence 43221 111111111 11246788999999987
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.59 E-value=1.8e-14 Score=130.94 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=91.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|++...... ..+|.........-. ++ +. .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~---~~~t~~~~~~~~~~~----~~----------~~---------------~ 48 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN---YKSTIGVDFKSKTIE----ID----------GK---------------T 48 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc---cCCceeeeeEEEEEE----EC----------CE---------------E
Confidence 3699999999999999999999885322 222222111100000 00 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~Dl 213 (551)
..+.++||||... +......+++++|++++|+|+.+.........++..+... +.|+++|+||+|+
T Consensus 49 ~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 49 VKLQIWDTAGQER-----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEecCChHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 3488999999753 5556777889999999999998522222224455555443 5899999999999
Q ss_pred CCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+.. ..+....... ....+++.+||.++.++
T Consensus 118 ~~~~~~~~~~~~~~~~-------~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 118 EDQRQVSTEEAQQFAK-------ENGLLFFETSAKTGENV 150 (159)
T ss_pred cccccccHHHHHHHHH-------HcCCeEEEEecCCCCCH
Confidence 72222 1222222221 12347899999998887
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.59 E-value=2e-14 Score=133.76 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+++|....+. . ..||... ...+... .
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~--~~~t~g~~~~~~~~~-----------------------~-------- 52 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--T--TIPTVGFNVETVTYK-----------------------N-------- 52 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--c--ccCCcccceEEEEEC-----------------------C--------
Confidence 3578999999999999999999876642 1 1223211 1111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHhC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALRG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~~~vilVlN 209 (551)
..+.++||||... +......++.++|++++|+|+.+.........++ +.+.. .+.|+++|+|
T Consensus 53 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 ---VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 3489999999864 4445566789999999999998622122222333 33332 3589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ .... ..+...... ..+.+.+||++|.|+
T Consensus 119 K~Dl~~~~~~~~-i~~~-~~~~~~~~~-~~~~~~~SAk~g~gv 158 (168)
T cd04149 119 KQDLPDAMKPHE-IQEK-LGLTRIRDR-NWYVQPSCATSGDGL 158 (168)
T ss_pred CcCCccCCCHHH-HHHH-cCCCccCCC-cEEEEEeeCCCCCCh
Confidence 999864211111 1111 112221122 235778999999998
No 94
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.59 E-value=1.9e-14 Score=133.55 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E--EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||+|++++..+. ....||... + ..+... +.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-----------------~~------------ 50 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN---PSFISTIGIDFKIRTIELD-----------------GK------------ 50 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC---cccccCccceEEEEEEEEC-----------------CE------------
Confidence 478999999999999999999998752 222222211 1 111110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlN 209 (551)
...+.++||||... +......++.++|++++|+|+.+........+++..+.+ .+.|+++|.|
T Consensus 51 ---~~~l~l~D~~g~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 51 ---KIKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred ---EEEEEEEeCCchHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 02488999999653 444556778999999999999852222222344444443 3679999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..... +......... ..+.+.+||.+|.++
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 153 (167)
T cd01867 117 KCDMEEKRVVSKEEGEALADEY-------GIKFLETSAKANINV 153 (167)
T ss_pred CcccccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 99997532211 1111111111 235789999999888
No 95
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.59 E-value=1.5e-14 Score=132.24 Aligned_cols=143 Identities=24% Similarity=0.167 Sum_probs=87.9
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
|+|.+|+|||||+|+|++... .....+++|.+....... ++. ..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~------------------------------~~~---~~~~ 46 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFK------------------------------LGG---KEIE 46 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEe------------------------------eCC---eEEE
Confidence 589999999999999999863 223333334333211100 000 3489
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~ 218 (551)
+|||||+.+...... -......++ +++|++++|+|+... .....+...+...++|+++|+||+|+.+...
T Consensus 47 liDtpG~~~~~~~~~-----~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~ 118 (158)
T cd01879 47 IVDLPGTYSLSPYSE-----DEKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGLPVVVALNMIDEAEKRG 118 (158)
T ss_pred EEECCCccccCCCCh-----hHHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCCCEEEEEehhhhccccc
Confidence 999999975322110 012233344 599999999999852 2233455556667899999999999976543
Q ss_pred HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 219 LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...........+ ..+++.+||.++.++
T Consensus 119 ~~~~~~~~~~~~-------~~~~~~iSa~~~~~~ 145 (158)
T cd01879 119 IKIDLDKLSELL-------GVPVVPTSARKGEGI 145 (158)
T ss_pred chhhHHHHHHhh-------CCCeEEEEccCCCCH
Confidence 222222111111 236789999998887
No 96
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=6.2e-15 Score=140.73 Aligned_cols=127 Identities=17% Similarity=0.274 Sum_probs=84.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|++|+|||||+|+|+|++.+...... +.|++....- ..+.+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~----------------------~~~~~----------- 48 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES----------------------AVWDG----------- 48 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee----------------------EEECC-----------
Confidence 6999999999999999999999865433322 2333322110 00111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilVlNK~ 211 (551)
+.+.+|||||+.+.....-....++.+.+.....++|++|+|+|+.+ ++..+...++.+++. ..++++|+|++
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 56999999999875321111111233333344578999999999985 788888888887653 26799999999
Q ss_pred CCCCHHHH
Q psy11743 212 DMVDHQQL 219 (551)
Q Consensus 212 Dl~~~~~~ 219 (551)
|.+....+
T Consensus 127 d~l~~~~~ 134 (196)
T cd01852 127 DDLEGGTL 134 (196)
T ss_pred cccCCCcH
Confidence 98865433
No 97
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=2.3e-14 Score=130.39 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=88.5
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
|+++|++|+|||||+|+|.+.++. ....||.... ..+.. |. .
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~------------------~~----------------~ 44 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS---EDTIPTVGFNMRKVTK------------------GN----------------V 44 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC---cCccCCCCcceEEEEE------------------CC----------------E
Confidence 799999999999999999998752 1112222111 11111 11 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl 213 (551)
.+.++||||... +......++..+|++++|+|+............+..+. ..++|+++|+||+|+
T Consensus 45 ~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 113 (159)
T cd04159 45 TLKVWDLGGQPR-----------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDL 113 (159)
T ss_pred EEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 488999999753 55566778899999999999985221122222232222 246899999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.......+... .+ .+... .....+.+.+|+++|.|+
T Consensus 114 ~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 114 PGALSVDELIE-QM-NLKSI-TDREVSCYSISCKEKTNI 149 (159)
T ss_pred cCCcCHHHHHH-Hh-Ccccc-cCCceEEEEEEeccCCCh
Confidence 76433222111 11 11111 122356789999999887
No 98
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.59 E-value=1.8e-14 Score=137.80 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=89.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+|+|.+|||||||+|++++.++.. ...||+. .+. .+..+. .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~---~~~pt~~~~~~~~~i~~~~-----------------~-------------- 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE---EYIPTEHRRLYRPAVVLSG-----------------R-------------- 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc---ccCCccccccceeEEEECC-----------------E--------------
Confidence 69999999999999999999987632 2334432 111 111110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh------CCCCcEEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR------GHDDKIRIVL 208 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~------~~~~~vilVl 208 (551)
...+.+|||||...... ..+.++......++..+|++++|+|+.+.........+.+.+. ..+.|+++|+
T Consensus 48 -~~~l~i~Dt~G~~~~~~---~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 48 -VYDLHILDVPNMQRYPG---TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred -EEEEEEEeCCCcccCCc---cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 02478999999864211 1112233334456789999999999986221222233444332 2468999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+...+.... ....... .....+.+.+||++|.|+
T Consensus 124 NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~e~Sak~g~~v 162 (198)
T cd04142 124 NKRDQQRHRFAPRHVLSVLVR------KSWKCGYLECSAKYNWHI 162 (198)
T ss_pred ECccccccccccHHHHHHHHH------HhcCCcEEEecCCCCCCH
Confidence 9999965322111 1111110 011346788999999988
No 99
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=2.4e-14 Score=135.98 Aligned_cols=143 Identities=21% Similarity=0.262 Sum_probs=87.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+|+|++..+.. ...+|. +.+. .+... |..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~---~~~~t~~~~~~~~~~~~-----------------~~~-------------- 46 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE---TYDPTIEDSYRKQVVVD-----------------GQP-------------- 46 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchHhhEEEEEEEC-----------------CEE--------------
Confidence 48999999999999999999876521 122332 1111 11110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|..+.........++..+.. .+.|+++|+|
T Consensus 47 -~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 47 -CMLEVLDTAGQEE-----------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred -EEEEEEECCCchh-----------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 2378999999753 455566678999999999999852222223445444432 3579999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+.......+. . .. ..+.+.+||++|.|+
T Consensus 115 K~Dl~~~~~v~~~~~~~~~-~----~~-~~~~~e~SAk~~~~v 151 (190)
T cd04144 115 KCDKVYEREVSTEEGAALA-R----RL-GCEFIEASAKTNVNV 151 (190)
T ss_pred ChhccccCccCHHHHHHHH-H----Hh-CCEEEEecCCCCCCH
Confidence 9999643222111111111 0 01 135688999999988
No 100
>KOG1191|consensus
Probab=99.59 E-value=8.6e-15 Score=150.49 Aligned_cols=127 Identities=23% Similarity=0.270 Sum_probs=95.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..+.|+|+|+||||||||+|+|+.++..+|..-|++|+|.+.+... +.|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~------~~G------------------------ 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT------VNG------------------------ 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee------cCC------------------------
Confidence 45689999999999999999999999999999999999998765332 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------------CC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------------HD 201 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------------~~ 201 (551)
..+.++||+|+.....+.++. . -....+..+.+||++++|+|+.. ..+.++..+.+.+.. ..
T Consensus 316 ---~~v~L~DTAGiRe~~~~~iE~-~-gI~rA~k~~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~ 389 (531)
T KOG1191|consen 316 ---VPVRLSDTAGIREESNDGIEA-L-GIERARKRIERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEK 389 (531)
T ss_pred ---eEEEEEeccccccccCChhHH-H-hHHHHHHHHhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccc
Confidence 459999999998722222221 1 13355677899999999999964 455566565555542 23
Q ss_pred CcEEEEEcCCCCCCH
Q psy11743 202 DKIRIVLNKADMVDH 216 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~ 216 (551)
.++++|.||.|+..+
T Consensus 390 ~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 390 QRIILVANKSDLVSK 404 (531)
T ss_pred cceEEEechhhccCc
Confidence 688999999999875
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.58 E-value=2.6e-14 Score=134.89 Aligned_cols=151 Identities=14% Similarity=0.162 Sum_probs=88.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||++++++..+. .. .||... ...+... ..+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~--~~t~~~~~~~~~~~-----------------------------~~~~ 49 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NT--VPTKGFNTEKIKVS-----------------------------LGNS 49 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--Cc--CCccccceeEEEee-----------------------------ccCC
Confidence 468999999999999999999987753 11 233211 1110000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH----HHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE----ALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~----~l~~~~~~vilVlNK 210 (551)
.-..+.++||||... +......++..+|++++|+|+.+.........++. .....++|+++|+||
T Consensus 50 ~~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 50 KGITFHFWDVGGQEK-----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred CceEEEEEECCCcHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 003489999999753 44455667889999999999985211111122222 223357899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ .. .+..+.........+++.+||++|.|+
T Consensus 119 ~D~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 119 QDLPNALSVSE-VE-KLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred cCccccCCHHH-HH-HHhCccccCCCCceEEEEeecccCCCH
Confidence 99864211111 11 111111111122346788999999998
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.58 E-value=3.3e-14 Score=130.72 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=88.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|++|+|||||+|+|++..+.. ...|.++.+.. ..+..+. .
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~--------------- 47 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDG-----------------K--------------- 47 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECC-----------------E---------------
Confidence 379999999999999999999887532 12222222211 1111110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +.......++.+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 48 ~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 48 KVKLAIWDTAGQER-----------FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEEEECCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 03488999999653 44455667789999999999985221122233443333 3468899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+........ ...+.+.+||++|.|+
T Consensus 117 D~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 117 DKENREVTREEGLKFARK-------HNMLFIETSAKTRDGV 150 (161)
T ss_pred cccccccCHHHHHHHHHH-------cCCEEEEEecCCCCCH
Confidence 997332111111111111 1346889999999988
No 103
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.58 E-value=2.5e-14 Score=132.11 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=88.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+++++...+. . ...||+.. +. .+..+ +..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~-~~~~t~~~~~~~~~~~~-----------------~~~------------- 48 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--E-KYDPTIEDSYRKQVEVD-----------------GQQ------------- 48 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--c-ccCCcchheEEEEEEEC-----------------CEE-------------
Confidence 57999999999999999999976542 1 12233321 11 00000 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|..+........++...+. ..+.|+++|+||
T Consensus 49 --~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (164)
T cd04175 49 --CMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 115 (164)
T ss_pred --EEEEEEECCCccc-----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 2377999999754 45556667899999999999875221122233444433 246899999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ........+ ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 151 (164)
T cd04175 116 CDLEDERVVGKEQGQNLARQW-------GCAFLETSAKAKINV 151 (164)
T ss_pred CcchhccEEcHHHHHHHHHHh-------CCEEEEeeCCCCCCH
Confidence 99975321111 111111111 136789999999988
No 104
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.58 E-value=1.9e-14 Score=132.93 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=89.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||+|+|++.++.. ...|..+++.... +..+ +..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~~------------- 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQID-----------------GKT------------- 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEEC-----------------CEE-------------
Confidence 3689999999999999999999887532 1222222111111 1110 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..++++++|+|+++.........++..+.+ .+.|+++|+||+
T Consensus 52 --~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~ 118 (165)
T cd01868 52 --IKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKS 118 (165)
T ss_pred --EEEEEEeCCChHH-----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 2478999999753 455566778899999999999852222222344444432 358999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...... .+........ ...+.+.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 119 DLRHLRAVPTEEAKAFAEK-------NGLSFIETSALDGTNV 153 (165)
T ss_pred cccccccCCHHHHHHHHHH-------cCCEEEEEECCCCCCH
Confidence 98753221 1111111111 1236788999999887
No 105
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.58 E-value=1.5e-14 Score=134.40 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-.+|+++|.+|||||||+|++++..+..... + +.+..+. ..... .+..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~-t~~~~~~~~~~~~----------------~~~~------------- 52 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-L-TIGVEFGARMITI----------------DGKQ------------- 52 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-C-ccceeEEEEEEEE----------------CCEE-------------
Confidence 3689999999999999999999887532211 1 1111111 10000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......+++.+|++++|+|+++.........++..+++ .+.|+++|+||+
T Consensus 53 --~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~ 119 (168)
T cd01866 53 --IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKC 119 (168)
T ss_pred --EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 2488999999643 555667788999999999999852222223445554443 368899999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+........ ........ ...+.+.+||+++.++
T Consensus 120 Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 120 DLESRREVSYEEGEAFAKE-------HGLIFMETSAKTASNV 154 (168)
T ss_pred ccccccCCCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9974322111 11111111 1235788999999988
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=1.3e-14 Score=130.72 Aligned_cols=132 Identities=21% Similarity=0.167 Sum_probs=81.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++.... ..+|. .+. | .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-----~~~t~----~~~------------------~------------------~ 36 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-----YKKTQ----AVE------------------Y------------------N 36 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-----cccce----eEE------------------E------------------c
Confidence 6999999999999999999987641 11111 000 0 0
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
-.+|||||..... ..+.+.+...++++|++++|+|+.+ +.+.....+...+ ..|+++|+||+|+.+..
T Consensus 37 -~~~iDt~G~~~~~-------~~~~~~~~~~~~~ad~vilv~d~~~-~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 37 -DGAIDTPGEYVEN-------RRLYSALIVTAADADVIALVQSATD-PESRFPPGFASIF---VKPVIGLVTKIDLAEAD 104 (142)
T ss_pred -CeeecCchhhhhh-------HHHHHHHHHHhhcCCEEEEEecCCC-CCcCCChhHHHhc---cCCeEEEEEeeccCCcc
Confidence 2579999974210 1123333445799999999999986 3333333444332 35999999999997532
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+......... ...+++.+||++|.|+
T Consensus 105 ~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 105 VDIERAKELLETA------GAEPIFEISSVDEQGL 133 (142)
T ss_pred cCHHHHHHHHHHc------CCCcEEEEecCCCCCH
Confidence 1111111111111 1235788999999887
No 107
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.58 E-value=2.4e-14 Score=131.75 Aligned_cols=143 Identities=18% Similarity=0.257 Sum_probs=89.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|++|+|||||+|+|++..+. ....+|... +. .+..+ +..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------~~~------------ 48 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS---EQYKSTIGVDFKTKTIEVD-----------------GKR------------ 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEEC-----------------CEE------------
Confidence 37999999999999999999988752 222222221 11 11110 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+||
T Consensus 49 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 49 ---VKLQIWDTAGQER-----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred ---EEEEEEECCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 2478999999643 455667788999999999999862222222344444432 46899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....+.. +......... ..+++.+||.++.|+
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~i 150 (164)
T smart00175 115 SDLEDQRQVSREEAEAFAEEH-------GLPFFETSAKTNTNV 150 (164)
T ss_pred hhcccccCCCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 9987532211 1111111111 235788999998887
No 108
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.58 E-value=3.2e-14 Score=130.66 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=87.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|+|||||+++|....+. . ..||... ...+.+ . .
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~--~~~t~~~~~~~~~~------------------~-----~----------- 42 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--T--TIPTIGFNVETVTY------------------K-----N----------- 42 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--C--cCCccCcCeEEEEE------------------C-----C-----------
Confidence 4899999999999999999876642 1 1222111 111100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+... ......+...+.. .++|+++|+||+|
T Consensus 43 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTS-----------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCC
Confidence 3589999999864 45556677899999999999985211 1112233333332 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ ....+ ..... .....+++++||++|.|+
T Consensus 112 l~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 112 MPGALSEAE-ISEKL-GLSEL-KDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCCCCHHH-HHHHh-Ccccc-CCCcEEEEEeeccCCCCH
Confidence 975321111 11111 11111 112246899999999998
No 109
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=2.7e-14 Score=151.46 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=103.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|++++|||||+|+|++..-.. .+.. ......+....+..-.|...+. . ......+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~--~~~~---~~~~~~~d~~~~e~~rg~T~~~----------~--~~~~~~~ 73 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAK--GGAK---AKKYDEIDSAPEEKARGITINT----------A--HVEYETE 73 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCcc--cccc---ccccccccCChhhhcCCEeEEc----------c--EEEEccC
Confidence 34689999999999999999999863210 0000 0000000000000001111100 0 0000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
-.++.+|||||+.+ |...+...+..+|++++|+|+.. +...++.+.+..+...++| +++|+||+|+
T Consensus 74 -~~~~~~iDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 74 -NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred -CeEEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 04689999999753 67777888899999999999996 7888888999888888888 7789999999
Q ss_pred CCHHHHHHHHH----HHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 214 VDHQQLMRVYG----ALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 214 ~~~~~~~~~~~----~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
.+.++..+... ..+...+. .....|++++||++|.++.
T Consensus 141 ~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~ii~~Sa~~g~n~~ 182 (409)
T CHL00071 141 VDDEELLELVELEVRELLSKYDF--PGDDIPIVSGSALLALEAL 182 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC--CCCcceEEEcchhhccccc
Confidence 97554433322 22222222 1123689999999988663
No 110
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.58 E-value=3.1e-14 Score=130.89 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+. . ...+++ +........ .+ .
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~------~~----------~--------------- 46 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--E-DYEPTKADSYRKKVVL------DG----------E--------------- 46 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--c-ccCCcchhhEEEEEEE------CC----------E---------------
Confidence 37999999999999999999987752 1 222222 211111000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|.+++|+|............+...+. ..+.|+++|+||+
T Consensus 47 ~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 47 DVQLNILDTAGQED-----------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEEEECCChhh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 03488999999754 44556678899999999999875221111223333222 2579999999999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+..... ...........+ ..+++.+||+++.|+
T Consensus 116 D~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 150 (164)
T cd04139 116 DLEDKRQVSSEEAANLARQW-------GVPYVETSAKTRQNV 150 (164)
T ss_pred ccccccccCHHHHHHHHHHh-------CCeEEEeeCCCCCCH
Confidence 9976211 111111111111 236789999999998
No 111
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.57 E-value=2.4e-14 Score=132.08 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||+|+|++..+.. ...||...-. .+... +.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~-------------- 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVR-----------------NK-------------- 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEEC-----------------Ce--------------
Confidence 69999999999999999999988632 2222321110 11100 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--------CCCcEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--------HDDKIRI 206 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--------~~~~vil 206 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.+ .+.|+++
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piil 115 (168)
T cd04119 48 -EVRVNFFDLSGHPE-----------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVV 115 (168)
T ss_pred -EEEEEEEECCccHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEE
Confidence 03488999999853 445566678999999999999862222222344443332 3578999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+....... ....+.... ..+.+.+||++|.|+
T Consensus 116 v~nK~Dl~~~~~~~~~-~~~~~~~~~-----~~~~~~~Sa~~~~gi 155 (168)
T cd04119 116 CANKIDLTKHRAVSED-EGRLWAESK-----GFKYFETSACTGEGV 155 (168)
T ss_pred EEEchhcccccccCHH-HHHHHHHHc-----CCeEEEEECCCCCCH
Confidence 9999999732211110 011111111 135788999999988
No 112
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.57 E-value=3e-14 Score=131.18 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=83.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|+|||||+|+|.|.... . .+| - .+.+.. .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-~---~v~~~~----------------------------------~ 39 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-Q---AVEFND----------------------------------K 39 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-e---EEEECC----------------------------------C
Confidence 6999999999999999999886521 0 011 0 111100 1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+|||||...... ++...+...+.++|++++|+|+.. +.+.....+.. + ..++|+++|+||+|+.+.+
T Consensus 40 --~~iDtpG~~~~~~-------~~~~~~~~~~~~ad~il~v~d~~~-~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 40 --GDIDTPGEYFSHP-------RWYHALITTLQDVDMLIYVHGAND-PESRLPAGLLD-I-GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred --CcccCCccccCCH-------HHHHHHHHHHhcCCEEEEEEeCCC-cccccCHHHHh-c-cCCCCeEEEEEccccCccc
Confidence 2699999864321 134444556789999999999985 32222222222 1 2367899999999986532
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. ........++. ..|++++||++|.|+
T Consensus 108 -~~-~~~~~~~~~~~-----~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 108 -VA-ATRKLLLETGF-----EEPIFELNSHDPQSV 135 (158)
T ss_pred -HH-HHHHHHHHcCC-----CCCEEEEECCCccCH
Confidence 11 12222322322 258899999999988
No 113
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.57 E-value=2.8e-14 Score=160.69 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|++|+|||||+|+|+|.+. .+...|++|.++........ +
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~----------------------~--------- 49 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT----------------------D--------- 49 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC----------------------c---------
Confidence 356899999999999999999999874 35556777776654422111 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccch-HHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+-... ...... ......++ ..+|++++|+|+++. +....+...+.+.++|+++|+||+
T Consensus 50 --~~i~lvDtPG~ysl~~~--~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l---er~l~l~~ql~e~giPvIvVlNK~ 122 (772)
T PRK09554 50 --HQVTLVDLPGTYSLTTI--SSQTSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIPCIVALNML 122 (772)
T ss_pred --eEEEEEECCCccccccc--cccccHHHHHHHHHHhccCCCEEEEEecCCcc---hhhHHHHHHHHHcCCCEEEEEEch
Confidence 45899999999763211 000011 11223332 589999999999852 233445566777899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .|++.+|+.++.|+
T Consensus 123 Dl~~~~~i~id~~~L~~~LG-------~pVvpiSA~~g~GI 156 (772)
T PRK09554 123 DIAEKQNIRIDIDALSARLG-------CPVIPLVSTRGRGI 156 (772)
T ss_pred hhhhccCcHHHHHHHHHHhC-------CCEEEEEeecCCCH
Confidence 98754332222222222222 36889999999886
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=2.9e-14 Score=132.16 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=87.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|..|||||||+|+|++..+.. ..+ ++....+. .... +. .
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~-~~~~~~~~~~~~~-----------------~~----~----------- 46 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVP-RVLPEITIPADVT-----------------PE----R----------- 46 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCC-CcccceEeeeeec-----------------CC----e-----------
Confidence 69999999999999999999987632 111 11111111 0000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK~D 212 (551)
..+.+|||||... +...+..++..+|++++|+|+.+ +.+... ..++..++ ..+.|+++|+||+|
T Consensus 47 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 47 VPTTIVDTSSRPQ-----------DRANLAAEIRKANVICLVYSVDR-PSTLERIRTKWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred EEEEEEeCCCchh-----------hhHHHhhhcccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 3488999999764 23344556789999999999985 222222 23444444 23689999999999
Q ss_pred CCCHHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.... .+........... ..+.+.+||+++.|+
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v 152 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFRE-----IETCVECSAKTLINV 152 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhc-----ccEEEEeccccccCH
Confidence 9764321 1111111111111 126788999999887
No 115
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.57 E-value=5.1e-14 Score=129.75 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=87.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||++++....+. . ..||... ...+.+. .
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~--~~pt~g~~~~~~~~~-----------------------~----------- 43 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYK-----------------------N----------- 43 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--c--cCCCCCcceEEEEEC-----------------------C-----------
Confidence 6999999999999999999766542 1 2333221 1111110 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH-HHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE-ALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~-~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++.++|++++|+|+++........+++. .+.. ...|+++|+||+|
T Consensus 44 ~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 44 ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence 3489999999854 45556677899999999999985221222223232 2222 2589999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+.. .. +.+... ......++.+||++|.|+
T Consensus 113 l~~~~~~~~i~-~~-~~~~~~-~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 113 LPNAMSAAEVT-DK-LGLHSL-RNRNWYIQATCATSGDGL 149 (159)
T ss_pred CCCCCCHHHHH-HH-hCcccc-CCCCEEEEEeeCCCCCCH
Confidence 96431111111 11 122221 112235567999999998
No 116
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=3.9e-14 Score=133.80 Aligned_cols=143 Identities=19% Similarity=0.197 Sum_probs=90.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|.+..+... .||......... ++ +
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~-----------------~~-----~--------- 60 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELA-----------------IG-----N--------- 60 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEE-----------------EC-----C---------
Confidence 458899999999999999999999765322 233222111000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++..........+..+ . ..+.|+++|+||
T Consensus 61 --~~~~~~D~~G~~~-----------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 61 --IKFTTFDLGGHQQ-----------ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred --EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 3488999999854 3445567789999999999998522112222233222 2 247899999999
Q ss_pred CCCCC---HHHHHHHHHHHHHHccccc--------CCCCceEEEecccCCCCC
Q psy11743 211 ADMVD---HQQLMRVYGALMWSLGKVL--------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~---~~~~~~~~~~~~~~l~~l~--------~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.. .+++.+ .++... +.....++.+||++|.|+
T Consensus 128 ~Dl~~~~~~~~i~~-------~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 128 IDAPYAASEDELRY-------ALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred ccccCCCCHHHHHH-------HcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99853 232221 122210 123446889999999987
No 117
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.57 E-value=2.6e-14 Score=131.77 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=88.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+.. ...+|...+ ..... +++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~------------------------------~~~~- 47 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE---KYDPTIEDFYRKEIE------------------------------VDSS- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCchhheEEEEEE------------------------------ECCE-
Confidence 579999999999999999999877532 222332211 11000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
...+.++||||... +......++.++|++++|+|..+.........+...+.+ .+.|+++|+||+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 48 PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEEEECCCccc-----------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 02378999999754 344555677899999999999852221222344444432 478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...........+ .. . ...+.+.+||++|.++
T Consensus 117 Dl~~~~~~~~~~~~~~---~~--~-~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 117 DLESEREVSSAEGRAL---AE--E-WGCPFMETSAKSKTMV 151 (163)
T ss_pred cchhcCccCHHHHHHH---HH--H-hCCEEEEecCCCCCCH
Confidence 9864322111111111 11 1 1236788999999887
No 118
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.57 E-value=3.3e-14 Score=130.91 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=89.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E-E-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F-I-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~-~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|++|+|||||+|+|++.++.. ...+|... + + .+..+. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~v~~~~---------------~~-------------- 49 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE---NQESTIGAAFLTQTVNLDD---------------TT-------------- 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEEECC---------------EE--------------
Confidence 579999999999999999999988632 11222211 1 1 111110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. ...|+++|+||
T Consensus 50 ---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 115 (163)
T cd01860 50 ---VKFEIWDTAGQER-----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNK 115 (163)
T ss_pred ---EEEEEEeCCchHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 3488999999643 444555677899999999999853323333455555443 35789999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+.........+ .+.+.+||++|.|+
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 151 (163)
T cd01860 116 ADLESKRQVSTEEAQEYADENG-------LLFFETSAKTGENV 151 (163)
T ss_pred ccccccCcCCHHHHHHHHHHcC-------CEEEEEECCCCCCH
Confidence 998742211 111112222111 46788999999988
No 119
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.57 E-value=1e-13 Score=125.55 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=96.4
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|.+|+|||||+|+|++.........+..|......... ++. ...+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---------------~~~~~ 48 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE-----------------LGP---------------LGPVV 48 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEE-----------------ecC---------------CCcEE
Confidence 5899999999999999998754222222222222111100 000 14699
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
++||||+....... .........++..+|++++|+|+.. ........+.......+.|+++|+||+|+.......
T Consensus 49 ~~Dt~g~~~~~~~~----~~~~~~~~~~~~~~d~il~v~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~ 123 (163)
T cd00880 49 LIDTPGIDEAGGLG----REREELARRVLERADLILFVVDADL-RADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE 123 (163)
T ss_pred EEECCCCCccccch----hhHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH
Confidence 99999998743221 0112455667899999999999996 455554444556666789999999999999865543
Q ss_pred HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 221 RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... ..... ...+..+++.+||..+.++
T Consensus 124 ~~~~~-~~~~~--~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 124 ELLEL-RLLIL--LLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred HHHHH-HHhhc--ccccCCceEEEeeeccCCH
Confidence 32110 00011 1344567889999988876
No 120
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.57 E-value=2.8e-14 Score=132.21 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=89.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+++|++..+. ...+.+....+...... .+.. .
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~----------------~~~~--------------~ 50 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIE----------------VNGQ--------------K 50 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEE----------------ECCE--------------E
Confidence 57999999999999999999988752 22221111222110000 0000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+. ..+.|+++|.||+|+
T Consensus 51 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 51 IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 2478999999753 45556677899999999999986222222234444333 245789999999999
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....... +........ ...+.+.+||++|.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 120 EAQRDVTYEEAKQFADE-------NGLLFLECSAKTGENV 152 (166)
T ss_pred ccccCcCHHHHHHHHHH-------cCCEEEEEECCCCCCH
Confidence 7543221 111111111 1236788999999998
No 121
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.56 E-value=4.7e-14 Score=130.97 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=86.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+|+|++..+... ..+....+... .+.. ++ . .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------~~----------~-------------~- 48 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTV-------DD----------K-------------L- 48 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEE-------CC----------E-------------E-
Confidence 3799999999999999999999875311 11111111110 0000 00 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----h---CCCCcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----R---GHDDKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~---~~~~~vilVl 208 (551)
..+.++||||... +......+++++|++|+|+|+.+.........+...+ . ..+.|+++|+
T Consensus 49 -~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 49 -VTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred -EEEEEEeCCChHH-----------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 2378999999753 4555667789999999999998521111112222222 1 1268999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+..+... .+......... ...+++.+||.+|.|+
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 117 NKIDLEEKRQVSTKKAQQWCQSN------GNIPYFETSAKEAINV 155 (172)
T ss_pred ECcccccccccCHHHHHHHHHHc------CCceEEEEECCCCCCH
Confidence 99999842211 11122222111 1246788999999988
No 122
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=2.9e-14 Score=135.46 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=88.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||+++|++.++.. ....+|+. .+. .+..+. .
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~------------------~------------- 48 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN--GNFIATVGIDFRNKVVTVDG------------------V------------- 48 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--cCcCCcccceeEEEEEEECC------------------E-------------
Confidence 69999999999999999999887521 11122221 111 111100 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
...+.||||||... +......++..+|++++|+|+.+.........++..+.+ .+.|+++|+||+
T Consensus 49 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 49 -KVKLQIWDTAGQER-----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred -EEEEEEEeCCCcHH-----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 02488999999643 455556678899999999999852222222344444442 367999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....... .......... ..+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~-------~~~~~e~Sa~~~~~v 151 (191)
T cd04112 117 DMSGERVVKREDGERLAKEY-------GVPFMETSAKTGLNV 151 (191)
T ss_pred cchhccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 996432211 1111111111 236788999999887
No 123
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.56 E-value=4.7e-14 Score=129.72 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=89.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. ...+..+.+.... +..+ +. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~---------------~ 48 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVG-----------------GK---------------R 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEEC-----------------CE---------------E
Confidence 69999999999999999999887531 1111111111111 0000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|+
T Consensus 49 ~~l~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 117 (161)
T cd04113 49 VKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred EEEEEEECcchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 3488999999753 45556677899999999999986222222234444333 357899999999999
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....... +......... ..+.+.+||+++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 150 (161)
T cd04113 118 ADQREVTFLEASRFAQEN-------GLLFLETSALTGENV 150 (161)
T ss_pred chhccCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 7533211 1111111111 146889999999988
No 124
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.56 E-value=5.2e-14 Score=134.77 Aligned_cols=144 Identities=20% Similarity=0.283 Sum_probs=91.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.|+++|..|||||||+++++...+. ....+|.. .+. .+..+ |.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~---~~~~~Ti~~~~~~~~i~~~-----------------~~-------------- 47 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC---EACKSGVGVDFKIKTVELR-----------------GK-------------- 47 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC---CcCCCcceeEEEEEEEEEC-----------------CE--------------
Confidence 5899999999999999999987752 12222321 111 11110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
...+.+|||+|... +......++.++|++++|+|.++.........++..+.. .+.|+++|.||+
T Consensus 48 -~v~l~iwDtaGqe~-----------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 48 -KIRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred -EEEEEEEeCCCchh-----------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 03488999999864 566677788999999999999863322233445554442 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....++.......+.. .......+.+||++|.|+
T Consensus 116 DL~~~~~v~~~~~~~~a~-----~~~~~~~~etSAktg~gV 151 (202)
T cd04120 116 DCETDREISRQQGEKFAQ-----QITGMRFCEASAKDNFNV 151 (202)
T ss_pred ccccccccCHHHHHHHHH-----hcCCCEEEEecCCCCCCH
Confidence 997543322211111111 011235678999999998
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=4.9e-14 Score=135.05 Aligned_cols=145 Identities=16% Similarity=0.198 Sum_probs=89.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E--EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+++|++..+. ....||... + ..+.... +.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~---~~~~~t~~~d~~~~~v~~~~----------------~~------------- 48 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS---QHYKATIGVDFALKVIEWDP----------------NT------------- 48 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeEEEEEEEEEECC----------------CC-------------
Confidence 37999999999999999999987652 222333221 1 1111110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vil 206 (551)
...+.+|||||... +......++.++|++++|+|.++.........+...+. ..+.|+++
T Consensus 49 --~~~l~l~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 49 --VVRLQLWDIAGQER-----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred --EEEEEEEECCCchh-----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 03478999999853 45556778899999999999985222222233333332 24679999
Q ss_pred EEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+.... .+.........+ ..+.+.+||++|.|+
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~e~Sak~~~~v 156 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCKENG------FIGWFETSAKEGINI 156 (201)
T ss_pred EEECCCcccccccCHHHHHHHHHHcC------CceEEEEeCCCCCCH
Confidence 9999999732111 111122221111 235788999999988
No 126
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.56 E-value=4.4e-14 Score=142.62 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=97.7
Q ss_pred HHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISD-EFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|++++|+|+.++.++. ....++..+...++|+++|+||+|+.+..+.. .+...... ...+++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~-~~~~~~~~-------~g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEE-LELVEALA-------LGYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHH-HHHHHHHh-------CCCeEEEEEC
Confidence 468999999999998633232 33456666667789999999999998753321 11111111 2347889999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
+++.++ ++|...+ .+.+++++|.+|+||||++|.|
T Consensus 147 ~~g~gi-------------~~L~~~L--------------------------------~~k~~~~~G~sg~GKSTlin~l 181 (287)
T cd01854 147 KTGEGL-------------DELREYL--------------------------------KGKTSVLVGQSGVGKSTLINAL 181 (287)
T ss_pred CCCccH-------------HHHHhhh--------------------------------ccceEEEECCCCCCHHHHHHHH
Confidence 988876 4444433 1247999999999999999999
Q ss_pred HhCCCCc---cc--ccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 327 LERDFPG---IH--IGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 327 ~~~~~~~---~~--v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
++..... +. .+...+||+......-.....++||||+....
T Consensus 182 ~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~ 227 (287)
T cd01854 182 LPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFG 227 (287)
T ss_pred hchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccC
Confidence 9984211 11 12233466654433333356899999997755
No 127
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.55 E-value=3.2e-14 Score=133.50 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=90.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce---EEEEEeCCC-ccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~---~~~i~~~~~-~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+|+++|.+|||||||+|++++..+.. ...+|... ...+.+... .... .+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~----------~~~~---------- 60 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP---KFITTVGIDFREKRVVYNSSGPGGT----------LGRG---------- 60 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCccceEEEEEEEEEcCcccccc----------ccCC----------
Confidence 4789999999999999999999877522 22222211 011111110 0000 0000
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilV 207 (551)
....+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 61 ---~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 61 ---QRIHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLC 126 (180)
T ss_pred ---CEEEEEEEeCCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 003488999999643 556667788999999999999852211222344444432 35789999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..... +......... ..+.+.+||++|.|+
T Consensus 127 ~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~~~~v 165 (180)
T cd04127 127 GNKADLEDQRQVSEEQAKALADKY-------GIPYFETSAATGTNV 165 (180)
T ss_pred EeCccchhcCccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 9999997532211 1111111111 236788999999988
No 128
>PTZ00369 Ras-like protein; Provisional
Probab=99.55 E-value=4.3e-14 Score=134.08 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=89.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||++++++..+. ....||... +.... .++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~---~~~~~t~~~~~~~~~------------------------------~~~~ 50 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI---DEYDPTIEDSYRKQC------------------------------VIDE 50 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCchhhEEEEEE------------------------------EECC
Confidence 4589999999999999999999987752 112223211 11000 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
. ...+.+|||||..+ +......++..+|++++|+|+++.........+...+. ..+.|+++|+|
T Consensus 51 ~-~~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 51 E-TCLLDILDTAGQEE-----------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred E-EEEEEEEeCCCCcc-----------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 0 02478999999865 44455667889999999999986222122234444433 23679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+....... +.... ..+++.+||++|.|+
T Consensus 119 K~Dl~~~~~i~~~~~~~-~~~~~-----~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 119 KCDLDSERQVSTGEGQE-LAKSF-----GIPFLETSAKQRVNV 155 (189)
T ss_pred CcccccccccCHHHHHH-HHHHh-----CCEEEEeeCCCCCCH
Confidence 99986432211111111 11111 236789999999988
No 129
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.55 E-value=6.2e-14 Score=153.36 Aligned_cols=131 Identities=22% Similarity=0.334 Sum_probs=85.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE--EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+.|.|+++|++|+|||||+|+|++..+. ...++.+|..+ ..+....... + .+. ... ...+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~-~----------~~~-~~~---~~~v~ 65 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEG-I----------CGD-LLK---KFKIR 65 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccc-c----------ccc-ccc---ccccc
Confidence 4689999999999999999999998752 22333222211 1110000000 0 000 000 00000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.+ ...+.+|||||+.. |.......+..+|++++|+|+++ +...+..+.+..++..+.|+++|+||+|
T Consensus 66 ~~-~~~l~~iDTpG~e~-----------f~~l~~~~~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~~vpiIVv~NK~D 132 (590)
T TIGR00491 66 LK-IPGLLFIDTPGHEA-----------FTNLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYKTPFVVAANKID 132 (590)
T ss_pred cc-cCcEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCc-CCCHhHHHHHHHHHHcCCCEEEEEECCC
Confidence 00 02489999999864 55556667789999999999986 6777777777777778899999999999
Q ss_pred CCC
Q psy11743 213 MVD 215 (551)
Q Consensus 213 l~~ 215 (551)
+.+
T Consensus 133 l~~ 135 (590)
T TIGR00491 133 RIP 135 (590)
T ss_pred ccc
Confidence 974
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.55 E-value=9.1e-14 Score=127.40 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=88.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|++++..... .. +|... ...+. +. .
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~--~~--~t~~~~~~~~~------------------~~-----~----------- 42 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT--TI--PTIGFNVETVE------------------YK-----N----------- 42 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC--CC--CCcCcceEEEE------------------EC-----C-----------
Confidence 48999999999999999999987321 11 11110 00000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ . ..+.|+++|+||+|
T Consensus 43 ~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 43 VSFTVWDVGGQDK-----------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred EEEEEEECCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccC
Confidence 3489999999764 3445667789999999999998622122222333222 2 34789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+. .. .++.. ......+++.+||++|.|+
T Consensus 112 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 112 LPGALSVSEL-IE---KLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CccccCHHHH-HH---hhChhhccCCcEEEEEeeCCCCCCH
Confidence 9864322111 11 12211 1223457889999999887
No 131
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.55 E-value=7e-14 Score=135.47 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+. ....||...-... ..+.+++...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~---~~~~~T~~~d~~~----------------------------~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG---KSYKQTIGLDFFS----------------------------KRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeEEEEE----------------------------EEEEeCCCCE
Confidence 36999999999999999999987752 2223332211000 0001111001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEEcC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVLNK 210 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........+...+.+ .+.|+++|.||
T Consensus 50 ~~~~i~Dt~G~~~-----------~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 50 VTLQVWDIGGQSI-----------GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 3488999999643 445566778999999999999863222222344454442 23478999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ......... ..+.+.+||++|.++
T Consensus 119 ~DL~~~~~v~~~~~~~~~~~~-------~~~~~~iSAktg~gv 154 (215)
T cd04109 119 TDLEHNRTVKDDKHARFAQAN-------GMESCLVSAKTGDRV 154 (215)
T ss_pred cccccccccCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 99975332211 111111111 135678999999988
No 132
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.55 E-value=7.2e-14 Score=153.76 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=99.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCC--CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIH--IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~--~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|++|+|||||+|+|+|.+..... ..++.|.+.... .+..++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~------------------------------~~~~~~-- 49 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFA------------------------------YFPLPD-- 49 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEE------------------------------EEEeCC--
Confidence 6899999999999999999986521111 111122111100 000111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.+|||||+.. |...+...+.++|++++|+|+.+ +...+..+.+..+...+.| +++|+||+|+.
T Consensus 50 -~~v~~iDtPGhe~-----------f~~~~~~g~~~aD~aILVVDa~~-G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 -YRLGFIDVPGHEK-----------FISNAIAGGGGIDAALLVVDADE-GVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred -EEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 3589999999753 66677778899999999999996 6667777777777777888 99999999998
Q ss_pred CHHHHHH---HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.... .........+. .+..+++++||++|.|+
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~---~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIF---LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCC---CCCCcEEEEeCCCCCCc
Confidence 7654322 22222222221 12457899999999998
No 133
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=1.1e-13 Score=152.90 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=99.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|+.++|||||+|+|+|.+...... ..+.|.+.... ....++.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~------------------------------~~~~~~g- 50 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA------------------------------YWPQPDG- 50 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE------------------------------EEecCCC-
Confidence 68999999999999999999865211111 11222211100 0001111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.+|||||+.. |...+...+..+|++++|+|+.. +...+..+.+..+...+.| +++|+||+|+.
T Consensus 51 -~~i~~IDtPGhe~-----------fi~~m~~g~~~~D~~lLVVda~e-g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 -RVLGFIDVPGHEK-----------FLSNMLAGVGGIDHALLVVACDD-GVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred -cEEEEEECCCHHH-----------HHHHHHHHhhcCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 3489999999853 66677777899999999999996 7888888888888777777 57999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+............+... +....+++.+||++|.|+
T Consensus 118 ~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 118 DEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGI 154 (614)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCC
Confidence 7544332222111111111 223457899999999988
No 134
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=1.8e-13 Score=125.91 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=93.7
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccC
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKG 138 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 138 (551)
|+++|.+|+|||||+|.|++.... ....+.+.++......... ..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~~~~~~~t~~~~~~~~~----------------------------------~~ 46 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGKTQLINFFNVN----------------------------------DK 46 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eeecCCCCcceeEEEEEcc----------------------------------Ce
Confidence 799999999999999999954431 1222222221111110000 24
Q ss_pred eEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 139 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 139 ~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
+.++||||+..... .......+...+..++ +.++++++|+|... ..+.....+..++...+.|+++|+||+|+..
T Consensus 47 ~~~~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 47 FRLVDLPGYGYAKV-SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred EEEecCCCcccccc-CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 89999999876321 1111112333333333 45688999999985 5556666777888877899999999999986
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+...........+.. .....+++++||+.+.++
T Consensus 125 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 125 KSELAKALKEIKKELKL--FEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hHHHHHHHHHHHHHHHh--ccCCCceEEEecCCCCCH
Confidence 55433222222111210 123457789999988776
No 135
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.7e-14 Score=152.34 Aligned_cols=149 Identities=25% Similarity=0.169 Sum_probs=105.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+..+|+++|+||||||||+|+|+|.+. .+..=|+.|-++........ .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~-----------------~-------------- 49 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYK-----------------G-------------- 49 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEec-----------------C--------------
Confidence 346799999999999999999999874 36677777877765533211 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+.+.+||.||..+-... +. -.+.++.++ ..+|+++-|+|++++ +....+.-++.+.++|+++++|++|
T Consensus 50 --~~i~ivDLPG~YSL~~~--S~---DE~Var~~ll~~~~D~ivnVvDAtnL---eRnLyltlQLlE~g~p~ilaLNm~D 119 (653)
T COG0370 50 --HEIEIVDLPGTYSLTAY--SE---DEKVARDFLLEGKPDLIVNVVDATNL---ERNLYLTLQLLELGIPMILALNMID 119 (653)
T ss_pred --ceEEEEeCCCcCCCCCC--Cc---hHHHHHHHHhcCCCCEEEEEcccchH---HHHHHHHHHHHHcCCCeEEEeccHh
Confidence 45999999999874332 21 145666666 578999999999862 3334455566678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+...-....+...+| .|++.+||.+|.|+
T Consensus 120 ~A~~~Gi~ID~~~L~~~LG-------vPVv~tvA~~g~G~ 152 (653)
T COG0370 120 EAKKRGIRIDIEKLSKLLG-------VPVVPTVAKRGEGL 152 (653)
T ss_pred hHHhcCCcccHHHHHHHhC-------CCEEEEEeecCCCH
Confidence 8765322111222222333 48899999999986
No 136
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.55 E-value=1.5e-13 Score=150.74 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=100.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+.|+|+++|+.|+|||||+++|.+.++.. ...++.|.+.... +.+ +
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~-------------------------------~ 132 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVEN-------------------------------E 132 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEE-------------------------------C
Confidence 356999999999999999999999877532 1122223221110 000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+. ..++||||||+.+ |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++++||+|
T Consensus 133 ~~--~~i~~iDTPGhe~-----------F~~~r~rga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~~vPiIVviNKiD 198 (587)
T TIGR00487 133 DG--KMITFLDTPGHEA-----------FTSMRARGAKVTDIVVLVVAADD-GVMPQTIEAISHAKAANVPIIVAINKID 198 (587)
T ss_pred CC--cEEEEEECCCCcc-----------hhhHHHhhhccCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECcc
Confidence 00 2589999999865 45555667889999999999986 6777777777777778899999999999
Q ss_pred CCC--HHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 213 MVD--HQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~--~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.. .+.... .+...+.... ....+++++||++|.|+
T Consensus 199 l~~~~~e~v~~----~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 199 KPEANPDRVKQ----ELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred cccCCHHHHHH----HHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 964 222222 1112222111 11246889999999998
No 137
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=1.4e-13 Score=132.23 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.. +...+...+..+|++++|+|+...+...+..+.+..+...+ .|+++|+||+|+..
T Consensus 83 ~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 5699999999643 66677778889999999999986334444444555554444 46899999999987
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..............+... .....+++++||++|.|+
T Consensus 152 ~~~~~~~~~~i~~~~~~~-~~~~~~i~~vSA~~g~gi 187 (203)
T cd01888 152 EEQALENYEQIKKFVKGT-IAENAPIIPISAQLKYNI 187 (203)
T ss_pred HHHHHHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCCH
Confidence 544322222111111110 122457899999999887
No 138
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.54 E-value=8.7e-14 Score=129.71 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=88.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE---EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~---i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||++++++..+. ....||...... +..+ |.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-----------------~~-------------- 47 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD---KNYKATIGVDFEMERFEIL-----------------GV-------------- 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEEC-----------------CE--------------
Confidence 6899999999999999999998753 222233221111 0000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.+. ..|+++|.||
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK 115 (170)
T cd04108 48 -PFSLQLWDTAGQER-----------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTK 115 (170)
T ss_pred -EEEEEEEeCCChHH-----------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 03489999999754 4555667789999999999997522233334555554322 2458999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+... ......+.... ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~g~~v 153 (170)
T cd04108 116 KDLSSPAQYALMEQDAIKLAAEM-----QAEYWSVSALSGENV 153 (170)
T ss_pred hhcCccccccccHHHHHHHHHHc-----CCeEEEEECCCCCCH
Confidence 99865432110 00011111111 135678999999988
No 139
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.54 E-value=9.8e-14 Score=129.11 Aligned_cols=144 Identities=21% Similarity=0.204 Sum_probs=86.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|.+..+. .+.||...... +.+ . +
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~----~~~~T~~~~~~~~~~------------------~-----~----------- 42 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM----QPIPTIGFNVETVEY------------------K-----N----------- 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC----CcCCcCceeEEEEEE------------------C-----C-----------
Confidence 4899999999999999999987531 23444332111 100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-C---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-G---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+. . .+.|+++|+||+|
T Consensus 43 ~~i~l~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 43 LKFTIWDVGGKHK-----------LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEEEEEECCCChh-----------cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 3489999999854 34455667789999999999985222222233333332 2 2478999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ .... +.+..+......+++.+||++|.|+
T Consensus 112 l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 112 VAGALSVEE-MTEL-LSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred cccCCCHHH-HHHH-hCCccccCCCcEEEEeCcCCCCCCH
Confidence 864311111 1111 1111110111225667899999988
No 140
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.54 E-value=1e-13 Score=129.65 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+++|++..+.. . .||..... .+.. ..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~--~~t~~~~~~~~~~-----------------------~~--------- 58 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--T--SPTIGSNVEEIVY-----------------------KN--------- 58 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--c--CCccccceEEEEE-----------------------CC---------
Confidence 4689999999999999999999876532 1 22221111 1000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-HHHHHhC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-SIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++........+ +...+.. .+.|+++|+||
T Consensus 59 --~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK 125 (174)
T cd04153 59 --IRFLMWDIGGQES-----------LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred --eEEEEEECCCCHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 3589999999853 45555667899999999999985221111122 2233322 35899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ... .++.. ......+++.+||++|.|+
T Consensus 126 ~Dl~~~~~~~~-i~~---~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 126 QDLKGAMTPAE-ISE---SLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred CCCCCCCCHHH-HHH---HhCcccccCCceEEEecccCCCCCH
Confidence 99864211111 111 12210 0112346788999999988
No 141
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.54 E-value=5.8e-14 Score=129.13 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=88.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~~l 136 (551)
+|+++|.+|+|||||+|+|++..+.. ...+|........ .+.++ +...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~---~~~~t~~~~~~~~----------------------------~~~~~~~~~~ 50 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK---DYKKTIGVDFLEK----------------------------QIFLRQSDED 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCcEEEEEEEE----------------------------EEEEcCCCCE
Confidence 69999999999999999999876521 1222221110000 00000 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~ 214 (551)
..+.++||||... +......+++.+|++++|+|+.+.........++..+.. .+.|+++|+||+|+.
T Consensus 51 ~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 51 VRLMLWDTAGQEE-----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEeeCCchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 3589999999643 555667788999999999999852222222344443432 478999999999997
Q ss_pred CHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.. ........+ ..+++.+||+++.++
T Consensus 120 ~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 151 (162)
T cd04106 120 DQAVITNEEAEALAKRL-------QLPLFRTSVKDDFNV 151 (162)
T ss_pred cccCCCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 5432211 111111111 136788999988887
No 142
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.54 E-value=1.1e-13 Score=155.13 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=100.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+.|.|+|+|+.|+|||||+++|.+.++.. ...++.|.+..... + .+.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~----------------v------~~~~-------- 336 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQ----------------V------ETNG-------- 336 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEE----------------E------EECC--------
Confidence 467999999999999999999998876521 11111221111000 0 0001
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..++||||||+.. |.......+..+|++|+|+|+.+ +...+..+.+..+...+.|+++|+||+|+
T Consensus 337 ---~~ItfiDTPGhe~-----------F~~m~~rga~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~~vPiIVviNKiDl 401 (787)
T PRK05306 337 ---GKITFLDTPGHEA-----------FTAMRARGAQVTDIVVLVVAADD-GVMPQTIEAINHAKAAGVPIIVAINKIDK 401 (787)
T ss_pred ---EEEEEEECCCCcc-----------chhHHHhhhhhCCEEEEEEECCC-CCCHhHHHHHHHHHhcCCcEEEEEECccc
Confidence 4589999999865 55556667889999999999986 77777777788887889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
.... ..++. ..+...+.+.. ....+++++||++|.|+
T Consensus 402 ~~a~-~e~V~-~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 402 PGAN-PDRVK-QELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred cccC-HHHHH-HHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 6421 11111 11111222111 11357899999999998
No 143
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.54 E-value=1.3e-13 Score=129.13 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=88.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||+++|....+. . ..||..... .+. +. .
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~--~~~t~~~~~~~~~------------------~~-----~--------- 56 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--T--TIPTIGFNVETVT------------------YK-----N--------- 56 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--C--cCCccccceEEEE------------------EC-----C---------
Confidence 578999999999999999999755531 1 223332111 000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++.++|++++|+|+++........+++..+ .. .+.|+++|+||
T Consensus 57 --~~l~l~D~~G~~~-----------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 57 --ISFTVWDVGGQDK-----------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred --EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 3489999999754 4556667789999999999998532222223333333 22 25799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ +...+ .+...... ...++.+||++|.|+
T Consensus 124 ~Dl~~~~~~~~-i~~~~-~~~~~~~~-~~~~~~~Sa~~g~gv 162 (175)
T smart00177 124 QDLPDAMKAAE-ITEKL-GLHSIRDR-NWYIQPTCATSGDGL 162 (175)
T ss_pred cCcccCCCHHH-HHHHh-CccccCCC-cEEEEEeeCCCCCCH
Confidence 99864311111 11111 11111122 234567999999998
No 144
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=1.1e-13 Score=131.12 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=88.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
++|+++|..|||||||+|+|++..+.. ...+|.. ... .+..+ |.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~------------- 47 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE---STKSTIGVDFKIKTVYIE-----------------NK------------- 47 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeEEEEEEEEEC-----------------CE-------------
Confidence 479999999999999999999887632 1122211 110 11000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. ...|+++|+||
T Consensus 48 --~~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 48 --IIKLQIWDTNGQER-----------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred --EEEEEEEECCCcHH-----------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 02478999999643 455667788999999999999862222222344444432 35789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...........+ .... ..+.+.+||++|.++
T Consensus 115 ~Dl~~~~~v~~~~~~~~-~~~~-----~~~~~evSa~~~~~i 150 (188)
T cd04125 115 SDLVNNKVVDSNIAKSF-CDSL-----NIPFFETSAKQSINV 150 (188)
T ss_pred CCCcccccCCHHHHHHH-HHHc-----CCeEEEEeCCCCCCH
Confidence 99975332211111111 1111 226788999999887
No 145
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.54 E-value=3.4e-14 Score=135.00 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+.. ....+|......... ..+.| . .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~--~~~~~t~~~~~~~~~----~~~~~----------~---------------~ 49 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV--GPYQNTIGAAFVAKR----MVVGE----------R---------------V 49 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC--cCcccceeeEEEEEE----EEECC----------E---------------E
Confidence 379999999999999999999887521 111222211110000 00000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~ 214 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+... +.|+++|+||+|+.
T Consensus 50 ~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 50 VTLGIWDTAGSER-----------YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEECCCchh-----------hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 2377999999754 2334455678999999999998532222224455555533 68999999999986
Q ss_pred CHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... ..........+. .....+++.+||++|.|+
T Consensus 119 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 119 EQDRSLRQVDFHDVQDFA---DEIKAQHFETSSKTGQNV 154 (193)
T ss_pred ccccccCccCHHHHHHHH---HHcCCeEEEEeCCCCCCH
Confidence 43210 000000000110 111245788999999987
No 146
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.54 E-value=1e-13 Score=135.10 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=104.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc------ccCCC---Ccccccc--------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG------SVPFS---PLDKFGK-------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~------~i~g~---~~~~~~~-------- 117 (551)
..|.|+++|+.|+||||++++|+|..+. +.+.+..|.+.+.+.-..... ...+. .|+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~--~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCcc--ccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998743 333444444433332211111 11111 1222211
Q ss_pred ---cccccccceeEEecCCCCccCeEEEeCCCCCCCcccc--cccccchHHHHHHHHh-ccCEEEEEEeCCCCCCChHH-
Q psy11743 118 ---FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR--VDRGYDFTGVLEWFAE-RVDRIILLFDAHKLDISDEF- 190 (551)
Q Consensus 118 ---~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~~~~~~~~~~~-~aD~il~VvDa~~~~~~~~~- 190 (551)
.+..+......+.+.+|....+++|||||+....... ......+.+++..+++ ..+++|+|+|++. ++..++
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC-CCCchhH
Confidence 1223444455666777777899999999997431110 1111235667777887 5569999999985 677766
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 191 RRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 191 ~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.++++.+...++++++|+||+|..++.
T Consensus 182 l~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 182 LKLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 688889988999999999999998753
No 147
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.54 E-value=1.2e-13 Score=132.22 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=90.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE---EEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~---~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..++|+++|.+|||||||+++|++..+. ....||.... ..+..+ |.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~~----------- 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTVEIN-----------------GE----------- 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCccccceeEEEEEEEC-----------------CE-----------
Confidence 3578999999999999999999988752 1222232111 010000 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.. ...|+++|+|
T Consensus 54 ----~~~l~l~D~~G~~~-----------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgN 118 (199)
T cd04110 54 ----RVKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGN 118 (199)
T ss_pred ----EEEEEEEeCCCchh-----------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 02478999999753 445566778899999999999862222222345554443 3578999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..... +......... ..+++.+||++|.|+
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~gi 155 (199)
T cd04110 119 KNDDPERKVVETEDAYKFAGQM-------GISLFETSAKENINV 155 (199)
T ss_pred CcccccccccCHHHHHHHHHHc-------CCEEEEEECCCCcCH
Confidence 99997543221 1111111111 136788999999988
No 148
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.53 E-value=8.2e-14 Score=130.13 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=89.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||++++++..+.. ...||.. .+. .+..+ |. +
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~---~~~~t~~~~~~~~~~~~-----------------~~-------------~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD---YHDPTIEDAYKQQARID-----------------NE-------------P 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC---CcCCcccceEEEEEEEC-----------------CE-------------E
Confidence 579999999999999999999887632 2223322 111 01100 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||
T Consensus 50 --~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 50 --ALLDILDTAGQAE-----------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred --EEEEEEeCCCchh-----------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 2478999999754 45556677889999999999986322222233333333 246899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+.......+ . . ....+.+.+||++|.|+
T Consensus 117 ~Dl~~~~~v~~~~~~~~-a--~---~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 117 VDLESQRQVTTEEGRNL-A--R---EFNCPFFETSAALRHYI 152 (172)
T ss_pred hhhhhcCccCHHHHHHH-H--H---HhCCEEEEEecCCCCCH
Confidence 99864322211111111 1 1 11236788999999988
No 149
>KOG2423|consensus
Probab=99.53 E-value=1.6e-14 Score=143.83 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=108.7
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPE 238 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~ 238 (551)
++..+...+..+|+++.|+||++ +.......+.+++++. .+.+|+|+|||||++.-.... |... +.. ..
T Consensus 203 IW~ELyKViDSSDVvvqVlDARD-PmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~-Wv~~---lSk----ey 273 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARD-PMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAK-WVRH---LSK----EY 273 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccC-CcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHH-HHHH---Hhh----hC
Confidence 56667778899999999999997 6766666777777743 467999999999998643222 2211 222 22
Q ss_pred ceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCC
Q psy11743 239 VARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTG 318 (551)
Q Consensus 239 ~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g 318 (551)
+.+.|.++.++. + +...|+..++++.+ + + ...+.+.|+|+|.||||
T Consensus 274 PTiAfHAsi~ns-f-----------GKgalI~llRQf~k---------------L-h------~dkkqISVGfiGYPNvG 319 (572)
T KOG2423|consen 274 PTIAFHASINNS-F-----------GKGALIQLLRQFAK---------------L-H------SDKKQISVGFIGYPNVG 319 (572)
T ss_pred cceeeehhhcCc-c-----------chhHHHHHHHHHHh---------------h-c------cCccceeeeeecCCCCc
Confidence 234444443221 1 11334444432211 1 1 12356889999999999
Q ss_pred hhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeecCC
Q psy11743 319 KTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 319 Kss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||+||+|..++ .|.|.+.||.|+- ..++. -..+.|||+||++-|.
T Consensus 320 KSSiINTLR~Kk--VCkvAPIpGETKVWQYItL-mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 320 KSSIINTLRKKK--VCKVAPIPGETKVWQYITL-MKRIFLIDCPGVVYPS 366 (572)
T ss_pred hHHHHHHHhhcc--cccccCCCCcchHHHHHHH-HhceeEecCCCccCCC
Confidence 999999999999 5999999999972 22221 2457799999999887
No 150
>COG2262 HflX GTPases [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=139.43 Aligned_cols=148 Identities=22% Similarity=0.291 Sum_probs=99.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCC----CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
..-|.|+++|.+|+|||||+|+|++.... +.+ +-.|||.+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l-------------------------------- 236 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIEL-------------------------------- 236 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEe--------------------------------
Confidence 35699999999999999999999987743 122 22334433321
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRI 206 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vil 206 (551)
++. +.+.+-||-|+.+.-...+-. -.+.+......||+++.|+|++++..........+.|.+ ..+|+++
T Consensus 237 --~~g--~~vlLtDTVGFI~~LP~~LV~---AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~ 309 (411)
T COG2262 237 --GDG--RKVLLTDTVGFIRDLPHPLVE---AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIIL 309 (411)
T ss_pred --CCC--ceEEEecCccCcccCChHHHH---HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 110 569999999998754433222 234455567889999999999985544444444444443 5689999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|++.+..... ..+ . ..| ..+++||++|.|+
T Consensus 310 v~NKiD~~~~~~~~~----~~~---~--~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 310 VLNKIDLLEDEEILA----ELE---R--GSP--NPVFISAKTGEGL 344 (411)
T ss_pred EEecccccCchhhhh----hhh---h--cCC--CeEEEEeccCcCH
Confidence 999999997654211 111 1 112 5789999999987
No 151
>PRK00089 era GTPase Era; Reviewed
Probab=99.53 E-value=1.3e-14 Score=147.26 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=116.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|.||+||||++|+|+|..+ +.+++.|+||+... ...++.++.++||||+..+. ..++..+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~------~~l~~~~~~ 76 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK------RALNRAMNK 76 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch------hHHHHHHHH
Confidence 45799999999999999999999984 67899999997433 23356789999999998754 222233334
Q ss_pred hhhhhccccCccc-------c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 383 RFQCSLVNSPVLK-------G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
.+..++..+|+.. + .......++.++|+||+|+... . . ......+.+.
T Consensus 77 ~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~---------~--~----~l~~~~~~l~- 140 (292)
T PRK00089 77 AAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD---------K--E----ELLPLLEELS- 140 (292)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC---------H--H----HHHHHHHHHH-
Confidence 4444555555321 0 1111234566788888887200 0 0 0000111110
Q ss_pred ccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCC
Q psy11743 447 DMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFT 526 (551)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 526 (551)
....+.+..+++++.+.+.+.|.+.+....++.+ .+++.+.+ +|.+
T Consensus 141 ------------------------~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~----~~y~~~~~------td~~ 186 (292)
T PRK00089 141 ------------------------ELMDFAEIVPISALKGDNVDELLDVIAKYLPEGP----PYYPEDQI------TDRP 186 (292)
T ss_pred ------------------------hhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC----CCCCCCCC------CCCC
Confidence 0011123344555555555554444333333333 57777777 9999
Q ss_pred CCCccchHHHHHHHHHhHhhhhhc
Q psy11743 527 KFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.++.+.|.+||++...+.+|+|.-
T Consensus 187 ~r~~~~EiiRe~~~~~l~~e~p~~ 210 (292)
T PRK00089 187 ERFLAAEIIREKLLRLLGDELPYS 210 (292)
T ss_pred HHHHHHHHHHHHHHhhCCccCCce
Confidence 999999999999999999999973
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.53 E-value=1.6e-13 Score=129.95 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|++|||||||+|+|.+..+.. ..||.... ..+..+ +
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~----~~~T~~~~~~~i~~~-----------------------~-------- 62 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ----HVPTLHPTSEELTIG-----------------------N-------- 62 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccCcceEEEEEC-----------------------C--------
Confidence 45889999999999999999999876522 12222111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+..........+..+. ..+.|+++|+|
T Consensus 63 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 63 ---IKFKTFDLGGHEQ-----------ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 3478999999653 34455667899999999999985221122223333222 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccccc----------CCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVL----------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+. ..... .....+.+.+||++|.|+
T Consensus 129 K~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 129 KIDLPGAVSEEE-LRQALG-LYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred CCCCCCCcCHHH-HHHHhC-cccccccccccccccCceeEEEEEeEecCCCCh
Confidence 999864211111 112111 10000 011235788999999988
No 153
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=5.7e-14 Score=130.28 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=86.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+|+|++..+. ....+|.. ....... ++ +..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~------~~----------~~~-------------- 47 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTVFDNYSATVT------VD----------GKQ-------------- 47 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeEEEEE------EC----------CEE--------------
Confidence 37999999999999999999998752 11112211 1111000 00 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~--~~~~vilVlNK~D 212 (551)
..+.++||||.... .......+..+|++++|+|+.+. .+......++..+.. .+.|+++|+||+|
T Consensus 48 -~~l~~~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (171)
T cd00157 48 -VNLGLWDTAGQEEY-----------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID 115 (171)
T ss_pred -EEEEEEeCCCcccc-----------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence 34889999998741 11222345789999999999851 111222334444443 3599999999999
Q ss_pred CCCHHHHHHH--------HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRV--------YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~--------~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+....... .......... .....+.+.+||++|.|+
T Consensus 116 l~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi 161 (171)
T cd00157 116 LRDDENTLKKLEKGKEPITPEEGEKLAK--EIGAIGYMECSALTQEGV 161 (171)
T ss_pred hhhchhhhhhcccCCCccCHHHHHHHHH--HhCCeEEEEeecCCCCCH
Confidence 9865432100 0000001111 122236789999999987
No 154
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.53 E-value=1.4e-13 Score=126.12 Aligned_cols=144 Identities=22% Similarity=0.275 Sum_probs=87.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|+|||||+|+|++..+.. ...+++ .......... .+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~--------------- 48 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE---KHESTTQASFFQKTVNI---------------GGKR--------------- 48 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CcCCccceeEEEEEEEE---------------CCEE---------------
Confidence 69999999999999999999887532 111222 2211100000 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|+
T Consensus 49 ~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 49 IDLAIWDTAGQER-----------YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEEECCchHH-----------HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 2488999999643 34455566789999999999986222222233333333 236899999999999
Q ss_pred CCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... .+......... ..+.+.+|++++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~gi 150 (162)
T cd04123 118 ERQRVVSKSEAEEYAKSV-------GAKHFETSAKTGKGI 150 (162)
T ss_pred ccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 753221 11111222111 235688999999987
No 155
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=3.4e-13 Score=142.35 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=99.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++.... .+. .+.....++....+..-.|...+. .....+.+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~--~~~~~~~~~d~~~~E~~rg~T~~~------------~~~~~~~~ 73 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAE---RGL--NQAKDYDSIDAAPEEKERGITINT------------AHVEYETE 73 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhh---hcc--ccccchhhhcCCHHHHhcCccEEE------------EeeEecCC
Confidence 3468999999999999999999974210 000 000000000000000001111110 00000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
-..+.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...++| +++|+||+|+
T Consensus 74 -~~~i~~iDtPGh~~-----------f~~~~~~~~~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 -KRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred -CcEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 14689999999753 66667777789999999999986 7888888888888888888 6788999999
Q ss_pred CCHHHHHHHH----HHHHHHcccccCCCCceEEEecccCCC
Q psy11743 214 VDHQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 214 ~~~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.+.++..+.+ ...+...+. .....+++++||++|.
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~--~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDF--PGDDIPVIRGSALKAL 179 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCC--CcCCccEEEeeccccc
Confidence 8654433322 222222222 1224689999999874
No 156
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.52 E-value=1.6e-13 Score=127.39 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=87.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE--EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||++++++..+.. ...+|... +. .+... +.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~------------ 52 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDT---QLFHTIGVEFLNKDLEVD-----------------GH------------ 52 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCc---CcCCceeeEEEEEEEEEC-----------------Ce------------
Confidence 4789999999999999999999877532 11122111 10 00000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIR 205 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vi 205 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+. ..+.|++
T Consensus 53 ---~~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii 118 (170)
T cd04116 53 ---FVTLQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 118 (170)
T ss_pred ---EEEEEEEeCCChHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE
Confidence 02478999999753 45556667899999999999885221122223333222 1357999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.......+.........+ ..+.+.+||++|.++
T Consensus 119 lv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v 159 (170)
T cd04116 119 VLGNKNDIPERQVSTEEAQAWCRENG------DYPYFETSAKDATNV 159 (170)
T ss_pred EEEECccccccccCHHHHHHHHHHCC------CCeEEEEECCCCCCH
Confidence 99999998642211111222222221 236788999999887
No 157
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.52 E-value=7.4e-14 Score=156.04 Aligned_cols=173 Identities=20% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCccceEEE--EEeCCCccccCCCCcccccccccccc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFL 123 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~ 123 (551)
..+|+++|++|+|||||+|+|+...-.+... ..+.|++.+.. ++....+..-.|..++. .++.-.+
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~--~~~~~~~ 101 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDV--AYRYFAT 101 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCcee--eeeEEcc
Confidence 4679999999999999999999876543311 34445555442 22211111111211110 0111111
Q ss_pred cceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-C
Q psy11743 124 NRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-D 202 (551)
Q Consensus 124 ~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~ 202 (551)
.+ .++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+ +
T Consensus 102 ~~-----------~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~~t~e~~~~~~~~~~~ 158 (632)
T PRK05506 102 PK-----------RKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARK-GVLTQTRRHSFIASLLGIR 158 (632)
T ss_pred CC-----------ceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CccccCHHHHHHHHHhCCC
Confidence 11 5689999999753 45555567899999999999985 66666656666555555 5
Q ss_pred cEEEEEcCCCCCC-HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 203 KIRIVLNKADMVD-HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 203 ~vilVlNK~Dl~~-~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
++++|+||+|+.+ .++..+.....+..+..-.+....+++++||++|.|+.
T Consensus 159 ~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 159 HVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred eEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 6888999999985 22211112222211111012234578999999999984
No 158
>PLN03118 Rab family protein; Provisional
Probab=99.52 E-value=1.5e-13 Score=132.72 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+++|++..+.. ..+..+.+... .+..+. .
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~-----------------~------------ 60 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGG-----------------K------------ 60 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECC-----------------E------------
Confidence 345799999999999999999999987532 22211111111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HH-HHHHHh----CCCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RR-SIEALR----GHDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~-~l~~l~----~~~~~vil 206 (551)
...+.++||||... +......++..+|++++|+|+.+. -+... .. +...+. ..+.|+++
T Consensus 61 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~~~~~~~~il 125 (211)
T PLN03118 61 ---RLKLTIWDTAGQER-----------FRTLTSSYYRNAQGIILVYDVTRR-ETFTNLSDVWGKEVELYSTNQDCVKML 125 (211)
T ss_pred ---EEEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 02488999999754 455566778999999999999852 11211 11 222222 23578999
Q ss_pred EEcCCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+......... ....... ...+.+.+||+++.++
T Consensus 126 v~NK~Dl~~~~~i~~~~~~~~~~~-------~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 126 VGNKVDRESERDVSREEGMALAKE-------HGCLFLECSAKTRENV 165 (211)
T ss_pred EEECccccccCccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9999999753322111 1111111 1235788999999988
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.52 E-value=1.7e-13 Score=127.00 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=86.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.|+++|.+|||||||+++|++..+. ....||.... ..+.. + +
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~---~~~~pt~g~~~~~i~~------------------~-----~----------- 43 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL---ESVVPTTGFNSVAIPT------------------Q-----D----------- 43 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc---ccccccCCcceEEEee------------------C-----C-----------
Confidence 3799999999999999999987642 2222332211 11100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||... +......++.++|++++|+|+.+.........++..+. ..+.|+++|.||+|+.
T Consensus 44 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 44 AIMELLEIGGSQN-----------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred eEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 3589999999764 44556678899999999999985221122233334332 2578999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
......+. .... .+..+......+.+.+||++...
T Consensus 113 ~~~~~~~i-~~~~-~~~~~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 113 AARSVQEI-HKEL-ELEPIARGRRWILQGTSLDDDGS 147 (164)
T ss_pred CCCCHHHH-HHHh-CChhhcCCCceEEEEeeecCCCC
Confidence 54322211 1111 11122222234566788887443
No 160
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=1.8e-13 Score=126.76 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=90.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE--EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.++|+++|.+|+|||||+++|++..+. ...++|... +.. +... +.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~~------------ 54 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIK-----------------GE------------ 54 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEEC-----------------CE------------
Confidence 478999999999999999999977642 223333211 100 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlN 209 (551)
. ..+.++||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+|
T Consensus 55 -~--~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~N 120 (169)
T cd04114 55 -K--IKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGN 120 (169)
T ss_pred -E--EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 0 2378899999753 4555677889999999999998521111222344333 334688999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.......+... ...+.+.+||++|.|+
T Consensus 121 K~D~~~~~~i~~~~~~~~~~~------~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 121 KIDLAERREVSQQRAEEFSDA------QDMYYLETSAKESDNV 157 (169)
T ss_pred CcccccccccCHHHHHHHHHH------cCCeEEEeeCCCCCCH
Confidence 999975443222222222111 1246788999999887
No 161
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=3e-13 Score=127.43 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=88.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|||||||+++|....+. . ..||..... .+.. . .
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~--~~pt~g~~~~~~~~------------------~-----~-------- 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEY------------------K-----N-------- 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--c--ccCCcceeEEEEEE------------------C-----C--------
Confidence 3478999999999999999999876542 1 233322111 0000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.++||||... +......++.++|++++|+|+++..........+..+ .. .+.|+++|+|
T Consensus 61 ---~~~~i~D~~Gq~~-----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 3489999999743 4556667789999999999998522222222233322 22 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccccc-CCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVL-QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~-~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +. ..++... .......+.+||++|.|+
T Consensus 127 K~Dl~~~~~~~~-~~---~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 127 KQDLPNAMNAAE-IT---DKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred CCCCCCCCCHHH-HH---HHhCccccCCCceEEEeccCCCCCCH
Confidence 999865322211 11 1233210 011123456899999998
No 162
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.52 E-value=1.1e-13 Score=127.58 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred EEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+++|.+. .+ .....+|+........ +.++...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~---~~~~~~t~~~~~~~~~----------------------------~~~~~~~ 50 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF---PKNYLMTTGCDFVVKE----------------------------VPVDTDN 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---CccCCCceEEEEEEEE----------------------------EEeCCCC
Confidence 6999999999999999999864 32 1122223211110000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
...+.++||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|+
T Consensus 51 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 51 TVELFIFDSAGQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEEECCCHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 03488999999643 445566778999999999999852222222455555543 35899999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+..++..... ..+.... ..+.+.+||.++.|+
T Consensus 120 ~~~~~~~~~~~-~~~~~~~-----~~~~~~~Sa~~~~gi 152 (164)
T cd04101 120 ADKAEVTDAQA-QAFAQAN-----QLKFFKTSALRGVGY 152 (164)
T ss_pred ccccCCCHHHH-HHHHHHc-----CCeEEEEeCCCCCCh
Confidence 75432211111 1111111 235788999999988
No 163
>PLN03110 Rab GTPase; Provisional
Probab=99.52 E-value=1.4e-13 Score=133.51 Aligned_cols=147 Identities=17% Similarity=0.241 Sum_probs=93.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+...+|+++|.+|||||||+++|++..+.. ...+|.. .+. .+..+ +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~---~~~~t~g~~~~~~~v~~~-----------------~~---------- 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---ESKSTIGVEFATRTLQVE-----------------GK---------- 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeEEEEEEEEEEC-----------------CE----------
Confidence 345799999999999999999999987531 2222211 110 01000 00
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.||||||... +......++..+|++|+|+|+++.........++..+.. .+.|+++|
T Consensus 60 -----~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv 123 (216)
T PLN03110 60 -----TVKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123 (216)
T ss_pred -----EEEEEEEECCCcHH-----------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 02488999999653 555667788999999999999863222233445555443 46899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.............+. . ....+++.+||++|.++
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~l~---~---~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 124 GNKSDLNHLRSVAEEDGQALA---E---KEGLSFLETSALEATNV 162 (216)
T ss_pred EEChhcccccCCCHHHHHHHH---H---HcCCEEEEEeCCCCCCH
Confidence 999998643222111111111 1 12347889999999988
No 164
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.51 E-value=2.5e-13 Score=126.12 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||++++++..+. ....+|.. .+.. +..+. .
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~---------------~---------------- 47 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI---ESYDPTIEDSYRKQVEIDG---------------R---------------- 47 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcchheEEEEEEECC---------------E----------------
Confidence 47999999999999999999987752 12222322 1111 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|.+++|+|..+.........+...+. ..+.|+++|+||
T Consensus 48 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 48 -QCDLEILDTAGTEQ-----------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred -EEEEEEEeCCCccc-----------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 02478999999764 45566677889999999999885222222233333332 347899999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ........ ....+.+.+||+++.++
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 116 ADLEDDRQVSREDGVSLSQQ------WGNVPFYETSARKRTNV 152 (168)
T ss_pred hhccccCccCHHHHHHHHHH------cCCceEEEeeCCCCCCH
Confidence 99975432111 11111111 11246788999999987
No 165
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.51 E-value=2e-13 Score=124.84 Aligned_cols=143 Identities=19% Similarity=0.257 Sum_probs=88.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|++|||||||+|+|++..+ .....+++. ........ +.. .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~~---~----------- 46 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF---VEEYDPTIEDSYRKTIVV-----------------DGE---T----------- 46 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CcCcCCChhHeEEEEEEE-----------------CCE---E-----------
Confidence 489999999999999999998774 222222322 22111110 000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +.......+..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 47 ~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 47 YTLDILDTAGQEE-----------FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEECCChHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 2478999999764 44556677889999999999985222222233333332 24789999999999
Q ss_pred CCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...... .+.........+ .+.+.+||+++.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~S~~~~~~i 149 (160)
T cd00876 116 LENERQVSKEEGKALAKEWG-------CPFIETSAKDNINI 149 (160)
T ss_pred ccccceecHHHHHHHHHHcC-------CcEEEeccCCCCCH
Confidence 9863221 111111111111 46788999998887
No 166
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.51 E-value=2.2e-13 Score=126.50 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=86.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.|+++|.+|||||||+|+|.+... ....||..... .+.. + +
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~----~~~~~t~g~~~~~~~~------------------~-----~----------- 42 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP----KKVAPTVGFTPTKLRL------------------D-----K----------- 42 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC----ccccCcccceEEEEEE------------------C-----C-----------
Confidence 489999999999999999998621 12222321110 1000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.++||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|
T Consensus 43 ~~~~i~D~~G~~~-----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D 111 (167)
T cd04161 43 YEVCIFDLGGGAN-----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111 (167)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence 3488999999753 455567788999999999999863222222344444432 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccC-CC-CceEEEecccCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQ-TP-EVARVYIGSFWDQP 251 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~-~~-~~~~v~iSa~~g~~ 251 (551)
+.......+..... .+..+.. .. ..++..+||++|.+
T Consensus 112 l~~~~~~~~i~~~~--~l~~~~~~~~~~~~~~~~Sa~~g~~ 150 (167)
T cd04161 112 KKNALLGADVIEYL--SLEKLVNENKSLCHIEPCSAIEGLG 150 (167)
T ss_pred CcCCCCHHHHHHhc--CcccccCCCCceEEEEEeEceeCCC
Confidence 87543222221111 1222211 11 23567799998843
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.51 E-value=1.9e-13 Score=126.87 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+++++...+. ....+|... +..+.... .+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~---------------~~~--------------- 47 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLDFHT---------------NRG--------------- 47 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEE---------------CCE---------------
Confidence 37999999999999999999976642 112222211 11110000 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
...+.++||||... +......+...+|++++|+|.++.........++..+.+ .+.|+++|+||+|+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 48 KIRFNVWDTAGQEK-----------FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred EEEEEEEECCCChh-----------hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 03488999999854 122233456789999999999852221222344444442 26999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.......+. ..+. .....+.+.+||++|.|+
T Consensus 117 ~~~~~~~~~--~~~~------~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 117 KDRKVKAKQ--ITFH------RKKNLQYYEISAKSNYNF 147 (166)
T ss_pred ccccCCHHH--HHHH------HHcCCEEEEEeCCCCCCh
Confidence 743211111 1111 112346788999999998
No 168
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.51 E-value=3.2e-13 Score=130.90 Aligned_cols=110 Identities=26% Similarity=0.414 Sum_probs=72.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||+++|++..+.. ..||......... ++ . .
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~----~~~Tig~~~~~~~-----------------~~-----~-----------~ 44 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD----TVSTVGGAFYLKQ-----------------WG-----P-----------Y 44 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC----CCCccceEEEEEE-----------------ee-----E-----------E
Confidence 68999999999999999999988631 2233222111000 00 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl~ 214 (551)
.+.+|||||... +......++..+|++|+|+|+++.........++..+. ..+.|+++|.||+|+.
T Consensus 45 ~l~iwDt~G~e~-----------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 45 NISIWDTAGREQ-----------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEeCCCccc-----------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 488999999754 34455567889999999999986222222222332232 2357899999999997
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 114 ~ 114 (220)
T cd04126 114 E 114 (220)
T ss_pred c
Confidence 5
No 169
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=1.8e-13 Score=132.20 Aligned_cols=147 Identities=16% Similarity=0.270 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+... ..||... +..-. +.+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~---~~~ti~~d~~~~~-----------------------------i~~~~~~ 50 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV---SDPTVGVDFFSRL-----------------------------IEIEPGV 50 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCceeceEEEEEE-----------------------------EEECCCC
Confidence 6899999999999999999999876322 1223211 10000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+. ....|+++|.||+
T Consensus 51 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 51 RIKLQLWDTAGQER-----------FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEEEeCCcchh-----------HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 03488999999753 45556677899999999999986322222234444333 2345688999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+.......+.. . ...+.+.+||++|.++
T Consensus 120 Dl~~~~~v~~~~~~~~~~-----~-~~~~~~e~Sak~g~~v 154 (211)
T cd04111 120 DLESQRQVTREEAEKLAK-----D-LGMKYIETSARTGDNV 154 (211)
T ss_pred ccccccccCHHHHHHHHH-----H-hCCEEEEEeCCCCCCH
Confidence 997532221111111111 1 1146788999999988
No 170
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.50 E-value=2.7e-13 Score=150.75 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=101.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...|.|+|+|+.|+|||||+++|.+..+.. ...++.|.+... .+.+. +. .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~----------------~~------------~ 292 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFE----------------YK------------D 292 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEE----------------ec------------C
Confidence 466899999999999999999999876532 112222322110 00000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.. ..++||||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|
T Consensus 293 ~~--~kItfiDTPGhe~-----------F~~mr~rg~~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~~iPiIVViNKiD 358 (742)
T CHL00189 293 EN--QKIVFLDTPGHEA-----------FSSMRSRGANVTDIAILIIAADD-GVKPQTIEAINYIQAANVPIIVAINKID 358 (742)
T ss_pred Cc--eEEEEEECCcHHH-----------HHHHHHHHHHHCCEEEEEEECcC-CCChhhHHHHHHHHhcCceEEEEEECCC
Confidence 00 4589999999854 66667778899999999999986 6777777777778778899999999999
Q ss_pred CCCHH--HHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 213 MVDHQ--QLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.... .+.+.+. ..+.+.. ....+++++||++|.|+
T Consensus 359 l~~~~~e~v~~eL~----~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 359 KANANTERIKQQLA----KYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred ccccCHHHHHHHHH----HhccchHhhCCCceEEEEECCCCCCH
Confidence 97532 2211111 1111111 11357899999999988
No 171
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.50 E-value=2.6e-13 Score=144.96 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCC----------CCCccceEEEEEeCCCccccCCCCcccccccccccccc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG----------PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNR 125 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~----------~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~ 125 (551)
...|+++|++|+|||||+|+|+...-...... .+..+..+..++....+....|...+. .
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~----------~ 75 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL----------A 75 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee----------e
Confidence 46799999999999999999997653321110 000111111111111111111211110 0
Q ss_pred eeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhCCCC-c
Q psy11743 126 FQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRGHDD-K 203 (551)
Q Consensus 126 ~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~~~~-~ 203 (551)
+..+.. .. ..+.+|||||+.+ |...+...+..+|++++|+|+.+. +...+..+.+..+...+. +
T Consensus 76 ~~~~~~-~~--~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~ 141 (425)
T PRK12317 76 HKKFET-DK--YYFTIVDCPGHRD-----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQ 141 (425)
T ss_pred eEEEec-CC--eEEEEEECCCccc-----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCe
Confidence 000000 01 4689999999754 444455557899999999999841 455555566666655554 5
Q ss_pred EEEEEcCCCCCCH-HH-HH---HHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 204 IRIVLNKADMVDH-QQ-LM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 204 vilVlNK~Dl~~~-~~-~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++|+||+|+... ++ .. +.+...+...+. .....+++++||++|.|+.
T Consensus 142 iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~--~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 142 LIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGY--KPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred EEEEEEccccccccHHHHHHHHHHHHHHHHhhCC--CcCcceEEEeecccCCCcc
Confidence 8999999999752 11 11 122222222222 1123578999999999983
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.50 E-value=4.5e-13 Score=132.32 Aligned_cols=145 Identities=22% Similarity=0.257 Sum_probs=87.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||++++++..+. ....||...+....+. +. |.. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~---~~y~pTi~d~~~k~~~-----i~----------~~~---------------~ 48 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE---EQYTPTIEDFHRKLYS-----IR----------GEV---------------Y 48 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC---CCCCCChhHhEEEEEE-----EC----------CEE---------------E
Confidence 6999999999999999999987753 2223343211110000 00 000 2
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------------CCCcEE
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------------HDDKIR 205 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------------~~~~vi 205 (551)
.+.||||+|... +......++..+|++|+|+|..+.........+.+.+.. .+.|++
T Consensus 49 ~l~I~Dt~G~~~-----------~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI 117 (247)
T cd04143 49 QLDILDTSGNHP-----------FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV 117 (247)
T ss_pred EEEEEECCCChh-----------hhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence 478999999754 333344467899999999999862222222344444421 368999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+....++ .+...... +. ....+.+.+||++|.|+
T Consensus 118 ivgNK~Dl~~~~~v~~~ei~~~~---~~---~~~~~~~evSAktg~gI 159 (247)
T cd04143 118 ICGNKADRDFPREVQRDEVEQLV---GG---DENCAYFEVSAKKNSNL 159 (247)
T ss_pred EEEECccchhccccCHHHHHHHH---Hh---cCCCEEEEEeCCCCCCH
Confidence 99999999742221 11111111 11 12346788999999888
No 173
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.50 E-value=1.6e-13 Score=127.92 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=85.3
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+|.+|||||||++++++..+.. ...+|. +... .+..+ +. .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------~~-~ 45 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE---DYVPTVFENYSADVEVD-------------------------------GK-P 45 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC---CCCCcEEeeeeEEEEEC-------------------------------CE-E
Confidence 5899999999999999999987632 112221 1111 01000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.++||||... +.......+..+|++++|+|.++....... ..++..+.. .+.|+++|.||+|+
T Consensus 46 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQED-----------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcc-----------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 2488999999764 233344567899999999999852111111 234555543 37899999999999
Q ss_pred CCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+.+. .....+.. .....+.+.+||++|.|+
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAK--RIGAVKYLECSALTQEGV 160 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHH--HcCCcEEEEecCCCCCCH
Confidence 75322110000 00000111 111225678999999988
No 174
>KOG0098|consensus
Probab=99.50 E-value=9.9e-14 Score=125.38 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+++.++|.+|||||.|+-+++.+.+..+ ++....+.++.....+++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~-------hd~TiGvefg~r~~~id~k~----------------------- 54 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-------HDLTIGVEFGARMVTIDGKQ----------------------- 54 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccc-------ccceeeeeeceeEEEEcCce-----------------------
Confidence 457899999999999999999999987433 33345555555444444322
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~ 211 (551)
-++.+|||+|+.. |.+.++.+.+.+..+|+|+|..+.........|+..++++ +.-++++.||+
T Consensus 55 --IKlqiwDtaGqe~-----------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKs 121 (216)
T KOG0098|consen 55 --IKLQIWDTAGQES-----------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKS 121 (216)
T ss_pred --EEEEEEecCCcHH-----------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchh
Confidence 2489999999976 8899999999999999999998644444445667666654 45688999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...+++.+.-...|.+.. ......+||+++.++
T Consensus 122 DL~~rR~Vs~EEGeaFA~eh------gLifmETSakt~~~V 156 (216)
T KOG0098|consen 122 DLEARREVSKEEGEAFAREH------GLIFMETSAKTAENV 156 (216)
T ss_pred hhhccccccHHHHHHHHHHc------CceeehhhhhhhhhH
Confidence 99877666544444443221 123346899999888
No 175
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.50 E-value=7.1e-13 Score=126.66 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=75.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|+|..... .+..++ ... .... . ...|. .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~--~~~~~~-~~~-~~t~-------~------~~~~~-------------~~~~ 51 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE--EGAAPT-GVV-ETTM-------K------RTPYP-------------HPKF 51 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC--CCcccc-Ccc-cccc-------C------ceeee-------------cCCC
Confidence 579999999999999999999965421 011011 100 0000 0 00000 0001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+.... ..++.+ ...+..+|++++|.|. .++..+..+++.+.+.++|+++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~----~~~~l~--~~~~~~~d~~l~v~~~---~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFP----PDDYLE--EMKFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCC----HHHHHH--HhCccCcCEEEEEeCC---CCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 45899999999863211 011211 1225678999998553 4678888889988888899999999999964
No 176
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.50 E-value=2.2e-13 Score=132.36 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=68.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC------CCChHHHHHHHHHhCCC-CcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL------DISDEFRRSIEALRGHD-DKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~------~~~~~~~~~l~~l~~~~-~~vilVlN 209 (551)
..+.+|||||+.+ +...+...+..+|++++|+|+... +...+..+.+..+...+ +|+++|+|
T Consensus 77 ~~i~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 77 YRFTILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred eEEEEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 4689999999743 455566677899999999999852 23334444444444444 67889999
Q ss_pred CCCCCC----HHHHHHH---HHHHHHHcccccCCCCceEEEecccCCCCCcc
Q psy11743 210 KADMVD----HQQLMRV---YGALMWSLGKVLQTPEVARVYIGSFWDQPLVH 254 (551)
Q Consensus 210 K~Dl~~----~~~~~~~---~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~ 254 (551)
|+|+.. .....+. +...+...+. .....+++++||++|.|+..
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGY--NPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCC--CcCCceEEEeecCcCCCCCc
Confidence 999983 2222222 2222222222 22246799999999999853
No 177
>PLN03127 Elongation factor Tu; Provisional
Probab=99.49 E-value=4.5e-13 Score=142.90 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=71.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
.++++|||||+.+ |...+...+..+|++++|+|+.. +...++.+.+..+...+.| +++|+||+|+++
T Consensus 124 ~~i~~iDtPGh~~-----------f~~~~~~g~~~aD~allVVda~~-g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 124 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred eEEEEEECCCccc-----------hHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 4689999999864 66666677788999999999986 7888888999999888999 578899999987
Q ss_pred HHHHHHHHHHHHHHc-cccc-CCCCceEEEecccCC
Q psy11743 216 HQQLMRVYGALMWSL-GKVL-QTPEVARVYIGSFWD 249 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l-~~l~-~~~~~~~v~iSa~~g 249 (551)
.++..+.+...+..+ ..+. .....|++++|++.+
T Consensus 192 ~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 192 DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEEecccee
Confidence 544433332222111 1110 112467888888643
No 178
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.49 E-value=9.4e-14 Score=143.48 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..+.+++++|+||||||||+|+|++++ .+.|++.||||| ..++..+|.++.++||+|++. ....+++.|.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d--~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe---t~d~VE~iGI-- 287 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRD--RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE---TDDVVERIGI-- 287 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCC--ceEecCCCCCccceEEEEEEECCEEEEEEecCCccc---CccHHHHHHH--
Confidence 357899999999999999999999999 699999999999 344677999999999999995 5578999998
Q ss_pred HhhhhhhccccCccc-------cccccc--------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 381 LNRFQCSLVNSPVLK-------GKVLQT--------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
.|+..++..+|..+ +.+.+| ...+.++|.||.|+.-+.. ...+ .+.
T Consensus 288 -eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~----------------~~~~--~~~ 348 (454)
T COG0486 288 -ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE----------------LESE--KLA 348 (454)
T ss_pred -HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc----------------cchh--hcc
Confidence 89999999998642 112222 2345589999999932211 0011 122
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
...+.+.+ ++|.+ +.|.+++...+..
T Consensus 349 ~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 349 NGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred CCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 22233333 77777 8888888776643
No 179
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.49 E-value=4.3e-13 Score=127.15 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|||||||++++.+..+.. ...+.++.+-. ..+..+. .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~-----------------~------------- 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDG-----------------R------------- 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECC-----------------E-------------
Confidence 45789999999999999999999865421 11111111110 0111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++|+|+|.++.........|+..+.+ .+.|+++|.||+
T Consensus 54 --~~~l~iwDt~G~~~-----------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~ 120 (189)
T cd04121 54 --RVKLQLWDTSGQGR-----------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRL 120 (189)
T ss_pred --EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 03488999999864 555666778999999999999863333333456665543 368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+. +........ ...+.+.+||++|.|+
T Consensus 121 DL~~~~~v~~~~~~~~a~~-------~~~~~~e~SAk~g~~V 155 (189)
T cd04121 121 HLAFKRQVATEQAQAYAER-------NGMTFFEVSPLCNFNI 155 (189)
T ss_pred cchhccCCCHHHHHHHHHH-------cCCEEEEecCCCCCCH
Confidence 996432211 111111111 1235788999999988
No 180
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=4.8e-13 Score=126.18 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||++++....+. . ..||......... + .+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~--~~~T~~~~~~~~~-----------------~-----~~---------- 60 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--T--TIPTIGFNVETVE-----------------Y-----KN---------- 60 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--c--cCCccccceEEEE-----------------E-----CC----------
Confidence 478999999999999999999766542 1 2233221111000 0 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++|+|+|+++........ .+...+.. ...|+++|+||+
T Consensus 61 -~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~ 128 (182)
T PTZ00133 61 -LKFTMWDVGGQDK-----------LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQ 128 (182)
T ss_pred -EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCC
Confidence 3489999999854 4556677889999999999998522112222 23333332 357899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+ ... .++.- ......+++.+||++|.|+
T Consensus 129 Dl~~~~~~~~-i~~---~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 129 DLPNAMSTTE-VTE---KLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred CCCCCCCHHH-HHH---HhCCCcccCCcEEEEeeeCCCCCCH
Confidence 9864211111 111 12220 0111124556899999998
No 181
>KOG0094|consensus
Probab=99.49 E-value=2.4e-13 Score=123.95 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=102.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+.+|+++|..||||||||+++.-..+ ....++| +.+..-.....+.|.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f---d~~YqAT----IGiDFlskt~~l~d~~---------------------- 70 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF---DNTYQAT----IGIDFLSKTMYLEDRT---------------------- 70 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhh---cccccce----eeeEEEEEEEEEcCcE----------------------
Confidence 3458999999999999999999998765 2333333 2222111111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~vilVlN 209 (551)
-.+.+|||+|.+. |...+..++++++++|+|+|.++.........|++.+++. +.-+++|.|
T Consensus 71 ---vrLQlWDTAGQER-----------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 71 ---VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred ---EEEEEEecccHHH-----------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 3489999999875 7888899999999999999999755555557788777643 234778999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.||.+++++...-.... .. .-.+..+.+||+.|.++
T Consensus 137 KtDL~dkrqvs~eEg~~k---Ak---el~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 137 KTDLSDKRQVSIEEGERK---AK---ELNAEFIETSAKAGENV 173 (221)
T ss_pred cccccchhhhhHHHHHHH---HH---HhCcEEEEecccCCCCH
Confidence 999999876544322211 11 11235567899999998
No 182
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.49 E-value=3.7e-13 Score=125.32 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|+|||||+++|.+...... .+|... ...+... +
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~----~~t~g~~~~~i~~~-----------------------~-------- 57 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI----TPTQGFNIKTVQSD-----------------------G-------- 57 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc----CCCCCcceEEEEEC-----------------------C--------
Confidence 368899999999999999999999764211 122110 0011000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHh---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALR---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~---~~~~~vilVlN 209 (551)
..+.++||||... +......+++.+|++++|+|+.+..........+ ..+. ..+.|+++++|
T Consensus 58 ---~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 58 ---FKLNVWDIGGQRA-----------IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3488999999753 4445566778999999999998521111112222 2222 34689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+. ...+ .+..+ .....+++.+||++|.|+
T Consensus 124 K~D~~~~~~~~~i-~~~l-~~~~~-~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 124 KQDLATAAPAEEI-AEAL-NLHDL-RDRTWHIQACSAKTGEGL 163 (173)
T ss_pred CCCCccCCCHHHH-HHHc-CCccc-CCCeEEEEEeECCCCCCH
Confidence 9999764322221 1111 11111 112235678999999988
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=2e-13 Score=127.12 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
-.+|+++|.+|||||||++++++..+. .....||.. .+. .+.... .
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~~T~~~~~~~~~~~~~~-----------------~------------ 52 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS--LNAYSPTIKPRYAVNTVEVYG-----------------Q------------ 52 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC--cccCCCccCcceEEEEEEECC-----------------e------------
Confidence 468999999999999999999998763 122233332 111 111110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CCCCcEEEEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GHDDKIRIVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~~~~vilVlNK~ 211 (551)
...+.++||+|... +......++.++|++++|+|+++.........++..+. ..+.|+++|+||+
T Consensus 53 ---~~~l~~~d~~g~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~ 118 (169)
T cd01892 53 ---EKYLILREVGEDEV-----------AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKA 118 (169)
T ss_pred ---EEEEEEEecCCccc-----------ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcc
Confidence 02478899998754 22233445689999999999975211111123444332 2368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..... .........++ . ...+.+||+++.++
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~----~--~~~~~~Sa~~~~~v 154 (169)
T cd01892 119 DLDEQQQRYEVQPDEFCRKLG----L--PPPLHFSSKLGDSS 154 (169)
T ss_pred cccccccccccCHHHHHHHcC----C--CCCEEEEeccCccH
Confidence 996533210 00111111122 1 12367999999887
No 184
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.49 E-value=3.3e-13 Score=129.04 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=86.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||+++|++..+. ....+|...+....+. ++.. -.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~---~~~~~t~~~~~~~~~~----------------~~~~--------------~~ 47 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE---PKYRRTVEEMHRKEYE----------------VGGV--------------SL 47 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC---ccCCCchhhheeEEEE----------------ECCE--------------EE
Confidence 4899999999999999999988752 1122232211110000 0000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl 213 (551)
.+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|+
T Consensus 48 ~l~i~D~~G~~~-----------~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 48 TLDILDTSGSYS-----------FPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEECCCchh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 478999999764 34445567789999999999985211122223333322 357899999999999
Q ss_pred CCH-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDH-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
... ..+........... ....+++.+||++|.|+
T Consensus 117 ~~~~~~v~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 117 LEEERQVPAKDALSTVEL-----DWNCGFVETSAKDNENV 151 (198)
T ss_pred ccccccccHHHHHHHHHh-----hcCCcEEEecCCCCCCH
Confidence 753 21111000001000 11235778999999998
No 185
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.49 E-value=3.4e-13 Score=124.39 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||++++++..+. ..+.||......... +.+++ ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~----------------------------~~~~~-~~~ 49 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSHISTIGVDFKMKT----------------------------IEVDG-IKV 49 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEE----------------------------EEECC-EEE
Confidence 6999999999999999999988763 222333221110000 00000 002
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl~ 214 (551)
.+.++||||... +......+...+|++++|+|..+.........++..+.. .+.|+++|.||+|+.
T Consensus 50 ~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 50 RIQIWDTAGQER-----------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEeCCCcHh-----------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 478999999653 444556677899999999999853222222344444332 357899999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.......+.. .. + .+.+.+||++|.++
T Consensus 119 ~~~~v~~~~~~~~~~-~~--~---~~~~e~Sa~~~~~v 150 (161)
T cd04117 119 QKRQVGDEQGNKLAK-EY--G---MDFFETSACTNSNI 150 (161)
T ss_pred cccCCCHHHHHHHHH-Hc--C---CEEEEEeCCCCCCH
Confidence 543221111111111 11 1 35688999999887
No 186
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.49 E-value=3.8e-13 Score=134.40 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=95.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|++|+|||||+|+|+...-.. ...+...+..+...+... ....|..++. ......|.+ .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~--~~~g~v~~~~~~~D~~~~-E~~rgiti~~--~~~~~~~~~-----------~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRI--HKIGEVHGGGATMDFMEQ-ERERGITIQS--AATTCFWKD-----------H 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCC--cccccccCCccccCCCcc-ccCCCcCeec--cEEEEEECC-----------E
Confidence 38999999999999999998643110 011111111111111110 0011111100 000001111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
++.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...++|+++++||+|+....
T Consensus 65 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 65 RINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 689999999864 56677888999999999999996 778888888888888899999999999997421
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
..+........++. .+.+..+++|+..+
T Consensus 133 -~~~~~~~l~~~l~~---~~~~~~~Pisa~~~ 160 (270)
T cd01886 133 -FFRVVEQIREKLGA---NPVPLQLPIGEEDD 160 (270)
T ss_pred -HHHHHHHHHHHhCC---CceEEEeccccCCC
Confidence 11112222222332 24455678888543
No 187
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.49 E-value=2.7e-13 Score=126.16 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+. ....+|... +..- .+.+++.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~-----------------------------~~~~~~~- 49 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP---ERTEATIGVDFRER-----------------------------TVEIDGE- 49 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CccccceeEEEEEE-----------------------------EEEECCe-
Confidence 57999999999999999999987652 112222110 0000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||... +. .....++.++|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 50 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 50 RIKVQLWDTAGQER-----------FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEEeCCChHH-----------HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 03488999999753 33 2455667899999999999863222233445544432 35899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
+|+....++.......+.. ....+.+.+||+++.
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 119 CDLREQIQVPTDLAQRFAD------AHSMPLFETSAKDPS 152 (170)
T ss_pred ccchhhcCCCHHHHHHHHH------HcCCcEEEEeccCCc
Confidence 9986543221111111111 112356789999843
No 188
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.49 E-value=6.8e-13 Score=125.13 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=87.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|..|||||||++++++..+. ....||..... .+..+. .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~---~~~~~T~g~~~~~~~i~~~~-----------------~------------- 47 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD---EDYIQTLGVNFMEKTISIRG-----------------T------------- 47 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEECC-----------------E-------------
Confidence 36999999999999999999988753 22333432111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||+|... +......++..+|++++|+|+++.........++..+.+ ...| ++|+||
T Consensus 48 --~~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 48 --EITFSIWDLGGQRE-----------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred --EEEEEEEeCCCchh-----------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 03488999999764 444555678999999999999863222222345555543 2344 789999
Q ss_pred CCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+... ++... .......+.. .. ..+.+.+||++|.|+
T Consensus 114 ~Dl~~~~~~~~~~~-~~~~~~~~a~--~~-~~~~~e~SAk~g~~v 154 (182)
T cd04128 114 YDLFADLPPEEQEE-ITKQARKYAK--AM-KAPLIFCSTSHSINV 154 (182)
T ss_pred hhccccccchhhhh-hHHHHHHHHH--Hc-CCEEEEEeCCCCCCH
Confidence 999631 11100 1111111111 11 246789999999988
No 189
>PLN03108 Rab family protein; Provisional
Probab=99.49 E-value=3.4e-13 Score=130.17 Aligned_cols=146 Identities=15% Similarity=0.210 Sum_probs=88.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+|+|.+|+|||||+|+|++..+.... .+....+... .+... +. +
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~-----------------~~-------------~ 54 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITID-----------------NK-------------P 54 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEEC-----------------CE-------------E
Confidence 478999999999999999999988753211 1111111100 00000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ....|+++|+||+
T Consensus 55 --i~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~ 121 (210)
T PLN03108 55 --IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (210)
T ss_pred --EEEEEEeCCCcHH-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 2378999999753 44455667789999999999986322222234444333 2368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....... +......... ..+.+.+||+++.++
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 122 DLAHRRAVSTEEGEQFAKEH-------GLIFMEASAKTAQNV 156 (210)
T ss_pred cCccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 997532211 1111111111 236788999999988
No 190
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=3.5e-13 Score=119.78 Aligned_cols=131 Identities=23% Similarity=0.238 Sum_probs=86.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|++||+.++|||||+++|.|.+... .-| ..+.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KT----q~i~~~------------------------------------ 37 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKT----QAIEYY------------------------------------ 37 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----Ccc----ceeEec------------------------------------
Confidence 69999999999999999999987421 011 111111
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC-CH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV-DH 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~-~~ 216 (551)
=.+|||||-.-... .+...+......||+|++|.|+.. +.......+... ..+|+|-|+||+|+. ++
T Consensus 38 -~~~IDTPGEyiE~~-------~~y~aLi~ta~dad~V~ll~dat~-~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 38 -DNTIDTPGEYIENP-------RFYHALIVTAQDADVVLLLQDATE-PRSVFPPGFASM---FNKPVIGVITKIDLPSDD 105 (143)
T ss_pred -ccEEECChhheeCH-------HHHHHHHHHHhhCCEEEEEecCCC-CCccCCchhhcc---cCCCEEEEEECccCccch
Confidence 13599999543111 266777777889999999999996 322222233433 358999999999999 33
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.+. ...+...|. ..++.+|+.+|.|+
T Consensus 106 ~~i~~a-~~~L~~aG~------~~if~vS~~~~eGi 134 (143)
T PF10662_consen 106 ANIERA-KKWLKNAGV------KEIFEVSAVTGEGI 134 (143)
T ss_pred hhHHHH-HHHHHHcCC------CCeEEEECCCCcCH
Confidence 343332 223322222 24588999999998
No 191
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.48 E-value=7.5e-13 Score=125.08 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=86.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|+|||||+++|++..+. ....||.. .+. .+... +.-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~~i~~~-------------------------------~~~ 47 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP---EEYVPTVFENYVTNIQGP-------------------------------NGK 47 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC---CCCCCeeeeeeEEEEEec-------------------------------CCc
Confidence 7999999999999999999998753 12222221 111 11110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|.++ ..+.+. ..++..+. ..+.|+++|+||+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEE-----------YDRLRPLSYPDVDVLLICYAVDN-PTSLDNVEDKWFPEVNHFCPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchh-----------HHHHHHHhCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCh
Confidence 02488999999753 44445556789999999999985 222222 12443333 2468999999999
Q ss_pred CCCCHHH----HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ----LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~----~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+... +.......+. . .....+.+.+||++|.++
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~-~----~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 116 DLRKDKNLDRKVTPAQAESVA-K----KQGAFAYLECSAKTMENV 155 (187)
T ss_pred hhhhCccccCCcCHHHHHHHH-H----HcCCcEEEEccCCCCCCH
Confidence 9865321 0000111111 1 111225688999999988
No 192
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.48 E-value=1.3e-12 Score=137.98 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=97.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++... ..+. .+.+...++....+..-.|...+ ...+..+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~--~~~~~~~~~d~~~~E~~rG~Ti~------------~~~~~~~~~ 73 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLA---KEGG--AAARAYDQIDNAPEEKARGITIN------------TAHVEYETE 73 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhc--ccccccccccCCHHHHhcCccee------------eEEEEEcCC
Confidence 457899999999999999999986411 0000 00000000000000000111111 000001000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl 213 (551)
-..+.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|.+ +|+||+|+
T Consensus 74 -~~~~~liDtpGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 -NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred -CEEEEEEECCchHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 14589999999864 56666677789999999999996 777888888888887888866 68999999
Q ss_pred CCHHHHHHHH----HHHHHHcccccCCCCceEEEecccCCC
Q psy11743 214 VDHQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 214 ~~~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.+.++..+.. ...+...+. .....+++++||+++.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDF--PGDDTPIIRGSALKAL 179 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC--CccCccEEECcccccc
Confidence 8755433222 222222222 1122688999999875
No 193
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.48 E-value=5.8e-13 Score=129.38 Aligned_cols=147 Identities=20% Similarity=0.159 Sum_probs=90.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+++|..|||||||+++++...+. ....||.... ...... .+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~---~~~~~tig~~~~~~~~~-----------------------------~~ 58 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFF-----------------------------TN 58 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC---CccCCccceeEEEEEEE-----------------------------EC
Confidence 56689999999999999999999877642 2222332211 100000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK 210 (551)
.. ...+.+|||||... +......+...+|++|+|+|.++.........|+..+. ..+.|+++|+||
T Consensus 59 ~~-~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK 126 (219)
T PLN03071 59 CG-KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (219)
T ss_pred Ce-EEEEEEEECCCchh-----------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 00 03488999999864 34444556789999999999986222222234555444 246899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+.. . +.. ....+.+.+||++|.|+
T Consensus 127 ~Dl~~~~v~~~~~-~-~~~------~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 127 VDVKNRQVKAKQV-T-FHR------KKNLQYYEISAKSNYNF 160 (219)
T ss_pred hhhhhccCCHHHH-H-HHH------hcCCEEEEcCCCCCCCH
Confidence 9986421111111 1 111 11235678999999988
No 194
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=6.6e-13 Score=131.23 Aligned_cols=150 Identities=18% Similarity=0.134 Sum_probs=103.4
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEe
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
..+.+.|-+++|+.+..++++... .+++-.+...+...++|+||+|+++.++... .+......+ ..+++++
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-------gy~v~~~ 147 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-------GYPVLFV 147 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC-------CeeEEEe
Confidence 344568888888888876776654 4555566677899999999999998765442 223333223 3478899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
|++++.++ ++|...+ .+-+.+++|++|||||||+|
T Consensus 148 s~~~~~~~-------------~~l~~~l--------------------------------~~~~svl~GqSGVGKSSLiN 182 (301)
T COG1162 148 SAKNGDGL-------------EELAELL--------------------------------AGKITVLLGQSGVGKSTLIN 182 (301)
T ss_pred cCcCcccH-------------HHHHHHh--------------------------------cCCeEEEECCCCCcHHHHHH
Confidence 99887776 3443333 23478999999999999999
Q ss_pred HHHhCC-CCcccccCC----CcccceEEEEecCCCccccCCceeecCCC
Q psy11743 325 YLLERD-FPGIHIGPE----PTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 325 ~l~~~~-~~~~~v~~~----~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
+|.+.. ..--.||.. -.||++.....-+....++||||+...+.
T Consensus 183 ~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 183 ALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGL 231 (301)
T ss_pred hhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCc
Confidence 999863 111122222 34666666555567788999999998775
No 195
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.48 E-value=3.4e-13 Score=126.55 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+++|++..+. ....||+. .++....- .+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~---~~~~~t~~~~~~~~~~~----------------~~~~-------------- 48 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV---ESYYPTIENTFSKIIRY----------------KGQD-------------- 48 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---cccCcchhhhEEEEEEE----------------CCEE--------------
Confidence 47999999999999999999987752 22222321 11111000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~ 211 (551)
..+.+|||||..+ +......+...+|++++|+|..+.........+...+ ...+.|+++|+||+
T Consensus 49 -~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 116 (180)
T cd04137 49 -YHLEIVDTAGQDE-----------YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKS 116 (180)
T ss_pred -EEEEEEECCChHh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEch
Confidence 2378999999764 3444556778999999999998522111222332322 23467999999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...+.... ........ ...+++.+||+++.++
T Consensus 117 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv 151 (180)
T cd04137 117 DLHTQRQVSTEEGKELAES-------WGAAFLESSARENENV 151 (180)
T ss_pred hhhhcCccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 9874322111 11111111 1236788999998887
No 196
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.48 E-value=8.2e-13 Score=128.03 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=57.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+.
T Consensus 73 ~~i~iiDTPG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHVD-----------FSSEVTAALRLCDGALVVVDAVE-GVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCccc-----------cHHHHHHHHHhcCeeEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 4588999999975 67788888999999999999996 788888788887777788999999999986
No 197
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.47 E-value=2.9e-13 Score=126.83 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=89.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+. ....||......... ..+.. +
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~---~~~~pt~~~~~~~~~----------------~~~~~------------~-- 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAVTV----------------MIGGE------------P-- 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeEEEE----------------EECCE------------E--
Confidence 47999999999999999999987752 223344321111000 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK~D 212 (551)
..+.+|||||... +......++..+|++++|+|..+ .-+... . .|+..+.. .+.|+++|.||+|
T Consensus 49 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~d~~~-~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (175)
T cd01874 49 YTLGLFDTAGQED-----------YDRLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKWVPEITHHCPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEEECCCccc-----------hhhhhhhhcccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 2478999999864 33344456789999999999986 222222 2 35555543 3689999999999
Q ss_pred CCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+....+..+.... ....+.. .....+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~--~~~~~~~~e~SA~tg~~v 163 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLAR--DLKAVKYVECSALTQKGL 163 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHH--HhCCcEEEEecCCCCCCH
Confidence 8654322111100 0000000 112246788999999998
No 198
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.47 E-value=2.4e-13 Score=125.64 Aligned_cols=143 Identities=21% Similarity=0.257 Sum_probs=83.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||++++++..+.. ...+|+ .... .+..+. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~----------------~---------------- 45 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG---EYDPNLESLYSRQVTIDG----------------E---------------- 45 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc---ccCCChHHhceEEEEECC----------------E----------------
Confidence 48999999999999999999866421 112222 1111 110000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK 210 (551)
...+.+|||||.... .......++..+|++++|+|+.+.........+...+. ..+.|+++|+||
T Consensus 46 ~~~~~i~D~~g~~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 46 QVSLEILDTAGQQQA----------DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEEEECCCCccc----------ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 024789999998741 12234456789999999999986222222233444333 236899999999
Q ss_pred CCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCC-CC
Q psy11743 211 ADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQ-PL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~-~~ 252 (551)
+|+.....+... ........ + .+.+.+||++|. ++
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~----~---~~~~e~Sa~~~~~~v 152 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASEL----G---CLFFEVSAAEDYDGV 152 (165)
T ss_pred CchHHhCccCHHHHHHHHHHc----C---CEEEEeCCCCCchhH
Confidence 998543221111 11111111 1 356789999884 66
No 199
>PRK12735 elongation factor Tu; Reviewed
Probab=99.47 E-value=5.8e-13 Score=140.66 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=73.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl~~ 215 (551)
.++.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|.+ +|+||+|+.+
T Consensus 75 ~~i~~iDtPGh~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 75 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred cEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 4689999999842 66777788899999999999986 677777788888887888866 5799999986
Q ss_pred HHHHHHHH----HHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+.. ...+...+. .....+++++||++|.+.
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~--~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDF--PGDDTPIIRGSALKALEG 181 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCC--CcCceeEEecchhccccC
Confidence 44332222 222222222 112367899999988764
No 200
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.46 E-value=6.3e-13 Score=129.33 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=84.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||++++++..+.. ....+|. +.. ..+... +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~-----------------~~----~-------- 49 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD--HAYDASGDDDTYERTVSVD-----------------GE----E-------- 49 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc--cCcCCCccccceEEEEEEC-----------------CE----E--------
Confidence 379999999999999999998766420 1111121 111 111110 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh-ccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE-RVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~-~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVl 208 (551)
..+.+|||||... +. ...+.. .+|++++|+|+.+........+++..+.. .+.|+++|+
T Consensus 50 ---~~l~i~Dt~G~~~-----------~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 ---STLVVIDHWEQEM-----------WT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred ---EEEEEEeCCCcch-----------HH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 3488999999861 11 112334 89999999999863222222445555443 368999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.....+.......+ ... ...+.+.+||.++.|+
T Consensus 114 NK~Dl~~~~~v~~~~~~~~-a~~-----~~~~~~e~SA~~~~gv 151 (221)
T cd04148 114 NKSDLARSREVSVQEGRAC-AVV-----FDCKFIETSAGLQHNV 151 (221)
T ss_pred EChhccccceecHHHHHHH-HHH-----cCCeEEEecCCCCCCH
Confidence 9999975432211111111 111 1235678999999988
No 201
>KOG0092|consensus
Probab=99.46 E-value=1.5e-13 Score=125.23 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=98.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||+-++....+. ....||... +|.....+ +++.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~---e~~e~TIGa--------------------------aF~tktv~--~~~~ 52 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFH---ENIEPTIGA--------------------------AFLTKTVT--VDDN 52 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccc---ccccccccc--------------------------EEEEEEEE--eCCc
Confidence 3478999999999999999999988863 323344322 11111000 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc---EEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK---IRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~---vilVlNK~ 211 (551)
.-++.||||+|... |.....-+.++|+++|+|+|+++.......+.|+..|++..-| +-+|.||+
T Consensus 53 -~ikfeIWDTAGQER-----------y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~ 120 (200)
T KOG0092|consen 53 -TIKFEIWDTAGQER-----------YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKA 120 (200)
T ss_pred -EEEEEEEEcCCccc-----------ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchh
Confidence 14588999999976 4555666779999999999999755555667888888765334 44699999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....++.. .......+. ....+.+||++|.++
T Consensus 121 DL~~~R~V~~~ea~~yAe~~-------gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 121 DLLERREVEFEEAQAYAESQ-------GLLFFETSAKTGENV 155 (200)
T ss_pred hhhhcccccHHHHHHHHHhc-------CCEEEEEecccccCH
Confidence 9987443321 112222222 335677999999998
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.46 E-value=1.2e-12 Score=143.98 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=83.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc--ccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG--SVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~--~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+.|.|+++|++|+|||||+|+|.+.... ...++-.|... ...+.+... ...+.... . .+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~i-g~~~~~~~~~~~~~~~~~~--------~--------~~ 65 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHI-GATEVPIDVIEKIAGPLKK--------P--------LP 65 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEee-ceeeccccccccccceecc--------c--------cc
Confidence 5689999999999999999999887642 22222111111 000000000 00000000 0 00
Q ss_pred CCC-ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 133 SPV-LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 133 ~~~-l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+ +..+++|||||+.. |.......+..+|++++|+|+++ +...+..+.+..+...+.|+++|+||+
T Consensus 66 ~~~~~~~i~~iDTPG~e~-----------f~~~~~~~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~~vpiIvviNK~ 133 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEA-----------FTNLRKRGGALADIAILVVDINE-GFQPQTIEAINILKRRKTPFVVAANKI 133 (586)
T ss_pred cccccCCEEEEECCChHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECc
Confidence 000 12489999999865 55555567789999999999996 677777777777777889999999999
Q ss_pred CCC
Q psy11743 212 DMV 214 (551)
Q Consensus 212 Dl~ 214 (551)
|+.
T Consensus 134 D~~ 136 (586)
T PRK04004 134 DRI 136 (586)
T ss_pred CCc
Confidence 986
No 203
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=5e-13 Score=143.80 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=99.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCccceEE--EEEeCCCccccCCCCcccccccccc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNS 121 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~ 121 (551)
....+|+++|+.++|||||+++|+...-..... ..+.+.+.+. .++....+..-.|..++.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~------- 97 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV------- 97 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe-------
Confidence 355899999999999999999999875322210 0222222211 111111110011111110
Q ss_pred cccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC
Q psy11743 122 FLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD 201 (551)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 201 (551)
.+. ....+ -.++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+
T Consensus 98 ---~~~--~~~~~-~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~-G~~~qt~~~~~l~~~lg 159 (474)
T PRK05124 98 ---AYR--YFSTE-KRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARK-GVLDQTRRHSFIATLLG 159 (474)
T ss_pred ---eEE--EeccC-CcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CccccchHHHHHHHHhC
Confidence 000 01000 14689999999643 55566666799999999999986 66665555444444434
Q ss_pred -CcEEEEEcCCCCCCH-HHHHHHHHHHHHH-cccccCCCCceEEEecccCCCCCc
Q psy11743 202 -DKIRIVLNKADMVDH-QQLMRVYGALMWS-LGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 202 -~~vilVlNK~Dl~~~-~~~~~~~~~~~~~-l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++++|+||+|+... ++........+.. +..+......+++++||++|.|+.
T Consensus 160 ~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 160 IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 468899999999842 2211112222211 111111235688999999999983
No 204
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.46 E-value=6.4e-13 Score=123.95 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=86.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+++|++..+.. ...||... +. .+..+ +. .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~----~--------- 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYVADIEVD-----------------GK----Q--------- 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccccceEEEEEEC-----------------CE----E---------
Confidence 579999999999999999999987531 12223211 11 01000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~ 211 (551)
..+.++||||... +.......+..+|++++|+|..+....... ..+...++. .+.|+++|+||+
T Consensus 49 --~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (175)
T cd01870 49 --VELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 115 (175)
T ss_pred --EEEEEEeCCCchh-----------hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 2478999999854 222222356899999999999852111111 224444443 378999999999
Q ss_pred CCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ....+.. .....+++.+||++|.|+
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 163 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMAN--KIGAFGYMECSAKTKEGV 163 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHH--HcCCcEEEEeccccCcCH
Confidence 98754322111110 0000000 112236789999999988
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.46 E-value=2.6e-12 Score=141.28 Aligned_cols=165 Identities=23% Similarity=0.232 Sum_probs=102.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+|+|+.++|||||+++|+...-. .. ..+..+++ ++.......-.|.. .......+.. .. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~-~~-~~~~v~~~---~~D~~~~ErerGiT----------I~~~~~~v~~-~~--~ 64 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGT-FR-ANEAVAER---VMDSNDLERERGIT----------ILAKNTAIRY-NG--T 64 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC-Cc-ccccceee---cccCchHHHhCCcc----------EEeeeEEEEE-CC--E
Confidence 6999999999999999999975311 11 11111111 11111100011111 1111000100 01 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+...
T Consensus 65 kinlIDTPGh~D-----------F~~ev~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 65 KINIVDTPGHAD-----------FGGEVERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPSAR 132 (594)
T ss_pred EEEEEECCCHHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC
Confidence 699999999865 67778888999999999999986 77788888888888889999999999998642
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.+.....+..++........|++++||+.|.+.
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 233333333333333211112357899999988754
No 206
>PLN03126 Elongation factor Tu; Provisional
Probab=99.46 E-value=9.9e-13 Score=141.00 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=102.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+++|+.++|||||+++|++........... .... +....+....|..++. .....+.+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~----~~~~-~D~~~~Er~rGiTi~~------------~~~~~~~~- 142 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPK----KYDE-IDAAPEERARGITINT------------ATVEYETE- 142 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhcccccc----cccc-ccCChhHHhCCeeEEE------------EEEEEecC-
Confidence 4579999999999999999999754211000000 0000 0000000001111100 00000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
-..+++|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...++| +++++||+|+.
T Consensus 143 ~~~i~liDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 143 NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CcEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 14689999999864 66777788889999999999996 7888888888888888888 77899999998
Q ss_pred CHHHHHHHHH----HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYG----ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~----~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.++..+.+. ..+...++ .....+++++|++++.+.
T Consensus 211 ~~~~~~~~i~~~i~~~l~~~g~--~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 211 DDEELLELVELEVRELLSSYEF--PGDDIPIISGSALLALEA 250 (478)
T ss_pred CHHHHHHHHHHHHHHHHHhcCC--CcCcceEEEEEccccccc
Confidence 7554333222 22222332 223578899999988654
No 207
>KOG1423|consensus
Probab=99.46 E-value=4.4e-14 Score=137.11 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=138.1
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhH
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..+...++++|.|||||||+.|.+.|++. ++++.++.|||+.. +..+..+++|.||||+..++.... .+...+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~--~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR--HHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh--HHHHHH
Confidence 34567999999999999999999999994 89999999998544 455899999999999999885533 333445
Q ss_pred HHhhhhhhccccCccc-------cccccc----------ccceeEEEecccCCCCccchhhhhhhhh-ccChhhHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLK-------GKVLQT----------PEVARVYIGSFWDQPLVHDVNRRLFEDR-SSTSNSVQAYII 441 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~-------~~~~~~----------~~~~~v~~~~~wd~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 441 (551)
++.....|+..+|.+. ....-. ..++.|+|.||.|.+.+....-.+.+.. +..+.....++.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 6777778888887532 122222 2467799999999842211110000000 000000011111
Q ss_pred HHHHhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhc
Q psy11743 442 SALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQ 521 (551)
Q Consensus 442 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (551)
+++ ...|-. +..+.+ -.|..|.....+++..++.++.|.+.+-...+-.+ +.++.+..
T Consensus 225 ~~f-~~~p~~--------~~~~~~----~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp----W~y~a~i~----- 282 (379)
T KOG1423|consen 225 EKF-TDVPSD--------EKWRTI----CGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP----WKYPADIV----- 282 (379)
T ss_pred HHh-ccCCcc--------cccccc----cCcccceeEEEEecccccCHHHHHHHHHhcCCCCC----CCCCcccc-----
Confidence 111 111210 000000 01333444556788888888887776544333233 55556666
Q ss_pred cCCCCCCCccchHHHHHHHHHhHhhhh
Q psy11743 522 HHDFTKFQTLRPRLIEVADKMLAEDIA 548 (551)
Q Consensus 522 ~~d~~~~~~~~~~~~~~~~~~~~~~~~ 548 (551)
++-+..+.+.+.+||+|...+.+|+|
T Consensus 283 -T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 283 -TEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred -cccCHHHHHHHHHHHHHHhhCccccC
Confidence 88888889999999999999999998
No 208
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.5e-13 Score=147.76 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=116.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+++++|+|||||||+.|+|.|.+ ..|+++||+| | .....+.++++.++|.||+++-. +.+.-|+.+..|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~---q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~-~~S~DE~Var~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN---QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT-AYSEDEKVARDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC---ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC-CCCchHHHHHHHHh
Confidence 4679999999999999999999998 8999999999 2 55577788889999999999987 77888999998887
Q ss_pred hhhhhccccCc--------------ccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhcc
Q psy11743 383 RFQCSLVNSPV--------------LKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDM 448 (551)
Q Consensus 383 ~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 448 (551)
+ .+.|+ ....++.+.+++.|++.|++|+ ++++.++...+.+.+.|. +
T Consensus 79 ~-----~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~------------A~~~Gi~ID~~~L~~~LG--v 139 (653)
T COG0370 79 E-----GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDE------------AKKRGIRIDIEKLSKLLG--V 139 (653)
T ss_pred c-----CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhh------------HHhcCCcccHHHHHHHhC--C
Confidence 4 22333 2345666678889999999999 556666666777777664 7
Q ss_pred chhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 449 PSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 449 ~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
|++.+ ++|++ +++++++.+.++.
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhccc
Confidence 88887 88888 9999999987753
No 209
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=3.8e-13 Score=127.62 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=86.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+++|++..+.. ...||... .. .+..+ +.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~---~~~~t~~~~~~~~i~~~-----------------~~--------------- 46 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ---VYEPTVFENYVHDIFVD-----------------GL--------------- 46 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccCCcceeeeEEEEEEC-----------------CE---------------
Confidence 68999999999999999999987632 11222211 10 00000 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~ 211 (551)
-..+.++||||... +......++..+|++++|+|..+. -+.+. ..++..+.. .+.|+++|.||+
T Consensus 47 ~~~l~i~Dt~G~~~-----------~~~l~~~~~~~a~~~ilv~dv~~~-~sf~~~~~~~~~~i~~~~~~~piilvgNK~ 114 (189)
T cd04134 47 HIELSLWDTAGQEE-----------FDRLRSLSYADTDVIMLCFSVDSP-DSLENVESKWLGEIREHCPGVKLVLVALKC 114 (189)
T ss_pred EEEEEEEECCCChh-----------ccccccccccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 03488999999754 222333456899999999999862 22222 235555543 368999999999
Q ss_pred CCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+... .....+.. .....+.+.+||++|.|+
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~SAk~~~~v 162 (189)
T cd04134 115 DLREARNERDDLQRYGKHTISYEEGLAVAK--RINALRYLECSAKLNRGV 162 (189)
T ss_pred hhccChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEccCCcCCCH
Confidence 9976433221100 00000000 112245688999999988
No 210
>PRK00049 elongation factor Tu; Reviewed
Probab=99.45 E-value=9.3e-13 Score=139.04 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++... ..+... .....++....+..-.|...+. . .+....+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~~--~~~~~~~d~~~~E~~rg~Ti~~----------~--~~~~~~~ 73 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAE--AKAYDQIDKAPEEKARGITINT----------A--HVEYETE 73 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhh---hccCCc--ccchhhccCChHHHhcCeEEee----------e--EEEEcCC
Confidence 446899999999999999999998421 000000 0000000000000001111100 0 0000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl 213 (551)
-.++.++||||+.+ |...+...+..+|++++|+|+.. +...++.+++..+...+.|.+ +++||+|+
T Consensus 74 -~~~i~~iDtPG~~~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 -KRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred -CeEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 14689999999842 67777788899999999999996 788888888888888889976 58999999
Q ss_pred CCHHHHHHH----HHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 214 VDHQQLMRV----YGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 214 ~~~~~~~~~----~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
.+.++..+. +...+..++. .....|++++||+++.+
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDF--PGDDTPIIRGSALKALE 180 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCC--CccCCcEEEeecccccC
Confidence 864433222 2223322222 12346889999998754
No 211
>KOG0084|consensus
Probab=99.45 E-value=3.1e-13 Score=123.68 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=99.0
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..++|+|+|.+|||||.|+-++.+..+.. ....| +.|..... .++.-|..
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sT----IGVDf~~r----------t~e~~gk~---------- 57 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYIST----IGVDFKIR----------TVELDGKT---------- 57 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcch---hhcce----eeeEEEEE----------EeeecceE----------
Confidence 34567899999999999999999999887631 11112 11111110 11111111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
-.+.||||+|... |...+..+.++|+.||+|+|.++.........|+..+++ .+.|.++|.
T Consensus 58 -----iKlQIWDTAGQER-----------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVG 121 (205)
T KOG0084|consen 58 -----IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVG 121 (205)
T ss_pred -----EEEEeeeccccHH-----------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEe
Confidence 2589999999864 778889999999999999999963333333566666664 356899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+.......+. . ..+.++.+.+||+.+.++
T Consensus 122 NK~Dl~~~~~v~~~~a~~fa---~--~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 122 NKCDLTEKRVVSTEEAQEFA---D--ELGIPIFLETSAKDSTNV 160 (205)
T ss_pred eccccHhheecCHHHHHHHH---H--hcCCcceeecccCCccCH
Confidence 99999865443222222221 1 111222778999988876
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.45 E-value=4.6e-13 Score=124.81 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=85.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|+|||||++++++..+... ..||. +.... +..+. .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~-------------- 46 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTVGG-----------------K-------------- 46 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEECC-----------------E--------------
Confidence 3799999999999999999998875311 11221 11111 10000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|..+ .-+.+. ..+...+. ..+.|+++|+||
T Consensus 47 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~~~~~-~~s~~~~~~~~~~~l~~~~~~~piivv~nK 113 (174)
T cd04135 47 -QYLLGLYDTAGQED-----------YDRLRPLSYPMTDVFLICFSVVN-PASFQNVKEEWVPELKEYAPNVPYLLVGTQ 113 (174)
T ss_pred -EEEEEEEeCCCccc-----------ccccccccCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhhCCCCCEEEEeEc
Confidence 02378999999764 12222345678999999999985 222111 23444443 357899999999
Q ss_pred CCCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+......... ........ .....+.+.+||++|.|+
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~gi 162 (174)
T cd04135 114 IDLRDDPKTLARLNDMKEKPVTVEQGQKLAK--EIGAHCYVECSALTQKGL 162 (174)
T ss_pred hhhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEecCCcCCCH
Confidence 99865332111000 00000001 112235788999999998
No 213
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.45 E-value=3.2e-13 Score=126.01 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=87.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+.. ...||. +...... .+++ .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~------------------------------~~~~-~ 46 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT---EYVPTAFDNFSVVV------------------------------LVDG-K 46 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEE------------------------------EECC-E
Confidence 368999999999999999999876521 222332 1111100 0000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|..+ ..+.+. ..++..+.. .+.|+++|+||+
T Consensus 47 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~a~~~i~v~d~~~-~~sf~~~~~~~~~~~~~~~~~~piilv~nK~ 114 (173)
T cd04130 47 PVRLQLCDTAGQDE-----------FDKLRPLCYPDTDVFLLCFSVVN-PSSFQNISEKWIPEIRKHNPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEEECCCChh-----------hccccccccCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 03478999999854 22223346689999999999985 222221 245555543 368999999999
Q ss_pred CCCCHHHHHH---------HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR---------VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~---------~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... +-......+.. .....+++.+||++|.|+
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~Sa~~~~~v 162 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAE--KIGACEYIECSALTQKNL 162 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHHH--HhCCCeEEEEeCCCCCCH
Confidence 9975321100 00000001111 112236788999999988
No 214
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.45 E-value=2.1e-12 Score=116.86 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=83.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
++|+++|.+|+|||||+|+|++... .....+..+.+.... +..+. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~-------------- 48 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEYKPGTTRNYVTTVIEEDG------------------K-------------- 48 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcCCCCceeeeeEEEEEECC------------------E--------------
Confidence 5899999999999999999999873 222222222222111 11110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC------CCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL------DISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~------~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
...+.+|||||... +..........++.++.++|.... ........+...+ ..+.|+++|+|
T Consensus 49 ~~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~n 116 (161)
T TIGR00231 49 TYKFNLLDTAGQED-----------YRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGN 116 (161)
T ss_pred EEEEEEEECCCccc-----------chHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEE
Confidence 02378999999643 233334445667777777776531 1111112222222 22789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.... ........+..++ ..+.+.+||..+.++
T Consensus 117 K~D~~~~~-~~~~~~~~~~~~~------~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 117 KIDLRDAK-LKTHVAFLFAKLN------GEPIIPLSAETGKNI 152 (161)
T ss_pred cccCCcch-hhHHHHHHHhhcc------CCceEEeecCCCCCH
Confidence 99998743 2222233332222 235788999988887
No 215
>KOG2485|consensus
Probab=99.45 E-value=4.2e-13 Score=131.28 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=115.6
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
..-+-||+... -.+.++.-+...|+||.|-||+ .+++.....+-+.+. .++-|+|+||+||.+..+.
T Consensus 25 ~~~wfpgHmak----------alr~i~~~l~~~D~iiEvrDaR-iPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~ 91 (335)
T KOG2485|consen 25 PRRWFPGHMAK----------ALRAIQNRLPLVDCIIEVRDAR-IPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQ 91 (335)
T ss_pred ccccCchHHHH----------HHHHHHhhcccccEEEEeeccc-cCCccccHHHHHhcC--CCceEEEEecccccCchhh
Confidence 34456777531 2456667789999999999999 588888866666655 7889999999999996665
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYE 299 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 299 (551)
..+....-|.... . ....++....+ .++.+++..+... ..++.+..+
T Consensus 92 k~~iq~~~~~~~~---~----~~~~~c~~~~~-----------~~v~~l~~il~~~--------~~~l~r~ir------- 138 (335)
T KOG2485|consen 92 KKIIQYLEWQNLE---S----YIKLDCNKDCN-----------KQVSPLLKILTIL--------SEELVRFIR------- 138 (335)
T ss_pred hHHHHHHHhhccc---c----hhhhhhhhhhh-----------hccccHHHHHHHH--------HHHHHHhhc-------
Confidence 5555555554222 0 01112111110 1112232222100 111111111
Q ss_pred ccccCCCcEEEEEeecCCChhHHHHHHHhCC---CCcccccCCCcccceEE--EE-ecCCCccccCCceeecCC
Q psy11743 300 DADFDAKPTVMLVGQYSTGKTTFIRYLLERD---FPGIHIGPEPTTDRFIA--VM-YDEREGSVPGNALVVDPK 367 (551)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~---~~~~~v~~~~~~tr~~~--~~-~~~~~~~l~dt~gi~~~~ 367 (551)
.....+.++++|.|||||||++|++.... ...+.++.+||.|+.+. +. .++..+.++||||+..|.
T Consensus 139 --t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 139 --TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred --ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 12246789999999999999999998662 24589999999998554 23 366778899999999986
No 216
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.44 E-value=9.2e-13 Score=123.28 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=87.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+.++++..+. ....||......... .++.. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~---~~~~~t~~~~~~~~~-----------------------------~~~~~-~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANV-----------------------------MVDGK-P 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CcCCCcceeeeEEEE-----------------------------EECCE-E
Confidence 47999999999999999999987652 222333321110000 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++|+|+|..+....... ..++..+.. .+.|+++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 49 VNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEECCCchh-----------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 3478999999754 344445567899999999999862211121 234444432 36899999999999
Q ss_pred CCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+.+.. ....+.. .....+.+.+||++|.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~~i 163 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQKGL 163 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEecccccCCH
Confidence 643211100000 0000000 112236788999999988
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.44 E-value=8.7e-13 Score=139.69 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCcc--ceEEEEEeCCCccccCCCCccccccccccccc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTT--DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLN 124 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt--~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~ 124 (551)
.+|+++|+.++|||||+++|+...-..... ..+.+. -....++....+..-.|..++ .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid----------~ 70 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITID----------V 70 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeE----------e
Confidence 369999999999999999999765321110 011111 111222221111111111111 0
Q ss_pred ceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-c
Q psy11743 125 RFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-K 203 (551)
Q Consensus 125 ~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~ 203 (551)
.+..... .. .++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+. +
T Consensus 71 ~~~~~~~-~~--~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~-G~~~qt~~~~~~~~~~~~~~ 135 (406)
T TIGR02034 71 AYRYFST-DK--RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARK-GVLEQTRRHSYIASLLGIRH 135 (406)
T ss_pred eeEEEcc-CC--eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCccccHHHHHHHHHcCCCc
Confidence 0111111 11 4689999999754 56666678899999999999986 777777666666655444 5
Q ss_pred EEEEEcCCCCCCHH-HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 204 IRIVLNKADMVDHQ-QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 204 vilVlNK~Dl~~~~-~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++|+||+|+.... +..+.....+..+..-.+....+++++||++|.|+.
T Consensus 136 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 136 VVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 88899999998522 221111222211111012224578999999999883
No 218
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.44 E-value=3.2e-12 Score=125.22 Aligned_cols=88 Identities=27% Similarity=0.333 Sum_probs=58.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||+|+|+|.... +...+.+|.+.....+. ++ + .
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~-----------------~~-----~-----------~ 47 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLE-----------------YK-----G-----------A 47 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEE-----------------EC-----C-----------e
Confidence 6899999999999999999997632 33334444443322111 00 0 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
.+.++||||+.+.... ...+..+....++++|++++|+|+.+
T Consensus 48 ~i~l~DtpG~~~~~~~----~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 48 KIQLLDLPGIIEGAAD----GKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEEEECCCccccccc----chhHHHHHHHhhccCCEEEEEecCCc
Confidence 5899999998764321 11234455667899999999999874
No 219
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.43 E-value=4.9e-12 Score=139.48 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.||||||+.+ |...+..++..+|++++|+|+++ +.+.+....+..+...+.|+++|+||+|+...
T Consensus 71 ~l~liDTPG~~d-----------F~~~v~~~l~~aD~aILVvDat~-g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 71 VLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDAAQ-GIEAQTLANVYLALENDLEIIPVINKIDLPSAD 138 (595)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEecCCC-CCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC
Confidence 589999999975 56667788999999999999996 66666554444444567899999999998642
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...+.+.. .++ .+...++++||++|.|+
T Consensus 139 ~~~~~~el~~---~lg----~~~~~vi~vSAktG~GI 168 (595)
T TIGR01393 139 PERVKKEIEE---VIG----LDASEAILASAKTGIGI 168 (595)
T ss_pred HHHHHHHHHH---HhC----CCcceEEEeeccCCCCH
Confidence 221111211 122 22235789999999987
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=99.43 E-value=6e-12 Score=138.30 Aligned_cols=168 Identities=21% Similarity=0.163 Sum_probs=103.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+.++|||||+++|+...-.... .+.+.+ .+..+.+.+ ...|..+. .....-.+.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~--~~~~~~--~v~D~~~~E-~erGiTi~--~~~~~i~~~~--------- 67 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDS--RAETQE--RVMDSNDLE-KERGITIL--AKNTAIKWND--------- 67 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccc--ccccce--eeecccccc-ccCceEEE--EEEEEEecCC---------
Confidence 3467999999999999999999974311111 111111 111111111 00110000 0000000111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|.++|+||+|+.
T Consensus 68 --~~inliDTPG~~d-----------f~~~v~~~l~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 68 --YRINIVDTPGHAD-----------FGGEVERVMSMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred --EEEEEEECCCcch-----------hHHHHHHHHHhCCEEEEEEeccc-CccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 4689999999875 56677788999999999999986 777777778888778899999999999986
Q ss_pred CH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. +...+.....+-.++........|++++||++|.+.
T Consensus 134 ~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 134 GARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred CCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCccc
Confidence 42 222233333332223221122468999999998754
No 221
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.43 E-value=2.2e-12 Score=122.58 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||+++++...+. ....||........ +.+++.
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~-----------------------------~~~~~~ 49 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFP---KEYIPTVFDNYSAQ-----------------------------TAVDGR 49 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCC---cCCCCceEeeeEEE-----------------------------EEECCE
Confidence 3478999999999999999999987752 22233321110000 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++.++|++++|+|..+........ .|...+.. .+.|+++|.||+
T Consensus 50 -~~~l~i~Dt~G~e~-----------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~ 117 (191)
T cd01875 50 -TVSLNLWDTAGQEE-----------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKK 117 (191)
T ss_pred -EEEEEEEECCCchh-----------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeCh
Confidence 03488999999864 4545556788999999999998622212222 24443332 468999999999
Q ss_pred CCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ....+.. .....+.+.+||++|.|+
T Consensus 118 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~SAk~g~~v 165 (191)
T cd01875 118 DLRNDADTLKKLKEQGQAPITPQQGGALAK--QIHAVKYLECSALNQDGV 165 (191)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEeCCCCCCCH
Confidence 99643221111000 0000000 111236788999999988
No 222
>KOG1489|consensus
Probab=99.43 E-value=1.9e-12 Score=126.57 Aligned_cols=151 Identities=25% Similarity=0.327 Sum_probs=98.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....-|.+||-||+|||||+|+|...+- .++..+.|+ ... .++|++.
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf--------------------------- 243 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDF--------------------------- 243 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeecccc---------------------------
Confidence 3446789999999999999999998763 333333222 111 2222220
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCC
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDD 202 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~ 202 (551)
.++++-|.||+..+....-..+++|. ..+++|+.++||+|.+.. ..+.+...+...+.. ..+
T Consensus 244 ------~q~tVADiPGiI~GAh~nkGlG~~FL----rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~r 313 (366)
T KOG1489|consen 244 ------SQITVADIPGIIEGAHMNKGLGYKFL----RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADR 313 (366)
T ss_pred ------ceeEeccCccccccccccCcccHHHH----HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccC
Confidence 34899999999986654444444444 456899999999999964 334444444444432 468
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 203 KIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 203 ~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.++|+||+|+.+.++ ..+.++..++.. +.++.+||+.++++
T Consensus 314 p~liVaNKiD~~eae~--~~l~~L~~~lq~------~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 314 PALIVANKIDLPEAEK--NLLSSLAKRLQN------PHVVPVSAKSGEGL 355 (366)
T ss_pred ceEEEEeccCchhHHH--HHHHHHHHHcCC------CcEEEeeeccccch
Confidence 8999999999964332 122344433332 26889999998887
No 223
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=4.2e-13 Score=140.55 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=47.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC-CCccccCCceeecCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE-REGSVPGNALVVDPK 367 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~-~~~~l~dt~gi~~~~ 367 (551)
.|+|+|.||+|||||+|+|.+.. ..|+++|+||+... +.+++ ..+.|+||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k---~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK---PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc---ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999887 58999999997333 34454 459999999998754
No 224
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.42 E-value=1.1e-12 Score=144.47 Aligned_cols=141 Identities=21% Similarity=0.160 Sum_probs=87.7
Q ss_pred eccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEE
Q psy11743 63 GQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIV 142 (551)
Q Consensus 63 G~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lI 142 (551)
|++|||||||+|+|+|.+. .+...|+.|.+....... ++ + .++.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~-----------------~~-----~-----------~~i~lv 46 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLG-----------------FQ-----G-----------EDIEIV 46 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEE-----------------EC-----C-----------eEEEEE
Confidence 8999999999999999874 344445545444322111 00 0 348999
Q ss_pred eCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 143 DTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 143 DTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
||||+.+-... +.. .+..+.++ ..+|++++|+|+++ . +....+...+.+.+.|+++|+||+|+.+.....
T Consensus 47 DtPG~~~~~~~--s~~---e~v~~~~l~~~~aDvvI~VvDat~--l-er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 47 DLPGIYSLTTF--SLE---EEVARDYLLNEKPDLVVNVVDASN--L-ERNLYLTLQLLELGIPMILALNLVDEAEKKGIR 118 (591)
T ss_pred ECCCccccCcc--chH---HHHHHHHHhhcCCCEEEEEecCCc--c-hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh
Confidence 99999763221 110 12223332 47999999999985 2 223344455566789999999999986433221
Q ss_pred HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 221 RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.........+ ..+++.+||++|.|+
T Consensus 119 ~d~~~L~~~l-------g~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 119 IDEEKLEERL-------GVPVVPTSATEGRGI 143 (591)
T ss_pred hhHHHHHHHc-------CCCEEEEECCCCCCH
Confidence 1112222222 246889999999988
No 225
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=2.9e-12 Score=120.38 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=73.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+. ....||....... .+.++.. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~-----------------------------~~~~~~~-~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP---ETYVPTVFENYTA-----------------------------SFEIDEQ-R 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC---CCcCCceEEEEEE-----------------------------EEEECCE-E
Confidence 57999999999999999999988753 2222332111000 0000000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.+|||||... +......++..+|++|+|+|..+....... ..|...+++ ...|+++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 49 IELSLWDTSGSPY-----------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEEEECCCchh-----------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhh
Confidence 3488999999753 333444567899999999999863222221 345555543 36789999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
.+
T Consensus 118 ~~ 119 (178)
T cd04131 118 RT 119 (178)
T ss_pred hc
Confidence 53
No 226
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.41 E-value=2.9e-12 Score=120.76 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=75.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||++++++..+. ....||........ +.+++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~---~~~~pT~~~~~~~~-----------------------------~~~~~~ 51 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTAS-----------------------------FEIDTQ 51 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC---CccCCceeeeeEEE-----------------------------EEECCE
Confidence 3568999999999999999999988753 22233321110000 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
.-.+.+|||+|... +......++.++|++++|+|..+ .-+... ..|...+++ .+.|+++|.||
T Consensus 52 -~~~l~iwDtaG~e~-----------~~~~~~~~~~~ad~~ilvyDit~-~~Sf~~~~~~w~~~i~~~~~~~piilVgNK 118 (182)
T cd04172 52 -RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGCK 118 (182)
T ss_pred -EEEEEEEECCCchh-----------hHhhhhhhcCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEeEC
Confidence 03488999999753 44455567899999999999986 222222 345555543 36789999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+.+
T Consensus 119 ~DL~~ 123 (182)
T cd04172 119 SDLRT 123 (182)
T ss_pred hhhhc
Confidence 99853
No 227
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.40 E-value=3.5e-12 Score=135.20 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+...+..+|++++|+|+.. +. ..+..+.+..+...+ +++++|+||+|+.
T Consensus 80 ~~i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 80 RRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 4689999999854 66667777889999999999996 44 455555565555444 4689999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+......+... .....+++++||++|.|+
T Consensus 148 ~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi 184 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGT-VAENAPIIPVSALHNANI 184 (406)
T ss_pred CHHHHHHHHHHHHhhhhhc-ccCCCeEEEEECCCCCCh
Confidence 7544322222111111110 112457899999999887
No 228
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.40 E-value=2.2e-12 Score=120.95 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=89.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|..++|||||+.+++...+. ....||........ +.+++. .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~---~~~~~Ti~~~~~~~-----------------------------~~~~~~-~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSAN-----------------------------VSVDGN-T 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC---CCCCCcceeeeEEE-----------------------------EEECCE-E
Confidence 47999999999999999999987752 22333431111000 000000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~D 212 (551)
-.+.++||+|... +......++.++|++|+|+|..+ .-+.+. ..|+..+++ .+.|+++|.||+|
T Consensus 49 v~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~~ilvyd~~~-~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 49 VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLIS-RASYENVLKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred EEEEEEECCCCcc-----------ccccchhhcCCCcEEEEEEEcCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 3489999999864 34444557789999999999986 233322 345665542 4689999999999
Q ss_pred CCCHHH----------HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQ----------LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~----------~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+... +..... ..+.. .....+.+.+||++|.++
T Consensus 117 l~~~~~~~~~~~~~~~v~~~~~-~~~a~----~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 117 LRDDKQYLADHPGASPITTAQG-EELRK----QIGAAAYIECSSKTQQNV 161 (176)
T ss_pred hccChhhhhhccCCCCCCHHHH-HHHHH----HcCCCEEEECCCCcccCH
Confidence 965321 111111 11111 111125678999999988
No 229
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.40 E-value=2.5e-12 Score=126.25 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=82.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|+.|+|||||+++|+...-.+...+. ..+..+...+...+ .-.|..+. ..+..-.+.+ .
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~--v~~~~~~~D~~~~e-~~rg~ti~--~~~~~~~~~~-----------~ 64 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGS--VDKGTTRTDTMELE-RQRGITIF--SAVASFQWED-----------T 64 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccc--ccCCcccCCCchhH-hhCCCcee--eeeEEEEECC-----------E
Confidence 3899999999999999999986432211110 00000000000000 00000000 0000011111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
++.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+.+.+...++|+++|+||+|+..
T Consensus 65 ~i~liDTPG~~~-----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMD-----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccc-----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 689999999965 56667788899999999999996 7777777888888888999999999999974
No 230
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=7.9e-12 Score=121.87 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=92.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCC-CCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFP-GIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~-~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.....|+++|.+|+|||||+|.|++.... ......++ ++.+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~~~-------------------------------- 80 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVVTG-------------------------------- 80 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEEec--------------------------------
Confidence 34578999999999999999999986311 01101110 111000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~ 211 (551)
...++.++||||.. ..+...+..+|++++|+|+.. +....+..++..+...+.|.+ +|+||+
T Consensus 81 --~~~~i~~vDtPg~~--------------~~~l~~ak~aDvVllviDa~~-~~~~~~~~i~~~l~~~g~p~vi~VvnK~ 143 (225)
T cd01882 81 --KKRRLTFIECPNDI--------------NAMIDIAKVADLVLLLIDASF-GFEMETFEFLNILQVHGFPRVMGVLTHL 143 (225)
T ss_pred --CCceEEEEeCCchH--------------HHHHHHHHhcCEEEEEEecCc-CCCHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 01568999999742 223345688999999999985 777888888888887788854 599999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+++... ..+........+.. ...++.+++++||++...+
T Consensus 144 D~~~~~~~~~~~~~~l~~~~~~-~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 144 DLFKKNKTLRKTKKRLKHRFWT-EVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-hhCCCCcEEEEeeccCCCC
Confidence 9985332 22221111111110 0124678999999877554
No 231
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.40 E-value=3.1e-12 Score=124.86 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||++++++..+. ....||........ ..+.+ .
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~---~~y~pTi~~~~~~~-----i~~~~----------~-------------- 59 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVPTVFENYTAG-----LETEE----------Q-------------- 59 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC---CCcCCceeeeeEEE-----EEECC----------E--------------
Confidence 3468999999999999999999988753 22233321110000 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.||||+|... +......++.++|++++|+|.++ .-+... ..|+..+.+ .+.|+++|.||
T Consensus 60 -~v~l~iwDTaG~e~-----------~~~~~~~~~~~ad~vIlVyDit~-~~Sf~~~~~~w~~~i~~~~~~~piilVgNK 126 (232)
T cd04174 60 -RVELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISR-PETVDSALKKWKAEIMDYCPSTRILLIGCK 126 (232)
T ss_pred -EEEEEEEeCCCchh-----------hHHHHHHHcCCCcEEEEEEECCC-hHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 03489999999753 45556667899999999999986 222221 345555543 36789999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+..
T Consensus 127 ~DL~~ 131 (232)
T cd04174 127 TDLRT 131 (232)
T ss_pred ccccc
Confidence 99853
No 232
>KOG0078|consensus
Probab=99.40 E-value=2.6e-12 Score=119.36 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=101.3
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..++|+++|.++||||+++-++....+. .....| +.|.... ..+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~---~~~~sT----iGIDFk~------------------------kti~l 56 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN---TSFIST----IGIDFKI------------------------KTIEL 56 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCc---CCccce----EEEEEEE------------------------EEEEe
Confidence 4456789999999999999999999987752 111111 1111111 01111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVl 208 (551)
++ .--.+.+|||+|... |...+..++.+|+.+++|+|..+....+....|++.+.++ +.+.++|.
T Consensus 57 ~g-~~i~lQiWDtaGQer-----------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvG 124 (207)
T KOG0078|consen 57 DG-KKIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVG 124 (207)
T ss_pred CC-eEEEEEEEEcccchh-----------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEee
Confidence 11 013588999999875 7888999999999999999998632333335577766643 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....++.....+.+. ..-+.+...+||++|.++
T Consensus 125 NK~D~~~~R~V~~e~ge~lA------~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 125 NKCDLEEKRQVSKERGEALA------REYGIKFFETSAKTNFNI 162 (207)
T ss_pred ccccccccccccHHHHHHHH------HHhCCeEEEccccCCCCH
Confidence 99999875444322222221 112446778999999998
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.40 E-value=7.3e-12 Score=121.19 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=79.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC-CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC--C
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI-GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS--P 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~-~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~--~ 134 (551)
.|+++|+.|+|||||+++|++........ .+...+.. .+........ .|.............. .
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~---~~d~~~~e~~----------~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLR---YTDIRKDEQE----------RGISIKSSPISLVLPDSKG 68 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCcee---ECCCCHHHHH----------cCccccccceeEEEEcCCC
Confidence 58999999999999999999876432110 00001001 0000000000 0110000000000000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
-...+.+|||||+.+ +...+..++..+|++++|+|+.. +.+.....+++.+...+.|+++|+||+|++
T Consensus 69 ~~~~i~iiDtpG~~~-----------f~~~~~~~~~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVN-----------FMDEVAAALRLSDGVVLVVDVVE-GVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcc-----------hHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 014589999999875 55667778899999999999986 566666666666666679999999999986
No 234
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.38 E-value=5.1e-12 Score=125.24 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=96.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
-|.+||-||+|||||++++...+- -+..-|-+|-.....+..-. . -.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~------------------------------~--~~ 207 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVD------------------------------G--GE 207 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEec------------------------------C--CC
Confidence 478999999999999999998762 23333333333322222110 0 05
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC---ChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI---SDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~---~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
++++-|-||+.++..+....+.+|. ..++++-++++|+|.+...- ......+...|.. .++|.++|+|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred cEEEecCcccccccccCCCccHHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 6999999999988766555555554 44689999999999984332 2222334444443 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+...++..+.....+.. ...+...+++|+.++.++
T Consensus 284 KiD~~~~~e~~~~~~~~l~~-----~~~~~~~~~ISa~t~~g~ 321 (369)
T COG0536 284 KIDLPLDEEELEELKKALAE-----ALGWEVFYLISALTREGL 321 (369)
T ss_pred ccCCCcCHHHHHHHHHHHHH-----hcCCCcceeeehhcccCH
Confidence 99966544433333333321 122333344999998887
No 235
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.38 E-value=3.7e-12 Score=125.55 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=82.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|++|||||||+|+|+|.....+...+. +|........ . +.+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~-~T~~~~~~~~-~--------------------~~g-------- 78 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS-ETLRVREVSG-T--------------------VDG-------- 78 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-ceEEEEEEEE-E--------------------ECC--------
Confidence 356899999999999999999999998654433332 3333222110 0 011
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vil 206 (551)
..+.+|||||+.+...... ........+..++. ..|++++|........+..+..+++.+.+. -.++++
T Consensus 79 ---~~i~vIDTPGl~~~~~~~~-~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 79 ---FKLNIIDTPGLLESVMDQR-VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ---eEEEEEECCCcCcchhhHH-HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 4589999999987521110 01112333444453 688999997665445667777777777642 257999
Q ss_pred EEcCCCCCCH
Q psy11743 207 VLNKADMVDH 216 (551)
Q Consensus 207 VlNK~Dl~~~ 216 (551)
|+||+|..++
T Consensus 155 V~T~~d~~~p 164 (249)
T cd01853 155 VLTHAASSPP 164 (249)
T ss_pred EEeCCccCCC
Confidence 9999999854
No 236
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.4e-12 Score=123.17 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=98.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCC---CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIH---IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~---~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+..|+++|.+|+|||||||+|++.+...+. .+..+++.-. ..++.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~--------------------~~~~~----------- 86 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR--------------------LSYDG----------- 86 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH--------------------hhccc-----------
Confidence 3456779999999999999999976643222 1111111110 00111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlN 209 (551)
+.++|+||||+.++... ..++.+....++.+.|++++++|+.+..++. +..+++.+. ..++++++|+|
T Consensus 87 -----~~l~lwDtPG~gdg~~~----D~~~r~~~~d~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 87 -----ENLVLWDTPGLGDGKDK----DAEHRQLYRDYLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred -----cceEEecCCCcccchhh----hHHHHHHHHHHhhhccEEEEeccCCCccccC-CHHHHHHHHHhccCceeEEEEe
Confidence 45999999999986432 2346777888999999999999998744433 334444332 34689999999
Q ss_pred CCCCCCH------------HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH------------QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~------------~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+|...+ ....+.......+++.+. .+.-|+++++...+.|+
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~-q~V~pV~~~~~r~~wgl 210 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF-QEVKPVVAVSGRLPWGL 210 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH-hhcCCeEEeccccCccH
Confidence 9998654 122222333333333322 23557888887777776
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=1.1e-11 Score=124.43 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=82.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC------CccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE------PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~------~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+++|++|+|||||+|+|++..+......+. +.|......... +...|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~-------------i~~~g---------- 60 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE-------------IEENG---------- 60 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE-------------EEECC----------
Confidence 3689999999999999999999988643322111 111111100000 00000
Q ss_pred ecCCCCccCeEEEeCCCCCCCccccccc--cc-----chHHHHH--------HHH--hccCEEEEEEeCCCCCCChHHHH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDR--GY-----DFTGVLE--------WFA--ERVDRIILLFDAHKLDISDEFRR 192 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~-----~~~~~~~--------~~~--~~aD~il~VvDa~~~~~~~~~~~ 192 (551)
.-..+++|||||+.+........ -. .+...+. ..+ .++|++++++++...++...+.+
T Consensus 61 -----~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~ 135 (276)
T cd01850 61 -----VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE 135 (276)
T ss_pred -----EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH
Confidence 00358999999997643210000 00 0000000 011 26899999999885577888889
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
+++.+.. ..|+++|+||+|++..+++
T Consensus 136 ~lk~l~~-~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 136 FMKRLSK-RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence 9998876 7899999999999886554
No 238
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.36 E-value=8.4e-12 Score=140.85 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=97.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+....|+|+|++|+|||||+|+|+...-.... .+.+.+. ..++.........|..++. ....-.|.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g-~~~~D~~~~e~~rgiti~~--~~~~~~~~~-------- 74 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDG-AATMDWMEQEKERGITITS--AATTVFWKG-------- 74 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCC-ccccCCCHHHHhcCCCEec--ceEEEEECC--------
Confidence 34568999999999999999999975421101 1101000 0000000000001111110 011111112
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...++|+++|+||+|+
T Consensus 75 ---~~i~liDTPG~~~-----------~~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 75 ---HRINIIDTPGHVD-----------FTVEVERSLRVLDGAVAVLDAVG-GVQPQSETVWRQANRYEVPRIAFVNKMDK 139 (689)
T ss_pred ---eEEEEEECCCCcc-----------hhHHHHHHHHHhCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCEEEEEECCCC
Confidence 5699999999975 44456778899999999999996 77788788888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
.... ..+........++. .+.+..+++|+..+
T Consensus 140 ~~~~-~~~~~~~i~~~l~~---~~~~~~ipis~~~~ 171 (689)
T TIGR00484 140 TGAN-FLRVVNQIKQRLGA---NAVPIQLPIGAEDN 171 (689)
T ss_pred CCCC-HHHHHHHHHHHhCC---CceeEEeccccCCC
Confidence 8532 22222222222332 23334566777655
No 239
>PRK00007 elongation factor G; Reviewed
Probab=99.36 E-value=4.5e-12 Score=142.87 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=99.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|++|+|||||+|+|+...-..... +...+..+...+.. ...-.|..++. ....-.|.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~--g~v~~~~~~~D~~~-~E~~rg~ti~~--~~~~~~~~~--------- 74 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKI--GEVHDGAATMDWME-QEQERGITITS--AATTCFWKD--------- 74 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccc--ccccCCcccCCCCH-HHHhCCCCEec--cEEEEEECC---------
Confidence 45689999999999999999998532110000 00000000000000 00001111100 000011111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+..++..+|++++|+|+.. +...++..++..+...++|+++++||+|+.
T Consensus 75 --~~~~liDTPG~~~-----------f~~ev~~al~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 75 --HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVG-GVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred --eEEEEEeCCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 5699999999854 55567888899999999999986 889999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
... ..+........++. .+.++.+++|+..+
T Consensus 141 ~~~-~~~~~~~i~~~l~~---~~~~~~ipisa~~~ 171 (693)
T PRK00007 141 GAD-FYRVVEQIKDRLGA---NPVPIQLPIGAEDD 171 (693)
T ss_pred CCC-HHHHHHHHHHHhCC---CeeeEEecCccCCc
Confidence 643 22233333222332 34456677777665
No 240
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.36 E-value=3.5e-11 Score=132.89 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ |...+..++..+|++|+|+|+++ +...+....+..+...+.|+++|+||+|+...
T Consensus 74 ~~lnLiDTPGh~d-----------F~~~v~~sl~~aD~aILVVDas~-gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 74 YILNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc
Confidence 3589999999975 56667778899999999999996 66666655555555678999999999998643
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. .+........++ .+...++++||++|.|+
T Consensus 142 ~~-~~v~~ei~~~lg----~~~~~vi~iSAktG~GI 172 (600)
T PRK05433 142 DP-ERVKQEIEDVIG----IDASDAVLVSAKTGIGI 172 (600)
T ss_pred cH-HHHHHHHHHHhC----CCcceEEEEecCCCCCH
Confidence 21 111111111122 22235789999999987
No 241
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.36 E-value=2.8e-12 Score=128.01 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=55.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+++.+...++|+++++||+|+...
T Consensus 71 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 71 CVINLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred EEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 4689999999864 55567778899999999999986 66666667777777778999999999998653
No 242
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.36 E-value=8.2e-12 Score=111.60 Aligned_cols=143 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|++|+|||||+|+|++.... .....+|........... .+. ...+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~--~~~~~~t~~~~~~~~~~~---------------~~~---------------~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV--PEEYETTIIDFYSKTIEV---------------DGK---------------KVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC--CcccccchhheeeEEEEE---------------CCE---------------EEEEE
Confidence 5899999999999999998752 122222221111111000 000 04589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-----HHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-----SIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-----~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
++||||... ...........+|++++|+|+.. +.+..... ........+.|+++|+||+|+..
T Consensus 49 l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 49 IWDTAGQER-----------FRSLRRLYYRGADGIILVYDVTD-RESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEecCChHH-----------HHhHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 999999875 22233566789999999999986 33333222 12233456899999999999986
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.............. .....+.+.+|+..+.++
T Consensus 117 ~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 117 ERVVSEEELAEQLA-----KELGVPYFETSAKTGENV 148 (157)
T ss_pred ccchHHHHHHHHHH-----hhcCCcEEEEecCCCCCh
Confidence 54332211011111 223457889999888876
No 243
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.35 E-value=7.5e-12 Score=119.67 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=85.1
Q ss_pred EeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 62 VGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 62 vG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
+|..|||||||++++++..+. ....||.. .+...... ++.. ...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~---~~~~~Tig~~~~~~~~~----------------~~~~--------------~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLVFH----------------TNRG--------------PIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC---CCCCCceeEEEEEEEEE----------------ECCE--------------EEEEE
Confidence 699999999999999976542 12223321 11110000 0000 03589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~~ 218 (551)
||||||... +......++.++|++++|+|+++.........|+..+.+ .+.|+++|.||+|+.....
T Consensus 48 iwDt~G~e~-----------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v 116 (200)
T smart00176 48 VWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV 116 (200)
T ss_pred EEECCCchh-----------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 999999864 555666788999999999999862222222455555554 4689999999999854211
Q ss_pred HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 219 LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+. .. +.. ....+.+.+||++|.|+
T Consensus 117 ~~~~-~~--~~~-----~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 117 KAKS-IT--FHR-----KKNLQYYDISAKSNYNF 142 (200)
T ss_pred CHHH-HH--HHH-----HcCCEEEEEeCCCCCCH
Confidence 1111 11 111 11235688999999998
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.35 E-value=7.2e-12 Score=133.89 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..++||||||+.+ |...+...+..+|++++|+|+.. +. ..+..+.+..+...+.| +|+++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTA-GEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCC-CceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999764 77788888899999999999985 54 35667777778777877 67899
Q ss_pred cCCCCC--C--HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMV--D--HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~--~--~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|.. + .+.. .+.+...+..++. .....+++++|+++|.|+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~--~~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGY--NPEKVPFIPISGWQGDNMI 202 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCC--CcccceEEEeecccCCCcc
Confidence 999943 2 2222 2223333333333 2234789999999999883
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.35 E-value=1.1e-11 Score=132.01 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=72.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~~ 215 (551)
+.+.+|||||+.+ |.+.+...+..+|++++|+|+.......+..+.+..+...+. ++++|+||+|+.+
T Consensus 117 ~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 117 RHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 5799999999753 777888888999999999999862245555555555554444 5889999999987
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+...+.+......+... .....+++++||++|.|+
T Consensus 186 ~~~~~~~~~ei~~~l~~~-~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGT-IADNAPIIPISAQLKYNI 221 (460)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCeEEEeeCCCCCCH
Confidence 554433332221111111 124568999999999887
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.34 E-value=2.5e-11 Score=121.64 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+++|||||..+ +...+..++..+|++++|+|+.. +.......+++.+...++|.++|+||+|....
T Consensus 64 ~~i~liDtPG~~~-----------f~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 64 HKINLIDTPGYAD-----------FVGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEEEECcCHHH-----------HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 4589999999854 56677788899999999999996 66666667777777888999999999998754
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=121.25 Aligned_cols=91 Identities=27% Similarity=0.403 Sum_probs=63.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.-.+|++||.||+|||||+|.|++.+.. +..-+.+|...+-.++ +|..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l-----------------~Y~g-------------- 109 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGML-----------------EYKG-------------- 109 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceE-----------------eecC--------------
Confidence 3468999999999999999999998731 3333333333322222 1221
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-++.++|+||+..+..+...++. ++...+++||+|++|+|+..
T Consensus 110 --a~IQild~Pgii~gas~g~grG~----~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 110 --AQIQLLDLPGIIEGASSGRGRGR----QVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred --ceEEEEcCcccccCcccCCCCcc----eeeeeeccCCEEEEEEecCC
Confidence 35999999999987665444443 34456789999999999985
No 248
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.33 E-value=1.5e-11 Score=119.43 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|..|||||||++++++..+. ....||..... .+..+ +.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~---~~y~pTi~~~~~~~~~~~-----------------~~-------------- 47 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP---GSYVPTVFENYTASFEID-----------------KR-------------- 47 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---CccCCccccceEEEEEEC-----------------CE--------------
Confidence 47999999999999999999988753 22333321110 00000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.||||+|... +......++..+|++|+|+|..+....... ..|...+.. .+.|+++|.||+
T Consensus 48 -~v~L~iwDt~G~e~-----------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~ 115 (222)
T cd04173 48 -RIELNMWDTSGSSY-----------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKL 115 (222)
T ss_pred -EEEEEEEeCCCcHH-----------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECc
Confidence 03488999999753 444555677999999999999862211111 123333332 468999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 116 DL~~ 119 (222)
T cd04173 116 DMRT 119 (222)
T ss_pred cccc
Confidence 9965
No 249
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.33 E-value=1.8e-11 Score=130.90 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC---CChHHHHHHHHHhCCC-CcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFRRSIEALRGHD-DKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~---~~~~~~~~l~~l~~~~-~~vilVlNK~D 212 (551)
..+.+|||||+.+ |...+...+..+|++++|+|+++ + ...+..+.+..+...+ .++++|+||+|
T Consensus 85 ~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 85 YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGD-GEFEVQPQTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCC-CCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence 4589999999753 55566667789999999999986 4 2333333333333334 46889999999
Q ss_pred CCC--HHHHH---HHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 213 MVD--HQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 213 l~~--~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+.+ .+... +.+.......+. .....+++.+||++|.|+.
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~--~~~~~~~i~iSA~~g~ni~ 196 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGY--NPDTVPFIPISAWNGDNVI 196 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCC--CcccceEEEeecccccccc
Confidence 974 22221 122222222222 1223578999999999883
No 250
>KOG1490|consensus
Probab=99.33 E-value=6.5e-12 Score=129.25 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++++|+|.||||||||+|.++..+ +.+.|.++|.+...+-+-+ |.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~d---------------yk--------------- 213 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLD---------------YK--------------- 213 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhh---------------hh---------------
Confidence 45799999999999999999998877 4667777776654433221 10
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHH-HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEF-RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~-~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.+|||||+.+.... +++..-+..+...+.--.+|||+.|.+. .+.+-.. ..++..++. .++|+|+|+||
T Consensus 214 -YlrwQViDTPGILD~plE--drN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 214 -YLRWQVIDTPGILDRPEE--DRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred -eeeeeecCCccccCcchh--hhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 045899999999974321 1111112222334456678999999883 2444333 455666653 48999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|...++++.+.-.+++..+. ....++++-.|..+..|+
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~---~~~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTII---DDGNVKVVQTSCVQEEGV 329 (620)
T ss_pred ccccCccccCHHHHHHHHHHH---hccCceEEEecccchhce
Confidence 999987766554444443322 344468889999988887
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.5e-11 Score=129.01 Aligned_cols=151 Identities=22% Similarity=0.238 Sum_probs=106.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|.|.++|+-..|||||+.++-+.++. ...++--|..+-+.. ++.+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va--~~EaGGITQhIGA~~-------------------------------v~~~ 50 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA--AGEAGGITQHIGAYQ-------------------------------VPLD 50 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc--cccCCceeeEeeeEE-------------------------------EEec
Confidence 5699999999999999999999988763 222222222221111 1100
Q ss_pred --CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 --VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 --~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
-...++|+||||+.. |..+-.+-.+-+|++++|+|+.+ ++.++..+.+..++..+.|+++.+||+|
T Consensus 51 ~~~~~~itFiDTPGHeA-----------Ft~mRaRGa~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~vP~iVAiNKiD 118 (509)
T COG0532 51 VIKIPGITFIDTPGHEA-----------FTAMRARGASVTDIAILVVAADD-GVMPQTIEAINHAKAAGVPIVVAINKID 118 (509)
T ss_pred cCCCceEEEEcCCcHHH-----------HHHHHhcCCccccEEEEEEEccC-CcchhHHHHHHHHHHCCCCEEEEEeccc
Confidence 115699999999975 55554555678999999999997 9999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHccccc--CCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVL--QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~--~~~~~~~v~iSa~~g~~~ 252 (551)
..+... .... ......|... ......++++||++|.|+
T Consensus 119 k~~~np-~~v~-~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 119 KPEANP-DKVK-QELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred CCCCCH-HHHH-HHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 985422 1111 1222334422 112357899999999998
No 252
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.32 E-value=2.8e-11 Score=116.12 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=71.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|.|+++|.+|||||||+++|.+..+.... +++.......+.. . + .-.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~----~s~~~~~~~~~~~-----------------~-----------~-~~~ 47 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV----TSIEPNVATFILN-----------------S-----------E-GKG 47 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc----CcEeecceEEEee-----------------c-----------C-CCC
Confidence 57999999999999999999988653211 1111111100000 0 0 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc-CEEEEEEeCCCCC-CChHHHHHH-HHHh-----CCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV-DRIILLFDAHKLD-ISDEFRRSI-EALR-----GHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a-D~il~VvDa~~~~-~~~~~~~~l-~~l~-----~~~~~vilVl 208 (551)
..+.+|||||+.. +......++..+ +++|+|+|+.... ......+++ ..+. ..+.|+++|+
T Consensus 48 ~~~~l~D~pG~~~-----------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 48 KKFRLVDVPGHPK-----------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred ceEEEEECCCCHH-----------HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 4589999999864 445556677787 9999999998521 111111222 2211 2478999999
Q ss_pred cCCCCCC
Q psy11743 209 NKADMVD 215 (551)
Q Consensus 209 NK~Dl~~ 215 (551)
||+|+..
T Consensus 117 NK~Dl~~ 123 (203)
T cd04105 117 NKQDLFT 123 (203)
T ss_pred cchhhcc
Confidence 9999874
No 253
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.32 E-value=3.4e-11 Score=120.56 Aligned_cols=125 Identities=14% Similarity=0.257 Sum_probs=79.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+||||++|+|+|++.+.++.....+...... .. . . .+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~-~~-~----~----------------~G--------- 85 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMV-SR-T----R----------------AG--------- 85 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE-EE-E----E----------------CC---------
Confidence 4578999999999999999999999865443332222111111 00 0 0 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilV 207 (551)
..+.+|||||+.+... ... +..+.+..++ ...|++|+|.......++..+..+++.+... -.++|+|
T Consensus 86 --~~l~VIDTPGL~d~~~--~~e--~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 --FTLNIIDTPGLIEGGY--IND--QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred --eEEEEEECCCCCchHH--HHH--HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 4699999999987421 111 1222233322 3699999996544324666767777766532 3679999
Q ss_pred EcCCCCCCH
Q psy11743 208 LNKADMVDH 216 (551)
Q Consensus 208 lNK~Dl~~~ 216 (551)
+|++|..++
T Consensus 160 fTh~d~~~p 168 (313)
T TIGR00991 160 LTHAQFSPP 168 (313)
T ss_pred EECCccCCC
Confidence 999998854
No 254
>PRK12739 elongation factor G; Reviewed
Probab=99.31 E-value=1.8e-11 Score=138.16 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+.|+|||||+|+|+...-..... +...+..+...+... ....|..++. ......|.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~--~~v~~~~~~~D~~~~-E~~rgiti~~--~~~~~~~~~--------- 72 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKI--GEVHDGAATMDWMEQ-EQERGITITS--AATTCFWKG--------- 72 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcccc--ccccCCccccCCChh-HhhcCCCccc--eeEEEEECC---------
Confidence 45689999999999999999998643111000 000000001001100 0001111110 000111111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ +...+..++..+|++++|+|+.. +...++..++..+...++|+++++||+|+.
T Consensus 73 --~~i~liDTPG~~~-----------f~~e~~~al~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 73 --HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVS-GVEPQSETVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred --EEEEEEcCCCHHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 5699999999854 55567888999999999999996 888888899999888899999999999998
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 139 ~~ 140 (691)
T PRK12739 139 GA 140 (691)
T ss_pred CC
Confidence 64
No 255
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.30 E-value=8.3e-12 Score=116.94 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|+||||++++|...... .+.||..... .+.+..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~----~~~pT~g~~~~~i~~~~------------------------------- 57 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS----ETIPTIGFNIEEIKYKG------------------------------- 57 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE----EEEEESSEEEEEEEETT-------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc----ccCcccccccceeeeCc-------------------------------
Confidence 4578999999999999999999876531 1233322211 111110
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlN 209 (551)
..+.++|.+|... +......++..+|+++||+|+.+..-..+..+.+..+ . -.+.|+++++|
T Consensus 58 ---~~~~~~d~gG~~~-----------~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 58 ---YSLTIWDLGGQES-----------FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp ---EEEEEEEESSSGG-----------GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred ---EEEEEEecccccc-----------ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 4589999999653 3334455678999999999998533223333333333 2 24789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+.......+. ...+ .+..+.......++.+||.+|.|+
T Consensus 124 K~D~~~~~~~~~i-~~~l-~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 124 KQDLPDAMSEEEI-KEYL-GLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp STTSTTSSTHHHH-HHHT-TGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred cccccCcchhhHH-Hhhh-hhhhcccCCceEEEeeeccCCcCH
Confidence 9998753222221 1111 122232233456788999999887
No 256
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.30 E-value=3.1e-11 Score=127.97 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCC-cEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDD-KIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~-~vilVlNK~Dl~ 214 (551)
..+.++||||+.+ |...+...+..+|++++|+|++. +. ..+..+.+..+...+. ++++|+||+|+.
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~-~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANE-PCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 4689999999743 56666666788999999999996 44 5555566666655554 689999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+........ +..+.........+++++||++|.|+
T Consensus 153 ~~~~~~~~~~~-i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 153 SKERALENYEQ-IKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred cchhHHHHHHH-HHHHhccccCCCCeEEEEECCCCcCH
Confidence 75433221111 11111100122457899999999887
No 257
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=6.3e-12 Score=121.46 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=78.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+|+|.+|+||||++|.|+|.+.+....+..+.|........ .+.+ +
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~---------------------~~~g-----------~ 49 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG---------------------EVDG-----------R 49 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE---------------------EETT-----------E
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee---------------------eecc-----------e
Confidence 6999999999999999999999976544434343333221100 1111 5
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlNK~D 212 (551)
.+++|||||+.+..........++.+.+.......|++|+|++.. .++..+...++.+.. .-+.++||++.+|
T Consensus 50 ~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 50 QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 699999999976432211111112222223346799999999988 578888888877763 3456999999999
Q ss_pred CCCHHHHH
Q psy11743 213 MVDHQQLM 220 (551)
Q Consensus 213 l~~~~~~~ 220 (551)
...+..+.
T Consensus 128 ~~~~~~~~ 135 (212)
T PF04548_consen 128 ELEDDSLE 135 (212)
T ss_dssp GGTTTTHH
T ss_pred ccccccHH
Confidence 88765433
No 258
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.30 E-value=2.4e-11 Score=111.71 Aligned_cols=143 Identities=24% Similarity=0.357 Sum_probs=89.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|..+||||||+++|.+..+. ....+|. +........+ + .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~----------------~---------------~ 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP---ENYIPTIGIDSYSKEVSID----------------G---------------K 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT---SSSETTSSEEEEEEEEEET----------------T---------------E
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc---ccccccccccccccccccc----------------c---------------c
Confidence 5899999999999999999998753 2233332 1111100000 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
.-.+.++||+|... +.......+.++|++++++|..+.........|+..+. ..+.|+++|.||.|
T Consensus 47 ~~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 47 PVNLEIWDTSGQER-----------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEEEETTSGG-----------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred cccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence 03489999999653 44455667899999999999986222222234554443 23579999999999
Q ss_pred CCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+.. ......... . .+.+.+||+++.++
T Consensus 116 ~~~~~~v~~~~~~~~~~~~------~-~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 116 LSDEREVSVEEAQEFAKEL------G-VPYFEVSAKNGENV 149 (162)
T ss_dssp GGGGSSSCHHHHHHHHHHT------T-SEEEEEBTTTTTTH
T ss_pred ccccccchhhHHHHHHHHh------C-CEEEEEECCCCCCH
Confidence 876322211 111111111 1 46788999998887
No 259
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=8.2e-11 Score=120.22 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=90.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc----CCC-----------CCCCCCC---CccceEEEEEeCCCccccCCCCccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER----DFP-----------GIHIGPE---PTTDRFIAVMYDEREGSVPFSPLDKFG 116 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~----~~~-----------~~~~~~~---~tt~~~~~i~~~~~~~~i~g~~~~~~~ 116 (551)
....|+++|+.++|||||||+|.+. +.. .+...++ .||+...+ |.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfv----------P~------- 78 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFV----------PN------- 78 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccc----------cC-------
Confidence 5578999999999999999999998 555 4566677 66666421 11
Q ss_pred ccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccc--------------cchHH----HHHHHHh-ccCEEEE
Q psy11743 117 KFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRG--------------YDFTG----VLEWFAE-RVDRIIL 177 (551)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~--------------~~~~~----~~~~~~~-~aD~il~ 177 (551)
.-..+.....+--.+.+|||+|+.....-...+. .-|.. -++..+. .+|+.|+
T Consensus 79 --------kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgiv 150 (492)
T TIGR02836 79 --------EAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVV 150 (492)
T ss_pred --------cceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEE
Confidence 0111111112224699999999986422111110 01111 1556676 9999999
Q ss_pred EE-eCC-----CCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 178 LF-DAH-----KLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 178 Vv-Da~-----~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
|. |++ ..+..+...+++..|++.++|+++|+||+|-.
T Consensus 151 VtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 151 VTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred EEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 99 874 11456677889999999999999999999944
No 260
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.29 E-value=4.7e-12 Score=110.32 Aligned_cols=112 Identities=25% Similarity=0.428 Sum_probs=65.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+|+|..|||||||+++|++............+..... ..... +. .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~----~---------- 49 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-----------------GD----R---------- 49 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-----------------TE----E----------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-----------------CC----c----------
Confidence 589999999999999999999886300011111111111 00000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---h--CCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---R--GHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~--~~~~~vilVlNK 210 (551)
..+.++|++|... +......++..+|++++|+|.++........+++.++ . ..+.|+++|.||
T Consensus 50 -~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK 117 (119)
T PF08477_consen 50 -QSLQFWDFGGQEE-----------FYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNK 117 (119)
T ss_dssp -EEEEEEEESSSHC-----------HHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-
T ss_pred -eEEEEEecCccce-----------ecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEec
Confidence 2378999999854 2222333478999999999998622112222333333 3 245999999999
Q ss_pred CC
Q psy11743 211 AD 212 (551)
Q Consensus 211 ~D 212 (551)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
No 261
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.29 E-value=3.3e-11 Score=110.92 Aligned_cols=139 Identities=16% Similarity=0.237 Sum_probs=83.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|..|||||||+++++...+... ..|+...+. .+..+ |. .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~---~~~~~~~~~~~i~~~-----------------~~---------------~ 46 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL---ESPEGGRFKKEVLVD-----------------GQ---------------S 46 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC---CCCCccceEEEEEEC-----------------CE---------------E
Confidence 699999999999999999988765321 112211111 01000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.++||+|... ..+...+|++++|+|.++.........++..+.. .+.|+++|.||+|
T Consensus 47 ~~l~i~D~~g~~~----------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 47 HLLLIRDEGGAPD----------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEEEEECCCCCc----------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 2378999999853 1134679999999999863222232455555542 3579999999999
Q ss_pred CCC--HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVD--HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~--~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.. ...+.......+.. .....+.+.+||++|.|+
T Consensus 111 l~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 111 ISESNPRVIDDARARQLCA-----DMKRCSYYETCATYGLNV 147 (158)
T ss_pred hhhcCCcccCHHHHHHHHH-----HhCCCcEEEEecCCCCCH
Confidence 842 22222111111111 111235678999999988
No 262
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.29 E-value=3.9e-11 Score=114.82 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|..+||||||++++++..+. ..+.+|..... .+.+... . +..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~---~~~~~Tig~~~~~k~~~~~~~--~-------------------------~~~ 51 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL---GRPSWTVGCSVDVKHHTYKEG--T-------------------------PEE 51 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCCcceeeeEEEEEEEEcCC--C-------------------------CCC
Confidence 6999999999999999999998753 23334432111 1111100 0 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---------------
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--------------- 199 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--------------- 199 (551)
..-.+.+|||+|... +......++.++|++|+|+|.++.........|+..+..
T Consensus 52 ~~~~l~IwDtaG~e~-----------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 52 KTFFVELWDVGGSES-----------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred cEEEEEEEecCCchh-----------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 002488999999864 555666788999999999999863222233455554432
Q ss_pred -------CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 200 -------HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 200 -------~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.|+++|.||+|+.+........ ...+.+.+......+.+.+++.....+
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~--~~~~~~~ia~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEKESSGNL--VLTARGFVAEQGNAEEINLNCTNGRLL 178 (202)
T ss_pred cccccCCCCceEEEEEECccchhhcccchHH--HhhHhhhHHHhcCCceEEEecCCcccc
Confidence 257999999999997643211100 000111122223345667777665554
No 263
>KOG0087|consensus
Probab=99.28 E-value=1.4e-11 Score=114.15 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=98.6
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+.+..++|+++|.++||||-|+.+++..++. ....+| +.+........+.|..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~---~~SksT----IGvef~t~t~~vd~k~-------------------- 62 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFS---LESKST----IGVEFATRTVNVDGKT-------------------- 62 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccC---cccccc----eeEEEEeeceeecCcE--------------------
Confidence 5567789999999999999999999988763 111112 1111111111111111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCC---CCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-EFRRSIEALRGH---DDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~---~~~vilV 207 (551)
-...||||+|... |+..+..+.+.|-.+++|.|.++ ..+. ....|+..|+.+ ++++++|
T Consensus 63 -----vkaqIWDTAGQER-----------yrAitSaYYrgAvGAllVYDITr-~~Tfenv~rWL~ELRdhad~nivimLv 125 (222)
T KOG0087|consen 63 -----VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITR-RQTFENVERWLKELRDHADSNIVIMLV 125 (222)
T ss_pred -----EEEeeecccchhh-----------hccccchhhcccceeEEEEechh-HHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 2478999999876 67778888999999999999985 3333 336777777754 6789999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+||.+.+.+...-...+. .......+.+||+.+.++
T Consensus 126 GNK~DL~~lraV~te~~k~~A------e~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 126 GNKSDLNHLRAVPTEDGKAFA------EKEGLFFLETSALDATNV 164 (222)
T ss_pred ecchhhhhccccchhhhHhHH------HhcCceEEEecccccccH
Confidence 999999863322111112221 112235577999988887
No 264
>PRK01889 GTPase RsgA; Reviewed
Probab=99.27 E-value=3e-11 Score=125.48 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=97.4
Q ss_pred HHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISD-EFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|.+++|+++. +++.. ....++..+...+.+.++|+||+|+.++.+ +.. ..+..+ ....+++++|+
T Consensus 109 iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~-~~~~~~-----~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKI-AEVEAL-----APGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHH-HHHHHh-----CCCCcEEEEEC
Confidence 358999999999997 36665 445777777788899999999999987522 111 112112 23457889999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
.++.++ ++|...+ . ..-+++++|.+|+||||++|.|
T Consensus 180 ~~g~gl-------------~~L~~~L----------------~---------------~g~~~~lvG~sgvGKStLin~L 215 (356)
T PRK01889 180 LDGEGL-------------DVLAAWL----------------S---------------GGKTVALLGSSGVGKSTLVNAL 215 (356)
T ss_pred CCCccH-------------HHHHHHh----------------h---------------cCCEEEEECCCCccHHHHHHHH
Confidence 988776 3444333 1 1347999999999999999999
Q ss_pred HhCCCC--c-cccc--CCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 327 LERDFP--G-IHIG--PEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 327 ~~~~~~--~-~~v~--~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
++..-. | +... ....+|+...+..-.....++||||+.....
T Consensus 216 ~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l 262 (356)
T PRK01889 216 LGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQL 262 (356)
T ss_pred HHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcc
Confidence 987421 1 1111 1122444333333333456889999987654
No 265
>KOG1145|consensus
Probab=99.27 E-value=4.6e-11 Score=124.22 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=107.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.++|.|.|+|+-..|||||+.+|-+..++... .+--|..+-+ | .+.+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGA--------------------F---------~V~~p~ 199 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGA--------------------F---------TVTLPS 199 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceece--------------------E---------EEecCC
Confidence 46799999999999999999999988764211 1111111100 1 112222
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
. +.++|+||||+.. |..+-.+-+.-+|++++|+.+.+ +..++..+.+...+..+.|+++.+||||.
T Consensus 200 G--~~iTFLDTPGHaA-----------F~aMRaRGA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A~VpiVvAinKiDk 265 (683)
T KOG1145|consen 200 G--KSITFLDTPGHAA-----------FSAMRARGANVTDIVVLVVAADD-GVMPQTLEAIKHAKSANVPIVVAINKIDK 265 (683)
T ss_pred C--CEEEEecCCcHHH-----------HHHHHhccCccccEEEEEEEccC-CccHhHHHHHHHHHhcCCCEEEEEeccCC
Confidence 2 7799999999975 56555666788999999999997 99999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
... ..+++..++. +.|.... -..++++.+||++|.|+
T Consensus 266 p~a-~pekv~~eL~-~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 266 PGA-NPEKVKRELL-SQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred CCC-CHHHHHHHHH-HcCccHHHcCCceeEEEeecccCCCh
Confidence 642 2223332222 2333211 12468899999999998
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.4e-11 Score=123.44 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=104.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC----------CCCCCCCccceEEEEEeCCCccccCCCCcc-cccccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG----------IHIGPEPTTDRFIAVMYDEREGSVPFSPLD-KFGKFGNSFL 123 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~----------~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~-~~~~~g~~~~ 123 (551)
....++++|+..+|||||+-+|+=+--.. .....+..+-.+.+++....+..-.|..++ ....|-
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe---- 81 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE---- 81 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee----
Confidence 34679999999999999999998532100 001122233356666554433222222221 111111
Q ss_pred cceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC------CChHHHHHHHHH
Q psy11743 124 NRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDEFRRSIEAL 197 (551)
Q Consensus 124 ~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~------~~~~~~~~l~~l 197 (551)
.+. ..++|+||||+.+ |...+..-+.+||+.++|+|++... ...+.++.+-.+
T Consensus 82 ---------t~k-~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La 140 (428)
T COG5256 82 ---------TDK-YNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA 140 (428)
T ss_pred ---------cCC-ceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH
Confidence 110 3599999999765 6777777789999999999999621 555665655555
Q ss_pred hCCC-CcEEEEEcCCCCCCH-HHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 198 RGHD-DKIRIVLNKADMVDH-QQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 198 ~~~~-~~vilVlNK~Dl~~~-~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+-.+ ..+|+++||+|+++- ++..+ ....+....|+ .....+.+++|++.|.++.
T Consensus 141 ~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~--~~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 141 RTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGY--NPKDVPFIPISGFKGDNLT 200 (428)
T ss_pred HhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCC--CccCCeEEecccccCCccc
Confidence 5444 458999999999852 22222 22223333444 2224678999999999984
No 267
>KOG0093|consensus
Probab=99.26 E-value=4e-11 Score=104.25 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=97.6
Q ss_pred ccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 50 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 50 ~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
++.++..++++|+|..++|||||+-+.++..+.. .+.. .+|..|..+. +
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~----------afvs-------------------TvGidFKvKT--v 63 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS----------AFVS-------------------TVGIDFKVKT--V 63 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhcccccc----------ceee-------------------eeeeeEEEeE--e
Confidence 4566777899999999999999999999887632 1100 0111111110 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRI 206 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vil 206 (551)
..+.---.+.++||+|.+. +...+..++++|+.+++++|.++.........+.-.++ ..+.++|+
T Consensus 64 -yr~~kRiklQiwDTagqEr-----------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvil 131 (193)
T KOG0093|consen 64 -YRSDKRIKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVIL 131 (193)
T ss_pred -eecccEEEEEEEecccchh-----------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEE
Confidence 0000013589999999875 56778888999999999999986333333345555554 34789999
Q ss_pred EEcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.||||+-+++.+. +.-......||+ ..+..||+.+.++
T Consensus 132 vgnKCDmd~eRvis~e~g~~l~~~LGf-------efFEtSaK~NinV 171 (193)
T KOG0093|consen 132 VGNKCDMDSERVISHERGRQLADQLGF-------EFFETSAKENINV 171 (193)
T ss_pred EecccCCccceeeeHHHHHHHHHHhCh-------HHhhhcccccccH
Confidence 99999997654321 111223334555 2234788877776
No 268
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.26 E-value=3.6e-11 Score=113.79 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=82.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
-+|+|+|.+|+|||||+++|+...+.. ...+|.. .+..-. .+.+ .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~t~~~~~~~~~------------------------------~~~~-~ 47 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE---EYHPTVFENYVTDC------------------------------RVDG-K 47 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCcccceEEEEE------------------------------EECC-E
Confidence 379999999999999999998665421 2222211 111000 0000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~D 212 (551)
...+.++||||.... .......+..+|++++++|..+....... ..++..+.. ...|+++|.||+|
T Consensus 48 ~~~l~i~Dt~g~~~~-----------~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 48 PVQLALWDTAGQEEY-----------ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEEEECCCChhc-----------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 034789999997541 11112245789999999999752211121 235555542 3689999999999
Q ss_pred CCCHHH---------HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQ---------LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~---------~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+... .........+.. .....+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 117 LRQDAVAKEEYRTQRFVPIQQGKRVAK----EIGAKKYMECSALTGEGV 161 (187)
T ss_pred hhhCcccccccccCCcCCHHHHHHHHH----HhCCcEEEEccCCCCCCH
Confidence 853110 000001111111 111235678999999998
No 269
>KOG0095|consensus
Probab=99.26 E-value=3.5e-11 Score=104.67 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-.++|++||..|+|||.|+.+++..-+ +.+.+.|-..--.|.. ++..|..
T Consensus 6 flfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmikt--------------vev~gek------------- 55 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKT--------------VEVNGEK------------- 55 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCC---CCCCCceeeeeEEEEE--------------EEECCeE-------------
Confidence 457899999999999999999998765 4455444221111100 0001100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
-++.||||+|... |.+.++.+.+.|+++++|.|.+..+..+-..+|++.+.. ...--|+|.||+
T Consensus 56 --iklqiwdtagqer-----------frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~ 122 (213)
T KOG0095|consen 56 --IKLQIWDTAGQER-----------FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKI 122 (213)
T ss_pred --EEEEEeeccchHH-----------HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeecccc
Confidence 3589999999875 888999999999999999999853444444566666653 234467899999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..++-+.+...|.... ....+.+||+...++
T Consensus 123 d~~drrevp~qigeefs~~q------dmyfletsakea~nv 157 (213)
T KOG0095|consen 123 DLADRREVPQQIGEEFSEAQ------DMYFLETSAKEADNV 157 (213)
T ss_pred chhhhhhhhHHHHHHHHHhh------hhhhhhhcccchhhH
Confidence 99987776655665554322 223345788776666
No 270
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=1.6e-10 Score=117.79 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=64.0
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc--cccccccceeEEecCCCCc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK--FGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~--~g~~~~~~~~~~~~~~~~l 136 (551)
|+++|.+|||||||+|+|++... .+..-|.+|.+....+.+.... .+...++.+.. +|. ..+..-.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~--~~~~r~~~~~~~~~~~---------~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVE--CPCKELGVSCNPRYGK---------CIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecC--CCchhhhhhhcccccc---------cccCcCc
Confidence 57999999999999999999874 3455555555665544432110 01111111100 000 0011011
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
..+.++||||+..+.. .+..+.......+.+||++++|+|+.
T Consensus 69 v~i~l~D~aGlv~ga~----~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 69 VPVELIDVAGLVPGAH----EGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ceEEEEECCCCCCCcc----chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3489999999975432 12224445556789999999999997
No 271
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.24 E-value=1.1e-10 Score=111.26 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=44.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
.+.+|||+|.... + ...++.++|++++|+|..+ .-+... . .|+..++. .+.|+++|.||+|+
T Consensus 67 ~l~iwDTaG~~~~----------~---~~~~~~~ad~iilv~d~t~-~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 67 SLRLWDTFGDHDK----------D---RRFAYGRSDVVLLCFSIAS-PNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEeCCCChhh----------h---hcccCCCCCEEEEEEECCC-hhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 4899999998641 1 1225689999999999986 323222 2 35555543 36799999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
.+
T Consensus 133 ~~ 134 (195)
T cd01873 133 RY 134 (195)
T ss_pred cc
Confidence 64
No 272
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.23 E-value=2.6e-10 Score=110.36 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=85.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+++++...+. ....||...-. ....... .+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~---~~~~~t~~~~~~~~~~~~~--------------~~~------------ 57 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE---KKYIPTLGVEVHPLKFYTN--------------CGP------------ 57 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEEC--------------CeE------------
Confidence 45689999999999999999877765532 11222221110 0000000 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh--CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR--GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~--~~~~~vilVlN 209 (551)
..+.++||||... +......+...+|++++|+|.++ ..+.. ...++..+. ..+.|+++|+|
T Consensus 58 ----i~i~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~i~lv~n 121 (215)
T PTZ00132 58 ----ICFNVWDTAGQEK-----------FGGLRDGYYIKGQCAIIMFDVTS-RITYKNVPNWHRDIVRVCENIPIVLVGN 121 (215)
T ss_pred ----EEEEEEECCCchh-----------hhhhhHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3488999999653 33344556778999999999985 22221 123333332 23678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.. ...... ....+.+||++|.++
T Consensus 122 K~Dl~~~~~~~~~~-~~~~~~-------~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 122 KVDVKDRQVKARQI-TFHRKK-------NLQYYDISAKSNYNF 156 (215)
T ss_pred CccCccccCCHHHH-HHHHHc-------CCEEEEEeCCCCCCH
Confidence 99986432111111 111111 124578999988887
No 273
>KOG0086|consensus
Probab=99.22 E-value=1.2e-10 Score=101.86 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++++++|+.|+|||.|+..++...+. +...- .+.+..+..-..+.|+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssH----TiGveFgSrIinVGgK------------------------ 56 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSH----TIGVEFGSRIVNVGGK------------------------ 56 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc---ccccc----eeeeeecceeeeecCc------------------------
Confidence 4578999999999999999999988752 11111 1122222111111110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
.-++.||||+|... |..+++.+...|...++|.|+++.+.......|+..++ ..++-++++.||.
T Consensus 57 -~vKLQIWDTAGQEr-----------FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 57 -TVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred -EEEEEEeecccHHH-----------HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChh
Confidence 03588999999875 89999999999999999999986333333344554443 3456688899999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+-+..++.-.-...|. .........+||++|.++
T Consensus 125 DL~~~R~VtflEAs~Fa------qEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 125 DLDPEREVTFLEASRFA------QENELMFLETSALTGENV 159 (214)
T ss_pred hcChhhhhhHHHHHhhh------cccceeeeeecccccccH
Confidence 99876654322223332 333445567899999998
No 274
>KOG0462|consensus
Probab=99.22 E-value=1.1e-10 Score=121.44 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC--------CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG--------IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRF 126 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~--------~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~ 126 (551)
....++||-+...|||||..+|+...-.+ +-+.-+..+.|-+.|. .+.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIk------------------------aQt 114 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIK------------------------AQT 114 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEE------------------------eee
Confidence 34579999999999999999999754211 0111111122211111 010
Q ss_pred eEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEE
Q psy11743 127 QCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRI 206 (551)
Q Consensus 127 ~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vil 206 (551)
..+...+....-+.+|||||+.+ |...+.+.+.-||.+|+|+||.+ +...+....+....+.+..+|.
T Consensus 115 asify~~~~~ylLNLIDTPGHvD-----------Fs~EVsRslaac~G~lLvVDA~q-GvqAQT~anf~lAfe~~L~iIp 182 (650)
T KOG0462|consen 115 ASIFYKDGQSYLLNLIDTPGHVD-----------FSGEVSRSLAACDGALLVVDASQ-GVQAQTVANFYLAFEAGLAIIP 182 (650)
T ss_pred eEEEEEcCCceEEEeecCCCccc-----------ccceehehhhhcCceEEEEEcCc-CchHHHHHHHHHHHHcCCeEEE
Confidence 00101111112389999999987 55556667789999999999997 8888876666666678899999
Q ss_pred EEcCCCCCCH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+... +.+.......| ..+..+++++||++|.++
T Consensus 183 VlNKIDlp~adpe~V~~q~~~lF-------~~~~~~~i~vSAK~G~~v 223 (650)
T KOG0462|consen 183 VLNKIDLPSADPERVENQLFELF-------DIPPAEVIYVSAKTGLNV 223 (650)
T ss_pred eeeccCCCCCCHHHHHHHHHHHh-------cCCccceEEEEeccCccH
Confidence 9999999753 33333333333 556678999999999998
No 275
>KOG0080|consensus
Probab=99.22 E-value=7e-11 Score=104.27 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|++||.+|||||||+-+++...+-. ..|+|- .+...-....+.| ..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~----~~~~tI---GvDFkvk~m~vdg----------~~------------ 59 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD----LHPTTI---GVDFKVKVMQVDG----------KR------------ 59 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc----cCCcee---eeeEEEEEEEEcC----------ce------------
Confidence 445899999999999999999999876522 122221 1111000011111 10
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
.++.||||+|... |...+..+.+.|..+|+|.|.+..+.......|+..+. +.+.-.++|.|
T Consensus 60 ---~KlaiWDTAGqEr-----------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgN 125 (209)
T KOG0080|consen 60 ---LKLAIWDTAGQER-----------FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGN 125 (209)
T ss_pred ---EEEEEEeccchHh-----------hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcc
Confidence 3589999999875 77778889999999999999985222222234444443 33455788999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|.-....+.+.-.-.|.+ ......+.+||++..++
T Consensus 126 KiDkes~R~V~reEG~kfAr------~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 126 KIDKESERVVDREEGLKFAR------KHRCLFIECSAKTRENV 162 (209)
T ss_pred cccchhcccccHHHHHHHHH------hhCcEEEEcchhhhccH
Confidence 99976444333322222221 12234567899998887
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.21 E-value=9.4e-11 Score=108.97 Aligned_cols=115 Identities=29% Similarity=0.358 Sum_probs=65.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+.|+|+|+.|+|||+|+..|.........++.++. .... ++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n----~~~~-------------------------------~~~~ 46 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENN----IAYN-------------------------------VNNS 46 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEE----EECC-------------------------------GSST
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCC----ceEE-------------------------------eecC
Confidence 3578999999999999999999988543221111111 0100 0111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHh---------CCCCc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALR---------GHDDK 203 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---------~~~~~ 203 (551)
--..+.+||+||+..-. ...... ....+.+|+||+|+.. ......+.++.|. ....|
T Consensus 47 ~~~~~~lvD~PGH~rlr----------~~~~~~~~~~~~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~~~~~~~p 114 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLR----------SKLLDELKYLSNAKGIIFVVDSST--DQKELRDVAEYLYDILSDTEVQKNKPP 114 (181)
T ss_dssp CGTCECEEEETT-HCCC----------HHHHHHHHHHGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHCCTT--E
T ss_pred CCCEEEEEECCCcHHHH----------HHHHHhhhchhhCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhhhccCCCC
Confidence 11569999999997621 112222 5789999999999973 2233333333332 35788
Q ss_pred EEEEEcCCCCCCH
Q psy11743 204 IRIVLNKADMVDH 216 (551)
Q Consensus 204 vilVlNK~Dl~~~ 216 (551)
++|+.||.|+...
T Consensus 115 iLIacNK~Dl~~A 127 (181)
T PF09439_consen 115 ILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEE-TTSTT-
T ss_pred EEEEEeCcccccc
Confidence 9999999999863
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=116.51 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE---EEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~---~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....+|+|+|..|||||||+++|++..+. ....+|.... ..+.++....... .+. +
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~---~~~~pTIG~d~~ik~I~~~~~~~~~~-----~ik--~----------- 77 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSI---ARPPQTIGCTVGVKHITYGSPGSSSN-----SIK--G----------- 77 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcc---cccCCceeeeEEEEEEEECCcccccc-----ccc--c-----------
Confidence 45689999999999999999999987652 2233332111 1112211000000 000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----------
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---------- 200 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---------- 200 (551)
+....-.+.||||+|... +......++.++|++|+|+|.++.........|++.+...
T Consensus 78 -d~~k~v~LqIWDTAGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~ 145 (334)
T PLN00023 78 -DSERDFFVELWDVSGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSG 145 (334)
T ss_pred -cCCceEEEEEEECCCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence 000002388999999864 5666677889999999999998632222334555555432
Q ss_pred -----CCcEEEEEcCCCCCCH
Q psy11743 201 -----DDKIRIVLNKADMVDH 216 (551)
Q Consensus 201 -----~~~vilVlNK~Dl~~~ 216 (551)
..|++||.||+|+...
T Consensus 146 ~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 146 GPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred cccCCCCcEEEEEECcccccc
Confidence 3689999999999753
No 278
>KOG0073|consensus
Probab=99.20 E-value=2.1e-10 Score=101.86 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=94.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..+|+++|..|+||||++++|++.+.. ...||.- .+..+.+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~----~i~pt~gf~Iktl~~~~------------------------------- 59 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD----TISPTLGFQIKTLEYKG------------------------------- 59 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc----ccCCccceeeEEEEecc-------------------------------
Confidence 3578999999999999999999998832 1122211 111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
..+.++|-.|... +.+....+.+.+|++++|+|.++.....+....+..+ +-.+.|++++.|
T Consensus 60 ---~~L~iwDvGGq~~-----------lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 60 ---YTLNIWDVGGQKT-----------LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN 125 (185)
T ss_pred ---eEEEEEEcCCcch-----------hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence 4589999999865 5677788999999999999997522222223333322 235789999999
Q ss_pred CCCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+... +++..+. .+..+......+++-+|+.+|.++
T Consensus 126 k~dl~~~l~~~~i~~~~-----~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 126 KQDLPGALSLEEISKAL-----DLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred cCcCccccCHHHHHHhh-----CHHHhccccCceEEEEeccccccH
Confidence 9999742 3322211 122222344567889999998876
No 279
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=3.9e-10 Score=102.69 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=98.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCC-----CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGI-----HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQC 128 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~-----~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~ 128 (551)
+...+|+|+|+.++||||++.++.......+ .......+...++.. ||.....
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D------------------~g~~~~~---- 65 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMD------------------FGSIELD---- 65 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeec------------------ccceEEc----
Confidence 4568999999999999999999998763211 112211111112222 2221111
Q ss_pred EecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEE
Q psy11743 129 SLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIV 207 (551)
Q Consensus 129 ~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilV 207 (551)
.+ ..+.++||||+.. |.-.+....++++.+++++|.+. +.+.....+++.+.... .|+++.
T Consensus 66 ----~~--~~v~LfgtPGq~R-----------F~fm~~~l~~ga~gaivlVDss~-~~~~~a~~ii~f~~~~~~ip~vVa 127 (187)
T COG2229 66 ----ED--TGVHLFGTPGQER-----------FKFMWEILSRGAVGAIVLVDSSR-PITFHAEEIIDFLTSRNPIPVVVA 127 (187)
T ss_pred ----Cc--ceEEEecCCCcHH-----------HHHHHHHHhCCcceEEEEEecCC-CcchHHHHHHHHHhhccCCCEEEE
Confidence 11 3589999999975 66667777899999999999996 66666678888877666 999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||.|+.+...... +...+. +.. -..|++.++|..+.+.
T Consensus 128 ~NK~DL~~a~ppe~-i~e~l~-~~~----~~~~vi~~~a~e~~~~ 166 (187)
T COG2229 128 INKQDLFDALPPEK-IREALK-LEL----LSVPVIEIDATEGEGA 166 (187)
T ss_pred eeccccCCCCCHHH-HHHHHH-hcc----CCCceeeeecccchhH
Confidence 99999985422212 122221 111 2457777888766655
No 280
>KOG0394|consensus
Probab=99.20 E-value=5.1e-11 Score=107.79 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=90.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|.++|.+|||||||+|+++..++... ...| .|..|+.+- ++++ +
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q---ykaT--------------------------IgadFltKe--v~Vd-~ 55 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ---YKAT--------------------------IGADFLTKE--VQVD-D 55 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH---hccc--------------------------cchhheeeE--EEEc-C
Confidence 457999999999999999999999876311 0001 111111111 1111 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH----HHHHhC---CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS----IEALRG---HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~----l~~l~~---~~~~vilV 207 (551)
-.-.+.||||+|... |.+.-..+.+.||++++|+|...+........| +..... ...|.+++
T Consensus 56 ~~vtlQiWDTAGQER-----------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVil 124 (210)
T KOG0394|consen 56 RSVTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVIL 124 (210)
T ss_pred eEEEEEEEecccHHH-----------hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEE
Confidence 113478999999875 555556677999999999998853222222223 222221 24689999
Q ss_pred EcCCCCCCH--HHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDH--QQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+|.-.. ..+ ......++.+.| ..|.+.+||+.+.++
T Consensus 125 GNKiD~~~~~~r~VS~~~Aq~WC~s~g------nipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 125 GNKIDVDGGKSRQVSEKKAQTWCKSKG------NIPYFETSAKEATNV 166 (210)
T ss_pred cccccCCCCccceeeHHHHHHHHHhcC------CceeEEecccccccH
Confidence 999999652 111 222223332222 457788999988887
No 281
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.20 E-value=2.8e-10 Score=123.78 Aligned_cols=136 Identities=23% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC--CccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE--PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~--~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....|+|+|++++|||||+++|+...-.+...+.. -.+.+.+...+...+. ..|.+.... .+.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~-----------~rgisi~~~--~~~~ 75 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEK-----------QRGISITTS--VMQF 75 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHH-----------hcCCcEEEE--EEEE
Confidence 456789999999999999999997533111111100 0000111100110000 001100000 0011
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
+.. -..+.+|||||+.+ |...+..++..+|++|+|+|+.. ++..+...+++.++..+.|+++++||+
T Consensus 76 ~~~-~~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~PiivviNKi 142 (527)
T TIGR00503 76 PYR-DCLVNLLDTPGHED-----------FSEDTYRTLTAVDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPIFTFMNKL 142 (527)
T ss_pred eeC-CeEEEEEECCChhh-----------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEECc
Confidence 100 04589999999954 66677788899999999999986 777777778887777889999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9863
No 282
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.19 E-value=1.5e-10 Score=123.65 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=72.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CC------hHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-IS------DEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~------~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+++|||||+.+ |...+...+..+|++++|+|+.. + +. .+..+.+..+...+.| +++++
T Consensus 85 ~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 85 YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 4689999999865 78888888999999999999986 4 21 4555666666667775 68899
Q ss_pred cCCCCCCH----HHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH----QQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~----~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+. ... .+.+...+...++ .....+++++||++|.|+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~--~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGY--NPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcCC--CcccceEEEEecccccccc
Confidence 99998631 111 2223333333343 2223578999999999883
No 283
>KOG0091|consensus
Probab=99.19 E-value=1.1e-10 Score=103.43 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=97.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+++.+||.+-||||+|+.+++..+++.++ .|| . |..|..++.++. .
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaels---dpt----v----------------------gvdffarlie~~--p 54 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELS---DPT----V----------------------GVDFFARLIELR--P 54 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccC---CCc----c----------------------chHHHHHHHhcC--C
Confidence 34578999999999999999999998876553 222 1 111111111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-C---CCc-EEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-H---DDK-IRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~---~~~-vilVl 208 (551)
..--++.+|||+|... |.+.++.+..++-.+++|+|.++-...+....|+..... . .++ ..+|.
T Consensus 55 g~riklqlwdtagqer-----------frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVG 123 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQER-----------FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVG 123 (213)
T ss_pred CcEEEEEEeeccchHH-----------HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence 1113589999999875 888999999999999999999863222333444443321 1 222 56788
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+|+....++...-++.+. .......+.+||++|.++
T Consensus 124 hKsDL~SqRqVt~EEaEklA------a~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 124 HKSDLQSQRQVTAEEAEKLA------ASHGMAFVETSAKNGCNV 161 (213)
T ss_pred cccchhhhccccHHHHHHHH------HhcCceEEEecccCCCcH
Confidence 99999876655333222221 223346788999999988
No 284
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=2.1e-10 Score=123.47 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+...+|+|+|++|+||||++|+|+|++.+.+......||. ...+.. . +.+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~-~--------------------idG-------- 165 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEG-L--------------------VQG-------- 165 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEE-E--------------------ECC--------
Confidence 3446899999999999999999999986554433222333 221110 0 001
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vil 206 (551)
..+.+|||||+.+..... ....++.+.+..++. .+|++|+|+.........++..+++.+.. .-..+||
T Consensus 166 ---~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 166 ---VKIRVIDTPGLKSSASDQ-SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred ---ceEEEEECCCCCccccch-HHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 459999999999753211 111223444544544 58999999876532333355566666642 2467999
Q ss_pred EEcCCCCCCH
Q psy11743 207 VLNKADMVDH 216 (551)
Q Consensus 207 VlNK~Dl~~~ 216 (551)
|++.+|.+++
T Consensus 242 VFThgD~lpp 251 (763)
T TIGR00993 242 TLTHAASAPP 251 (763)
T ss_pred EEeCCccCCC
Confidence 9999999963
No 285
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=6.5e-10 Score=114.29 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC--C-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD--F-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~--~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+..|+|+|.+|+|||||||+|.|-. - ...++|...||...+...+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~------------------------------- 82 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH------------------------------- 82 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-------------------------------
Confidence 35789999999999999999997632 1 1133343233333332221
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
|-..++++||.||+....-. ..+|.+.. -..+.|.+|++.+.+ ++..+..++..+++.++++.+|-+|+
T Consensus 83 --p~~pnv~lWDlPG~gt~~f~----~~~Yl~~~--~~~~yD~fiii~s~r---f~~ndv~La~~i~~~gK~fyfVRTKv 151 (376)
T PF05049_consen 83 --PKFPNVTLWDLPGIGTPNFP----PEEYLKEV--KFYRYDFFIIISSER---FTENDVQLAKEIQRMGKKFYFVRTKV 151 (376)
T ss_dssp --SS-TTEEEEEE--GGGSS------HHHHHHHT--TGGG-SEEEEEESSS-----HHHHHHHHHHHHTT-EEEEEE--H
T ss_pred --CCCCCCeEEeCCCCCCCCCC----HHHHHHHc--cccccCEEEEEeCCC---CchhhHHHHHHHHHcCCcEEEEEecc
Confidence 22246999999999763211 01122211 257899888887654 67888899999999999999999999
Q ss_pred CC-C-----------CHHHHHHHHHHH-HHHcccccCCCCceEEEecccCCCC
Q psy11743 212 DM-V-----------DHQQLMRVYGAL-MWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 212 Dl-~-----------~~~~~~~~~~~~-~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
|. + .++++.+.+... ...|.. .+.+.++++.+|++.-..
T Consensus 152 D~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k-~gv~~P~VFLVS~~dl~~ 203 (376)
T PF05049_consen 152 DSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK-AGVSEPQVFLVSSFDLSK 203 (376)
T ss_dssp HHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC-TT-SS--EEEB-TTTTTS
T ss_pred cccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH-cCCCcCceEEEeCCCccc
Confidence 96 1 122222222222 223332 245667888899875433
No 286
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.17 E-value=2.2e-10 Score=124.62 Aligned_cols=136 Identities=24% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC--CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP--EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~--~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....|+|+|++|+|||||.++|+...-.+...+. +.++...+...+.+.+ .+.|.+.......+..
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E-----------~~rgiSi~~~~~~~~~ 76 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEME-----------KQRGISVTSSVMQFPY 76 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHH-----------HhhCCceeeeeEEEEE
Confidence 45678999999999999999999853211111110 0000111100000000 0011111111000100
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
.. ..+.+|||||+.+ |...+..++..+|++++|+|+.+ +...+...+++.+...+.|+++++||+
T Consensus 77 -~~--~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~iPiiv~iNK~ 141 (526)
T PRK00741 77 -RD--CLINLLDTPGHED-----------FSEDTYRTLTAVDSALMVIDAAK-GVEPQTRKLMEVCRLRDTPIFTFINKL 141 (526)
T ss_pred -CC--EEEEEEECCCchh-----------hHHHHHHHHHHCCEEEEEEecCC-CCCHHHHHHHHHHHhcCCCEEEEEECC
Confidence 01 4589999999865 56667778899999999999986 777777788888888899999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 142 D~~~ 145 (526)
T PRK00741 142 DRDG 145 (526)
T ss_pred cccc
Confidence 9864
No 287
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.16 E-value=3.7e-10 Score=115.53 Aligned_cols=167 Identities=25% Similarity=0.270 Sum_probs=108.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+||-+...|||||+..||.+.- +-...+....| +|...+-. .+.|...+.+...+..+.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSG--tf~~~e~v~ER---vMDSnDlE----------kERGITILaKnTav~~~~-- 67 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSG--TFREREEVAER---VMDSNDLE----------KERGITILAKNTAVNYNG-- 67 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhcc--ccccccchhhh---hcCccchh----------hhcCcEEEeccceeecCC--
Confidence 45799999999999999999998752 11111111111 11111100 011111111111111111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |-..+.+.+.-.|.+++++||.. +..++.+-+++.....+.+.|+|+||+|...
T Consensus 68 -~~INIvDTPGHAD-----------FGGEVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 -TRINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred -eEEEEecCCCcCC-----------ccchhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence 4699999999986 55567777889999999999997 8888887788877778899999999999975
Q ss_pred --HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 --HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 --~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++.+.+..-.+|-.++---..-..|++|-|+..|..-
T Consensus 135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 3444444445666666533334568999999988743
No 288
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=8.1e-11 Score=108.75 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=90.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+++|+++|.+|+||||++|+|.+.. ...++..+++|+. .....++..+.++||||..........+++|.. .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~---~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV---L 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH---H
Confidence 6789999999999999999999886 3556777777752 234557777899999999877555555566542 1
Q ss_pred hhhhhccccCc-------cccc---------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH-
Q psy11743 383 RFQCSLVNSPV-------LKGK---------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR- 445 (551)
Q Consensus 383 ~~~~~~~~~~~-------~~~~---------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~- 445 (551)
+....+..+|. ..+. .......+.++|+||||+... .....+.....+.+.++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~ 146 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK----------DSKTMKEFKKEIRRKLPF 146 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc----------cHHHHHHHHHHHHhhccc
Confidence 22222233332 1111 112235677999999998211 00112223344444443
Q ss_pred -hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 446 -KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 446 -~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.|++.+ +++.+ +++++.+..+
T Consensus 147 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 147 LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 23455545 66776 7777766654
No 289
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=8.8e-10 Score=115.75 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=66.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC-CC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS-PV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~-~~ 135 (551)
.+|+|||.||||||||+|+|++.+.. +..-|.+|.+....+.+.... ++...++.+. +.....+.. ..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~--~~~~r~~~~~--------~~~~~~~~~~~~ 70 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVE--CPCKELGVKC--------NPRNGKCIDGTR 70 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccC--Cchhhhhhhh--------ccccccccCCcc
Confidence 47999999999999999999998752 344566666666654442211 1110111000 000000000 01
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
.-.+.++||||+..+... +..+.......+++||++++|+|+.
T Consensus 71 ~~~i~i~D~aGl~~ga~~----g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHE----GRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeeEEEEEcCCcCCCccc----hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 134889999999764321 2224445556689999999999997
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.12 E-value=5.7e-10 Score=128.00 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=86.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC--
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-- 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-- 132 (551)
....|+|+|+.++|||||+++|+...-.......+.++ ...+...+ .-.|.++. .....+...
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~D~~~~E-~~rgiti~----------~~~~~~~~~~~ 82 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR----FTDTRADE-QERGITIK----------STGISLYYEHD 82 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee----ecccchhh-Hhhcceee----------ccceEEEeecc
Confidence 34589999999999999999999865322111111111 00111100 00010000 000000000
Q ss_pred -----CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 133 -----SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 133 -----~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..--..++++||||+.+ |...+..++..+|++++|+|+.. ++..+...+++.+...++|++++
T Consensus 83 ~~~~~~~~~~~i~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~~p~iv~ 150 (836)
T PTZ00416 83 LEDGDDKQPFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVE-GVCVQTETVLRQALQERIRPVLF 150 (836)
T ss_pred cccccCCCceEEEEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCC-CcCccHHHHHHHHHHcCCCEEEE
Confidence 00013489999999975 67778888999999999999996 88888888998888888999999
Q ss_pred EcCCCCC
Q psy11743 208 LNKADMV 214 (551)
Q Consensus 208 lNK~Dl~ 214 (551)
+||+|+.
T Consensus 151 iNK~D~~ 157 (836)
T PTZ00416 151 INKVDRA 157 (836)
T ss_pred EEChhhh
Confidence 9999997
No 291
>KOG0448|consensus
Probab=99.11 E-value=1.8e-09 Score=115.33 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=116.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc---ccCC--CCcc--ccccccc-------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG---SVPF--SPLD--KFGKFGN------- 120 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~---~i~g--~~~~--~~~~~g~------- 120 (551)
...+|+|.|++|+||||++|+++.+++ ++.+.++||..|..|...+... .++| ...+ .+...+.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~kl--LP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKL--LPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhh--CcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 457899999999999999999999997 6889999999998876543211 1233 0011 1110000
Q ss_pred ccccceeEEecCCC---Cc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH
Q psy11743 121 SFLNRFQCSLVNSP---VL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA 196 (551)
Q Consensus 121 ~~~~~~~~~~~~~~---~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~ 196 (551)
.-......++.|.+ +| ..+.+||.||+.... +....+......+|++++|+.+.+ .++....+++..
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~ 256 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHK 256 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCcc-HhHHHHHHHHHH
Confidence 00111233444433 34 469999999998632 235556667789999999999997 788888888888
Q ss_pred HhCCCCcEEEEEcCCCCCCHH-HHHHHHHHHHHHccccc-CCCCceEEEecccC
Q psy11743 197 LRGHDDKIRIVLNKADMVDHQ-QLMRVYGALMWSLGKVL-QTPEVARVYIGSFW 248 (551)
Q Consensus 197 l~~~~~~vilVlNK~Dl~~~~-~~~~~~~~~~~~l~~l~-~~~~~~~v~iSa~~ 248 (551)
..+.+..+.|+.||||....+ +-++.+......|+-.. ......+.||||..
T Consensus 257 vs~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 257 VSEEKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred hhccCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 776644577888999998542 22222222233333211 12233568888543
No 292
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.10 E-value=4.4e-10 Score=127.06 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=111.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCC---CchhhhhhhH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ---FRPLDKFGNS 379 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~---~~~~~~~~~~ 379 (551)
..+|+++|+||+||||++|.|.|.. ..+++.||+|. .....+++.++.++||||+.+-... .+.-++....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR---QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999999999999887 47899999995 2335567888999999999875321 1222333333
Q ss_pred HHhhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++. ...+|+. ......+..+|.|+|+||+|+. ++.......+.+.+.+.
T Consensus 80 ~l~-----~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~------------~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 80 YIL-----SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA------------EKQNIRIDIDALSARLG 142 (772)
T ss_pred HHh-----ccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhh------------hccCcHHHHHHHHHHhC
Confidence 321 1122321 1123344578899999999982 11222223344555553
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhcc
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQH 522 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ +++.+.+.+..+.. . ....-|+ .+..+.+.++...+..... ..++++...+.|+.
T Consensus 143 --~pVvpiSA~~g~GIdeL~~~I~~~~~~~--~-~~~~~yp--~~le~~I~~l~~~L~e~ia----e~~~RwLAiKlLEg 211 (772)
T PRK09554 143 --CPVIPLVSTRGRGIEALKLAIDRHQANE--N-VELVHYP--QPLLNEADSLAKVMPSDIP----LQQRRWLGLQMLEG 211 (772)
T ss_pred --CCEEEEEeecCCCHHHHHHHHHHhhhcc--C-CcccCCC--HHHHHHHHHHHHHhhhhhc----cccchHHHHHHhcC
Confidence 566666 78888 99999988765311 0 1111122 2333444444444422111 12467777777776
Q ss_pred C
Q psy11743 523 H 523 (551)
Q Consensus 523 ~ 523 (551)
.
T Consensus 212 D 212 (772)
T PRK09554 212 D 212 (772)
T ss_pred c
Confidence 4
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.09 E-value=7.3e-10 Score=113.14 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=56.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++||||+|+..... . ....||++++|+++.. .+......... ....-++|+||+|+.+.
T Consensus 149 ~d~viieT~Gv~qs~~---------~-----i~~~aD~vlvv~~p~~---gd~iq~~k~gi--~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSET---------A-----VAGMVDFFLLLQLPGA---GDELQGIKKGI--MELADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchh---------H-----HHHhCCEEEEEecCCc---hHHHHHHHhhh--hhhhheEEeehhcccch
Confidence 4689999999985221 1 3567999999987432 12221111101 11234899999999875
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
....+........+.... ....+|++++||.++.|+
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 433222222222233211 112368999999999988
No 294
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.08 E-value=1.2e-09 Score=109.76 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC-CCCCc--cceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI-GPEPT--TDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~-~~~~t--t~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+.|+|+|.+|+|||||||.|++........ .+.+. ..+...+..... .+. .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~l~---------------e 58 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTV----------ELE---------------E 58 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEE----------EEE---------------E
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEE----------Eec---------------c
Confidence 3689999999999999999999987532210 00000 000000000000 000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccc--cccc-hHHHHHHHH-------------hccCEEEEEEeCCCCCCChHHHHHHHH
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVD--RGYD-FTGVLEWFA-------------ERVDRIILLFDAHKLDISDEFRRSIEA 196 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~--~~~~-~~~~~~~~~-------------~~aD~il~VvDa~~~~~~~~~~~~l~~ 196 (551)
+..-..+++|||||+.+....... .-.+ +.++...++ .+.|++|++++++..++.+.+.+.++.
T Consensus 59 ~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~ 138 (281)
T PF00735_consen 59 NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKR 138 (281)
T ss_dssp TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHH
T ss_pred CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHH
Confidence 111146999999999864321100 0000 001111111 568999999999865889999999988
Q ss_pred HhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 197 LRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 197 l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
|.+. .++|-|+.|+|.+..+++...
T Consensus 139 Ls~~-vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 139 LSKR-VNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HTTT-SEEEEEESTGGGS-HHHHHHH
T ss_pred hccc-ccEEeEEecccccCHHHHHHH
Confidence 8754 779999999999998776443
No 295
>KOG1144|consensus
Probab=99.08 E-value=1.8e-09 Score=115.52 Aligned_cols=132 Identities=24% Similarity=0.327 Sum_probs=87.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|.++|+|+..+|||-|+..|-+.++. .+..-+....+...|-+.+. +. ..+..+..++.....
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVq---egeaggitqqIgAt~fp~~n-i~-e~tk~~~~~~K~~~k---------- 538 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQ---EGEAGGITQQIGATYFPAEN-IR-EKTKELKKDAKKRLK---------- 538 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccc---cccccceeeeccccccchHH-HH-HHHHHHHhhhhhhcC----------
Confidence 5699999999999999999999998752 21111111111111111000 00 000011111111000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
...+.+|||||+.+ |...-......||++|+|+|..+ ++.++..+-+..|+..+.|+|+.+||+|.+
T Consensus 539 -vPg~lvIdtpghEs-----------FtnlRsrgsslC~~aIlvvdImh-GlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 539 -VPGLLVIDTPGHES-----------FTNLRSRGSSLCDLAILVVDIMH-GLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred -CCeeEEecCCCchh-----------hhhhhhccccccceEEEEeehhc-cCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 13589999999876 55555566789999999999997 899999999999999999999999999986
No 296
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.3e-10 Score=113.53 Aligned_cols=106 Identities=25% Similarity=0.283 Sum_probs=73.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~Dl~~ 215 (551)
+++.+.||||+.. |.+.+-.-+.-||+.++++|++. ++.++.++..-...-.+ +.+++.+||+||++
T Consensus 86 RkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd 153 (431)
T COG2895 86 RKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD 153 (431)
T ss_pred ceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhCCcEEEEEEeeecccc
Confidence 7899999999975 66666666789999999999996 88777765443333333 45889999999997
Q ss_pred H-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcc
Q psy11743 216 H-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVH 254 (551)
Q Consensus 216 ~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~ 254 (551)
- ++..+.+.+.+..+..-.+......+++||+.|.++..
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 33333334443332221233334678999999998843
No 297
>PRK13351 elongation factor G; Reviewed
Probab=99.07 E-value=1.5e-09 Score=122.88 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|..|+|||||+++|+...-.....+. .........+...+ ..+|.........+...
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~--v~~~~~~~d~~~~e-----------~~r~~ti~~~~~~~~~~-- 71 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE--VEDGTTVTDWMPQE-----------QERGITIESAATSCDWD-- 71 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCcccccc--ccCCcccCCCCHHH-----------HhcCCCcccceEEEEEC--
Confidence 3468999999999999999999975321111100 00000000000000 00111000000011110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
...+.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+.
T Consensus 72 -~~~i~liDtPG~~d-----------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 -NHRINLIDTPGHID-----------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred -CEEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 14689999999865 56677888999999999999986 677777777777888889999999999988
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 139 ~~ 140 (687)
T PRK13351 139 GA 140 (687)
T ss_pred CC
Confidence 53
No 298
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.06 E-value=1.6e-09 Score=124.48 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=59.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+..++..+|.+++|+|+.. +...+...+++.+...++|+++++||+|..
T Consensus 98 ~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCC-CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 3479999999975 77788888999999999999996 888888888998888899999999999998
No 299
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.06 E-value=1.5e-09 Score=105.00 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=78.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCc-cceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-TDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~t-t~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|..|||||||+|+|.+..+. ....+| ...+....... ++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~---------------~~~--------------- 52 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP---EGYPPTIGNLDPAKTIEP---------------YRR--------------- 52 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc---ccCCCceeeeeEEEEEEe---------------CCC---------------
Confidence 78999999999999999999998763 111122 11111100000 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
-..+.+|||+|..+ +......+...++++++++|... .........+...+.. ...|+++|.||+
T Consensus 53 ~~~~~~~Dt~gq~~-----------~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 53 NIKLQLWDTAGQEE-----------YRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred EEEEEeecCCCHHH-----------HHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 03488999999875 66677788899999999999985 2233333455555554 258999999999
Q ss_pred CCCCHH
Q psy11743 212 DMVDHQ 217 (551)
Q Consensus 212 Dl~~~~ 217 (551)
|+....
T Consensus 122 Dl~~~~ 127 (219)
T COG1100 122 DLFDEQ 127 (219)
T ss_pred ccccch
Confidence 998764
No 300
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.5e-09 Score=111.40 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.+|||||+.+ |.-.+.+.+..|...|+|+||++ +...+...-.-...+++..++-|+||+||...
T Consensus 77 ~lnlIDTPGHVD-----------FsYEVSRSLAACEGalLvVDAsQ-GveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 77 VLNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred EEEEcCCCCccc-----------eEEEehhhHhhCCCcEEEEECcc-chHHHHHHHHHHHHHcCcEEEEeeecccCCCCC
Confidence 489999999986 33334556778999999999997 88777644333444678899999999999753
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.+.+... .+.+....+.+||++|.|+
T Consensus 145 pervk~eIe~~-------iGid~~dav~~SAKtG~gI 174 (603)
T COG0481 145 PERVKQEIEDI-------IGIDASDAVLVSAKTGIGI 174 (603)
T ss_pred HHHHHHHHHHH-------hCCCcchheeEecccCCCH
Confidence 3333333222 2556667788999999998
No 301
>KOG0079|consensus
Probab=99.03 E-value=5.4e-10 Score=97.34 Aligned_cols=151 Identities=16% Similarity=0.219 Sum_probs=98.2
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+..+..+|+|.+|+|||||+-++....+.+..+ .|+..-..|.. ..++| ..
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYi---tTiGvDfkirT----v~i~G----------~~----------- 56 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYI---TTIGVDFKIRT----VDING----------DR----------- 56 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceE---EEeeeeEEEEE----eecCC----------cE-----------
Confidence 3445678999999999999999998776532211 11111111111 11112 11
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK 210 (551)
-.+.|+||+|... |...+..+.+..+.+++|.|.++......-..|++.++.. ..|-++|.||
T Consensus 57 ----VkLqIwDtAGqEr-----------Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK 121 (198)
T KOG0079|consen 57 ----VKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNK 121 (198)
T ss_pred ----EEEEEeecccHHH-----------HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccC
Confidence 3588999999864 7778888999999999999999733333446777777643 4678999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|......+.. -.+..|.++. + ...+.+|++...++
T Consensus 122 ~d~~~RrvV~t-~dAr~~A~~m--g---ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 122 NDDPERRVVDT-EDARAFALQM--G---IELFETSAKENENV 157 (198)
T ss_pred CCCccceeeeh-HHHHHHHHhc--C---chheehhhhhcccc
Confidence 99986543322 2344455555 2 23456899888777
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.7e-09 Score=103.04 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=105.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccc-cccc--cceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFG-NSFL--NRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g-~~~~--~~~~~~~~ 131 (551)
+...|.++|+-..|||||..+|.|--.. .-+.+..+.-.+-+-|.+. .+.. --+.+. +.+. ..|..|..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~--~hseElkRgitIkLGYAd~--~i~k----C~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTD--RHSEELKRGITIKLGYADA--KIYK----CPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeee--chhHHHhcCcEEEeccccC--ceEe----CCCCCCCcccccCCCCCCCCC
Confidence 4568999999999999999999985310 0011111111111111111 0000 000011 1111 12333445
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-CCcEEEEEcC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-DDKIRIVLNK 210 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~~~vilVlNK 210 (551)
+.++++.+.|||.||++- .+..+..-..--|..|+|++|+.+-..++..+.+-.+.-. -+.+++|-||
T Consensus 81 ~~~l~R~VSfVDaPGHe~-----------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNK 149 (415)
T COG5257 81 ETELVRRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNK 149 (415)
T ss_pred CccEEEEEEEeeCCchHH-----------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecc
Confidence 557789999999999864 3445555556679999999999644455555554444322 3569999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+|+++.++..+.|.+... ++.+ ....|++++||..+.++
T Consensus 150 IDlV~~E~AlE~y~qIk~---FvkGt~Ae~aPIIPiSA~~~~NI 190 (415)
T COG5257 150 IDLVSRERALENYEQIKE---FVKGTVAENAPIIPISAQHKANI 190 (415)
T ss_pred cceecHHHHHHHHHHHHH---HhcccccCCCceeeehhhhccCH
Confidence 999998876665554322 2222 34568999999888877
No 303
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=3.5e-09 Score=105.03 Aligned_cols=76 Identities=25% Similarity=0.158 Sum_probs=49.8
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhc--cCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER--VDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~--aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK 210 (551)
.+.+|||||..+....+ .........+.. ++++++|+|++. ..+..+.....++. +.++|+++|+||
T Consensus 98 ~~~~~d~~g~~~~~~~~-----~~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 98 DYVLVDTPGQMELFAFR-----ESGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CEEEEeCCcHHHHHhhh-----HHHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 68999999986632210 112223333333 899999999985 44555533333332 568999999999
Q ss_pred CCCCCHHHH
Q psy11743 211 ADMVDHQQL 219 (551)
Q Consensus 211 ~Dl~~~~~~ 219 (551)
+|+.+..+.
T Consensus 172 ~D~~~~~~~ 180 (253)
T PRK13768 172 ADLLSEEEL 180 (253)
T ss_pred HhhcCchhH
Confidence 999976543
No 304
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.00 E-value=1.3e-09 Score=123.50 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+++.+.+.+.|.++|+||+|...
T Consensus 86 ~~i~liDTPG~~~-----------f~~~~~~al~~aD~~llVvda~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 86 YLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVCAVE-GVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred eEEEEEeCCCccc-----------cHHHHHHHHHhcCEEEEEEecCC-CCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 4589999999975 55667788999999999999986 7777777777777777889999999999863
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.00 E-value=1.3e-09 Score=92.54 Aligned_cols=132 Identities=21% Similarity=0.177 Sum_probs=85.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
++++||+.|+|||||+|+|-|.+... .+..+|.+.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly---------kKTQAve~~d----------------------------------- 38 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY---------KKTQAVEFND----------------------------------- 38 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh---------cccceeeccC-----------------------------------
Confidence 68999999999999999999987421 0111222211
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
=-.|||||-.-... .+...+......+|++++|..+.+ +-+.....++. -..+|+|-|++|+|+.++.
T Consensus 39 -~~~IDTPGEy~~~~-------~~Y~aL~tt~~dadvi~~v~~and-~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 39 -KGDIDTPGEYFEHP-------RWYHALITTLQDADVIIYVHAAND-PESRFPPGFLD---IGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred -ccccCCchhhhhhh-------HHHHHHHHHhhccceeeeeecccC-ccccCCccccc---ccccceEEEEecccccchH
Confidence 13589999764221 145556666789999999998885 22221112222 1246799999999999776
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++...-. +... ....+++.+|+....|+
T Consensus 107 dI~~~~~-~L~e------aGa~~IF~~s~~d~~gv 134 (148)
T COG4917 107 DISLVKR-WLRE------AGAEPIFETSAVDNQGV 134 (148)
T ss_pred hHHHHHH-HHHH------cCCcceEEEeccCcccH
Confidence 6544322 2211 22447888999877776
No 306
>KOG0097|consensus
Probab=98.99 E-value=3.5e-09 Score=91.42 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=92.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++-.|+|..|+|||.|+..++.+++ +.+-|.+. .+..+..-.++. |+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphti-----gvefgtriievs----------gqk-------------- 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTI-----GVEFGTRIIEVS----------GQK-------------- 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCccc-----ceecceeEEEec----------CcE--------------
Confidence 46789999999999999999999886 33333221 111111000011 110
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~D 212 (551)
-++.+|||+|... |..+++.+.+.+...++|.|......-.....|+...+.. +.-++++.||+|
T Consensus 60 -iklqiwdtagqer-----------fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkad 127 (215)
T KOG0097|consen 60 -IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 127 (215)
T ss_pred -EEEEEeecccHHH-----------HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhh
Confidence 3588999999865 8889999999999999999998522222223444443433 344888999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+-...++.-.-...|. .......+..||++|.++
T Consensus 128 le~qrdv~yeeak~fa------eengl~fle~saktg~nv 161 (215)
T KOG0097|consen 128 LESQRDVTYEEAKEFA------EENGLMFLEASAKTGQNV 161 (215)
T ss_pred hhhcccCcHHHHHHHH------hhcCeEEEEecccccCcH
Confidence 9765443211112221 223345667899999988
No 307
>KOG0395|consensus
Probab=98.98 E-value=3.5e-09 Score=100.69 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=90.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce----EEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~----~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+|+++|.+|||||+|...+++..+... ..||... ...+. + .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~---y~ptied~y~k~~~v~-~------------------~----------- 49 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED---YDPTIEDSYRKELTVD-G------------------E----------- 49 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc---cCCCccccceEEEEEC-C------------------E-----------
Confidence 46899999999999999999999886322 2222211 11110 0 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilV 207 (551)
. -.+.|+||+|..+ +......++..+|..++|++..+.........+.+.+. ....|+++|
T Consensus 50 --~--~~l~ilDt~g~~~-----------~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlV 114 (196)
T KOG0395|consen 50 --V--CMLEILDTAGQEE-----------FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILV 114 (196)
T ss_pred --E--EEEEEEcCCCccc-----------ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEE
Confidence 0 2377999999433 55566778899999999999986333333345555552 235699999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+|+....++...-...+ . .....+.+.+||+...++
T Consensus 115 GNK~Dl~~~R~V~~eeg~~l---a---~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 115 GNKCDLERERQVSEEEGKAL---A---RSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EEcccchhccccCHHHHHHH---H---HhcCCcEEEeeccCCcCH
Confidence 99999986433322111111 1 112234677899877665
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=1.8e-09 Score=110.95 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=68.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|||.||||||||+|+|++.+ +.+...|.+|.+....+..-.+. .++.+. ..+-|....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~------r~~~l~-----------~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDP------RLDKLA-----------EIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccc------cchhhH-----------HhcCCcccc
Confidence 689999999999999999999988 45666677787776655442211 000000 000111111
Q ss_pred -cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 137 -KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 137 -~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
..+.++||||+..+... +..+.......++++|++++|+|+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~----g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASK----GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCCh----HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 35899999999864322 1223445566789999999999986
No 309
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.95 E-value=4.7e-09 Score=119.26 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-C
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-S 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~ 133 (551)
....|+++|+.++|||||+.+|+...-.+.....+.+ ....+...+. - .|.........+... .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~----~~~D~~~~E~-~----------rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQ----LALDFDEEEQ-A----------RGITIKAANVSMVHEYE 83 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcc----eecCccHHHH-H----------hhhhhhccceEEEEEec
Confidence 3467999999999999999999976432111111110 0001111000 0 000000000000000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
.--..+++|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+.+.+.|.++++||+|.
T Consensus 84 ~~~~~i~liDtPG~~d-----------f~~~~~~~l~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~~~~iv~iNK~D~ 151 (731)
T PRK07560 84 GKEYLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVDAVE-GVMPQTETVLRQALRERVKPVLFINKVDR 151 (731)
T ss_pred CCcEEEEEEcCCCccC-----------hHHHHHHHHHhcCEEEEEEECCC-CCCccHHHHHHHHHHcCCCeEEEEECchh
Confidence 0013589999999976 66678888999999999999986 77788878888766677899999999998
Q ss_pred C
Q psy11743 214 V 214 (551)
Q Consensus 214 ~ 214 (551)
.
T Consensus 152 ~ 152 (731)
T PRK07560 152 L 152 (731)
T ss_pred h
Confidence 6
No 310
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.95 E-value=2.3e-09 Score=106.80 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=65.7
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC-cc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV-LK 137 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~-l~ 137 (551)
|+|||.||||||||+|+|++.+. .+...|.+|.+...++..-.+ ..++.+.. +.-|... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d------~r~~~l~~-----------~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPD------ERLDKLAE-----------IVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEecc------chhhhHHH-----------HhCCceeeee
Confidence 58999999999999999999886 455667777777665443221 11111110 0000000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
.+.++||||+..+... +..........++++|++++|+|+..
T Consensus 63 ~i~lvD~pGl~~~a~~----~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASK----GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCch----hhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 4899999999865432 12233445566789999999999863
No 311
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.95 E-value=4.3e-09 Score=99.98 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|.|.+..+ ...++..+++|+......-+.++.++||||.....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKN-LARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 578999999999999999999999753 25677788888765543335678999999976543
No 312
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.94 E-value=5.9e-09 Score=111.81 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=88.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
.+++++++|.||+||||++|+|.+.+ ...+++.|+||+. ..+.+++..+.++||||+..+ ...++.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~---~~~ie~~gi--- 285 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEE--RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET---DDEVEKIGI--- 285 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC---ccHHHHHHH---
Confidence 45799999999999999999999987 3578899999963 335567888999999998753 233444433
Q ss_pred hhhhhhccccCcc-------cccccc-------cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVL-------KGKVLQ-------TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~~~-------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+. .+.+.. ...++.++|+||+|++... . .. .. ..
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~------------~---~~-----~~-~~ 344 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI------------D---LE-----EE-NG 344 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccc------------h---hh-----hc-cC
Confidence 2333344444432 111111 2356779999999983110 0 00 11 22
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+.+.+ ++|.+ +++++.+.+...
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 334444 77888 888888877653
No 313
>PRK12740 elongation factor G; Reviewed
Probab=98.94 E-value=2.3e-09 Score=121.05 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.. +.......++..+...++|+++|+||+|+..
T Consensus 60 ~~i~liDtPG~~~-----------~~~~~~~~l~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 60 HKINLIDTPGHVD-----------FTGEVERALRVLDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 4589999999864 55667778899999999999986 6777777777778778899999999999875
No 314
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.93 E-value=5.2e-09 Score=97.49 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhh---HHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGN---SFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~---~~~ 381 (551)
..+-|+++|++||||||+||+|.|++- -+.+|..||.|+..-...-+....++|-||.--.+-+.+--++++. .++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN-LARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc-eeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999751 1899999999986554433444889999987655544444455544 222
Q ss_pred hhhhhhcccc----Ccccccccc---------cccceeEEEecccCC
Q psy11743 382 NRFQCSLVNS----PVLKGKVLQ---------TPEVARVYIGSFWDQ 415 (551)
Q Consensus 382 ~~~~~~~~~~----~~~~~~~~~---------~~~~~~v~~~~~wd~ 415 (551)
..-. .+... |.-.+.... ...++.++|.||.|+
T Consensus 102 ~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 102 EKRA-NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred hhch-hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2111 12211 222222222 255677888999998
No 315
>KOG0458|consensus
Probab=98.93 E-value=9.8e-09 Score=108.32 Aligned_cols=170 Identities=20% Similarity=0.276 Sum_probs=99.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCC------------CCCCCCCCccceEEEEEeCCCccccCCCCcc-cccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFP------------GIHIGPEPTTDRFIAVMYDEREGSVPFSPLD-KFGKFGNS 121 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~------------~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~-~~~~~g~~ 121 (551)
....++++|..++|||||+-+|+-.--. ....+... ..+.+++....+..-.|...+ ....|.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~S--f~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSS--FAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcc--eeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 4578999999999999999998852100 01112222 233333333222211221111 000011
Q ss_pred cccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC------CCCChHHHHHHH
Q psy11743 122 FLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK------LDISDEFRRSIE 195 (551)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~------~~~~~~~~~~l~ 195 (551)
++ -..++|+|+||+.+ |...+..-+..||+.++|+|++. +....+.++.+.
T Consensus 252 ----------s~--~~~~tliDaPGhkd-----------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ 308 (603)
T KOG0458|consen 252 ----------SK--SKIVTLIDAPGHKD-----------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL 308 (603)
T ss_pred ----------cC--ceeEEEecCCCccc-----------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH
Confidence 11 15699999999765 55555556688999999999984 223445566666
Q ss_pred HHhCCCC-cEEEEEcCCCCCC--HHHHHHH---HHHHH-HHcccccCCCCceEEEecccCCCCCc
Q psy11743 196 ALRGHDD-KIRIVLNKADMVD--HQQLMRV---YGALM-WSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 196 ~l~~~~~-~vilVlNK~Dl~~--~~~~~~~---~~~~~-~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
.++..++ .+|+++||+|+++ .+...+. +.... ...|+ ....+..+++|++.|+++-
T Consensus 309 llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf--~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 309 LLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF--KESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc--ccCCcceEecccccCCccc
Confidence 6665554 4899999999995 2222222 22222 22344 4445577889999999983
No 316
>KOG0410|consensus
Probab=98.93 E-value=4.3e-09 Score=103.46 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...|.|++||.+|+|||||+|+|++..... .+.-..|-|... ....+|+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~------------------------------h~a~Lps 224 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTL------------------------------HSAHLPS 224 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchh------------------------------hhccCCC
Confidence 356999999999999999999999765420 111111111100 0112233
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-------EEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-------IRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-------vil 206 (551)
. ..+.+.||-|+.+.-...+-. -.+.+..-+..||+++.|+|.+++....+...++..++..+.| ++=
T Consensus 225 g--~~vlltDTvGFisdLP~~Lva---AF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 225 G--NFVLLTDTVGFISDLPIQLVA---AFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred C--cEEEEeechhhhhhCcHHHHH---HHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 3 558999999998743322111 1334455578899999999999855555556677777776654 455
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|-||+|..+..- ...+ ...+.+|+++|.|.
T Consensus 300 VdnkiD~e~~~~---------------e~E~-n~~v~isaltgdgl 329 (410)
T KOG0410|consen 300 VDNKIDYEEDEV---------------EEEK-NLDVGISALTGDGL 329 (410)
T ss_pred hccccccccccC---------------cccc-CCccccccccCccH
Confidence 778887654321 0111 12567999999887
No 317
>PTZ00258 GTP-binding protein; Provisional
Probab=98.92 E-value=5e-09 Score=109.01 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|||.||||||||+|+|++.+. .+...|.+|.+....+..-.+. .++.+.. +.-+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~------r~~~l~~-----------~~~~~~ 81 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDE------RFDWLCK-----------HFKPKS 81 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccc------hhhHHHH-----------HcCCcc
Confidence 446899999999999999999998874 4556677777776655432211 0000000 000101
Q ss_pred C-ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 135 V-LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 135 ~-l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
. ..++.++||||+..+... +..+.......++++|++++|+|+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~----g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASE----GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcc----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 135899999999864332 1224445666789999999999986
No 318
>KOG1532|consensus
Probab=98.91 E-value=9.8e-09 Score=98.78 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=46.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHH---HHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRS---IEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~---l~~l~~~~~~vilVlNK~D 212 (551)
....+|||||..+...-.-+. .-+.+.+ +-...-+|++|+|..... .+.....+ ...+-+...|.|+|+||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsG-sIIte~l--ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASG-SIITETL--ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCc-cchHhhH--hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 358899999987643221111 1111111 124567899999976411 12222222 2345578999999999999
Q ss_pred CCCHH
Q psy11743 213 MVDHQ 217 (551)
Q Consensus 213 l~~~~ 217 (551)
+.+.+
T Consensus 193 v~d~~ 197 (366)
T KOG1532|consen 193 VSDSE 197 (366)
T ss_pred ccccH
Confidence 98764
No 319
>KOG2486|consensus
Probab=98.91 E-value=5.9e-09 Score=100.73 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=99.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..|.+++.|++|+|||||+|.++..... .....+++.....+.+ |- .
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~--~~t~k~K~g~Tq~in~-----------------f~----v--------- 181 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI--ADTSKSKNGKTQAINH-----------------FH----V--------- 181 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh--hhhcCCCCccceeeee-----------------ee----c---------
Confidence 45699999999999999999999987642 1111112222222111 10 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
..++.+||.||+.... -..+...++...+..++ ++-=.+++++|+.. ++...|...++++.+++.|.-+|+||
T Consensus 182 --~~~~~~vDlPG~~~a~-y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv-~i~~~D~~~i~~~ge~~VP~t~vfTK 257 (320)
T KOG2486|consen 182 --GKSWYEVDLPGYGRAG-YGFELPADWDKFTKSYLLERENLVRVFLLVDASV-PIQPTDNPEIAWLGENNVPMTSVFTK 257 (320)
T ss_pred --cceEEEEecCCccccc-CCccCcchHhHhHHHHHHhhhhhheeeeeeeccC-CCCCCChHHHHHHhhcCCCeEEeeeh
Confidence 1569999999955421 11222234566666554 33445778889985 78888889999999999999999999
Q ss_pred CCCCCHHH-----HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQ-----LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||....-. ...-+...+..+.........|-+++|+.++.|.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Gr 304 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGR 304 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCc
Confidence 99764321 0001111122233311222234457899888876
No 320
>KOG0081|consensus
Probab=98.90 E-value=1.7e-09 Score=95.34 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=94.1
Q ss_pred cccCCCCEEEEEeccCCChHHHHHHHHhcCCCC---CCCCCCCccceEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 51 ADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG---IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 51 ~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~---~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
.+.+...+.+.+|.+|||||||+-..+...+.. ..++.. .+.+ .+.|........| ..+ +
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID-FreK--rvvY~s~gp~g~g----------r~~--r-- 66 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGID-FREK--RVVYNSSGPGGGG----------RGQ--R-- 66 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecc-cccc--eEEEeccCCCCCC----------cce--E--
Confidence 344455677889999999999998777655411 000000 0000 1111110000000 000 0
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCc
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDK 203 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~ 203 (551)
-.+.+|||+|... |.+.+..+...|=..|+++|.++....-..+.|+..++-+ +-.
T Consensus 67 ---------ihLQlWDTAGQER-----------FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PD 126 (219)
T KOG0081|consen 67 ---------IHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPD 126 (219)
T ss_pred ---------EEEeeeccccHHH-----------HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCC
Confidence 3478999999875 7888889999999999999998522222234566655532 344
Q ss_pred EEEEEcCCCCCCHHHHHHHHHH-HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 204 IRIVLNKADMVDHQQLMRVYGA-LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~~~~~~~~~~~-~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++++.||+|+.+...+.+.... +.... ..|.+.+||.+|.++
T Consensus 127 ivlcGNK~DL~~~R~Vs~~qa~~La~ky-------glPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 127 IVLCGNKADLEDQRVVSEDQAAALADKY-------GLPYFETSACTGTNV 169 (219)
T ss_pred EEEEcCccchhhhhhhhHHHHHHHHHHh-------CCCeeeeccccCcCH
Confidence 8999999999876555433222 22222 236678999999987
No 321
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.89 E-value=7e-09 Score=106.76 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=46.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEe-cCCCccccCCceeecCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMY-DEREGSVPGNALVVDPK 367 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~-~~~~~~l~dt~gi~~~~ 367 (551)
..|+++|.||+||||++|.|.+.. ..++.+|.||+... +.+ +...+.+.||||+....
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~---~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga 220 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC---CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCC
Confidence 469999999999999999999876 56899999996322 344 45678999999998644
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.3e-08 Score=98.88 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=71.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
+.+..||+||+.+ |.+.+..-+.+.|..|+|+.|.+ +..++.++.+-..++.+.| +++.+||+|+++
T Consensus 75 rhyahVDcPGHaD-----------YvKNMItgAaqmDgAILVVsA~d-GpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 75 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred ceEEeccCCChHH-----------HHHHHhhhHHhcCccEEEEEcCC-CCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 6789999999976 66667777788999999999997 7777777777777788886 667789999998
Q ss_pred HHHHHHHHHHHHHHcccccCCC--CceEEEeccc
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTP--EVARVYIGSF 247 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~--~~~~v~iSa~ 247 (551)
++++.+..+.+...|-..++.+ ..|++.-||+
T Consensus 143 d~ellelVemEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence 7776554443333322222333 4466666664
No 323
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=7.8e-09 Score=110.63 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=91.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+|+|.||+|||||+|.|.+.. ..++.+|.||+.. .+.+++..+.+.||||+........ .++..|+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak---pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~---gLg~~fLr 232 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK---PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK---GLGLDFLR 232 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC---ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh---HHHHHHHH
Confidence 4579999999999999999999986 5679999999632 2456778899999999975432221 23333332
Q ss_pred hhhhhccccCccc----------cc-----------cc--------------ccccceeEEEecccCCCCccchhhhhhh
Q psy11743 383 RFQCSLVNSPVLK----------GK-----------VL--------------QTPEVARVYIGSFWDQPLVHDVNRRLFE 427 (551)
Q Consensus 383 ~~~~~~~~~~~~~----------~~-----------~~--------------~~~~~~~v~~~~~wd~~~~~~~~~~l~~ 427 (551)
.+.++|++. +. .+ .-.+.+.|+|+||+|++-. ..
T Consensus 233 ----hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----~e--- 301 (500)
T PRK12296 233 ----HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----RE--- 301 (500)
T ss_pred ----HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh----HH---
Confidence 233333211 00 00 1124678999999998411 00
Q ss_pred hhccChhhHHHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHHHHHHhh
Q psy11743 428 DRSSTSNSVQAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEIYKQIQR 474 (551)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~ 474 (551)
..+.+...+. ...+++.+ +++.+ ++|+..+.+..+.+++
T Consensus 302 --------l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 302 --------LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred --------HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 1112222232 12355555 78888 9999999998876654
No 324
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.88 E-value=5.3e-09 Score=96.75 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=42.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCC-CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDER-EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~-~~~l~dt~gi~~ 365 (551)
.|+++|.+|+||||++|.|.+.. ..++..|++|+.. ....++. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~---~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK---PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC---ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 48999999999999999999876 3567777777421 2344555 788999999864
No 325
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.87 E-value=2.6e-08 Score=114.77 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=55.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.. |..........+|++++|+|+.+ ++..+..+.+..+...+.|+++|+||+|+.+
T Consensus 526 p~i~fiDTPGhe~-----------F~~lr~~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 526 PGLLFIDTPGHEA-----------FTSLRKRGGSLADLAVLVVDINE-GFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CcEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 3589999999754 44444455678999999999986 7888888888888888899999999999974
No 326
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.8e-08 Score=102.14 Aligned_cols=156 Identities=20% Similarity=0.184 Sum_probs=109.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+..|+...|||||+.++.|..-...+. .-+.|.|-- ..|-+ .++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg--~~y~~---------------~~d--------------- 49 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLG--FYYRK---------------LED--------------- 49 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeee--eEecc---------------CCC---------------
Confidence 47889999999999999999876321111 111222221 11111 111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.|||.||+.+ +.+.+...+...|..++|+|+.+ ++..+..+.+..+.-.+++ .++|+||+|..
T Consensus 50 -~~~~fIDvpgh~~-----------~i~~miag~~~~d~alLvV~~de-Gl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 50 -GVMGFIDVPGHPD-----------FISNLLAGLGGIDYALLVVAADE-GLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred -CceEEeeCCCcHH-----------HHHHHHhhhcCCceEEEEEeCcc-CcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 3589999999975 66677777889999999999986 8888888888888766666 59999999999
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcc
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSL 275 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~ 275 (551)
++..+.+........+. .+..+++.+|+.+|+|+ ++|...+.++
T Consensus 117 d~~r~e~~i~~Il~~l~----l~~~~i~~~s~~~g~GI-------------~~Lk~~l~~L 160 (447)
T COG3276 117 DEARIEQKIKQILADLS----LANAKIFKTSAKTGRGI-------------EELKNELIDL 160 (447)
T ss_pred cHHHHHHHHHHHHhhcc----cccccccccccccCCCH-------------HHHHHHHHHh
Confidence 87766555555444443 34456788999999998 5666666444
No 327
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=5.4e-08 Score=99.14 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++||||||..... ...+..+|.++++.++. ...+...+...+. .+|.++|+||+|+...
T Consensus 127 ~D~viidT~G~~~~e--------------~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE--------------VDIANMADTFVVVTIPG---TGDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh--------------hHHHHhhceEEEEecCC---ccHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 468999999976421 12356789999886543 2233333333332 5788999999999875
Q ss_pred HHHHHHHHH---HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGA---LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~---~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
......... ....+..-.....++++.+||+++.|+
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi 226 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGI 226 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCH
Confidence 432111111 111111100112246899999999988
No 328
>KOG2655|consensus
Probab=98.86 E-value=2.4e-08 Score=101.45 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=89.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.++++|+.|.|||||||.|++.++..-...+++.......+....... .-.++.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~-----------------------~iee~g~ 77 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKV-----------------------EIEENGV 77 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeee-----------------------eecCCCe
Confidence 37899999999999999999999865322111211111110000000000 0001111
Q ss_pred ccCeEEEeCCCCCCCcccccccc--cc-hHHHHHHHH-------------hccCEEEEEEeCCCCCCChHHHHHHHHHhC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRG--YD-FTGVLEWFA-------------ERVDRIILLFDAHKLDISDEFRRSIEALRG 199 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~--~~-~~~~~~~~~-------------~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 199 (551)
-..+++|||||+.+..+....-. .+ +.++...++ .+.|++|+.+.+..-++.+.+..+++.+..
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~ 157 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK 157 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc
Confidence 14689999999988644321100 00 111222222 378999999999866799999888888764
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHH
Q psy11743 200 HDDKIRIVLNKADMVDHQQLMRVYGALM 227 (551)
Q Consensus 200 ~~~~vilVlNK~Dl~~~~~~~~~~~~~~ 227 (551)
...+|-|+-|+|.+.++++...-...+
T Consensus 158 -~vNiIPVI~KaD~lT~~El~~~K~~I~ 184 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDELNQFKKRIR 184 (366)
T ss_pred -cccccceeeccccCCHHHHHHHHHHHH
Confidence 467899999999999887655433333
No 329
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.86 E-value=2.2e-08 Score=106.92 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
.+++++++|.|||||||++|+|++.. ...++..|+||+.. .+.+++.++.++||||+.... ..+++++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~--~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~gi--- 273 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD--RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERLGI--- 273 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC--CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHHHH---
Confidence 56899999999999999999999987 46788999999732 355678888999999997532 33444443
Q ss_pred hhhhhhccccCcc-------cccc--------cccccceeEEEecccCC
Q psy11743 382 NRFQCSLVNSPVL-------KGKV--------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~--------~~~~~~~~v~~~~~wd~ 415 (551)
.++...+..+|+. .+.+ .....++.++|+||+|+
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDL 322 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccC
Confidence 2333344444432 1111 11235678999999998
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.86 E-value=2.1e-08 Score=97.20 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=55.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||.|-|+...+ -....-+|.+++|+-+.. ..+...-..+++. .=++|+||+|...
T Consensus 122 ~D~IiiETVGvGQsE--------------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD~~g 181 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE--------------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKADRPG 181 (266)
T ss_dssp -SEEEEEEESSSTHH--------------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHHH
T ss_pred CCEEEEeCCCCCccH--------------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCChHH
Confidence 458999999987622 123478999999998763 1222222334443 3489999999654
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+...+.........+.+|++.+||.++.|+
T Consensus 182 A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 182 ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 4444333333332222212334579999999998887
No 331
>KOG0088|consensus
Probab=98.86 E-value=4.5e-09 Score=92.65 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-+++|+++|..=||||||+=+....++..-+. .|- ..+|.++-.- +. +
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl---sTl--------------------------QASF~~kk~n--~e-d 59 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL---STL--------------------------QASFQNKKVN--VE-D 59 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH---HHH--------------------------HHHHhhcccc--cc-c
Confidence 45899999999999999999998877521110 010 0001110000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
.--.+.||||+|... |...--.+...++.+|+|+|.++.+.....+.|...++ .....++||.||+
T Consensus 60 ~ra~L~IWDTAGQEr-----------fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQER-----------FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHh-----------hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcc
Confidence 003589999999875 33333345689999999999986333333355555554 4567899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+-....+... .++.+.- ..++..+.+||+.+.|+
T Consensus 129 DLEeeR~Vt~q-eAe~YAe-----svGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 129 DLEEERQVTRQ-EAEAYAE-----SVGALYMETSAKDNVGI 163 (218)
T ss_pred cHHHhhhhhHH-HHHHHHH-----hhchhheecccccccCH
Confidence 99765544221 1222211 11234466899888887
No 332
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=9.4e-09 Score=101.90 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEe---cCCCccccCCceeecCCCCC-chhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY---DEREGSVPGNALVVDPKKQF-RPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~---~~~~~~l~dt~gi~~~~~~~-~~~~~~~~~~ 380 (551)
.-+|+++.|.|||||||+++.|.+.+ .-|.++|=||+++++.+ +...+.++||||+.++.... ..+++-+..-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 56899999999999999999999998 78999999999888665 56678899999999976543 3456655543
Q ss_pred Hhhhhhhccc-cCc--ccccccc-----------cccceeEEEecccCC
Q psy11743 381 LNRFQCSLVN-SPV--LKGKVLQ-----------TPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~-~~~--~~~~~~~-----------~~~~~~v~~~~~wd~ 415 (551)
|......+.- -|. ..|-+.. ....+.|+|.||.|.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3332222221 011 1121111 123567888999998
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=6.4e-08 Score=97.56 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=86.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCC----CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGI----HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~----~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+.|+++|+.|.|||||+|.|++...... ...+.+ +.+...+.... .. +. +
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~--~~--------l~--e------------ 77 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEG-TSPTLEIKITK--AE--------LE--E------------ 77 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCccccc-CCcceEEEeee--ee--------ee--c------------
Confidence 47899999999999999999999843111 011110 11111111100 00 00 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccc--cccc-hHHHHHHHH--------------hccCEEEEEEeCCCCCCChHHHHHH
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVD--RGYD-FTGVLEWFA--------------ERVDRIILLFDAHKLDISDEFRRSI 194 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~--~~~~-~~~~~~~~~--------------~~aD~il~VvDa~~~~~~~~~~~~l 194 (551)
+.+-..+++|||||+.+.....-. .-.+ +..+...++ .+.|++|+.+.++.-++.+.+.+.+
T Consensus 78 -~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M 156 (373)
T COG5019 78 -DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM 156 (373)
T ss_pred -CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH
Confidence 111145999999999885432110 0000 111122222 4679999999988768999998888
Q ss_pred HHHhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 195 EALRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 195 ~~l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
..+.+ ...+|-|+.|+|.+..+++...
T Consensus 157 k~ls~-~vNlIPVI~KaD~lT~~El~~~ 183 (373)
T COG5019 157 KRLSK-RVNLIPVIAKADTLTDDELAEF 183 (373)
T ss_pred HHHhc-ccCeeeeeeccccCCHHHHHHH
Confidence 88865 3668999999999998876554
No 334
>KOG0461|consensus
Probab=98.84 E-value=3.6e-08 Score=97.56 Aligned_cols=157 Identities=21% Similarity=0.173 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+.++|...+|||||..+|..-.. +...-.|+.++..++ .. -+|.|.+++++-
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiT-LD------------------------LGFS~~~v~~pa 62 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGIT-LD------------------------LGFSTMTVLSPA 62 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCccccccee-Ee------------------------ecceeeeccccc
Confidence 6799999999999999999986431 112223333332222 11 123333333321
Q ss_pred ------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 136 ------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 136 ------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
-.++++||+||+.+ ..+.+.....-.|+.++|+|+.. +...+..+.+-.-....++.++|+|
T Consensus 63 rLpq~e~lq~tlvDCPGHas-----------LIRtiiggaqiiDlm~lviDv~k-G~QtQtAEcLiig~~~c~klvvvin 130 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHAS-----------LIRTIIGGAQIIDLMILVIDVQK-GKQTQTAECLIIGELLCKKLVVVIN 130 (522)
T ss_pred ccCccccceeEEEeCCCcHH-----------HHHHHHhhhheeeeeeEEEehhc-ccccccchhhhhhhhhccceEEEEe
Confidence 14689999999875 33444445567899999999996 7766665555443344577899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH----cccccCCCCceEEEecccCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWS----LGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~----l~~l~~~~~~~~v~iSa~~g~ 250 (551)
|+|.+++.+....+...-.. +.........|++.+|+..|.
T Consensus 131 kid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~ 175 (522)
T KOG0461|consen 131 KIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGY 175 (522)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCc
Confidence 99999764322222111111 111112234689999998773
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.84 E-value=4.8e-09 Score=96.36 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...|+++|++|||||||+|+|++.....+...|+.|+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~ 140 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW 140 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE
Confidence 467899999999999999999998876666666655543
No 336
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.84 E-value=3.7e-08 Score=95.75 Aligned_cols=128 Identities=22% Similarity=0.298 Sum_probs=71.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|+.++||||..+.+.+.-.+.-...-++|.+.-..-... .| . .
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~----------------~~-----~-----------~ 48 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF----------------LS-----F-----------L 48 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC----------------TT-----S-----------C
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec----------------CC-----C-----------c
Confidence 58999999999999999999765321111223444332111000 01 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH---HHh--CCCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE---ALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~---~l~--~~~~~vilVlNK~D 212 (551)
.+.+||.||....... .+..+.....++++++|+|+|+...+.......+.. .+. .-+..+.+.++|+|
T Consensus 49 ~l~iwD~pGq~~~~~~------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D 122 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMEN------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMD 122 (232)
T ss_dssp EEEEEEE-SSCSTTHT------THTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CC
T ss_pred EEEEEEcCCccccccc------cccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecc
Confidence 5899999999863321 022344556799999999999994344333333322 232 34677999999999
Q ss_pred CCCHHHHHHHH
Q psy11743 213 MVDHQQLMRVY 223 (551)
Q Consensus 213 l~~~~~~~~~~ 223 (551)
++.++...+.+
T Consensus 123 ~l~~~~r~~~~ 133 (232)
T PF04670_consen 123 LLSEDEREEIF 133 (232)
T ss_dssp CS-HHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99876544433
No 337
>KOG0075|consensus
Probab=98.83 E-value=2.8e-08 Score=86.75 Aligned_cols=145 Identities=23% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+.++|--++|||||+|.+....+. ....||..- ...+.. |+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tk------------------gn-------------- 64 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTK------------------GN-------------- 64 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEecc------------------Cc--------------
Confidence 356899999999999999988765531 112222211 111111 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH-HHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE-ALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~-~l~---~~~~~vilVlNK 210 (551)
-.+.++|.||.-. |......+...++++++++|+.+++-.+..++-+. .+. -.++|++++.||
T Consensus 65 --vtiklwD~gGq~r-----------frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 --VTIKLWDLGGQPR-----------FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred --eEEEEEecCCCcc-----------HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 3478999999864 67778889999999999999997544443333333 332 258999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+...-.. .+...++|.. ....++.-+.+|++...++
T Consensus 132 ~d~~~AL~~----~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 132 IDLPGALSK----IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred ccCcccccH----HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 998753221 1223334442 2344556678899877766
No 338
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.82 E-value=9.4e-09 Score=105.70 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=46.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC-CCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE-REGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~-~~~~l~dt~gi~~~~ 367 (551)
-..|+++|.||+|||||+|+|.+.. ..++.+|.||+... +.+++ ..+.++||||+....
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~---~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC---ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCC
Confidence 3469999999999999999999876 56888888885222 44455 788999999997543
No 339
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.82 E-value=1.1e-08 Score=93.40 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=40.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC-CcccccCC----CcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPE----PTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~-~~~~v~~~----~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+.+++++|++||||||++|+|++..- .--.|+.. -.||++..+..-+....++||||+.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 46899999999999999999999842 11122222 345555554444667899999999987754
No 340
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.9e-08 Score=111.67 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+....|.|+|+..+|||||..+|+-..-.+.. .+.+++..+...+.+.+ .+.|-........+....
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~E-----------qeRGITI~saa~s~~~~~ 74 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQE-----------QERGITITSAATTLFWKG 74 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHH-----------HhcCCEEeeeeeEEEEcC
Confidence 34568999999999999999999964321111 22222221111111110 011211111111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
+ ..+++|||||+.+ |...+..++.-+|.+++|+|+.. +...+...+.+.+.+.+.|.++++||+|.
T Consensus 75 ~--~~iNlIDTPGHVD-----------Ft~EV~rslrvlDgavvVvdave-GV~~QTEtv~rqa~~~~vp~i~fiNKmDR 140 (697)
T COG0480 75 D--YRINLIDTPGHVD-----------FTIEVERSLRVLDGAVVVVDAVE-GVEPQTETVWRQADKYGVPRILFVNKMDR 140 (697)
T ss_pred c--eEEEEeCCCCccc-----------cHHHHHHHHHhhcceEEEEECCC-CeeecHHHHHHHHhhcCCCeEEEEECccc
Confidence 1 4599999999987 78889999999999999999996 89999999999999999999999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 141 ~~a 143 (697)
T COG0480 141 LGA 143 (697)
T ss_pred ccc
Confidence 854
No 341
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.81 E-value=4.3e-09 Score=98.81 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
.+.++|+++|.+|+||||++|.|.+..+ ...+++.+++|+......-+..+.++||||.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK-LARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCcceEEEEEEeCCcEEEEeCCCCcccc
Confidence 4678999999999999999999999863 24567788888754432223478899999976543
No 342
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.80 E-value=1.2e-08 Score=105.74 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEe-cCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMY-DEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~-~~~~~~l~dt~gi~~ 365 (551)
..++|+++|.||+||||++|+|.+.+ ..+...+++|+ ...+.+ ++.++.++||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~---~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD---VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc---eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45899999999999999999999987 56777787775 222444 567889999999854
No 343
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.80 E-value=1e-08 Score=93.63 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=45.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~ 367 (551)
..+++++|.+|+||||++|+|++... ..++..+.+++... ...++..+.++||||+..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce--EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 46899999999999999999999873 55666666665222 22345678899999987654
No 344
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.79 E-value=1.5e-08 Score=112.05 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=85.1
Q ss_pred eecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhhcc
Q psy11743 313 GQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLV 389 (551)
Q Consensus 313 g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (551)
|+|||||||++|.|.|.. ..+++.|++|.. ..+.+++.++.++||||..+-. ..+.-++....++.. .
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~-~~s~~e~v~~~~l~~-----~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT-TFSLEEEVARDYLLN-----E 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC-ccchHHHHHHHHHhh-----c
Confidence 899999999999999987 578999999953 3355677889999999998643 222222333322221 1
Q ss_pred ccCc-------c-------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhh--
Q psy11743 390 NSPV-------L-------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFG-- 453 (551)
Q Consensus 390 ~~~~-------~-------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 453 (551)
.+|+ . .-....+.+++.|+|+||+|+. ++.......+.+.+.+ ..|.+.+
T Consensus 72 ~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~------------~~~~i~~d~~~L~~~l--g~pvv~tSA 137 (591)
T TIGR00437 72 KPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEA------------EKKGIRIDEEKLEERL--GVPVVPTSA 137 (591)
T ss_pred CCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHH------------HhCCChhhHHHHHHHc--CCCEEEEEC
Confidence 2221 1 1122234568889999999982 1111111233444444 2566665
Q ss_pred ccchH-HHHHHHHHHHH
Q psy11743 454 KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 454 ~~~~~-~~l~~~~~~~~ 469 (551)
++|.+ +++++.+.+..
T Consensus 138 ~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999 99999987654
No 345
>PRK04213 GTP-binding protein; Provisional
Probab=98.79 E-value=2.2e-08 Score=95.73 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=43.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~~~~~~~~l~dt~gi~ 364 (551)
..++|+++|.+||||||++|+|.+.. ..++..|++|+... ..++ .+.++||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---VRVGKRPGVTRKPNHYDWG--DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCceeeCceEEeec--ceEEEeCCccc
Confidence 45799999999999999999999877 45777888886332 3333 68899999963
No 346
>PRK11058 GTPase HflX; Provisional
Probab=98.79 E-value=2.6e-07 Score=98.16 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=83.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..|+|+++|.||+||||++|+|.+.+ ..++..+++|+ ...+.+.+ ..+.++||||+.+. .+.+-++.|
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~---~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~lve~f---- 267 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEAR---VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDLVAAF---- 267 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc---eeeccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHHHHHH----
Confidence 35799999999999999999999987 34778888875 22244444 47889999998542 122223333
Q ss_pred HhhhhhhccccCcc-------cccc----------c---ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHH
Q psy11743 381 LNRFQCSLVNSPVL-------KGKV----------L---QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYI 440 (551)
Q Consensus 381 ~~~~~~~~~~~~~~-------~~~~----------~---~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~ 440 (551)
.++...+..+|++ .... + ....++.++|+||+|+.... .. .. ..
T Consensus 268 -~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~----------~~----~~-~~ 331 (426)
T PRK11058 268 -KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF----------EP----RI-DR 331 (426)
T ss_pred -HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch----------hH----HH-HH
Confidence 1233344555532 1111 1 12357789999999982110 00 00 00
Q ss_pred HHHHHhccch-hhh--ccchH-HHHHHHHHHHH
Q psy11743 441 ISALRKDMPS-VFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 441 ~~~l~~~~~~-~~~--~~~~~-~~l~~~~~~~~ 469 (551)
. ....|. +.+ ++|.+ ++|++.+.+..
T Consensus 332 -~--~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 332 -D--EENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -H--hcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 0 012232 333 88999 99999998755
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.78 E-value=1.1e-08 Score=95.30 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.||+|||||+|+|+|.....+...|+.|+..
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~ 155 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM 155 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence 3478999999999999999999998876666667766654
No 348
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.77 E-value=1.6e-08 Score=96.42 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
.+|+++|++|+||||++|+|+|++...+..+ .+++|+. ....+++.++.++||||+.+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 3799999999999999999999974322222 3345542 22446788999999999998653
No 349
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.76 E-value=3.2e-08 Score=90.64 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=38.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEec-CCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYD-EREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~-~~~~~l~dt~gi~ 364 (551)
.++++|++||||||++|+|.+......+-...+++|. .....+. +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 5899999999999999999986422222223345553 2223344 6678899999963
No 350
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=2.5e-08 Score=105.39 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=86.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEec-CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..|+++|.|||||||++|.|.+.. ..|+..|.||.... +.+. +..+.++||||+........ .++..|+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak---~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~---gLg~~fLr 232 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK---PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV---GLGHQFLR 232 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC---CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc---hHHHHHHH
Confidence 479999999999999999999987 56788999986322 4444 67899999999975332221 23333433
Q ss_pred hhhhhccccCccc-------c-------------ccc-----ccccceeEEEecccCCCCccchhhhhhhhhccChhhHH
Q psy11743 383 RFQCSLVNSPVLK-------G-------------KVL-----QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQ 437 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~-------------~~~-----~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~ 437 (551)
.+.+++++. . ..+ .-...+.++|+||+|++.. ....
T Consensus 233 ----hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---------------~e~l 293 (424)
T PRK12297 233 ----HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---------------EENL 293 (424)
T ss_pred ----HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---------------HHHH
Confidence 223332210 0 000 0135678999999998311 0012
Q ss_pred HHHHHHHHhccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 438 AYIISALRKDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 438 ~~~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
+.+.+.+. .+++.+ +++.+ ++|+..+.+.+..
T Consensus 294 ~~l~~~l~--~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 294 EEFKEKLG--PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred HHHHHHhC--CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 33334442 344444 78888 9999999876643
No 351
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.76 E-value=1.6e-08 Score=93.10 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=76.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC-
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV- 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~- 135 (551)
|.++++|..|+|||||++++++... + .+..++.....+..+++..+..-...-....++|.||....++
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~-~---------~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~ 70 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH-G---------RKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLI 70 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc-C---------CcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHH
Confidence 5789999999999999999997642 1 1222233222222222211110000011233467777655332
Q ss_pred ---------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhC
Q psy11743 136 ---------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRG 199 (551)
Q Consensus 136 ---------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~ 199 (551)
-....+|||||+.++..- ++.- +........-+.|.+++++|+.+... ......+..++..
T Consensus 71 ~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~-~~~~--~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ 147 (158)
T cd03112 71 RALLDLLERLDAGKIAFDRIVIETTGLADPGPV-AQTF--FMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF 147 (158)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcCCHHHH-HHHH--hhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH
Confidence 135689999999874321 1000 01112334467999999999974111 0011233445544
Q ss_pred CCCcEEEEEcCCCC
Q psy11743 200 HDDKIRIVLNKADM 213 (551)
Q Consensus 200 ~~~~vilVlNK~Dl 213 (551)
. -++|+||+|+
T Consensus 148 a---d~ivlnk~dl 158 (158)
T cd03112 148 A---DRILLNKTDL 158 (158)
T ss_pred C---CEEEEecccC
Confidence 3 3779999996
No 352
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.73 E-value=4.7e-08 Score=90.25 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=43.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~ 365 (551)
|+|+++|.+|+||||++|+|.+..+ .++..+++|+... ...++..+.++||||..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 5799999999999999999999873 4556677665333 234567889999999854
No 353
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.73 E-value=2.5e-07 Score=94.26 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=100.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCC-CCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF-SPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g-~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
|..+|.|--|+|||||+|.|+...- ..+..++.....+..+++ ..+..-..--.+..++|.||++...+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~----------g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl 71 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD----------GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDL 71 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC----------CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchh
Confidence 6788999999999999999998762 345566666665666663 32222222223456789999977655
Q ss_pred c------------cCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhCC
Q psy11743 136 L------------KGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRGH 200 (551)
Q Consensus 136 l------------~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~~ 200 (551)
+ -...+|.|-|+..+...... +.. ......-..|.++-|+|+.+...... ...+.+++.
T Consensus 72 ~~~~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t----~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-- 145 (323)
T COG0523 72 LPALERLLRRRDRPDRLVIETTGLADPAPVIQT----FLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-- 145 (323)
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHH----hccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH--
Confidence 1 24679999999986432100 100 00011245688999999986221111 123334444
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
..=++|+||.|+++++++ +........+ .|.++++..|.
T Consensus 146 -~AD~ivlNK~Dlv~~~~l-~~l~~~l~~l-----np~A~i~~~~~ 184 (323)
T COG0523 146 -FADVIVLNKTDLVDAEEL-EALEARLRKL-----NPRARIIETSY 184 (323)
T ss_pred -hCcEEEEecccCCCHHHH-HHHHHHHHHh-----CCCCeEEEccc
Confidence 335899999999998763 3333333222 34555555554
No 354
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.72 E-value=2.3e-08 Score=90.84 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=61.9
Q ss_pred EEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhh
Q psy11743 310 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQC 386 (551)
Q Consensus 310 ~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~ 386 (551)
+++|.+|+||||++|+|.+.. ...++..+++|+ .....+.+..+.++||||...... .+...+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR--DAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE------GISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc--EEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh------HHHHHHHHHHHH
Confidence 478999999999999999986 245667777775 223445677889999999875331 122212222222
Q ss_pred hccccCcc-------cc---------cccccccceeEEEecccCC
Q psy11743 387 SLVNSPVL-------KG---------KVLQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 387 ~~~~~~~~-------~~---------~~~~~~~~~~v~~~~~wd~ 415 (551)
.+..+|++ .+ ..++...++.++|+||||+
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECccc
Confidence 33333321 11 1122335778999999998
No 355
>KOG4252|consensus
Probab=98.71 E-value=2.4e-08 Score=89.90 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=92.6
Q ss_pred ccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 50 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 50 ~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
+.+.+.-++++|+|.-++||||+|.+.+..-+ |.+-... .|.+|+.+-+.+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgif---------Tkdykkt--------------------Igvdflerqi~v 64 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIF---------TKDYKKT--------------------IGVDFLERQIKV 64 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhcccc---------ccccccc--------------------cchhhhhHHHHh
Confidence 34556678999999999999999999986543 1111100 111111110000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIV 207 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilV 207 (551)
.. .+ -...+|||+|..+ |...+..+.++|.+.++|+..++....+...+|.+.+.. ..+|.++|
T Consensus 65 ~~-Ed--vr~mlWdtagqeE-----------fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 65 LI-ED--VRSMLWDTAGQEE-----------FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred hH-HH--HHHHHHHhccchh-----------HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 00 00 2356899999865 777888899999999999998853223333455554432 47999999
Q ss_pred EcCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-||+|++++..+.. ..+.+...+.. ..+-+|++.+.++
T Consensus 131 qNKIDlveds~~~~~evE~lak~l~~-------RlyRtSvked~NV 169 (246)
T KOG4252|consen 131 QNKIDLVEDSQMDKGEVEGLAKKLHK-------RLYRTSVKEDFNV 169 (246)
T ss_pred eccchhhHhhhcchHHHHHHHHHhhh-------hhhhhhhhhhhhh
Confidence 99999997654322 12223322222 1233777777766
No 356
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.71 E-value=3e-08 Score=90.33 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=42.1
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecC
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++|.+||||||++|+|.+.. ..++..+++|+. ..+.+.+..+.++||||....
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---ccccCCCCcccccceEEEeeCCeEEEEEECCCcccc
Confidence 57999999999999999886 466777888852 335566778899999998653
No 357
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.70 E-value=5.1e-08 Score=93.84 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccccccc---ccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGN---SFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~---~~~~~~~~~~~ 131 (551)
..+.|+++|..|+|||||+++++..... ..+..++..+. ...++.. .+...|. ...++|.|+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~---------~~~v~v~~~~~-~~~~D~~---~~~~~~~~~~~l~~gcic~~~ 87 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD---------EVKIAVIEGDV-ITKFDAE---RLRKYGAPAIQINTGKECHLD 87 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc---------CCeEEEEECCC-CCcccHH---HHHHcCCcEEEEcCCCcccCC
Confidence 4689999999999999999999976310 01222222111 1011110 1111111 11123333211
Q ss_pred CCCC----------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC
Q psy11743 132 NSPV----------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD 201 (551)
Q Consensus 132 ~~~~----------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 201 (551)
...+ -..+.+|+|.|...... .+ .-..+..+.|+|+.. .-.. .........
T Consensus 88 ~~~~~~~l~~~~~~~~d~IiIEt~G~l~~~~-------~~-------~~~~~~~i~Vvd~~~-~d~~----~~~~~~~~~ 148 (207)
T TIGR00073 88 AHMVAHALEDLPLDDIDLLFIENVGNLVCPA-------DF-------DLGEHMRVVLLSVTE-GDDK----PLKYPGMFK 148 (207)
T ss_pred hHHHHHHHHHhccCCCCEEEEecCCCcCCCc-------cc-------ccccCeEEEEEecCc-ccch----hhhhHhHHh
Confidence 1100 13688999999322110 01 123466678888874 2111 111112234
Q ss_pred CcEEEEEcCCCCCCHH--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 202 DKIRIVLNKADMVDHQ--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.++|+||+|+.+.. ...+ .......+ .+..+++.+||+++.|+
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~-~~~~l~~~-----~~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEK-MKADAKKI-----NPEAEIILMSLKTGEGL 195 (207)
T ss_pred hCCEEEEEHHHccccchhhHHH-HHHHHHHh-----CCCCCEEEEECCCCCCH
Confidence 7789999999998632 2222 22222222 24568999999999987
No 358
>KOG0083|consensus
Probab=98.69 E-value=4.8e-09 Score=89.80 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=69.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl~ 214 (551)
.+.+|||+|... |.+++..+...+|+++++.|..+....+....|+..+.+ ....+.++.||||+.
T Consensus 48 klqiwdtagqer-----------frsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 48 KLQIWDTAGQER-----------FRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred EEEEeeccchHH-----------HhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 588999999875 788999999999999999999863344444667766664 345688999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++..+.+.-... +.. .-..|...+||++|.++
T Consensus 117 ~er~v~~ddg~k---la~---~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 117 HERAVKRDDGEK---LAE---AYGIPFMETSAKTGFNV 148 (192)
T ss_pred hhhccccchHHH---HHH---HHCCCceeccccccccH
Confidence 754332211111 111 11235677999999988
No 359
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.69 E-value=2.7e-08 Score=90.31 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~ 366 (551)
.+++++|.+|+||||++|+|.+.. ...++..+++|+.. .....+..+.++||||..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 479999999999999999999987 35677788888532 24446667889999998654
No 360
>KOG0076|consensus
Probab=98.69 E-value=4.5e-08 Score=88.11 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~D 212 (551)
..+.+||..|... ..+....+...|+++++|+|+.+....+.....++.+ ...+.|+++.+||-|
T Consensus 69 ~~l~fwdlgGQe~-----------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 69 APLSFWDLGGQES-----------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred ceeEEEEcCChHH-----------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 4589999999865 4566777889999999999998633222222222222 235899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+-+..+..+ +...+. +......+..++.++||++|.|+
T Consensus 138 ~q~~~~~~E-l~~~~~-~~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076|consen 138 LQNAMEAAE-LDGVFG-LAELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred hhhhhhHHH-HHHHhh-hhhhcCCccCccccchhhhcccH
Confidence 976544333 222332 23344667778899999999998
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=4.8e-08 Score=89.55 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=33.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 95 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~ 95 (551)
...+++++|.+|+|||||+|+|++.....+...++.|++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 46889999999999999999999987655566666666654
No 362
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.65 E-value=3.2e-08 Score=85.91 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=49.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~ 367 (551)
+|+++|.+|+||||++|+|++.+ ...++..+++|+... ..+.+..+.++||||+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 58999999999999999999976 478999999997543 34578888999999998754
No 363
>KOG0468|consensus
Probab=98.64 E-value=1.2e-07 Score=100.70 Aligned_cols=132 Identities=25% Similarity=0.328 Sum_probs=86.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....|+++|.-.+|||+|+..|.++..+... ..+.. +++-....+.+ .|-+....-..+.+.
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~---~~~e~~lrytD~l~~E~e-------------Rg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFS---KNTEADLRYTDTLFYEQE-------------RGCSIKSTPVTLVLS 190 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecccccc---ccccccccccccchhhHh-------------cCceEeecceEEEEe
Confidence 3457999999999999999999987753221 11111 11100000000 000000000000000
Q ss_pred -C-CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 133 -S-PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 133 -~-~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
. .--.-++++||||+.+ |...+...+..+|++++|+|+.. +.+-...++++..-+...|+.+|+||
T Consensus 191 D~~~KS~l~nilDTPGHVn-----------F~DE~ta~l~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~~~i~vviNK 258 (971)
T KOG0468|consen 191 DSKGKSYLMNILDTPGHVN-----------FSDETTASLRLSDGVVLVVDVAE-GVMLNTERIIKHAIQNRLPIVVVINK 258 (971)
T ss_pred cCcCceeeeeeecCCCccc-----------chHHHHHHhhhcceEEEEEEccc-CceeeHHHHHHHHHhccCcEEEEEeh
Confidence 0 0013478999999986 77788888999999999999996 88877788888888889999999999
Q ss_pred CCCC
Q psy11743 211 ADMV 214 (551)
Q Consensus 211 ~Dl~ 214 (551)
+|.+
T Consensus 259 iDRL 262 (971)
T KOG0468|consen 259 VDRL 262 (971)
T ss_pred hHHH
Confidence 9975
No 364
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.64 E-value=1.8e-07 Score=89.38 Aligned_cols=140 Identities=21% Similarity=0.149 Sum_probs=76.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCC--CccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+|+++|.+||||||++|.+.+..+.. ...|.++.. ..+.+++. .+.++||||..... ...... +..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~---~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e----~~~ 72 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE---EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQE----WMD 72 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc---ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhH----HHH
Confidence 78999999999999999999887532 224444321 22344553 45689999975421 111111 111
Q ss_pred hhhhhccccCcc-------cccc-----------c-----ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHH
Q psy11743 383 RFQCSLVNSPVL-------KGKV-----------L-----QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAY 439 (551)
Q Consensus 383 ~~~~~~~~~~~~-------~~~~-----------~-----~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~ 439 (551)
....++..+|+. .+.+ . ....+|.|+|+||+|++.. +.......+.
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~-----------~~~~~~~~~~ 141 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH-----------RFAPRHVLSV 141 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc-----------ccccHHHHHH
Confidence 122234445432 1110 0 1356888999999999321 0000001111
Q ss_pred HHHHHHhccchhhh--ccchH-HHHHHHHHHH
Q psy11743 440 IISALRKDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 440 ~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
+.+.. ..+|.+.+ ++|.+ ++++..+...
T Consensus 142 ~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 142 LVRKS-WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred HHHHh-cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 21111 23455555 78888 8888777753
No 365
>KOG0090|consensus
Probab=98.63 E-value=2.7e-07 Score=86.09 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=69.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
++.|+++|..++|||+|+-.|......+.-++.+|- .+ .-.+|+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn----~a-----------------~~r~gs--------------- 81 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN----EA-----------------TYRLGS--------------- 81 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccc----ee-----------------eEeecC---------------
Confidence 468999999999999999998876532211111111 00 001222
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHH----HHHHHh-----CCCCc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRR----SIEALR-----GHDDK 203 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~----~l~~l~-----~~~~~ 203 (551)
..+++||-||+.. ....+..+.. ++-+|+||+|+.. +....+. +...+. ....|
T Consensus 82 -~~~~LVD~PGH~r-----------lR~kl~e~~~~~~~akaiVFVVDSa~--f~k~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 82 -ENVTLVDLPGHSR-----------LRRKLLEYLKHNYSAKAIVFVVDSAT--FLKNVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred -cceEEEeCCCcHH-----------HHHHHHHHccccccceeEEEEEeccc--cchhhHHHHHHHHHHHHhhccccCCCC
Confidence 3479999999975 2334444444 8999999999873 2222222 223332 34678
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
++++.||.|+..
T Consensus 148 vLIaCNKqDl~t 159 (238)
T KOG0090|consen 148 VLIACNKQDLFT 159 (238)
T ss_pred EEEEecchhhhh
Confidence 999999999974
No 366
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.62 E-value=3.6e-08 Score=91.54 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=41.0
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEec-CCCccccCCceeec
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYD-EREGSVPGNALVVD 365 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~-~~~~~l~dt~gi~~ 365 (551)
++|.+|+||||++|+|.+... .++..+++|+. ..+.++ +.++.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 579999999999999999873 56777777742 234456 78889999999854
No 367
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.62 E-value=9e-08 Score=96.13 Aligned_cols=177 Identities=20% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|...|.-++|||||+-.|+-.+ ..++.+.|+.-..+..+.-..+.....+| .-||-.- .+. ..+.+|
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~---~v~Gf~d-gk~--~rlknP 186 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGR---LDDGDGATRSYLDVQKHEVERGLSADISL---RVYGFDD-GKV--VRLKNP 186 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecC---CCCCCcchhhhhhhhhHHHhhccccceeE---EEEEecC-Cce--EeecCc
Confidence 34678999999999999999887554 25555555433222111110000000000 0111000 000 112222
Q ss_pred C------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC
Q psy11743 135 V------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH 200 (551)
Q Consensus 135 ~------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 200 (551)
+ -+-+.+|||.|+.. |.+.+..-+ +..|..++++.|.+ +.+...++.+..+...
T Consensus 187 ld~aE~~~vv~~aDklVsfVDtvGHEp-----------wLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~ 254 (527)
T COG5258 187 LDEAEKAAVVKRADKLVSFVDTVGHEP-----------WLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM 254 (527)
T ss_pred ccHHHHhHhhhhcccEEEEEecCCccH-----------HHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh
Confidence 2 03478999999975 555554433 78999999999986 8888888888887788
Q ss_pred CCcEEEEEcCCCCCCHHHHHHH---HHHHHHHccccc------------------CCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRV---YGALMWSLGKVL------------------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~---~~~~~~~l~~l~------------------~~~~~~~v~iSa~~g~~~ 252 (551)
..|+|+|++|+|+.+++....+ +.+.....+++. +...+|++++||.+|.|+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl 327 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL 327 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH
Confidence 8999999999999987654332 223332222211 233578999999999987
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.62 E-value=7.7e-08 Score=86.69 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
.+++++|.+|+|||||+|+|++.....+...++.|+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~ 119 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK 119 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc
Confidence 389999999999999999999988654444444443
No 369
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=1.1e-07 Score=93.20 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=34.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHH---HHH--hccCEEEEEEeCCCCCCChHH--HHHH---HHHhCCCCcEEEE
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLE---WFA--ERVDRIILLFDAHKLDISDEF--RRSI---EALRGHDDKIRIV 207 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~---~~~--~~aD~il~VvDa~~~~~~~~~--~~~l---~~l~~~~~~vilV 207 (551)
.+.++||||+.+-.. +..... ..+ ...-++++++|+.. -.+... ..++ ....+.+.|.+.|
T Consensus 92 ~y~l~DtPGQiElf~--------~~~~~~~i~~~L~~~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT--------HSDSGRKIVERLQKNGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHHH--------HSHHHHHHHHTSSS----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cEEEEeCCCCEEEEE--------echhHHHHHHHHhhhcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEe
Confidence 689999999875211 111222 122 23558999999984 222211 1111 1123568999999
Q ss_pred EcCCCCCC
Q psy11743 208 LNKADMVD 215 (551)
Q Consensus 208 lNK~Dl~~ 215 (551)
+||+|+++
T Consensus 163 lsK~Dl~~ 170 (238)
T PF03029_consen 163 LSKIDLLS 170 (238)
T ss_dssp E--GGGS-
T ss_pred eeccCccc
Confidence 99999998
No 370
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.4e-07 Score=93.70 Aligned_cols=68 Identities=26% Similarity=0.273 Sum_probs=61.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++|+||||+.+ |.+-+.+.+.-+|..++|+|+.+ ++.++...+++.++-.+.|++-.+||+|....
T Consensus 81 ~~iNLLDTPGHeD-----------FSEDTYRtLtAvDsAvMVIDaAK-GiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 81 CLVNLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred eEEeccCCCCccc-----------cchhHHHHHHhhheeeEEEeccc-CccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 4589999999987 66777888889999999999997 99999999999999999999999999998753
No 371
>KOG1547|consensus
Probab=98.58 E-value=7.3e-07 Score=84.40 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCC---CCCC--CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPG---IHIG--PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~---~~~~--~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
.+.|++||++|.|||||+|.|....+.. .... |.|.|...-.+.+.- ++-|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi-------------eE~gV---------- 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI-------------EEKGV---------- 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee-------------eecce----------
Confidence 3679999999999999999999765321 1111 222222222222211 11111
Q ss_pred cCCCCccCeEEEeCCCCCCCcccc--cccccc-hHHHHHHHH--------------hccCEEEEEEeCCCCCCChHHHHH
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQR--VDRGYD-FTGVLEWFA--------------ERVDRIILLFDAHKLDISDEFRRS 193 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~-~~~~~~~~~--------------~~aD~il~VvDa~~~~~~~~~~~~ 193 (551)
-.++++|||||+.+..... .+.-.. +.++...++ .+.+++|+.+.++.-.+...+.++
T Consensus 103 -----klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDief 177 (336)
T KOG1547|consen 103 -----KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEF 177 (336)
T ss_pred -----EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHH
Confidence 1468999999998743210 000000 111111121 467899999999865778888888
Q ss_pred HHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 194 IEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 194 l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
++.|.+. ..++-|+-|+|.+.-++.
T Consensus 178 lkrLt~v-vNvvPVIakaDtlTleEr 202 (336)
T KOG1547|consen 178 LKRLTEV-VNVVPVIAKADTLTLEER 202 (336)
T ss_pred HHHHhhh-heeeeeEeecccccHHHH
Confidence 8877653 458889999999875543
No 372
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.58 E-value=1.9e-07 Score=85.81 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=70.1
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCS 387 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~ 387 (551)
+|+++|.+|+||||++|.|.|..- + ..+|... .+... .++||||...... .+.. ....+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~---~~~~~~v--~~~~~--~~iDtpG~~~~~~------~~~~----~~~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----L---ARKTQAV--EFNDK--GDIDTPGEYFSHP------RWYH----ALITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----c---CccceEE--EECCC--CcccCCccccCCH------HHHH----HHHHH
Confidence 699999999999999999987641 1 1222222 22222 2799999864431 1111 11122
Q ss_pred ccccCc-------cccccc-----c--cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhh
Q psy11743 388 LVNSPV-------LKGKVL-----Q--TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFG 453 (551)
Q Consensus 388 ~~~~~~-------~~~~~~-----~--~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (551)
+..+|+ ..+.+. . ....+.++++||+|++-. ..+ ....+...+....|++++
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-------------~~~-~~~~~~~~~~~~~p~~~~ 127 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-------------DVA-ATRKLLLETGFEEPIFEL 127 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-------------cHH-HHHHHHHHcCCCCCEEEE
Confidence 333332 212111 1 124566888999998311 111 112222333222477767
Q ss_pred --ccchH-HHHHHHHHHHH
Q psy11743 454 --KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 454 --~~~~~-~~l~~~~~~~~ 469 (551)
++|.+ +++++.+.+..
T Consensus 128 Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 128 NSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred ECCCccCHHHHHHHHHHhc
Confidence 88888 99998887754
No 373
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.6e-07 Score=94.07 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=93.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCC-CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPG-IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~-~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..++.|+++|+||+||||||.+|+.+-... +....+ .++++. +.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTvvs-gK------------------------------ 111 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITVVS-GK------------------------------ 111 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEEee-cc------------------------------
Confidence 355678899999999999999999864210 111111 222221 11
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~ 211 (551)
.+.++++.+|. + ..++.....-||+||+++|+. .++.-+..+++..+..++.| ++-|++..
T Consensus 112 ---~RRiTflEcp~--D------------l~~miDvaKIaDLVlLlIdgn-fGfEMETmEFLnil~~HGmPrvlgV~Thl 173 (1077)
T COG5192 112 ---TRRITFLECPS--D------------LHQMIDVAKIADLVLLLIDGN-FGFEMETMEFLNILISHGMPRVLGVVTHL 173 (1077)
T ss_pred ---eeEEEEEeChH--H------------HHHHHhHHHhhheeEEEeccc-cCceehHHHHHHHHhhcCCCceEEEEeec
Confidence 05699999993 2 223445567899999999998 58888888999999988888 66699999
Q ss_pred CCCCHHHHHH----HHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 212 DMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 212 Dl~~~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
|+.......+ .+...||.-- .+++..+|+|...+
T Consensus 174 Dlfk~~stLr~~KKrlkhRfWtEi----yqGaKlFylsgV~n 211 (1077)
T COG5192 174 DLFKNPSTLRSIKKRLKHRFWTEI----YQGAKLFYLSGVEN 211 (1077)
T ss_pred ccccChHHHHHHHHHHhhhHHHHH----cCCceEEEeccccc
Confidence 9986543322 2334566422 24556677776543
No 374
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.57 E-value=1.4e-07 Score=89.51 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=39.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC----CCcccccCCCcccceE---EEEec--------------CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD----FPGIHIGPEPTTDRFI---AVMYD--------------EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~----~~~~~v~~~~~~tr~~---~~~~~--------------~~~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|+|.+.. +........+++|... ...+. +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 368999999999999999999741 2223444455666321 22232 5678899999973
No 375
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.57 E-value=1.6e-07 Score=90.03 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC-CccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~-~~~l~dt~gi~~~ 366 (551)
..++|+++|.+|+||||++|.|.+.. ..+...+.+|. ...+.+++. .+.++||||..+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD---VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch---hccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 34799999999999999999999986 33444444442 122334443 8889999998653
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.55 E-value=1.2e-07 Score=95.84 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.||||||||+|+|++.....+...|+.|+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~ 159 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ 159 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE
Confidence 4578999999999999999999999876666667666554
No 377
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.55 E-value=2.2e-07 Score=85.95 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=36.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|++.+..+........+..+...........+.++||||..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 789999999999999999999875322111111112111122234456789999965
No 378
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.55 E-value=7.2e-07 Score=87.77 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=55.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||.|-|...++- ....-+|.+++|.-+. ..+...-+-.-+. ...=++|+||+|.-..
T Consensus 144 ~DvIIVETVGvGQsev--------------~I~~~aDt~~~v~~pg---~GD~~Q~iK~Gim--EiaDi~vINKaD~~~A 204 (323)
T COG1703 144 YDVIIVETVGVGQSEV--------------DIANMADTFLVVMIPG---AGDDLQGIKAGIM--EIADIIVINKADRKGA 204 (323)
T ss_pred CCEEEEEecCCCcchh--------------HHhhhcceEEEEecCC---CCcHHHHHHhhhh--hhhheeeEeccChhhH
Confidence 4588999999876331 1236799999998664 2333211111111 2345899999996544
Q ss_pred HHHHHHHHHHHHHcc--cccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLG--KVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~--~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...+.+........ .-...+.+|++.+||..|+|+
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi 242 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGI 242 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCH
Confidence 333222222222121 111234568899999999988
No 379
>KOG1486|consensus
Probab=98.55 E-value=4.4e-07 Score=86.40 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=60.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|-|+||||||+..+++..... ....|+...+ +|| +-.|..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Sea-------A~yeFTTLtc------IpG-----vi~y~g-------------- 108 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEA-------ASYEFTTLTC------IPG-----VIHYNG-------------- 108 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhh-------hceeeeEEEe------ecc-----eEEecC--------------
Confidence 34689999999999999999999765311 1111222111 111 111211
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.++|.||+.++..+.-.++. ++-..+..||+|++|+|++.
T Consensus 109 --a~IQllDLPGIieGAsqgkGRGR----QviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 109 --ANIQLLDLPGIIEGASQGKGRGR----QVIAVARTADLILMVLDATK 151 (364)
T ss_pred --ceEEEecCcccccccccCCCCCc----eEEEEeecccEEEEEecCCc
Confidence 45899999999988766554443 33445678999999999985
No 380
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.2e-07 Score=89.95 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...++++|.+|+|||||+|+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999998653
No 381
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.7e-07 Score=93.75 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+++.|||-||||||||+|+|+... .....-|-.|-+....+.+-.+. .+.+++.-. +|.-...+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~---------rl~~L~~~~--~c~~k~~~--- 66 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDC---------RLDELAEIV--KCPPKIRP--- 66 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCch---------HHHHHHHhc--CCCCcEEe---
Confidence 3679999999999999999999988 44566777777777666554321 122222100 00001112
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+.+||.+|+..+..+.. ..-.+...-++.+|+|+.|+|+..
T Consensus 67 -~~ve~vDIAGLV~GAs~Ge----GLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 -APVEFVDIAGLVKGASKGE----GLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred -eeeEEEEecccCCCcccCC----CcchHHHHhhhhcCeEEEEEEecC
Confidence 3489999999998765433 344445556789999999999984
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=1.9e-07 Score=94.02 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.+|||||||+|+|++.....+...|++|+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~ 156 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ 156 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce
Confidence 3578999999999999999999998876666666666544
No 383
>KOG0070|consensus
Probab=98.50 E-value=6.1e-07 Score=82.14 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|--|+||||++..|--.+. +.+ .||-.-. ..+. |.+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~--vtt--vPTiGfnVE~v~------------------ykn------------- 60 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTT--VPTIGFNVETVE------------------YKN------------- 60 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc--ccC--CCccccceeEEE------------------Ecc-------------
Confidence 457899999999999999999876553 222 2332111 1111 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlN 209 (551)
.++++||..|... +......+..+.+.+|||+|..+..-..+.+ ++...+.. .+.|+++..|
T Consensus 61 ---~~f~vWDvGGq~k-----------~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 61 ---ISFTVWDVGGQEK-----------LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred ---eEEEEEecCCCcc-----------cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 4589999999864 4555677889999999999998532222222 33333332 3678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+...-...++ ...+ .+..+...++ .+-.++|.+|.|+
T Consensus 127 KqD~~~als~~ei-~~~L-~l~~l~~~~w-~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 127 KQDLPGALSAAEI-TNKL-GLHSLRSRNW-HIQSTCAISGEGL 166 (181)
T ss_pred hhhccccCCHHHH-HhHh-hhhccCCCCc-EEeeccccccccH
Confidence 9998743222221 1111 2333334333 4556778777776
No 384
>PTZ00099 rab6; Provisional
Probab=98.50 E-value=4e-07 Score=85.30 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=61.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl 213 (551)
..+.||||||... +......++..+|++|+|+|+++.........++..+.. ...|+++|+||+|+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 3589999999864 444556678999999999999852212222344444332 35678999999999
Q ss_pred CCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.....+.. ......... ....+.+||++|.|+
T Consensus 98 ~~~~~v~~~e~~~~~~~~-------~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 98 GDLRKVTYEEGMQKAQEY-------NTMFHETSAKAGHNI 130 (176)
T ss_pred ccccCCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 64221110 011111111 124567999999988
No 385
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.50 E-value=3.5e-07 Score=82.36 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=42.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~--~~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|.|.+.. .+.+..+++++... +..++ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 589999999999999999999987 45566666665322 44555 557789999943
No 386
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.49 E-value=9.1e-07 Score=84.54 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=51.3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
..++|+|.|..- ... +. . .-+|.++.|+|+.+ ... ........+ ...-++|+||+|+.+.
T Consensus 93 D~iiIEt~G~~l------~~~--~~----~--~l~~~~i~vvD~~~-~~~-~~~~~~~qi---~~ad~~~~~k~d~~~~~ 153 (199)
T TIGR00101 93 EMVFIESGGDNL------SAT--FS----P--ELADLTIFVIDVAA-GDK-IPRKGGPGI---TRSDLLVINKIDLAPMV 153 (199)
T ss_pred CEEEEECCCCCc------ccc--cc----h--hhhCcEEEEEEcch-hhh-hhhhhHhHh---hhccEEEEEhhhccccc
Confidence 578999999521 111 11 1 12588999999985 211 111111122 2334899999999852
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.. .......+ .+.++++.+||++|.|+
T Consensus 154 ~~~~~~-~~~~~~~~-----~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 154 GADLGV-MERDAKKM-----RGEKPFIFTNLKTKEGL 184 (199)
T ss_pred cccHHH-HHHHHHHh-----CCCCCEEEEECCCCCCH
Confidence 22222 12222221 34678899999999998
No 387
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.49 E-value=1.2e-06 Score=90.67 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=87.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc------ccccccccceeE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG------KFGNSFLNRFQC 128 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~------~~g~~~~~~~~~ 128 (551)
+.|..+|.|--|+|||||+|+|+... ...++.++.....+..+++.-+.... ..-....++|.|
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~----------~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiC 72 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNA----------AGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCIC 72 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc----------CCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCcc
Confidence 45889999999999999999999642 22345555554444444442221100 011234568999
Q ss_pred EecCCCCc------------cCeEEEeCCCCCCCcccccccccchHHHHHH-H---HhccCEEEEEEeCCCCCC-C----
Q psy11743 129 SLVNSPVL------------KGISIVDTPGILSGEKQRVDRGYDFTGVLEW-F---AERVDRIILLFDAHKLDI-S---- 187 (551)
Q Consensus 129 ~~~~~~~l------------~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~-~---~~~aD~il~VvDa~~~~~-~---- 187 (551)
|++..++. -...+|.|.|+.++.. +.+...+ . .-..|.++.|+|+.+... .
T Consensus 73 Cs~~~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~~--------i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~ 144 (341)
T TIGR02475 73 CTVADDFIPTMTKLLARRQRPDHILIETSGLALPKP--------LVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAAD 144 (341)
T ss_pred ccCcHHHHHHHHHHHhccCCCCEEEEeCCCCCCHHH--------HHHHhcCccccceEEeeeEEEEEECchhhhhccccc
Confidence 98775541 2567999999987532 2222211 1 126788999999974210 0
Q ss_pred -----------------hH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 188 -----------------DE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 188 -----------------~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
.. ...+..++. ..-++|+||+|+++.+++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~ 194 (341)
T TIGR02475 145 PDALDAQRAADDNLDHETPLEELFEDQLA---CADLVILNKADLLDAAGLARV 194 (341)
T ss_pred hhhhhhhccccccccccchHHHHHHHHHH---hCCEEEEeccccCCHHHHHHH
Confidence 00 011233443 335899999999998766543
No 388
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.49 E-value=2e-07 Score=85.85 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=39.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEe---cCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMY---DEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~---~~~~~~l~dt~gi~ 364 (551)
|+++++|.+|+||||++|+|.+..+. ....+++|. ...+.. .+..+.++||||..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA---AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc---cccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 57999999999999999999988642 223344443 222333 25678899999963
No 389
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.49 E-value=2.4e-07 Score=86.97 Aligned_cols=141 Identities=24% Similarity=0.292 Sum_probs=76.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccc---cccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFG---NSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g---~~~~~~~~~~~~~~ 133 (551)
|.++|.|-.|||||||+|+|+.... ...+..++.....+..+++.. +...| ....++|.||++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~---------~~~~~~vI~ne~g~~~iD~~~---l~~~~~~v~~l~~gcicc~~~~ 68 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNR---------QGERVAVIVNEFGEVNIDAEL---LQEDGVPVVELNNGCICCTLRD 68 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHT---------TTS-EEEEECSTTSTHHHHHH---HHTTT-EEEEECTTTESS-TTS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhc---------CCceeEEEEccccccccchhh---hcccceEEEEecCCCcccccHH
Confidence 6789999999999999999995211 122344444433322232211 11122 22334577766444
Q ss_pred CC-------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHHHHHHhC
Q psy11743 134 PV-------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRSIEALRG 199 (551)
Q Consensus 134 ~~-------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~l~~l~~ 199 (551)
++ --...+|.|.|+.++.. + -+........-..+.++.|+|+.++. .......+...+..
T Consensus 69 ~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~--l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ 142 (178)
T PF02492_consen 69 DLVEALRRLLREYEERPDRIIIETSGLADPAP--L----ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF 142 (178)
T ss_dssp -HHHHHHHHCCCCHGC-SEEEEEEECSSGGGG--H----HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCCcCEEEECCccccccch--h----hhccccccccccccceeEEeccccccccccchhhhhhcchh
Confidence 33 12578999999876432 1 01112222235678999999996421 11111233444443
Q ss_pred CCCcEEEEEcCCCCCCHHH
Q psy11743 200 HDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 200 ~~~~vilVlNK~Dl~~~~~ 218 (551)
. -++|+||+|+++.++
T Consensus 143 A---DvIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 143 A---DVIVLNKIDLVSDEQ 158 (178)
T ss_dssp ----SEEEEE-GGGHHHH-
T ss_pred c---CEEEEeccccCChhh
Confidence 3 488999999998763
No 390
>KOG3883|consensus
Probab=98.48 E-value=2e-06 Score=75.84 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=82.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..-+|+++|.-++|||+++..|+-.+.- ......||-..+.+..-..+. | .+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~-~~~e~~pTiEDiY~~svet~r--------------g----ar--------- 59 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHV-PGTELHPTIEDIYVASVETDR--------------G----AR--------- 59 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCC-CCCccccchhhheeEeeecCC--------------C----hh---------
Confidence 3468999999999999999999855431 122333454443332221111 1 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.+-||.|+..+. .+.-+.+.+-+|+.++|.++.++........+-.++.+ ...|++++.||
T Consensus 60 --E~l~lyDTaGlq~~~----------~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 60 --EQLRLYDTAGLQGGQ----------QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred --heEEEeecccccCch----------hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 458999999998741 33556778899999999998863222222222233332 34689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc
Q psy11743 211 ADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l 230 (551)
+|+..+.++.-. .+..|..
T Consensus 128 rdr~~p~~vd~d-~A~~Wa~ 146 (198)
T KOG3883|consen 128 RDRAEPREVDMD-VAQIWAK 146 (198)
T ss_pred hhcccchhcCHH-HHHHHHh
Confidence 999866544222 2444543
No 391
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.48 E-value=2.6e-07 Score=88.19 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=40.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCC--c-ccccCCCcccceEE-EEe-cCCCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFP--G-IHIGPEPTTDRFIA-VMY-DEREGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~--~-~~v~~~~~~tr~~~-~~~-~~~~~~l~dt~gi~~~~ 367 (551)
|++++++|.+|+||||++|+|++.... + ++++ ...+|+... ... ....+.++||||+....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCceeeecCCCCCceEEeCCCCCccc
Confidence 468999999999999999999996431 1 2223 223343221 221 23468899999987643
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.48 E-value=1.3e-07 Score=98.64 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC-----CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF-----PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~-----~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..|+++|.+|||||||+|+|++... +.++..|++|++.... ..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~-~~------------------------------- 202 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI-PL------------------------------- 202 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE-Ee-------------------------------
Confidence 5899999999999999999998642 2334445444433211 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
...+.++||||+.... .+..-.. .+.+... -.....+.+.+|..+ .+.-.....++.+......+.+.++
T Consensus 203 ----~~~~~l~DtPG~~~~~--~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~q-~~~~ggl~~~d~~~~~~~~~~~~~~ 274 (360)
T TIGR03597 203 ----DDGHSLYDTPGIINSH--QMAHYLD-KKDLKYITPKKEIKPKTYQLNPNQ-TLFLGGLARFDYLKGEKTSFTFYVS 274 (360)
T ss_pred ----CCCCEEEECCCCCChh--HhhhhcC-HHHHhhcCCCCccCceEEEeCCCC-EEEEceEEEEEEecCCceEEEEEcc
Confidence 0347899999998632 1111000 1111111 145677888888775 3333333333444444556777888
Q ss_pred CCCCCCHH
Q psy11743 210 KADMVDHQ 217 (551)
Q Consensus 210 K~Dl~~~~ 217 (551)
+.+.++..
T Consensus 275 ~~~~~h~t 282 (360)
T TIGR03597 275 NELNIHRT 282 (360)
T ss_pred CCceeEee
Confidence 88877643
No 393
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.47 E-value=1.3e-06 Score=87.12 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|.|+|.+|+|||||++++++.-
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999863
No 394
>KOG0447|consensus
Probab=98.47 E-value=2.1e-06 Score=89.68 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc
Q psy11743 14 EMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 93 (551)
Q Consensus 14 ~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~ 93 (551)
-...++...|.+.|.+.+..|... +.-.. ..+..|+|++||.-++||||.+..+....++.-..+.--|+.
T Consensus 275 i~~kklKkSLIDMYSEVLD~Ls~Y---D~sYn------t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRa 345 (980)
T KOG0447|consen 275 IHHRKLKKSLIDMYSEVLDVLSDY---DASYN------TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRS 345 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc---ccccc------ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccC
Confidence 345667777888888776444432 21111 235679999999999999999999998876432233333554
Q ss_pred eEEEEEeCCCccccCC-----CCcc-----cc--------------cccccccccceeEEecCCCCccCeEEEeCCCCCC
Q psy11743 94 RFIAVMYDEREGSVPF-----SPLD-----KF--------------GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILS 149 (551)
Q Consensus 94 ~~~~i~~~~~~~~i~g-----~~~~-----~~--------------~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~ 149 (551)
.+-+... +....+.. ..|+ .+ .+-|-...+..+..++..|-|...++||.||+.+
T Consensus 346 PVKVTLs-EGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIs 424 (980)
T KOG0447|consen 346 PVKVTLS-EGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVIN 424 (980)
T ss_pred CeEEEec-cCcchhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhh
Confidence 4433221 11110100 0111 00 0111112222344567788899999999999987
Q ss_pred Ccccccc--cccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 150 GEKQRVD--RGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.....+. ....+.+....++++.++||+++.-...+.... .-.+...+..+++..|+|++|+|+...
T Consensus 425 TvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 425 TVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 5432222 123456677888999999988875432111111 123444555788999999999998753
No 395
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=2.1e-07 Score=95.39 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 95 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~ 95 (551)
..+|.++|.||||||||||+|+|+....+...|+.|....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 3679999999999999999999999865656665555443
No 396
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.45 E-value=3.3e-07 Score=86.03 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=38.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCccc-------------ccCCCcccc---eEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIH-------------IGPEPTTDR---FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~-------------v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+|+||||++|+|.+....... .....++|. ......++..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 4899999999999999999988632111 011123332 22244566778899999975
No 397
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.44 E-value=4.8e-07 Score=90.33 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=89.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc----eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr----~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
-|+++|-||+||||++|.+...+ ..|+++|=||- .+........+++.|-||++.-.....+ +|. +
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak---PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G---LG~----~ 230 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK---PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG---LGL----R 230 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC---CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC---ccH----H
Confidence 37899999999999999999998 78999998884 2222235666889999999875533222 233 3
Q ss_pred hhhhccccCccc-------------------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 384 FQCSLVNSPVLK-------------------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 384 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
+.+.|+++-++. .-...-.+-+.++|+||.|.+... ...+...+
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-----------e~~~~~~~ 299 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-----------EELEELKK 299 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-----------HHHHHHHH
Confidence 444555553321 011111345679999999974321 11122333
Q ss_pred HHHHHHHhccch--hhhccchH-HHHHHHHHHHHHHH
Q psy11743 439 YIISALRKDMPS--VFGKEGKK-KELIKKLDEIYKQI 472 (551)
Q Consensus 439 ~~~~~l~~~~~~--~~~~~~~~-~~l~~~~~~~~~~~ 472 (551)
.+.+.. .|.+. +.+.++++ +.|+..+.+++...
T Consensus 300 ~l~~~~-~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 300 ALAEAL-GWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHhc-CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 444333 33322 44478888 99999998877543
No 398
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.44 E-value=7.4e-07 Score=82.14 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=36.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c--eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R--FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r--~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.+.+..+.. ...++.+ . ...+..++. .+.+.||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE---SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999999887532 2223222 1 222334433 46788999943
No 399
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.44 E-value=6.7e-07 Score=81.80 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=43.3
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|+++|.+|+||||++|.|.+..+ ..+.+..+++|+.......+....++||||+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEccCeEEEecCCCcccccc
Confidence 78999999999999999996543 255666677776444333344888999999866543
No 400
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.44 E-value=2.2e-07 Score=88.49 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=60.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC--C-----------CcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD--F-----------PGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~--~-----------~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
+.|+++|.+++||||++++|++.. . ...+.....|+|. .....+++.++.++||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 579999999999999999998751 0 0011112345553 222345678899999999752
Q ss_pred chhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccce-eEEEecccCCC
Q psy11743 371 RPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVA-RVYIGSFWDQP 416 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~-~v~~~~~wd~~ 416 (551)
|+.....++..+|. ..|...++ ..++ .|+++||||+.
T Consensus 78 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 ---------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred ---------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 34445555566653 33444443 3455 46779999983
No 401
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.42 E-value=6.6e-07 Score=82.75 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=37.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..+++++|.+|+||||++|++.+..+.. ...+..+.+. ...+..++. .+.+.||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 4689999999999999999999887532 1122222222 223344443 45678999954
No 402
>KOG0074|consensus
Probab=98.42 E-value=9.9e-07 Score=76.69 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|--|+|||||+..|.+++..-+....+-.+.. +.+. | .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~---v~~~-----------------g-~------------ 61 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKK---VEYD-----------------G-T------------ 61 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEE---Eeec-----------------C-c------------
Confidence 45689999999999999999999998853221111111111 1110 1 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHh---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~---~~~~~vilVlN 209 (551)
-+++++|..|... +.-....+.++.|.+++|+|..+-...++. .++.+.+. -...|+++-.|
T Consensus 62 ---f~LnvwDiGGqr~-----------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfan 127 (185)
T KOG0074|consen 62 ---FHLNVWDIGGQRG-----------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFAN 127 (185)
T ss_pred ---EEEEEEecCCccc-----------cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhh
Confidence 3489999999765 344566788999999999997752333322 23333333 34678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|-|++......+..... .+..+ ......+-.+|++++.+.
T Consensus 128 kQdlltaa~~eeia~kl--nl~~l-rdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 128 KQDLLTAAKVEEIALKL--NLAGL-RDRSWHIQECSALSLEGS 167 (185)
T ss_pred hhHHHhhcchHHHHHhc--chhhh-hhceEEeeeCccccccCc
Confidence 99998643322211110 11111 112335566788877776
No 403
>KOG0077|consensus
Probab=98.41 E-value=1.6e-06 Score=77.67 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.-++++.|--|+|||||++.|-..+.......-.||+..... .|
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----------g~-------------------------- 63 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----------GG-------------------------- 63 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----------cC--------------------------
Confidence 457999999999999999988777655444555666554322 11
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
-.++-+|..|+.. -.+....++..+|.+++++|+.+.....+.+.-++.+. -...|+++..||+
T Consensus 64 -m~ftt~DLGGH~q-----------Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKI 131 (193)
T KOG0077|consen 64 -MTFTTFDLGGHLQ-----------ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKI 131 (193)
T ss_pred -ceEEEEccccHHH-----------HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence 4588999999864 35567788999999999999986444444433333332 2478999999999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|....
T Consensus 132 d~p~a 136 (193)
T KOG0077|consen 132 DIPYA 136 (193)
T ss_pred cCCCc
Confidence 99754
No 404
>KOG1707|consensus
Probab=98.41 E-value=1.8e-06 Score=91.37 Aligned_cols=116 Identities=25% Similarity=0.266 Sum_probs=75.4
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.....+|+++|.-|+||||||-+|++.++.. .-| +--+ .+.+|
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP-~rl~----------------------------------~i~IP 48 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVP-RRLP----------------------------------RILIP 48 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc--ccc-ccCC----------------------------------ccccC
Confidence 3456799999999999999999999998731 111 0000 11111
Q ss_pred CCCc---cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHHHHHHhC-----CCCc
Q psy11743 133 SPVL---KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRSIEALRG-----HDDK 203 (551)
Q Consensus 133 ~~~l---~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~l~~l~~-----~~~~ 203 (551)
.+.. -..++|||+.-.+ -...+..-+++||+|++|.+..+.. +..-...|+-.+++ ++.|
T Consensus 49 advtPe~vpt~ivD~ss~~~-----------~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P 117 (625)
T KOG1707|consen 49 ADVTPENVPTSIVDTSSDSD-----------DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP 117 (625)
T ss_pred CccCcCcCceEEEecccccc-----------hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC
Confidence 1111 2378999973322 2445677789999999999877511 12222345555553 5689
Q ss_pred EEEEEcCCCCCCH
Q psy11743 204 IRIVLNKADMVDH 216 (551)
Q Consensus 204 vilVlNK~Dl~~~ 216 (551)
+|+|.||+|+...
T Consensus 118 VILvGNK~d~~~~ 130 (625)
T KOG1707|consen 118 VILVGNKSDNGDN 130 (625)
T ss_pred EEEEeeccCCccc
Confidence 9999999999753
No 405
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.40 E-value=3.4e-06 Score=86.31 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|..+|.|--|+|||||+|+|+... ...++.++.....+..+++.-+.....--....++|.||++..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~----------~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~ 72 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQ----------HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNE 72 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc----------cCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCch
Confidence 45899999999999999999999653 12233444443333333332111100001234458999987764
Q ss_pred Cc----------------cCeEEEeCCCCCCCcccccccccchHHHHH--HHH---hccCEEEEEEeCCCCCC-ChHHHH
Q psy11743 135 VL----------------KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFA---ERVDRIILLFDAHKLDI-SDEFRR 192 (551)
Q Consensus 135 ~l----------------~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~---~~aD~il~VvDa~~~~~-~~~~~~ 192 (551)
+. -...+|.|.|+.++.. +.+... ..+ -..|.++.|+|+.+... ......
T Consensus 73 l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~--------i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~ 144 (318)
T PRK11537 73 LEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--------IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI 144 (318)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEECCCccCHHH--------HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH
Confidence 31 2468999999987432 111110 011 24688999999974211 011112
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
...++... -++|+||+|+++..
T Consensus 145 ~~~Qi~~A---D~IvlnK~Dl~~~~ 166 (318)
T PRK11537 145 AQSQVGYA---DRILLTKTDVAGEA 166 (318)
T ss_pred HHHHHHhC---CEEEEeccccCCHH
Confidence 23344433 48899999999754
No 406
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.40 E-value=5.6e-07 Score=83.86 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 93 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~ 93 (551)
..++++++|.+|+|||||+|+|++.....+...++.|+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~ 152 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG 152 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee
Confidence 346899999999999999999999876444444444433
No 407
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.39 E-value=1.1e-06 Score=85.68 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
--.|+|+|++++|||||+|.|+|. .+. +..+..+||..+.. ...... .+ .+
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~-~~~~~~~~T~gi~~-~~~~~~-------------~~----~~-------- 59 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFD-VMDTSQQTTKGIWM-WSVPFK-------------LG----KE-------- 59 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeE-ecCCCCCCccceEE-Eecccc-------------CC----Cc--------
Confidence 357999999999999999999998 443 22232344443221 111000 00 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAH 182 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~ 182 (551)
..+.++||||+.+..... . .......++. -+|++|+.++..
T Consensus 60 ---~~v~~lDteG~~~~~~~~--~---~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 60 ---HAVLLLDTEGTDGRERGE--F---EDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred ---ceEEEEecCCcCccccCc--h---hhhhHHHHHHHHHhCEEEEeccCc
Confidence 459999999998754321 0 1112222223 599999999886
No 408
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.39 E-value=1e-06 Score=80.32 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.+.+..+... ..+..+.........++.. +.+.||||..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-cCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999998875211 1111111112223344433 5578999954
No 409
>CHL00071 tufA elongation factor Tu
Probab=98.38 E-value=7.8e-07 Score=94.61 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=61.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC-------------CcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF-------------PGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~-------------~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
...+|+++|.+++|||||+|+|++..- .........|+|.. .....++.++.|+||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 456899999999999999999998620 01111222455542 2233467788999999953
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQP 416 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~~ 416 (551)
.|+.....++..+|+ ..|...|+ ..++. |+++||||+.
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 234444555555553 23444443 34563 5779999983
No 410
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.37 E-value=7e-07 Score=82.37 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=38.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+++++|.+||||||++|.+++..+....+...+.+.+. .........+.+.||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc
Confidence 479999999999999999999887643322222222221 11222334567899999753
No 411
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.37 E-value=2.1e-07 Score=84.89 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=23.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...++++|++|||||||+|+|++..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999974
No 412
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.37 E-value=1.2e-06 Score=85.96 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=45.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+++++|.||+||||++|.|.+.. ..++..+.+|. ...+.+++.++.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 68999999999999999999886 55777888774 2234567888999999998754
No 413
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.36 E-value=1.2e-06 Score=80.17 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|++.++ ..+..++++. ...+..++ ..+.+.||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF---DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 689999999999999999999874 3344555553 12233444 34678999994
No 414
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.35 E-value=1.2e-06 Score=80.49 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=35.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
++|+++|.+||||||+++.+.+..+..... +..+.+- ......++. .+.+.||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL-STYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 478999999999999999999886532111 1111111 111223333 45678999954
No 415
>PRK12289 GTPase RsgA; Reviewed
Probab=98.35 E-value=6.4e-07 Score=92.66 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=23.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPG 83 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~ 83 (551)
..++|+|++|||||||||+|++.....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccc
Confidence 368999999999999999999876543
No 416
>KOG0393|consensus
Probab=98.34 E-value=3.9e-07 Score=85.36 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+++|||..++|||+|+-.+....++ ....||- |...+ .+.++..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp---~~yvPTVFdnys~------------------------------~v~V~dg 50 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP---EEYVPTVFDNYSA------------------------------NVTVDDG 50 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc---ccccCeEEccceE------------------------------EEEecCC
Confidence 468999999999999999888776543 2222221 11110 0111100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhCC--CCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~~--~~~vilVlNK 210 (551)
-.-.+.+|||+|..+ +.+.---....+|++|+.++..+ +.+.+ ...|+..++.+ +.|+++|.+|
T Consensus 51 ~~v~L~LwDTAGqed-----------YDrlRplsY~~tdvfl~cfsv~~-p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk 118 (198)
T KOG0393|consen 51 KPVELGLWDTAGQED-----------YDRLRPLSYPQTDVFLLCFSVVS-PESFENVKSKWIPEIKHHCPNVPIILVGTK 118 (198)
T ss_pred CEEEEeeeecCCCcc-----------cccccccCCCCCCEEEEEEEcCC-hhhHHHHHhhhhHHHHhhCCCCCEEEEeeh
Confidence 012488999999876 22211125688999999898875 22222 24556555543 6899999999
Q ss_pred CCCCCH
Q psy11743 211 ADMVDH 216 (551)
Q Consensus 211 ~Dl~~~ 216 (551)
.||.++
T Consensus 119 ~DLr~d 124 (198)
T KOG0393|consen 119 ADLRDD 124 (198)
T ss_pred HHhhhC
Confidence 999853
No 417
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.34 E-value=9.2e-07 Score=83.83 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=37.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCc--cccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREG--SVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~--~l~dt~gi~~ 365 (551)
++|+++|.+|||||||+|.+.+..+...+..+..+.+. ...+..++..+ .+.||||...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 62 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER 62 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 37999999999999999999988753112222222222 12244455444 4789999643
No 418
>KOG0071|consensus
Probab=98.33 E-value=7.3e-06 Score=71.31 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+.+|-.++||||++-.|.-... +..-||+. .+..|.| .+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~----~~~ipTvGFnvetVty------------------kN-------------- 60 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS----VTTIPTVGFNVETVTY------------------KN-------------- 60 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC----cccccccceeEEEEEe------------------ee--------------
Confidence 46799999999999999999875542 22222322 1222222 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHhC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALRG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~~~vilVlNK 210 (551)
-.+.++|..|... +....+.+......+|||+|+...+-.++.++-+ ..+.. ...++++..||
T Consensus 61 --~kfNvwdvGGqd~-----------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 61 --VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred --eEEeeeeccCchh-----------hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 3488999999865 5667788899999999999987522222222222 22221 25678888999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-|+.+.....+ +... ..+..+.+.++ .+.+.++.+|.++
T Consensus 128 QDlp~A~~pqe-i~d~-leLe~~r~~~W-~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 128 QDLPDAMKPQE-IQDK-LELERIRDRNW-YVQPSCALSGDGL 166 (180)
T ss_pred cccccccCHHH-HHHH-hccccccCCcc-EeeccccccchhH
Confidence 99975322222 1222 23444445555 3556677666655
No 419
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.33 E-value=2.9e-07 Score=88.67 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccc------------------------------cCCCcccc---eEEEEecCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHI------------------------------GPEPTTDR---FIAVMYDERE 354 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v------------------------------~~~~~~tr---~~~~~~~~~~ 354 (551)
+|+++|.+|+||||++|+|+... ++.. ....|+|+ .....+++.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS--KSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce
Confidence 48999999999999999998764 2222 11245553 2335567888
Q ss_pred ccccCCcee
Q psy11743 355 GSVPGNALV 363 (551)
Q Consensus 355 ~~l~dt~gi 363 (551)
+.++||||.
T Consensus 79 ~~liDTpG~ 87 (208)
T cd04166 79 FIIADTPGH 87 (208)
T ss_pred EEEEECCcH
Confidence 999999996
No 420
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.33 E-value=1.5e-06 Score=79.85 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=37.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.|.+..+. ....+..+++. ...+..++. .+.+.||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999988742 12222222221 223444443 46788999964
No 421
>PRK12288 GTPase RsgA; Reviewed
Probab=98.33 E-value=5.9e-07 Score=92.86 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..++|+|++|||||||||+|++...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3689999999999999999999764
No 422
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.33 E-value=5.3e-06 Score=80.16 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=43.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecCCCccccCCceeecCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
.+|+++|.+|+||||++|+|+|...+.+..+..+.|+. ......++..+.++||||+.++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 37999999999999999999999854454455554543 223467889999999999988763
No 423
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.33 E-value=1.4e-06 Score=81.43 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFP 332 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~ 332 (551)
-++++++|.+||||||++|.+.+..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 368999999999999999999988653
No 424
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.32 E-value=1.1e-06 Score=81.82 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..++++++|.+|+||||++|.|.+..+. .+.+..+.. ...+.+++..+.+.||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~~t~g~~-~~~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TISPTLGFQ-IKTLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcCCccccc-eEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999988542 222222211 22234456677899999964
No 425
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.32 E-value=1.1e-06 Score=80.64 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=35.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-eEEEEecCC--CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+|+++|.+||||||++|++.+..+.. ...+.++ . ......++. .+.+.||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999999887432 1112222 1 222333333 455789999654
No 426
>PTZ00258 GTP-binding protein; Provisional
Probab=98.32 E-value=7.3e-07 Score=92.94 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EE--EEec-----------------CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IA--VMYD-----------------EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~--~~~~-----------------~~~~~l~dt~gi~ 364 (551)
...+++++|.|||||||++|+|.+.. +.+++.|+||+. .. +.+. +.++.++||||+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~---~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ---VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc---ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 56789999999999999999998877 799999999952 22 2222 3358899999999
Q ss_pred cCCCCCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 365 DPKKQFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
..... -+.+++ ++...++++|++
T Consensus 97 ~ga~~---g~gLg~----~fL~~Ir~aD~i 119 (390)
T PTZ00258 97 KGASE---GEGLGN----AFLSHIRAVDGI 119 (390)
T ss_pred cCCcc---hhHHHH----HHHHHHHHCCEE
Confidence 54322 123444 444556666643
No 427
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.32 E-value=1.1e-06 Score=78.82 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|+|.+..+. .. .|.. +.+.. .++||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~-~t~~--~~~~~---~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YK-KTQA--VEYND---GAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cc-ccee--EEEcC---eeecCchhh
Confidence 6899999999999999999988631 11 1211 22222 678999973
No 428
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.32 E-value=4.3e-07 Score=85.96 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=80.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC--Cc-------------ccccCCCccc---ceEEEE--ecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF--PG-------------IHIGPEPTTD---RFIAVM--YDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~--~~-------------~~v~~~~~~t---r~~~~~--~~~~~~~l~dt~gi~~ 365 (551)
-..|+++|..++||||++++|++..- .. .+.....+.| ...... ..+..+.++||||-.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 35799999999999999999997731 00 0111112333 234455 678889999999953
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhh
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDR 429 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~ 429 (551)
.|......++..+|. ..|...++ ..++.|+|+||+|.. ++
T Consensus 82 -------------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----------~~- 137 (188)
T PF00009_consen 82 -------------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----------EK- 137 (188)
T ss_dssp -------------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----------HH-
T ss_pred -------------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----------hh-
Confidence 244455555666664 23444444 456779999999994 11
Q ss_pred ccChhhHHHHHHHHH----H-h---ccchhhh--ccchH-HHHHHHHHH
Q psy11743 430 SSTSNSVQAYIISAL----R-K---DMPSVFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 430 ~~~~~~~~~~~~~~l----~-~---~~~~~~~--~~~~~-~~l~~~~~~ 467 (551)
.++...+++.+.+ . . ..|++++ .+|.+ ++|++.+.+
T Consensus 138 --~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 138 --ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp --HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 1111233333222 1 1 2466666 77777 777777755
No 429
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.30 E-value=6.9e-07 Score=88.22 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~ 366 (551)
..+.+|+++|.+||||||++|+|+|... ..++....+|+. ....+++..+.++||||+.+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~--~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK--AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3578999999999999999999999973 556666555542 224456788999999999865
No 430
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.30 E-value=1.6e-06 Score=80.89 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|+++|.+++||||++|+|++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 431
>COG2262 HflX GTPases [General function prediction only]
Probab=98.29 E-value=5.1e-06 Score=85.24 Aligned_cols=138 Identities=23% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC-----cccceEEEEecCCCccccCCceeecCCCCCchhhhhhh
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-----TTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGN 378 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-----~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~ 378 (551)
..-|+|+++|..|+||||+.|.|.+.. +.+.+.. .|||.+.+. ++.++.+.||.|.++.= |..-++.|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~---~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~L-P~~LV~AF-- 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGAD---VYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDL-PHPLVEAF-- 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccC---eeccccccccccCceeEEEeC-CCceEEEecCccCcccC-ChHHHHHH--
Confidence 456899999999999999999999886 3333332 223333222 37889999999998642 33333333
Q ss_pred HHHhhhhhhccccCccc-----------------ccccc---cccceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 379 SFLNRFQCSLVNSPVLK-----------------GKVLQ---TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-----------------~~~~~---~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
..+......+|++. -.++. -.++|.|+|.||.|+. .. .
T Consensus 263 ---ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~----------~~---------~ 320 (411)
T COG2262 263 ---KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL----------ED---------E 320 (411)
T ss_pred ---HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc----------Cc---------h
Confidence 23344444556432 11111 1347889999999971 11 1
Q ss_pred HHHHHHHhccc-hhhh--ccchH-HHHHHHHHHHHH
Q psy11743 439 YIISALRKDMP-SVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 439 ~~~~~l~~~~~-~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.....+....| .+++ ++|.+ +.|...|.+...
T Consensus 321 ~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 321 EILAELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred hhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 12233333333 4455 88889 999999888664
No 432
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.29 E-value=1.2e-06 Score=80.71 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=37.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCC--cccccCCCcccc---eEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFP--GIHIGPEPTTDR---FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~--~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+|+|||||+|.|.+.... +. ......+|. ...+.+++..+.+.||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGL-PPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCC-cccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4789999999999999999875321 11 111222231 23355567888899999975
No 433
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=8.5e-07 Score=92.70 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC-----CCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD-----FPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~-----~~~~~~~~~~tt~~ 94 (551)
...++++|.+|||||||||+|++.. ...++..|++|++.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 3579999999999999999999753 22244556655554
No 434
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.28 E-value=8.7e-07 Score=81.03 Aligned_cols=56 Identities=18% Similarity=0.071 Sum_probs=38.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.|.+.......+.+..+.+. .....++..+.+.||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFEKGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEEECCEEEEEEECCCCH
Confidence 4789999999999999999987532222333333322 2233456678899999965
No 435
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=86.75 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
+..-+++++|.|+||||||+|.|.|.+ +.++..+=||. .....+.+-++.++|+||+..-..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence 445699999999999999999999998 78888887774 444778999999999999987553
No 436
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.28 E-value=2.2e-06 Score=78.91 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=35.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCcee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi 363 (551)
-.+++++|.+|+||||+++++.+..+... .....++.. ...+..++ ..+.+.||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 35899999999999999999987764211 111111111 12233444 35678899994
No 437
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.27 E-value=1.7e-06 Score=79.23 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
.+++++|.+||||||++|.+.+..+.. ....|+. ...+..++. .+.+.||||...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE----KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 579999999999999999999876421 1222221 222334443 345789999653
No 438
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.27 E-value=1.1e-06 Score=90.74 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=55.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecC-----------------CCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDE-----------------REGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~-----------------~~~~l~dt~gi~~~ 366 (551)
++++++|.|||||||+.|+|.+.. +.++..|+||+.. .+.+.+ .++.++|+||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~---~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 589999999999999999999988 7899999999522 223332 24789999999864
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
... -+.+++ ++...++++|++
T Consensus 80 a~~---g~glg~----~fL~~i~~aD~l 100 (364)
T PRK09601 80 ASK---GEGLGN----QFLANIREVDAI 100 (364)
T ss_pred CCh---HHHHHH----HHHHHHHhCCEE
Confidence 321 233444 444556666654
No 439
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.27 E-value=1.9e-06 Score=78.87 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=71.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+++++|.+|+||||++|.+....+.. ....++. ......+ ...+.++||||..... .....++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhh
Confidence 68999999999999999999876421 2222221 1222333 2357788999954321 11111111
Q ss_pred hhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhcc
Q psy11743 383 RFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDM 448 (551)
Q Consensus 383 ~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 448 (551)
.....+.-.|+.. -......+++.++|+||+|++... ... ......+.+.+ ..
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~----------~~~-~~~~~~~~~~~--~~ 137 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR----------QVS-SEEAANLARQW--GV 137 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc----------ccC-HHHHHHHHHHh--CC
Confidence 1111111111110 001113568889999999983210 000 00111222222 24
Q ss_pred chhhh--ccchH-HHHHHHHHHHH
Q psy11743 449 PSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 449 ~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
|.+.+ ++|.+ ++++..+.+.+
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 138 PYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 55555 78888 88888876533
No 440
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.27 E-value=9.7e-07 Score=81.51 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEec--CCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
++++++|.+|+||||++|.|.+..+. ....+... ........ ...+.+.||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47899999999999999999998752 11112111 11112222 33467899999664
No 441
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.27 E-value=1.4e-06 Score=78.40 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=40.2
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEec-CCCccccCCceeecCC
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYD-EREGSVPGNALVVDPK 367 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~-~~~~~l~dt~gi~~~~ 367 (551)
++|.+|+||||++|.|.+... ..++..+++|. ... .... ...+.++||||.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV--AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc--cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 579999999999999999863 33566666664 222 2223 6788999999988755
No 442
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.26 E-value=2.7e-06 Score=77.80 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=38.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~--~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|+|.+..+. ....+.++.+.. ..+.+++ ..+.+.||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 37899999999999999999988742 223333443322 2233333 356788999953
No 443
>KOG1489|consensus
Probab=98.26 E-value=1.9e-06 Score=85.05 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=55.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-e-EEEEecCC-CccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-F-IAVMYDER-EGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~-~~~~~~~~-~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...++++|.||+|||||+|+|.+.+ ..|+.++=|| + + ..+++++. ++.+.|-||++.-.....+ .|..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK---pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG---lG~~-- 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK---PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG---LGYK-- 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC---CcccccceeeeccccceeeccccceeEeccCccccccccccCc---ccHH--
Confidence 3468999999999999999999998 5888888777 4 2 23566554 4899999999975433222 2333
Q ss_pred hhhhhhccccCc
Q psy11743 382 NRFQCSLVNSPV 393 (551)
Q Consensus 382 ~~~~~~~~~~~~ 393 (551)
+.+.|++++.
T Consensus 268 --FLrHiER~~~ 277 (366)
T KOG1489|consen 268 --FLRHIERCKG 277 (366)
T ss_pred --HHHHHHhhce
Confidence 4455666653
No 444
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.26 E-value=2.6e-06 Score=78.00 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=36.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.+++..+ +.....++. ......++. .+.+.||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 5899999999999999999998763 223333332 111233433 46679999964
No 445
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.26 E-value=8e-07 Score=88.69 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=53.9
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCC-----------------CccccCCceeecCCC
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDER-----------------EGSVPGNALVVDPKK 368 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~-----------------~~~l~dt~gi~~~~~ 368 (551)
++++|.|||||||+.|+|.+.. ..++..|+||+. ..+.+.+. ++.++|+||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~---~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~ 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC---CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence 5799999999999999999998 588999999952 22333332 488999999995432
Q ss_pred CCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
. -+.+++.|+ ..++++|++
T Consensus 78 ~---~~glg~~fL----~~i~~~D~l 96 (274)
T cd01900 78 K---GEGLGNKFL----SHIREVDAI 96 (274)
T ss_pred h---hhHHHHHHH----HHHHhCCEE
Confidence 2 234555454 455666643
No 446
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.26 E-value=2.7e-06 Score=78.60 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|.+..+.. ......+.+- ...+...+. .+.+.||||.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 78999999999999999999886421 1111112111 112334333 3457899995
No 447
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.26 E-value=3.5e-06 Score=77.48 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+++++|.+|+||||+++.++...+. ...+.|+. ...+..++.. +.+.||||...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 47999999999999999999976532 22223332 2233444433 45789999743
No 448
>KOG0460|consensus
Probab=98.25 E-value=1.2e-05 Score=80.04 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
+.+.-+|+||+.+ |.+.+..-..+-|..|+|+.+.+ +..++.++.+-..++.+.+ +++-+||+|+++
T Consensus 117 RhYaH~DCPGHAD-----------YIKNMItGaaqMDGaILVVaatD-G~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 117 RHYAHTDCPGHAD-----------YIKNMITGAAQMDGAILVVAATD-GPMPQTREHLLLARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred cccccCCCCchHH-----------HHHHhhcCccccCceEEEEEcCC-CCCcchHHHHHHHHHcCCceEEEEEecccccC
Confidence 6788899999976 55555555678899999999997 8888888888777877766 666779999997
Q ss_pred HHHHHHHHHHHHHHcccccC--CCCceEEEecccC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFW 248 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~ 248 (551)
+.+..+..+-++..+-...+ -...|++.-||+.
T Consensus 185 d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 185 DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence 66654444333332211112 2245777777753
No 449
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.24 E-value=2.6e-06 Score=93.92 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
++|.|+++|.+|+|||||+|+|.+..+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v 29 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV 29 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 578999999999999999999998863
No 450
>KOG0467|consensus
Probab=98.24 E-value=7.8e-06 Score=88.82 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE-ecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS-LVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~-~~~~ 133 (551)
....+.++.+...|||||..+|+-.+--+.+.-. .+-|| ..+.+++ ...|.. -+...+ .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rla--gkirf--ld~rede-q~rgit------------mkss~is~~~~ 70 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLA--GKIRF--LDTREDE-QTRGIT------------MKSSAISLLHK 70 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhc--cceee--ccccchh-hhhcee------------eeccccccccC
Confidence 4467999999999999999999976631111111 11111 1111111 001100 000001 1123
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
++ .+++||+||+.+ |...+..+..-+|..++++|+-. +...+...+++.....+..+++|+||+|.
T Consensus 71 ~~--~~nlidspghvd-----------f~sevssas~l~d~alvlvdvve-gv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 71 DY--LINLIDSPGHVD-----------FSSEVSSASRLSDGALVLVDVVE-GVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred ce--EEEEecCCCccc-----------hhhhhhhhhhhcCCcEEEEeecc-ccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 33 389999999987 77788888899999999999997 99999988888766667889999999994
No 451
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.24 E-value=3.6e-06 Score=79.76 Aligned_cols=53 Identities=26% Similarity=0.226 Sum_probs=35.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCC-Cccc---ceEEEEecC--CCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE-PTTD---RFIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~-~~~t---r~~~~~~~~--~~~~l~dt~gi 363 (551)
+++++|.+|+||||+++.+.+..+. .+.. +.+. ....+..++ ..+.+.||||.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL---NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 6899999999999999999988742 2122 2221 122233443 34667899994
No 452
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.23 E-value=1.6e-06 Score=85.59 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...++++|++|||||||+|+|++...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 45899999999999999999999754
No 453
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.23 E-value=2.6e-06 Score=78.13 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||+++.++...+.... .+... . ...+..++. .+.+.||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999987653211 12111 1 122333443 35679999953
No 454
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.23 E-value=4.9e-06 Score=79.08 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhC--CCCcc-ccc----------CCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER--DFPGI-HIG----------PEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~--~~~~~-~v~----------~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
-+|+++|.+|+||||++|.|++. .+... .+. ...++|. ...+.+++..+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 37999999999999999999973 22111 011 1133332 233455677888999999753
No 455
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.22 E-value=5.2e-06 Score=85.68 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=65.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..+.|||.||+|||||+|+|++.....+..-|.+|.+....+..-++ ..++.+..+-+ ......
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d------~r~d~L~~~~~----------~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSD------PRLDLLAIYIK----------PEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEech------hHHHHHHHHhC----------CcCcCC
Confidence 57899999999999999999998742334445555555544433221 11111111100 000001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.++|.||+..+.... ..........++++|++++|+|+..
T Consensus 67 a~i~~~DiaGlv~gAs~g----~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKG----EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcc----cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 347899999998754322 2234455667799999999999863
No 456
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.22 E-value=4.2e-06 Score=77.13 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.|.+..+..... +..+.+. ...+..++ ..+.+.||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-STVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 479999999999999999999987532111 1112111 11222232 356788999964
No 457
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.21 E-value=2.9e-06 Score=77.40 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|++.+... ....+..+.+ ...+.+.+..+.+.||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~~~-~~~~~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIGFN-VETVEYKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcCcc-eEEEEECCEEEEEEECCCCh
Confidence 478999999999999999998873 1222222222 22244566778899999954
No 458
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.21 E-value=4.2e-06 Score=76.60 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi 363 (551)
.+|+++|.+|+||||++|.+.+..+ .....+..+ +...+..++ ..+.+.||||.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF---SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 3789999999999999999998874 222222222 122233443 35678899994
No 459
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.21 E-value=4.7e-06 Score=78.94 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=35.1
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCCC--ccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~~--~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.+.+..+.. ..+.|+ . ...+..++.. +.+.||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE----TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc----cCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999999776522 122222 1 2223344443 6679999953
No 460
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.21 E-value=3.9e-06 Score=76.80 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=35.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|.|.+..+. ....+..+... ...+..++ ..+.+.||||..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 6899999999999999999988642 11122222221 22233333 345688999953
No 461
>KOG0466|consensus
Probab=98.21 E-value=4.1e-06 Score=81.93 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=101.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCC--------ccccCCCCcccccccccccccc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--------EGSVPFSPLDKFGKFGNSFLNR 125 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~--------~~~i~g~~~~~~~~~g~~~~~~ 125 (551)
++-..|.-+|..-.||||++.++.|-.. +.-..+-.+.-.+-.-|... ...-| ..+..||++.-++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~T--vrFK~ELERNITIKLGYANAKIYkc~~~kCprP----~cy~s~gS~k~d~ 109 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHT--VRFKNELERNITIKLGYANAKIYKCDDPKCPRP----GCYRSFGSSKEDR 109 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceE--EEehhhhhcceeEEeccccceEEecCCCCCCCc----chhhccCCCCCCC
Confidence 3457889999999999999999988431 11111112211111111111 11111 1233466655555
Q ss_pred eeE--EecCC--CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC
Q psy11743 126 FQC--SLVNS--PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH 200 (551)
Q Consensus 126 ~~~--~~~~~--~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~ 200 (551)
+.| +.+++ .+.+++.+||+||++- .+..+..-..--|++++++.+...-..++..+.+..+. -.
T Consensus 110 ~~c~~~g~~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 110 PPCDRPGCEGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred CCcccCCCCCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 444 33332 3458999999999863 34444444455688888888774222233322222222 11
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-+.++++-||+|++.+.+..+.+++...-+ .-......|++++||.-+.++
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I~kFi-~~t~ae~aPiiPisAQlkyNI 229 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQALEQHEQIQKFI-QGTVAEGAPIIPISAQLKYNI 229 (466)
T ss_pred hceEEEEechhhhhhHHHHHHHHHHHHHHH-hccccCCCceeeehhhhccCh
Confidence 367899999999998766544443322111 111334668999999877776
No 462
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.21 E-value=2.4e-06 Score=79.87 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEec--CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~--~~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.+.+..+. ....|.+.. ......+ +..+.++||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV---ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---cccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 37999999999999999999987642 222222211 1122233 2345789999964
No 463
>KOG1491|consensus
Probab=98.20 E-value=2.7e-06 Score=84.79 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc-ccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG-KFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~-~~g~~~~~~~~~~~~~~ 133 (551)
..+++.|||-||||||||+|+|+..... ...-|..|-+.. .....++...|+.+. .||..- .+|
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn------~a~V~v~d~Rfd~l~~~Y~~~~-------~vp- 83 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPN------EARVEVPDSRFDLLCPIYGPKS-------KVP- 83 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccc------cceeecCchHHHHHHHhcCCcc-------eee-
Confidence 4579999999999999999999988753 344444443332 223445555555432 344311 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+++.|.+|+..+..+....+ .....-++.+|.++.|+++..
T Consensus 84 ---a~l~v~DIAGLvkGAs~G~GLG----N~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 ---AFLTVYDIAGLVKGASAGEGLG----NKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ---eeEEEEeecccccCcccCcCch----HHHHHhhhhccceeEEEEecC
Confidence 3489999999998765443333 333445688999999999873
No 464
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.19 E-value=2.6e-06 Score=77.04 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=37.5
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
|+++|.+|+||||++|.|.+..+.. ...|.+.. ...+..++..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE---DTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc---CccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7899999999999999999987531 22232222 23345566678899999953
No 465
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.19 E-value=4.4e-06 Score=76.10 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=34.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|.+..+.. ...+.++. .......+. .+.+.||||-
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE---KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CcCCccceeEEEEEEEECCEEEEEEEEECCch
Confidence 68999999999999999999887421 12222221 122333333 4668899994
No 466
>PLN03118 Rab family protein; Provisional
Probab=98.19 E-value=5.7e-06 Score=79.74 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=39.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+++++|.+||||||++|.|++..+. ...+..+.+.. ..+..++ ..+.+.||||...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 3568999999999999999999988742 23333333222 2233333 3567899999643
No 467
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.19 E-value=5.7e-06 Score=76.54 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=35.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEec--CCCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYD--EREGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~--~~~~~l~dt~gi 363 (551)
.+++++|.+|+||||++|.+.+..+... ..+..+.+.. ..+... ...+.+.||||.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 5899999999999999999998864211 1111222221 222233 235678899994
No 468
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.19 E-value=7.7e-05 Score=76.39 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+++|++|+||||++..|.+.-
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999998753
No 469
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.18 E-value=4.3e-06 Score=77.56 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+++++|.+|+||||+++.+.+..+... ..+.........+..++.. +.+.||||-..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 3689999999999999999998875311 1111111112223344433 45789999654
No 470
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.18 E-value=7.7e-06 Score=77.19 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+.. ...+..+.+. ...+..++. .+.+.||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 379999999999999999999887521 1122222222 222334443 34678999953
No 471
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.18 E-value=3.8e-06 Score=76.92 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP 90 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~ 90 (551)
..+++++|.+|+|||||+|+|.+.....+...++.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~ 135 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGY 135 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe
Confidence 46899999999999999999998765433334443
No 472
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.18 E-value=3.5e-06 Score=77.12 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=34.4
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec----CCCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD----EREGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~----~~~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.+.+..+.. ...+..+... ...+... ...+.+.||||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 68999999999999999999876421 1111111111 1122222 234678899994
No 473
>KOG1487|consensus
Probab=98.18 E-value=4.7e-06 Score=79.95 Aligned_cols=91 Identities=25% Similarity=0.304 Sum_probs=60.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|.++|-|++||||++..|+|...+ +.....+|-.++ +| ..+|..
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~v------------pG-----~~~y~g-------------- 105 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTV------------PG-----VIRYKG-------------- 105 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEe------------cc-----eEeccc--------------
Confidence 3458999999999999999999997632 333332222222 11 111111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+.+.|.||+.++.++.-.++. ++...++.|.++++|+|+-.
T Consensus 106 --aKiqlldlpgiiegakdgkgrg~----qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 106 --AKIQLLDLPGIIEGAKDGKGRGK----QVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred --cceeeecCcchhcccccCCCCcc----EEEEEeecccEEEEEeeccC
Confidence 45899999999998776555543 33345578999999999864
No 474
>PLN03127 Elongation factor Tu; Provisional
Probab=98.17 E-value=2.5e-06 Score=91.35 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=61.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC------CC-------CcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER------DF-------PGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~------~~-------~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
..+.|+++|.+++|||||+++|.+. .. ...+-....|+|.. .....++.++.|+||||..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 4568999999999999999999743 11 11122233566642 22334667899999999752
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQ 415 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~ 415 (551)
|+......+..+|+ ..|...|+ ..++. |+++||||+
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 33333334444553 34544444 34564 567999998
No 475
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.17 E-value=2.8e-06 Score=78.84 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+++++|.+|+||||+++.|....+. ...|++.. ...+...+..+.+.||||..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~----~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc----cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 3578999999999999999999876542 12233222 22334456678889999974
No 476
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.16 E-value=4.3e-06 Score=77.52 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+++++|.+|+||||++|.|.+..+. ...+..+.+. ..+...+..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~--~~~~t~g~~~-~~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS--HITPTQGFNI-KTVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc--ccCCCCCcce-EEEEECCEEEEEEECCCCH
Confidence 4689999999999999999999988642 2222233221 2344556778889999954
No 477
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.16 E-value=6.3e-06 Score=74.39 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=36.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEe--cCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMY--DEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~--~~~~~~l~dt~gi~ 364 (551)
++++++|.+|+||||++|.|.+..+... .....+.+. ...... ....+.+.|+||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 4789999999999999999998874211 111222222 222232 23556788999963
No 478
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.16 E-value=1.4e-06 Score=93.32 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC----------------c------------ccccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP----------------G------------IHIGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~----------------~------------~~v~~~~~~tr~---~~~~~~~~ 353 (551)
..++|+++|.+++|||||+|+|+...-. | .+-...+|+|+. ..+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4568999999999999999999965310 0 011125777762 23455788
Q ss_pred CccccCCceee
Q psy11743 354 EGSVPGNALVV 364 (551)
Q Consensus 354 ~~~l~dt~gi~ 364 (551)
.+.++||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 89999999953
No 479
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.16 E-value=3.4e-06 Score=84.91 Aligned_cols=61 Identities=7% Similarity=0.108 Sum_probs=46.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~ 366 (551)
....+|+++|.+||||||++|+|+|+.. ..++....++. . .....++..+.++||||+.+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v--~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERI--ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 3568999999999999999999999973 34555554442 1 223457888999999999875
No 480
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.15 E-value=5.7e-06 Score=79.08 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEec-CC--CccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYD-ER--EGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~-~~--~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.+.+..+.. ...|... . ...+..+ +. .+.+.||||..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~---~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ---HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 68999999999999999999876421 1122221 1 1223333 33 45678999963
No 481
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.15 E-value=8.1e-06 Score=75.27 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=35.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~ 364 (551)
-.+++++|.+|+||||+++.+.+..+. ....++.+. ...+.+.+.. +.+.||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 368999999999999999999976532 111222221 1123344433 5667999853
No 482
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.14 E-value=1.7e-05 Score=83.76 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=44.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+... ...+|.+++|+|+.. +- .....++...+.-.+.-+|+||.|..
T Consensus 183 ~DvViIDTaGr~~~d~~-------lm~El~~i~~~~~p~e~lLVlda~~-Gq--~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDS-------LFEEMLQVAEAIQPDNIIFVMDGSI-GQ--AAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHH-------HHHHHHHHhhhcCCcEEEEEecccc-Ch--hHHHHHHHHHhccCCcEEEEECccCC
Confidence 46899999997653221 23333332 246789999999873 32 22345555554445678899999986
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 53
No 483
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.14 E-value=6.8e-06 Score=76.00 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=37.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+++++|.+|+||||+++.+.+..+.... .+..+..- ...+..++.. +.+.||||..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc-CCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 3478999999999999999999987653211 11112111 2223344443 4567999954
No 484
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.14 E-value=9.2e-06 Score=77.60 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=37.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..+|+++|.+||||||+++.+.+..+.. ...+..+.. ....+..++. .+.+.||||..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 4689999999999999999999886531 111111211 1122333332 46688999953
No 485
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.14 E-value=4.8e-06 Score=92.18 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=78.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
.|+++|.+|+||||++|+|.+......+-...+|.|. +..+..++..+.++||||.. +|.. ..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~----~~ 67 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------KFIS----NA 67 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------HHHH----HH
Confidence 5899999999999999999986522223233445553 22344566778899999942 2322 22
Q ss_pred hhhccccC-------cccccc---------cccccce-eEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH--
Q psy11743 385 QCSLVNSP-------VLKGKV---------LQTPEVA-RVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR-- 445 (551)
Q Consensus 385 ~~~~~~~~-------~~~~~~---------~~~~~~~-~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-- 445 (551)
......+| +..|.. .....++ .++|+||+|+.- ++ .++...+++.+.+.
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~----------~~--~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN----------EE--EIKRTEMFMKQILNSY 135 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC----------HH--HHHHHHHHHHHHHHHh
Confidence 22223333 222221 2224567 788899999831 11 11112222333222
Q ss_pred ---hccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 446 ---KDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 446 ---~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
..+|++.+ ++|.+ +++.+.+....+.
T Consensus 136 ~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 136 IFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 13566655 77888 8888777665543
No 486
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.14 E-value=5.6e-06 Score=77.97 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=35.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEec-CC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYD-ER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~-~~--~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|.+.+..+... ..|.... ...+... +. .+.+.||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~---~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE---YVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC---CCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 4799999999999999999998875321 1122111 1122232 22 35678999953
No 487
>PRK00007 elongation factor G; Reviewed
Probab=98.14 E-value=4.7e-06 Score=94.46 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CCcc-ccc------------CCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FPGI-HIG------------PEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~~~-~v~------------~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+...|+++|.+|+|||||+|.|+... .... .+. ...++|. .....+.+.++.++||||..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 34589999999999999999998532 0000 011 2345553 344667899999999999653
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|......++..+| +..|...|+ ..++.++++||||.+
T Consensus 88 -------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 88 -------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred -------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 2233444555554 345655555 346779999999984
No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.13 E-value=3.9e-05 Score=76.85 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=41.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH---HHh-----ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW---FAE-----RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~---~~~-----~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+++|||||....... ....+.. .+. .+|.+++|+|+.. + ...........+.-...-+|+
T Consensus 155 ~D~ViIDT~G~~~~d~~-------~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~-~--~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVN-------LMDELKKIKRVIKKVDKDAPDEVLLVLDATT-G--QNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHH-------HHHHHHHHHHHHhcccCCCCceEEEEEECCC-C--HHHHHHHHHHHhhCCCCEEEE
Confidence 46899999998763221 1222222 222 3899999999973 2 222222333222223567899
Q ss_pred cCCCCCCH
Q psy11743 209 NKADMVDH 216 (551)
Q Consensus 209 NK~Dl~~~ 216 (551)
||+|....
T Consensus 225 TKlDe~~~ 232 (272)
T TIGR00064 225 TKLDGTAK 232 (272)
T ss_pred EccCCCCC
Confidence 99998754
No 489
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.12 E-value=8.9e-06 Score=75.61 Aligned_cols=54 Identities=20% Similarity=0.078 Sum_probs=35.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|++++..+..- ..|.... ...+..++ ..+.+.||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN---YKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 689999999999999999999875321 1122211 12233333 346788999964
No 490
>KOG1424|consensus
Probab=98.12 E-value=2.6e-06 Score=89.04 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
..+|.+||.|||||||+||+|.|.+.-.|+.+||-|..-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF 352 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF 352 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee
Confidence 578999999999999999999999986666666665433
No 491
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.12 E-value=5.3e-06 Score=76.99 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=34.7
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCC--CccccCCceee
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~--~~~l~dt~gi~ 364 (551)
++++|.+||||||+++.+.+..+.. ...+... ....+..++. .+.+.||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE---DYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC---CCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999987532 1122221 1222334444 36678999964
No 492
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.12 E-value=9.5e-06 Score=78.51 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=35.4
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c--eEEEEecC---CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R--FIAVMYDE---REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r--~~~~~~~~---~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|.|.+..+.. ...|..+ . ...+..++ ..+.+.||||..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~---~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK---SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC---CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 68999999999999999999886521 2222222 1 12233322 345688999953
No 493
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.12 E-value=4.5e-06 Score=77.54 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=36.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||+++.+.+..+.... .+..+......+..++. .+.+.||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 47999999999999999999988753211 11111111222334433 45688999964
No 494
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.12 E-value=6.2e-06 Score=82.58 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred EEEEEeecCCChhHHHHHHHhCCC--Cc-------c------cccCCCcccc---eEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDF--PG-------I------HIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~--~~-------~------~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+++|.+|+|||||+|+|+...- .. . +.....++|. .....+++.++.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 379999999999999999985420 00 0 1111234442 234667889999999999764
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|.....+++..+| ...|...++ ..++.++++||||.+
T Consensus 77 ----------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 77 ----------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred ----------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 1122333333333 333433222 456779999999983
No 495
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.11 E-value=7.2e-06 Score=75.17 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEec--CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
++|+++|.+||||||++|+|.+..+.. ...|..+ . ...+..+ ...+.+.||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 379999999999999999999987532 2222222 1 1122333 3456688999963
No 496
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.11 E-value=6.5e-06 Score=75.77 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCC--CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+++++|.+|+||||++++++...+. +..+.++ . ...+..++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI----GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc----cccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999876542 2222222 1 222334444 366899999764
No 497
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.11 E-value=3.6e-06 Score=76.99 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|.|....+.. ..|... ....+...+..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC----cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence 47899999999999999998766421 122221 122344456678899999975
No 498
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.10 E-value=1e-05 Score=74.65 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=35.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc----eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr----~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||+++.+.+..+. ...+.|.. ...+..++. .+.+.||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 47999999999999999999988652 11222221 112333333 45678999953
No 499
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.09 E-value=1.5e-05 Score=76.99 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEe-cCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMY-DER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~-~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+... ..|..+. . ..+.. ++. .+.+.||||..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~---~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV---SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 5799999999999999999998875321 1122221 1 11222 232 46688999953
No 500
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.09 E-value=8.3e-06 Score=76.77 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEe---cCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMY---DEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~---~~~~~~l~dt~gi~ 364 (551)
.+.+++++|.+||||||++|++.+..+.. ..|..+ ....+.. .+..+.+.||||..
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN----TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC----cCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 35789999999999999999999876431 123221 1222332 23457789999953
Done!