Query psy11743
Match_columns 551
No_of_seqs 595 out of 3933
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:48:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpt_A EH domain-containing pr 100.0 9.3E-38 3.2E-42 340.4 29.8 251 1-251 8-268 (550)
2 2hjg_A GTP-binding protein ENG 100.0 7.1E-37 2.4E-41 326.0 21.0 328 55-475 2-353 (436)
3 1mky_A Probable GTP-binding pr 100.0 1.1E-35 3.6E-40 317.2 25.7 332 57-475 2-359 (439)
4 4dcu_A GTP-binding protein ENG 100.0 6.6E-36 2.3E-40 320.3 19.7 331 52-475 19-373 (456)
5 2hjg_A GTP-binding protein ENG 99.9 1.1E-23 3.7E-28 224.2 14.0 239 55-341 174-433 (436)
6 4dcu_A GTP-binding protein ENG 99.9 5.5E-23 1.9E-27 220.0 15.3 241 54-341 193-453 (456)
7 1mky_A Probable GTP-binding pr 99.9 2.1E-21 7.2E-26 206.7 16.2 240 55-340 179-435 (439)
8 3iev_A GTP-binding protein ERA 99.8 8.1E-19 2.8E-23 178.0 16.4 159 55-252 9-169 (308)
9 4dhe_A Probable GTP-binding pr 99.8 2.5E-18 8.5E-23 165.3 17.4 165 54-252 27-198 (223)
10 1wf3_A GTP-binding protein; GT 99.8 1.2E-18 4.1E-23 176.0 15.5 151 56-252 7-160 (301)
11 1puj_A YLQF, conserved hypothe 99.8 1.8E-18 6.2E-23 172.9 14.9 177 142-368 4-180 (282)
12 3pqc_A Probable GTP-binding pr 99.8 2.3E-17 8E-22 154.4 18.6 158 54-252 21-181 (195)
13 1svi_A GTP-binding protein YSX 99.8 1.4E-17 4.9E-22 156.3 16.6 158 54-252 21-182 (195)
14 1x3s_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 155.7 10.9 147 55-252 14-165 (195)
15 1ega_A Protein (GTP-binding pr 99.7 4.6E-17 1.6E-21 164.5 12.1 153 56-252 8-162 (301)
16 3ec1_A YQEH GTPase; atnos1, at 99.7 4.8E-17 1.6E-21 168.9 11.1 157 161-367 61-226 (369)
17 3iby_A Ferrous iron transport 99.7 2.9E-17 9.8E-22 162.1 8.7 151 57-252 2-154 (256)
18 2dyk_A GTP-binding protein; GT 99.7 2E-16 6.8E-21 143.2 13.4 148 57-252 2-149 (161)
19 2lkc_A Translation initiation 99.7 8.8E-17 3E-21 148.3 10.3 150 54-252 6-158 (178)
20 4bas_A ADP-ribosylation factor 99.7 1E-16 3.5E-21 150.8 10.7 149 53-252 14-176 (199)
21 3q72_A GTP-binding protein RAD 99.7 4.2E-17 1.4E-21 148.7 7.8 146 56-252 2-151 (166)
22 3cnl_A YLQF, putative uncharac 99.7 6.9E-17 2.4E-21 159.7 9.8 149 161-368 11-159 (262)
23 3i8s_A Ferrous iron transport 99.7 3.2E-17 1.1E-21 163.5 7.3 152 55-252 2-156 (274)
24 2ce2_X GTPase HRAS; signaling 99.7 2.8E-16 9.5E-21 142.4 12.7 146 56-252 3-152 (166)
25 4dsu_A GTPase KRAS, isoform 2B 99.7 4.4E-16 1.5E-20 144.9 13.7 146 56-252 4-153 (189)
26 1c1y_A RAS-related protein RAP 99.7 2.1E-16 7E-21 143.9 11.2 147 56-252 3-154 (167)
27 1jwy_B Dynamin A GTPase domain 99.7 1.8E-16 6.3E-21 160.9 11.7 161 55-217 23-214 (315)
28 1upt_A ARL1, ADP-ribosylation 99.7 5.6E-16 1.9E-20 141.8 13.8 146 55-252 6-156 (171)
29 2gf9_A RAS-related protein RAB 99.7 1E-16 3.5E-21 149.9 9.1 150 52-252 18-172 (189)
30 3t5g_A GTP-binding protein RHE 99.7 9E-17 3.1E-21 148.9 8.4 146 56-252 6-156 (181)
31 2aka_B Dynamin-1; fusion prote 99.7 2.4E-16 8.1E-21 158.6 11.9 191 55-252 25-240 (299)
32 3zvr_A Dynamin-1; hydrolase, D 99.7 5.3E-16 1.8E-20 172.5 15.7 193 54-252 49-265 (772)
33 2nzj_A GTP-binding protein REM 99.7 2.4E-16 8.2E-21 144.8 10.9 149 55-252 3-156 (175)
34 1r8s_A ADP-ribosylation factor 99.7 9.6E-16 3.3E-20 139.3 14.7 144 57-252 1-149 (164)
35 2g6b_A RAS-related protein RAB 99.7 2.5E-16 8.7E-21 145.4 10.9 149 55-252 9-161 (180)
36 1u8z_A RAS-related protein RAL 99.7 3.4E-16 1.2E-20 142.3 11.4 146 55-252 3-154 (168)
37 2efe_B Small GTP-binding prote 99.7 4.4E-16 1.5E-20 143.9 12.2 147 55-252 11-162 (181)
38 3h2y_A GTPase family protein; 99.7 1E-16 3.6E-21 166.2 8.8 158 160-367 58-225 (368)
39 1z0j_A RAB-22, RAS-related pro 99.7 3.8E-16 1.3E-20 142.6 11.4 147 55-252 5-156 (170)
40 1z0f_A RAB14, member RAS oncog 99.7 4.7E-16 1.6E-20 143.2 11.9 148 54-252 13-165 (179)
41 4djt_A GTP-binding nuclear pro 99.7 2.7E-17 9.1E-22 157.6 3.6 149 55-252 10-162 (218)
42 2qu8_A Putative nucleolar GTP- 99.7 7.9E-16 2.7E-20 148.7 14.0 156 55-252 28-192 (228)
43 3con_A GTPase NRAS; structural 99.7 2.8E-16 9.5E-21 146.9 10.4 147 54-252 19-170 (190)
44 1kao_A RAP2A; GTP-binding prot 99.7 2.8E-16 9.4E-21 142.8 10.0 146 55-252 2-153 (167)
45 1zd9_A ADP-ribosylation factor 99.7 7.5E-16 2.6E-20 144.1 13.2 148 55-252 21-172 (188)
46 2fn4_A P23, RAS-related protei 99.6 6.5E-16 2.2E-20 142.6 12.3 147 55-252 8-159 (181)
47 2gj8_A MNME, tRNA modification 99.6 6.6E-16 2.2E-20 142.6 12.3 147 56-252 4-153 (172)
48 3bc1_A RAS-related protein RAB 99.6 5.3E-16 1.8E-20 144.8 11.7 155 54-252 9-172 (195)
49 1zbd_A Rabphilin-3A; G protein 99.6 7.2E-16 2.5E-20 145.8 12.3 147 55-252 7-158 (203)
50 1g16_A RAS-related protein SEC 99.6 1.8E-16 6.2E-21 144.7 7.9 147 56-252 3-152 (170)
51 3tkl_A RAS-related protein RAB 99.6 2.7E-16 9.1E-21 147.5 9.1 148 54-252 14-166 (196)
52 2oil_A CATX-8, RAS-related pro 99.6 2.9E-16 9.8E-21 147.3 9.3 146 54-252 23-175 (193)
53 2erx_A GTP-binding protein DI- 99.6 2.6E-16 9E-21 143.8 8.7 145 56-252 3-154 (172)
54 2fg5_A RAB-22B, RAS-related pr 99.6 4.1E-16 1.4E-20 146.4 10.2 150 52-252 19-173 (192)
55 2bov_A RAla, RAS-related prote 99.6 1.1E-15 3.6E-20 144.6 13.0 147 54-252 12-164 (206)
56 3clv_A RAB5 protein, putative; 99.6 1.1E-15 3.8E-20 143.6 13.1 176 55-252 6-191 (208)
57 3a1s_A Iron(II) transport prot 99.6 3.1E-16 1.1E-20 154.8 9.7 148 56-252 5-154 (258)
58 2a9k_A RAS-related protein RAL 99.6 7.9E-16 2.7E-20 142.7 11.9 147 54-252 16-168 (187)
59 1zj6_A ADP-ribosylation factor 99.6 1.5E-15 5.1E-20 141.7 13.8 146 55-252 15-165 (187)
60 1r2q_A RAS-related protein RAB 99.6 5.7E-16 2E-20 141.2 10.6 147 55-252 5-156 (170)
61 3llu_A RAS-related GTP-binding 99.6 2.7E-15 9.2E-20 141.3 15.6 153 53-252 17-184 (196)
62 3cph_A RAS-related protein SEC 99.6 4.8E-16 1.7E-20 147.9 10.3 148 54-252 18-169 (213)
63 2h17_A ADP-ribosylation factor 99.6 6.2E-16 2.1E-20 143.6 10.7 148 54-252 19-170 (181)
64 3sjy_A Translation initiation 99.6 7.2E-15 2.5E-19 154.5 19.9 170 54-252 6-179 (403)
65 1z2a_A RAS-related protein RAB 99.6 4E-16 1.4E-20 142.2 8.9 145 55-252 4-154 (168)
66 2y8e_A RAB-protein 6, GH09086P 99.6 4E-16 1.4E-20 143.7 8.9 146 55-252 13-164 (179)
67 2il1_A RAB12; G-protein, GDP, 99.6 2.5E-16 8.7E-21 147.9 7.6 150 54-252 24-177 (192)
68 1ek0_A Protein (GTP-binding pr 99.6 5.4E-16 1.9E-20 141.4 9.6 146 56-252 3-156 (170)
69 2h57_A ADP-ribosylation factor 99.6 7.8E-16 2.7E-20 144.1 10.9 150 54-252 19-174 (190)
70 2j69_A Bacterial dynamin-like 99.6 9.4E-16 3.2E-20 171.5 13.3 152 54-216 67-245 (695)
71 3tw8_B RAS-related protein RAB 99.6 1.3E-16 4.5E-21 147.3 5.2 148 54-252 7-158 (181)
72 3j2k_7 ERF3, eukaryotic polype 99.6 5.9E-15 2E-19 156.7 18.5 103 137-252 95-212 (439)
73 3t5d_A Septin-7; GTP-binding p 99.6 2.9E-15 1E-19 149.2 15.2 158 56-252 8-191 (274)
74 2gf0_A GTP-binding protein DI- 99.6 1.1E-15 3.8E-20 143.6 11.5 146 55-252 7-158 (199)
75 2wji_A Ferrous iron transport 99.6 7.7E-16 2.6E-20 141.0 10.1 148 56-252 3-152 (165)
76 1ksh_A ARF-like protein 2; sma 99.6 9.8E-16 3.4E-20 142.6 10.9 146 55-252 17-167 (186)
77 3b1v_A Ferrous iron uptake tra 99.6 5.3E-16 1.8E-20 154.2 9.6 147 56-252 3-151 (272)
78 2fh5_B SR-beta, signal recogni 99.6 5E-15 1.7E-19 141.2 16.0 115 55-216 6-130 (214)
79 1xzp_A Probable tRNA modificat 99.6 1.7E-15 5.7E-20 162.1 13.9 149 56-252 243-392 (482)
80 1fzq_A ADP-ribosylation factor 99.6 2.1E-15 7.2E-20 140.3 12.5 146 55-252 15-165 (181)
81 2cxx_A Probable GTP-binding pr 99.6 4.2E-15 1.4E-19 138.5 14.4 156 57-252 2-171 (190)
82 2a5j_A RAS-related protein RAB 99.6 6.8E-16 2.3E-20 144.7 9.1 148 54-252 19-171 (191)
83 3dz8_A RAS-related protein RAB 99.6 3.7E-16 1.3E-20 146.5 7.1 151 52-252 19-173 (191)
84 3o47_A ADP-ribosylation factor 99.6 2.2E-15 7.7E-20 154.0 13.4 184 17-252 119-314 (329)
85 2p5s_A RAS and EF-hand domain 99.6 2.2E-15 7.4E-20 142.3 12.3 148 54-252 26-184 (199)
86 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.6E-15 5.5E-20 139.6 11.1 149 55-252 6-161 (177)
87 1z08_A RAS-related protein RAB 99.6 7E-16 2.4E-20 141.0 8.5 145 55-252 5-156 (170)
88 3kkq_A RAS-related protein M-R 99.6 2.8E-15 9.5E-20 139.0 12.6 146 55-252 17-169 (183)
89 3oes_A GTPase rhebl1; small GT 99.6 2.7E-16 9.2E-21 148.8 5.7 147 54-252 22-174 (201)
90 2xtp_A GTPase IMAP family memb 99.6 7.6E-16 2.6E-20 152.0 9.1 127 54-216 20-154 (260)
91 1m2o_B GTP-binding protein SAR 99.6 3E-15 1E-19 140.5 12.4 146 55-252 22-179 (190)
92 1ky3_A GTP-binding protein YPT 99.6 9.1E-16 3.1E-20 141.7 8.8 150 55-252 7-165 (182)
93 1z06_A RAS-related protein RAB 99.6 1.3E-15 4.5E-20 142.4 9.9 145 54-249 18-169 (189)
94 3gee_A MNME, tRNA modification 99.6 8.6E-16 2.9E-20 164.2 9.5 150 55-252 232-385 (476)
95 2bme_A RAB4A, RAS-related prot 99.6 9.3E-16 3.2E-20 142.6 8.5 146 54-252 8-160 (186)
96 1wb1_A Translation elongation 99.6 2E-15 6.7E-20 162.1 12.2 151 54-252 17-176 (482)
97 3q85_A GTP-binding protein REM 99.6 8E-16 2.7E-20 140.6 7.9 146 57-252 3-154 (169)
98 2bcg_Y Protein YP2, GTP-bindin 99.6 9.3E-16 3.2E-20 145.4 8.6 148 54-252 6-158 (206)
99 2b6h_A ADP-ribosylation factor 99.6 2.2E-15 7.6E-20 141.6 11.1 147 54-252 27-178 (192)
100 3k53_A Ferrous iron transport 99.6 1.2E-15 4.2E-20 151.6 9.5 149 55-252 2-153 (271)
101 2x77_A ADP-ribosylation factor 99.6 1.3E-15 4.5E-20 142.2 8.9 146 55-252 21-171 (189)
102 4gzl_A RAS-related C3 botulinu 99.6 9.4E-16 3.2E-20 145.6 8.0 152 54-252 28-192 (204)
103 1f6b_A SAR1; gtpases, N-termin 99.6 2.9E-15 1E-19 141.6 11.3 149 55-252 24-186 (198)
104 2hxs_A RAB-26, RAS-related pro 99.6 1.5E-15 5.2E-20 139.9 9.1 146 55-252 5-160 (178)
105 1moz_A ARL1, ADP-ribosylation 99.6 1.1E-15 3.9E-20 141.5 8.3 145 55-252 17-167 (183)
106 2ew1_A RAS-related protein RAB 99.6 1.5E-15 5.1E-20 144.1 8.8 146 54-252 24-176 (201)
107 1vg8_A RAS-related protein RAB 99.6 1.2E-15 4.2E-20 144.4 8.0 149 55-252 7-162 (207)
108 2atx_A Small GTP binding prote 99.6 2.8E-15 9.7E-20 140.6 10.4 147 55-252 17-180 (194)
109 2hup_A RAS-related protein RAB 99.6 2.9E-15 9.8E-20 141.9 10.5 147 54-252 27-180 (201)
110 3qq5_A Small GTP-binding prote 99.6 1.2E-15 4.2E-20 160.4 7.9 152 54-252 32-183 (423)
111 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.3E-15 4.3E-20 141.4 7.1 149 55-252 4-167 (186)
112 3reg_A RHO-like small GTPase; 99.6 1.2E-15 4.1E-20 143.3 6.7 146 55-252 22-175 (194)
113 3p26_A Elongation factor 1 alp 99.6 1.6E-14 5.5E-19 155.3 16.1 102 137-252 111-225 (483)
114 2iwr_A Centaurin gamma 1; ANK 99.6 9.5E-15 3.2E-19 134.8 12.3 136 55-252 6-156 (178)
115 2o52_A RAS-related protein RAB 99.6 1.6E-15 5.5E-20 143.5 7.2 148 54-252 23-175 (200)
116 3lxx_A GTPase IMAP family memb 99.6 1.4E-15 4.7E-20 148.3 6.8 131 54-219 27-163 (239)
117 3geh_A MNME, tRNA modification 99.6 2E-15 6.8E-20 160.8 8.6 149 55-252 223-371 (462)
118 2fv8_A H6, RHO-related GTP-bin 99.6 2.6E-15 8.8E-20 142.7 8.3 150 55-252 24-187 (207)
119 4dkx_A RAS-related protein RAB 99.6 9.7E-15 3.3E-19 140.2 12.3 147 54-252 11-163 (216)
120 2gco_A H9, RHO-related GTP-bin 99.6 4.8E-15 1.7E-19 140.2 9.9 150 55-252 24-187 (201)
121 3cbq_A GTP-binding protein REM 99.6 8.1E-15 2.8E-19 138.2 11.4 148 54-252 21-175 (195)
122 2j0v_A RAC-like GTP-binding pr 99.6 4.5E-15 1.6E-19 141.3 9.5 147 55-252 8-167 (212)
123 3ihw_A Centg3; RAS, centaurin, 99.6 2.8E-14 9.6E-19 133.1 14.7 141 54-252 18-167 (184)
124 2yc2_C IFT27, small RAB-relate 99.6 2.1E-15 7.2E-20 142.6 7.1 147 55-252 19-179 (208)
125 3t1o_A Gliding protein MGLA; G 99.6 2.3E-14 7.9E-19 134.0 14.1 153 55-252 13-179 (198)
126 2atv_A RERG, RAS-like estrogen 99.6 1.1E-14 3.6E-19 137.1 11.8 144 55-252 27-178 (196)
127 3izq_1 HBS1P, elongation facto 99.6 1.6E-14 5.4E-19 159.1 14.8 103 137-253 245-360 (611)
128 2fu5_C RAS-related protein RAB 99.6 5.3E-16 1.8E-20 144.0 2.4 145 55-252 7-158 (183)
129 3cpj_B GTP-binding protein YPT 99.6 1.5E-15 5E-20 146.3 5.6 147 55-252 12-163 (223)
130 2j1l_A RHO-related GTP-binding 99.6 6.7E-15 2.3E-19 140.8 10.2 150 55-252 33-196 (214)
131 2wjg_A FEOB, ferrous iron tran 99.6 5E-15 1.7E-19 137.9 9.0 150 54-252 5-156 (188)
132 2f7s_A C25KG, RAS-related prot 99.6 1.9E-15 6.5E-20 144.5 6.2 157 53-252 22-186 (217)
133 3lxw_A GTPase IMAP family memb 99.6 6.2E-15 2.1E-19 144.6 10.0 124 54-215 19-153 (247)
134 3bwd_D RAC-like GTP-binding pr 99.6 2.2E-15 7.7E-20 139.3 6.3 147 55-252 7-168 (182)
135 3r7w_A Gtpase1, GTP-binding pr 99.6 1.3E-14 4.3E-19 147.0 12.2 154 56-248 3-165 (307)
136 2e87_A Hypothetical protein PH 99.6 4E-14 1.4E-18 146.4 16.1 154 55-252 166-323 (357)
137 1zun_B Sulfate adenylate trans 99.6 5.7E-14 1.9E-18 149.1 17.6 102 137-252 104-211 (434)
138 2q3h_A RAS homolog gene family 99.5 8.7E-15 3E-19 138.0 9.0 147 54-252 18-182 (201)
139 1nrj_B SR-beta, signal recogni 99.5 8.6E-15 2.9E-19 140.0 8.9 114 54-216 10-135 (218)
140 3iev_A GTP-binding protein ERA 99.5 3E-15 1E-19 151.7 6.0 186 306-549 10-219 (308)
141 1lnz_A SPO0B-associated GTP-bi 99.5 7.4E-15 2.5E-19 150.5 8.4 152 56-252 158-317 (342)
142 3c5c_A RAS-like protein 12; GD 99.5 1E-14 3.4E-19 136.4 8.5 144 55-252 20-173 (187)
143 3lvq_E ARF-GAP with SH3 domain 99.5 2.1E-14 7.1E-19 155.2 11.6 146 55-252 321-471 (497)
144 3q3j_B RHO-related GTP-binding 99.5 1.6E-14 5.6E-19 138.2 9.4 116 54-215 25-145 (214)
145 2x2e_A Dynamin-1; nitration, h 99.5 1E-14 3.5E-19 150.6 8.5 191 55-252 30-245 (353)
146 2elf_A Protein translation elo 99.5 7.8E-14 2.7E-18 144.6 14.5 138 58-252 23-167 (370)
147 3izy_P Translation initiation 99.5 9.3E-16 3.2E-20 165.4 -0.2 151 55-252 3-155 (537)
148 3gj0_A GTP-binding nuclear pro 99.5 3.1E-15 1E-19 143.7 3.3 147 54-252 13-162 (221)
149 3t34_A Dynamin-related protein 99.5 5.7E-14 1.9E-18 145.4 13.0 161 55-217 33-219 (360)
150 3cb4_D GTP-binding protein LEP 99.5 4.3E-14 1.5E-18 154.7 12.4 143 137-329 71-216 (599)
151 3th5_A RAS-related C3 botulinu 99.3 1.2E-15 4.1E-20 144.5 0.0 153 55-252 29-192 (204)
152 3tr5_A RF-3, peptide chain rel 99.5 6.1E-14 2.1E-18 151.7 13.1 67 137-215 82-148 (528)
153 2c78_A Elongation factor TU-A; 99.5 4.7E-14 1.6E-18 148.4 11.7 102 137-252 75-181 (405)
154 1pui_A ENGB, probable GTP-bind 99.5 2.6E-13 8.7E-18 128.8 15.1 157 53-252 23-186 (210)
155 2g3y_A GTP-binding protein GEM 99.5 2.8E-14 9.7E-19 136.4 8.3 150 55-252 36-190 (211)
156 3mca_A HBS1, elongation factor 99.5 4.3E-15 1.5E-19 163.2 2.7 104 137-253 255-371 (592)
157 1h65_A Chloroplast outer envel 99.5 2E-13 6.7E-18 135.6 14.1 124 56-216 39-169 (270)
158 3l0i_B RAS-related protein RAB 99.5 2.1E-16 7.2E-21 149.3 -7.2 148 54-252 31-183 (199)
159 2ged_A SR-beta, signal recogni 99.5 4.8E-14 1.6E-18 131.9 8.8 120 54-218 46-173 (193)
160 3def_A T7I23.11 protein; chlor 99.5 2.7E-13 9.3E-18 134.0 14.6 124 55-215 35-165 (262)
161 1m7b_A RND3/RHOE small GTP-bin 99.5 3.1E-14 1.1E-18 132.4 7.0 116 55-215 6-125 (184)
162 1kk1_A EIF2gamma; initiation o 99.5 2.1E-13 7.1E-18 143.7 14.2 168 56-252 10-187 (410)
163 1u0l_A Probable GTPase ENGC; p 99.5 1.3E-13 4.6E-18 139.0 11.9 168 138-369 64-237 (301)
164 1f60_A Elongation factor EEF1A 99.5 4.3E-14 1.5E-18 150.9 8.5 103 137-253 85-200 (458)
165 1gwn_A RHO-related GTP-binding 99.5 4.5E-14 1.6E-18 134.2 7.4 117 54-215 26-146 (205)
166 1d2e_A Elongation factor TU (E 99.5 8.7E-14 3E-18 145.9 10.1 101 137-251 66-171 (397)
167 2zej_A Dardarin, leucine-rich 99.5 1.3E-13 4.6E-18 128.3 10.1 158 56-252 2-165 (184)
168 2qtf_A Protein HFLX, GTP-bindi 99.5 2.3E-13 7.8E-18 140.7 12.6 156 56-252 179-341 (364)
169 1jny_A EF-1-alpha, elongation 99.5 2.8E-13 9.5E-18 143.8 13.5 102 137-252 84-200 (435)
170 1g7s_A Translation initiation 99.5 1.2E-13 4.2E-18 151.2 10.8 131 55-215 4-136 (594)
171 2cjw_A GTP-binding protein GEM 99.5 5.9E-14 2E-18 131.9 7.1 149 56-252 6-159 (192)
172 1s0u_A EIF-2-gamma, translatio 99.5 2.2E-13 7.4E-18 143.4 12.2 166 55-252 7-185 (408)
173 2yv5_A YJEQ protein; hydrolase 99.4 1.2E-12 4.1E-17 132.1 15.7 146 167-367 75-230 (302)
174 1zo1_I IF2, translation initia 99.4 1.2E-14 3.9E-19 155.6 0.9 150 55-252 3-154 (501)
175 1r5b_A Eukaryotic peptide chai 99.4 2.1E-13 7.2E-18 145.9 10.5 102 137-252 121-239 (467)
176 2ywe_A GTP-binding protein LEP 99.4 7E-13 2.4E-17 144.8 14.3 99 137-252 73-171 (600)
177 1t9h_A YLOQ, probable GTPase E 99.4 3E-13 1E-17 136.0 9.4 146 167-367 82-238 (307)
178 2wkq_A NPH1-1, RAS-related C3 99.4 1.7E-13 5.7E-18 139.5 7.5 150 55-252 154-317 (332)
179 1wxq_A GTP-binding protein; st 99.4 2E-13 6.9E-18 142.7 7.7 111 57-183 1-113 (397)
180 1wf3_A GTP-binding protein; GT 99.4 2.2E-13 7.5E-18 137.4 7.7 185 306-550 7-212 (301)
181 3avx_A Elongation factor TS, e 99.4 1.1E-12 3.7E-17 150.1 12.1 100 137-250 359-463 (1289)
182 3dpu_A RAB family protein; roc 99.4 6.1E-13 2.1E-17 144.9 9.8 152 55-252 40-195 (535)
183 4a9a_A Ribosome-interacting GT 99.4 9.9E-13 3.4E-17 135.7 10.1 119 55-213 71-194 (376)
184 2h5e_A Peptide chain release f 99.3 5.5E-12 1.9E-16 136.5 14.3 136 55-216 12-149 (529)
185 2f9l_A RAB11B, member RAS onco 99.3 1.8E-12 6.1E-17 122.2 8.4 145 56-252 5-155 (199)
186 1ega_A Protein (GTP-binding pr 99.3 2E-13 7E-18 137.7 1.6 58 305-364 7-67 (301)
187 2dy1_A Elongation factor G; tr 99.3 1.3E-11 4.5E-16 137.4 15.9 133 54-214 7-139 (665)
188 2www_A Methylmalonic aciduria 99.3 5.2E-12 1.8E-16 130.0 11.7 97 137-252 167-266 (349)
189 3c5h_A Glucocorticoid receptor 99.3 3.1E-12 1E-16 125.9 9.4 75 171-252 162-242 (255)
190 2xex_A Elongation factor G; GT 99.3 9E-12 3.1E-16 139.3 13.4 131 55-216 9-142 (693)
191 3iby_A Ferrous iron transport 99.3 8.2E-13 2.8E-17 130.1 4.2 187 307-524 2-212 (256)
192 1oix_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 119.2 7.8 147 55-252 28-179 (191)
193 2rdo_7 EF-G, elongation factor 99.3 6.6E-11 2.2E-15 132.4 18.1 138 54-216 8-149 (704)
194 3p32_A Probable GTPase RV1496/ 99.3 7.9E-12 2.7E-16 129.0 9.8 97 137-252 172-271 (355)
195 2rcn_A Probable GTPase ENGC; Y 99.3 1.6E-11 5.4E-16 125.8 11.4 146 168-366 127-281 (358)
196 3r7w_B Gtpase2, GTP-binding pr 99.3 2.6E-11 9E-16 122.3 12.7 114 58-217 1-122 (331)
197 1dar_A EF-G, elongation factor 99.2 4.2E-11 1.4E-15 133.8 14.8 135 54-216 10-144 (691)
198 2qag_A Septin-2, protein NEDD5 99.2 1.4E-11 4.7E-16 127.4 9.9 161 56-251 37-220 (361)
199 1n0u_A EF-2, elongation factor 99.2 1.9E-11 6.5E-16 139.4 11.4 66 137-214 98-163 (842)
200 1udx_A The GTP-binding protein 99.2 7.8E-11 2.7E-15 123.4 14.8 152 55-252 156-312 (416)
201 3vqt_A RF-3, peptide chain rel 99.2 2.5E-11 8.5E-16 132.0 11.4 67 137-215 100-166 (548)
202 2p67_A LAO/AO transport system 99.2 8.3E-12 2.8E-16 128.1 7.2 97 137-252 149-248 (341)
203 3a1s_A Iron(II) transport prot 99.2 4.5E-11 1.6E-15 117.7 9.6 190 305-523 4-213 (258)
204 2dby_A GTP-binding protein; GD 99.2 1.3E-10 4.3E-15 120.0 12.2 109 57-183 2-111 (368)
205 1jal_A YCHF protein; nucleotid 99.1 1.7E-10 5.9E-15 118.3 11.6 105 57-183 3-108 (363)
206 3j25_A Tetracycline resistance 99.1 4E-11 1.4E-15 132.9 6.9 67 137-215 67-133 (638)
207 3b1v_A Ferrous iron uptake tra 99.1 3E-10 1E-14 112.6 11.0 188 306-523 3-209 (272)
208 4dhe_A Probable GTP-binding pr 99.1 1.9E-10 6.6E-15 109.8 9.1 109 305-415 28-156 (223)
209 2qag_B Septin-6, protein NEDD5 99.1 3.3E-10 1.1E-14 118.4 11.3 152 58-246 44-217 (427)
210 3pqc_A Probable GTP-binding pr 99.1 5.8E-10 2E-14 103.6 11.8 151 304-469 21-192 (195)
211 3k53_A Ferrous iron transport 99.1 2.5E-10 8.5E-15 113.2 9.8 190 306-522 3-213 (271)
212 2aka_B Dynamin-1; fusion prote 99.1 1E-10 3.5E-15 117.2 7.0 28 304-331 24-51 (299)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1.4E-11 5E-16 127.6 0.7 123 56-218 162-291 (369)
214 1svi_A GTP-binding protein YSX 99.1 3.1E-10 1E-14 105.9 9.7 150 305-468 22-192 (195)
215 2qag_C Septin-7; cell cycle, c 99.1 7.5E-10 2.6E-14 116.0 13.1 130 56-220 31-186 (418)
216 3zvr_A Dynamin-1; hydrolase, D 99.1 6.1E-11 2.1E-15 132.0 4.9 28 523-550 289-316 (772)
217 3h2y_A GTPase family protein; 99.0 3.7E-11 1.3E-15 124.4 2.2 136 56-231 160-303 (368)
218 2qnr_A Septin-2, protein NEDD5 99.0 9.3E-10 3.2E-14 110.8 12.3 72 172-252 127-201 (301)
219 2qm8_A GTPase/ATPase; G protei 99.0 2E-10 7E-15 117.4 7.6 97 137-252 148-248 (337)
220 3i8s_A Ferrous iron transport 99.0 2.1E-10 7.2E-15 114.0 6.5 142 305-468 2-166 (274)
221 1yrb_A ATP(GTP)binding protein 99.0 6.3E-10 2.2E-14 109.2 9.5 74 138-218 110-188 (262)
222 4fn5_A EF-G 1, elongation fact 99.0 8.8E-10 3E-14 123.7 11.7 66 138-215 86-151 (709)
223 1jwy_B Dynamin A GTPase domain 99.0 2.7E-10 9.4E-15 115.1 5.6 28 304-331 22-49 (315)
224 3sop_A Neuronal-specific septi 99.0 5.9E-09 2E-13 103.1 14.5 140 57-221 3-160 (270)
225 2x2e_A Dynamin-1; nitration, h 99.0 1.9E-10 6.6E-15 118.5 3.8 27 305-331 30-56 (353)
226 2wsm_A Hydrogenase expression/ 99.0 2.3E-10 7.9E-15 109.3 3.9 91 137-252 109-201 (221)
227 1xzp_A Probable tRNA modificat 98.9 1.2E-09 3.9E-14 116.9 9.1 140 306-469 243-403 (482)
228 3gee_A MNME, tRNA modification 98.9 3.7E-09 1.3E-13 112.8 12.6 142 305-470 232-397 (476)
229 2qpt_A EH domain-containing pr 98.9 9.9E-09 3.4E-13 111.6 15.8 245 303-551 62-401 (550)
230 3lxw_A GTPase IMAP family memb 98.8 4.7E-09 1.6E-13 102.5 8.6 62 304-367 19-84 (247)
231 3geh_A MNME, tRNA modification 98.8 3.8E-09 1.3E-13 112.3 8.1 140 305-469 223-382 (462)
232 2xtp_A GTPase IMAP family memb 98.8 5E-09 1.7E-13 102.8 8.0 61 305-367 21-85 (260)
233 2j37_W Signal recognition part 98.8 1.2E-08 4.1E-13 109.2 10.9 69 137-216 184-255 (504)
234 4bas_A ADP-ribosylation factor 98.8 7.6E-09 2.6E-13 96.5 7.9 63 302-365 13-75 (199)
235 3lxx_A GTPase IMAP family memb 98.8 9.1E-09 3.1E-13 99.7 8.6 61 305-368 28-93 (239)
236 2wji_A Ferrous iron transport 98.8 5.3E-09 1.8E-13 95.1 6.2 58 306-366 3-63 (165)
237 4a9a_A Ribosome-interacting GT 98.8 6E-09 2E-13 107.5 6.8 102 304-415 70-194 (376)
238 2cxx_A Probable GTP-binding pr 98.8 1.7E-08 5.9E-13 93.2 9.2 55 307-366 2-57 (190)
239 3tw8_B RAS-related protein RAB 98.8 1.1E-08 3.7E-13 93.6 7.2 144 305-471 8-171 (181)
240 2qu8_A Putative nucleolar GTP- 98.8 1.2E-08 4.1E-13 98.0 7.8 59 304-365 27-88 (228)
241 2h57_A ADP-ribosylation factor 98.7 6.4E-09 2.2E-13 96.6 5.4 63 302-365 17-79 (190)
242 2lkc_A Translation initiation 98.7 3.3E-08 1.1E-12 90.3 10.2 59 304-365 6-67 (178)
243 3q72_A GTP-binding protein RAD 98.7 2.1E-08 7.2E-13 90.5 8.7 58 306-365 2-61 (166)
244 2g6b_A RAS-related protein RAB 98.7 1.8E-08 6.1E-13 92.3 8.2 59 305-365 9-72 (180)
245 2nzj_A GTP-binding protein REM 98.7 4.1E-08 1.4E-12 89.3 10.5 59 305-365 3-64 (175)
246 4dsu_A GTPase KRAS, isoform 2B 98.7 2.7E-08 9.1E-13 91.7 9.4 144 305-473 3-168 (189)
247 2ohf_A Protein OLA1, GTP-bindi 98.7 1.4E-08 4.8E-13 105.1 7.4 108 54-183 20-128 (396)
248 2wjg_A FEOB, ferrous iron tran 98.7 1.9E-08 6.4E-13 93.0 7.2 147 305-469 6-167 (188)
249 2gj8_A MNME, tRNA modification 98.7 1.5E-08 5.3E-13 92.8 6.4 59 305-365 3-64 (172)
250 1kao_A RAP2A; GTP-binding prot 98.7 4.7E-08 1.6E-12 87.8 9.5 58 306-364 3-62 (167)
251 2dyk_A GTP-binding protein; GT 98.7 2.4E-08 8.3E-13 89.5 7.5 58 307-366 2-62 (161)
252 1wms_A RAB-9, RAB9, RAS-relate 98.7 3.3E-08 1.1E-12 90.2 8.4 57 305-364 6-67 (177)
253 3bc1_A RAS-related protein RAB 98.7 4.7E-08 1.6E-12 90.3 9.3 137 305-469 10-183 (195)
254 1tq4_A IIGP1, interferon-induc 98.7 2.3E-07 7.7E-12 96.9 15.2 116 55-214 68-188 (413)
255 3t5d_A Septin-7; GTP-binding p 98.7 1.9E-08 6.4E-13 99.7 6.6 61 306-366 8-78 (274)
256 3oes_A GTPase rhebl1; small GT 98.7 5.7E-08 1.9E-12 91.1 9.6 59 304-365 22-84 (201)
257 2erx_A GTP-binding protein DI- 98.7 3.3E-08 1.1E-12 89.4 7.1 58 306-364 3-62 (172)
258 3tkl_A RAS-related protein RAB 98.6 7.5E-08 2.6E-12 89.4 9.5 143 305-470 15-178 (196)
259 1ky3_A GTP-binding protein YPT 98.6 4.3E-08 1.5E-12 89.6 7.7 59 305-364 7-69 (182)
260 3t5g_A GTP-binding protein RHE 98.6 8.2E-08 2.8E-12 88.0 9.6 60 305-365 5-66 (181)
261 2j69_A Bacterial dynamin-like 98.6 7.7E-08 2.6E-12 107.5 10.8 37 305-343 68-104 (695)
262 1g16_A RAS-related protein SEC 98.6 8.5E-08 2.9E-12 86.6 9.2 57 306-365 3-64 (170)
263 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 8.5E-08 2.9E-12 99.5 10.2 109 54-183 18-127 (392)
264 4djt_A GTP-binding nuclear pro 98.6 1.1E-08 3.8E-13 97.2 2.9 147 305-473 10-177 (218)
265 1z0j_A RAB-22, RAS-related pro 98.6 9.4E-08 3.2E-12 86.3 8.9 59 305-364 5-66 (170)
266 3cph_A RAS-related protein SEC 98.6 1.2E-07 4.1E-12 89.4 9.9 141 305-469 19-180 (213)
267 1z2a_A RAS-related protein RAB 98.6 9.7E-08 3.3E-12 86.0 8.8 58 305-365 4-66 (168)
268 2h17_A ADP-ribosylation factor 98.6 4.3E-08 1.5E-12 90.3 6.5 61 302-365 17-77 (181)
269 3con_A GTPase NRAS; structural 98.6 1.2E-07 4.1E-12 87.7 9.4 57 305-365 20-81 (190)
270 2il1_A RAB12; G-protein, GDP, 98.6 4.8E-08 1.6E-12 91.0 6.6 60 304-364 24-86 (192)
271 2bov_A RAla, RAS-related prote 98.6 1.3E-07 4.6E-12 88.4 9.6 141 305-469 13-175 (206)
272 3clv_A RAB5 protein, putative; 98.6 1.3E-07 4.4E-12 88.0 9.3 28 304-331 5-32 (208)
273 1u8z_A RAS-related protein RAL 98.6 1.2E-07 4E-12 85.3 8.6 56 305-364 3-63 (168)
274 2fn4_A P23, RAS-related protei 98.6 1.6E-07 5.4E-12 85.7 9.7 142 305-470 8-171 (181)
275 2hf9_A Probable hydrogenase ni 98.6 1.2E-07 4.1E-12 90.5 9.2 26 56-81 38-63 (226)
276 1moz_A ARL1, ADP-ribosylation 98.6 4.5E-08 1.5E-12 89.9 5.9 58 305-365 17-74 (183)
277 1f5n_A Interferon-induced guan 98.6 1.3E-07 4.5E-12 102.8 10.4 108 56-199 38-147 (592)
278 1c1y_A RAS-related protein RAP 98.6 1.4E-07 4.9E-12 84.8 8.9 57 306-365 3-63 (167)
279 2a9k_A RAS-related protein RAL 98.6 1.6E-07 5.5E-12 86.2 9.4 141 305-469 17-179 (187)
280 2bcg_Y Protein YP2, GTP-bindin 98.6 1.8E-07 6.3E-12 87.8 10.0 142 305-469 7-169 (206)
281 1ek0_A Protein (GTP-binding pr 98.6 6E-08 2E-12 87.5 6.4 58 306-364 3-63 (170)
282 1puj_A YLQF, conserved hypothe 98.6 5.2E-08 1.8E-12 96.9 6.5 40 55-94 119-158 (282)
283 1upt_A ARL1, ADP-ribosylation 98.6 1.5E-07 5.1E-12 85.1 9.0 58 305-365 6-63 (171)
284 1vg8_A RAS-related protein RAB 98.6 1.2E-07 4E-12 89.0 8.4 58 305-365 7-69 (207)
285 1lnz_A SPO0B-associated GTP-bi 98.6 3E-08 1E-12 101.4 4.5 58 306-366 158-219 (342)
286 2gf9_A RAS-related protein RAB 98.6 1.4E-07 4.7E-12 87.4 8.7 61 304-365 20-83 (189)
287 1zj6_A ADP-ribosylation factor 98.5 6.8E-08 2.3E-12 89.3 6.2 58 305-365 15-72 (187)
288 4gzl_A RAS-related C3 botulinu 98.5 7E-08 2.4E-12 90.9 6.4 57 305-365 29-90 (204)
289 2efe_B Small GTP-binding prote 98.5 1.8E-07 6.1E-12 85.6 9.0 59 305-364 11-72 (181)
290 3ihw_A Centg3; RAS, centaurin, 98.5 1.1E-07 3.7E-12 88.1 7.5 59 303-364 17-78 (184)
291 2ged_A SR-beta, signal recogni 98.5 8.5E-08 2.9E-12 89.0 6.7 59 304-366 46-104 (193)
292 1z0f_A RAB14, member RAS oncog 98.5 2.6E-07 8.8E-12 84.1 9.9 59 305-364 14-75 (179)
293 2fg5_A RAB-22B, RAS-related pr 98.5 1.2E-07 4.2E-12 88.1 7.7 59 305-364 22-83 (192)
294 3lvq_E ARF-GAP with SH3 domain 98.5 4.1E-08 1.4E-12 105.7 5.1 137 304-473 320-486 (497)
295 1r2q_A RAS-related protein RAB 98.5 1.8E-07 6.1E-12 84.3 8.6 59 305-364 5-66 (170)
296 3reg_A RHO-like small GTPase; 98.5 8.2E-08 2.8E-12 89.3 6.5 59 305-364 22-82 (194)
297 3q85_A GTP-binding protein REM 98.5 1.6E-07 5.5E-12 84.9 8.3 57 307-365 3-63 (169)
298 3kkq_A RAS-related protein M-R 98.5 2.6E-07 9E-12 84.8 9.8 142 305-469 17-180 (183)
299 2gf0_A GTP-binding protein DI- 98.5 1.3E-07 4.4E-12 88.0 7.8 60 305-365 7-68 (199)
300 2a5j_A RAS-related protein RAB 98.5 2.9E-07 1E-11 85.4 10.2 61 304-365 19-82 (191)
301 2y8e_A RAB-protein 6, GH09086P 98.5 2.3E-07 7.7E-12 84.5 9.2 56 306-364 14-74 (179)
302 3dz8_A RAS-related protein RAB 98.5 1.5E-07 5.2E-12 87.3 8.1 145 304-469 21-184 (191)
303 2bme_A RAB4A, RAS-related prot 98.5 1.6E-07 5.6E-12 86.3 8.2 57 305-364 9-70 (186)
304 2oil_A CATX-8, RAS-related pro 98.5 2.2E-07 7.4E-12 86.3 8.9 61 304-365 23-86 (193)
305 2ce2_X GTPase HRAS; signaling 98.5 2.5E-07 8.6E-12 82.8 9.1 141 306-468 3-162 (166)
306 2x77_A ADP-ribosylation factor 98.5 1.2E-07 4.2E-12 87.7 7.2 58 305-365 21-78 (189)
307 2o52_A RAS-related protein RAB 98.5 1.6E-07 5.5E-12 88.0 8.1 58 304-364 23-85 (200)
308 2iwr_A Centaurin gamma 1; ANK 98.5 2.8E-07 9.4E-12 84.2 9.4 59 305-365 6-66 (178)
309 2q3h_A RAS homolog gene family 98.5 1.8E-07 6.2E-12 87.4 8.2 58 304-365 18-80 (201)
310 3szr_A Interferon-induced GTP- 98.5 3.7E-07 1.3E-11 100.5 11.6 80 137-217 147-230 (608)
311 2gco_A H9, RHO-related GTP-bin 98.5 2.7E-07 9.2E-12 86.5 9.1 57 305-364 24-84 (201)
312 1zd9_A ADP-ribosylation factor 98.5 1E-07 3.5E-12 88.3 6.1 59 304-364 20-78 (188)
313 1z06_A RAS-related protein RAB 98.5 2.1E-07 7.1E-12 86.2 8.1 60 304-364 18-80 (189)
314 1fzq_A ADP-ribosylation factor 98.5 9E-08 3.1E-12 88.3 5.6 57 305-364 15-71 (181)
315 1ksh_A ARF-like protein 2; sma 98.5 1.3E-07 4.4E-12 87.2 6.4 57 305-364 17-73 (186)
316 1r8s_A ADP-ribosylation factor 98.5 1.6E-07 5.5E-12 84.4 6.6 54 307-364 1-55 (164)
317 2p5s_A RAS and EF-hand domain 98.5 3.3E-07 1.1E-11 85.7 9.0 60 304-364 26-88 (199)
318 1m2o_B GTP-binding protein SAR 98.5 9.2E-08 3.1E-12 89.0 5.0 58 305-365 22-79 (190)
319 2ew1_A RAS-related protein RAB 98.5 3.4E-07 1.2E-11 86.1 9.0 56 305-363 25-85 (201)
320 2www_A Methylmalonic aciduria 98.5 7.1E-08 2.4E-12 99.0 4.6 24 305-328 73-96 (349)
321 1h65_A Chloroplast outer envel 98.5 2.4E-07 8.3E-12 91.4 8.4 61 305-367 38-101 (270)
322 1f6b_A SAR1; gtpases, N-termin 98.5 1.8E-07 6.3E-12 87.6 7.0 58 305-365 24-81 (198)
323 2hxs_A RAB-26, RAS-related pro 98.5 2.3E-07 8E-12 84.5 7.5 60 305-365 5-68 (178)
324 2atv_A RERG, RAS-like estrogen 98.5 5.9E-07 2E-11 83.6 10.3 60 305-365 27-88 (196)
325 2qtf_A Protein HFLX, GTP-bindi 98.5 3.1E-07 1.1E-11 94.7 9.1 57 306-365 179-238 (364)
326 1z08_A RAS-related protein RAB 98.5 2.1E-07 7.1E-12 84.1 6.7 58 305-365 5-67 (170)
327 1wb1_A Translation elongation 98.5 1.4E-07 5E-12 100.9 6.5 139 305-469 18-187 (482)
328 1mh1_A RAC1; GTP-binding, GTPa 98.5 2.5E-07 8.5E-12 84.9 7.2 57 305-365 4-65 (186)
329 2f7s_A C25KG, RAS-related prot 98.4 1.8E-07 6.1E-12 88.7 6.3 28 304-331 23-50 (217)
330 2hup_A RAS-related protein RAB 98.4 5.9E-07 2E-11 84.3 9.7 58 304-364 27-89 (201)
331 1zbd_A Rabphilin-3A; G protein 98.4 4.7E-07 1.6E-11 84.7 8.8 143 306-469 8-169 (203)
332 3cpj_B GTP-binding protein YPT 98.4 4.2E-07 1.5E-11 86.7 8.4 60 305-365 12-74 (223)
333 3dm5_A SRP54, signal recogniti 98.4 7.8E-07 2.7E-11 93.3 11.0 94 137-252 183-278 (443)
334 3p32_A Probable GTPase RV1496/ 98.4 6.3E-07 2.2E-11 92.1 10.2 25 305-329 78-102 (355)
335 2fv8_A H6, RHO-related GTP-bin 98.4 3.3E-07 1.1E-11 86.3 7.4 58 305-365 24-85 (207)
336 1x3s_A RAS-related protein RAB 98.4 5E-07 1.7E-11 83.6 8.5 60 305-365 14-76 (195)
337 2e87_A Hypothetical protein PH 98.4 7.8E-07 2.7E-11 91.5 10.6 60 304-366 165-227 (357)
338 1m7b_A RND3/RHOE small GTP-bin 98.4 5.5E-07 1.9E-11 82.9 8.4 59 305-364 6-66 (184)
339 2j1l_A RHO-related GTP-binding 98.4 3E-07 1E-11 87.2 6.7 58 305-365 33-94 (214)
340 4dkx_A RAS-related protein RAB 98.4 8.6E-07 2.9E-11 84.6 9.7 142 306-468 13-173 (216)
341 2b6h_A ADP-ribosylation factor 98.4 2.6E-07 8.8E-12 86.1 5.9 57 305-365 28-85 (192)
342 3def_A T7I23.11 protein; chlor 98.4 5.4E-07 1.9E-11 88.5 7.9 61 305-367 35-98 (262)
343 2j0v_A RAC-like GTP-binding pr 98.4 4.6E-07 1.6E-11 85.5 7.1 60 305-365 8-69 (212)
344 2atx_A Small GTP binding prote 98.4 2.4E-06 8.3E-11 79.1 11.8 57 305-365 17-78 (194)
345 3qq5_A Small GTP-binding prote 98.4 1.7E-07 5.7E-12 98.4 4.1 141 305-469 33-194 (423)
346 3o47_A ADP-ribosylation factor 98.4 2.1E-07 7.3E-12 94.7 4.7 57 304-364 163-220 (329)
347 2fu5_C RAS-related protein RAB 98.4 3.6E-07 1.2E-11 83.9 5.7 58 305-365 7-69 (183)
348 3cbq_A GTP-binding protein REM 98.3 5.6E-07 1.9E-11 84.1 7.1 57 305-364 22-83 (195)
349 3bwd_D RAC-like GTP-binding pr 98.3 5.7E-07 1.9E-11 82.2 6.8 57 305-365 7-68 (182)
350 3cnl_A YLQF, putative uncharac 98.3 3.1E-07 1E-11 90.4 4.9 36 57-92 100-135 (262)
351 2fh5_B SR-beta, signal recogni 98.3 1.4E-06 4.9E-11 82.2 9.4 56 305-364 6-65 (214)
352 3l0i_B RAS-related protein RAB 98.3 6.4E-08 2.2E-12 90.6 -0.5 58 305-365 32-94 (199)
353 2v3c_C SRP54, signal recogniti 98.3 1.2E-06 4.2E-11 92.1 9.3 69 137-216 181-253 (432)
354 3gj0_A GTP-binding nuclear pro 98.3 9.9E-08 3.4E-12 90.9 0.7 61 304-365 13-76 (221)
355 1gwn_A RHO-related GTP-binding 98.3 5.1E-07 1.7E-11 85.2 5.6 57 305-364 27-87 (205)
356 2cjw_A GTP-binding protein GEM 98.3 1.7E-06 5.7E-11 80.6 9.0 58 306-365 6-68 (192)
357 2g3y_A GTP-binding protein GEM 98.3 1.4E-06 4.7E-11 82.8 8.5 58 305-364 36-98 (211)
358 1nrj_B SR-beta, signal recogni 98.3 1.5E-06 5.3E-11 82.2 8.6 58 304-365 10-67 (218)
359 1wxq_A GTP-binding protein; st 98.3 2.7E-07 9.4E-12 96.2 3.6 35 307-344 1-35 (397)
360 3izy_P Translation initiation 98.3 1.1E-07 3.7E-12 102.5 0.5 143 305-470 3-167 (537)
361 1pui_A ENGB, probable GTP-bind 98.3 4.3E-07 1.5E-11 85.4 4.6 59 305-365 25-84 (210)
362 3q3j_B RHO-related GTP-binding 98.3 1.4E-06 4.9E-11 82.6 8.2 59 305-364 26-86 (214)
363 3llu_A RAS-related GTP-binding 98.3 1.5E-06 5.1E-11 81.0 8.2 63 302-365 16-81 (196)
364 3t1o_A Gliding protein MGLA; G 98.3 7.7E-07 2.6E-11 82.3 5.8 26 305-330 13-38 (198)
365 3tr5_A RF-3, peptide chain rel 98.2 8E-07 2.7E-11 96.0 6.1 98 305-416 12-147 (528)
366 3r7w_A Gtpase1, GTP-binding pr 98.2 1.5E-06 5.1E-11 87.5 7.3 57 306-364 3-63 (307)
367 3t34_A Dynamin-related protein 98.2 1.8E-06 6.3E-11 88.8 8.0 27 305-331 33-59 (360)
368 3j2k_7 ERF3, eukaryotic polype 98.2 1.7E-06 5.7E-11 91.6 7.8 61 304-364 15-106 (439)
369 3th5_A RAS-related C3 botulinu 97.5 1.6E-07 5.5E-12 88.1 0.0 57 305-365 29-90 (204)
370 3c5c_A RAS-like protein 12; GD 98.2 4.3E-06 1.5E-10 77.3 9.2 57 305-365 20-81 (187)
371 3p26_A Elongation factor 1 alp 98.2 2.3E-06 7.8E-11 91.7 7.8 60 305-364 32-122 (483)
372 3izq_1 HBS1P, elongation facto 98.1 2.1E-06 7.2E-11 94.4 7.1 59 304-364 165-256 (611)
373 2yc2_C IFT27, small RAB-relate 98.1 7.6E-07 2.6E-11 83.2 3.0 56 305-364 19-84 (208)
374 2p67_A LAO/AO transport system 98.1 1.6E-06 5.5E-11 88.6 5.7 25 305-329 55-79 (341)
375 2wkq_A NPH1-1, RAS-related C3 98.1 2.4E-06 8.2E-11 86.2 6.7 57 305-365 154-215 (332)
376 3mca_A HBS1, elongation factor 98.1 5.4E-07 1.9E-11 98.8 1.3 61 305-365 176-267 (592)
377 2zej_A Dardarin, leucine-rich 98.1 2.9E-06 9.9E-11 78.2 5.7 24 306-329 2-25 (184)
378 3dpu_A RAB family protein; roc 98.0 7.3E-06 2.5E-10 88.9 8.8 145 304-470 39-207 (535)
379 3kl4_A SRP54, signal recogniti 98.0 8.5E-06 2.9E-10 85.4 8.8 94 137-252 180-277 (433)
380 1f5n_A Interferon-induced guan 98.0 2.2E-06 7.7E-11 93.1 3.7 73 305-378 37-118 (592)
381 2wsm_A Hydrogenase expression/ 98.0 3.7E-06 1.3E-10 79.7 4.8 25 305-329 29-53 (221)
382 3sjy_A Translation initiation 98.0 3.4E-06 1.2E-10 88.2 4.8 26 305-330 7-32 (403)
383 3q5d_A Atlastin-1; G protein, 98.0 2.4E-05 8.3E-10 82.2 11.0 23 57-79 68-90 (447)
384 1udx_A The GTP-binding protein 98.0 1E-05 3.5E-10 84.6 7.7 143 306-470 157-324 (416)
385 2qm8_A GTPase/ATPase; G protei 98.0 1.2E-05 4E-10 82.0 8.0 24 305-328 54-77 (337)
386 1kk1_A EIF2gamma; initiation o 97.9 9.7E-06 3.3E-10 84.9 7.0 38 306-343 10-47 (410)
387 1g7s_A Translation initiation 97.9 5.7E-06 1.9E-10 90.5 4.8 26 305-330 4-29 (594)
388 1jal_A YCHF protein; nucleotid 97.9 4.5E-06 1.5E-10 85.5 3.7 56 307-365 3-78 (363)
389 1s0u_A EIF-2-gamma, translatio 97.9 3.2E-05 1.1E-09 80.9 9.9 39 305-343 7-45 (408)
390 3cb4_D GTP-binding protein LEP 97.9 9.3E-06 3.2E-10 88.8 5.9 143 306-468 4-179 (599)
391 2f9l_A RAB11B, member RAS onco 97.9 5.1E-05 1.7E-09 70.6 10.2 59 306-365 5-66 (199)
392 2ywe_A GTP-binding protein LEP 97.9 1.5E-05 5E-10 87.1 7.3 143 306-468 6-181 (600)
393 1j8m_F SRP54, signal recogniti 97.9 0.00013 4.4E-09 72.8 13.6 69 137-216 181-254 (297)
394 2qag_A Septin-2, protein NEDD5 97.9 7.1E-06 2.4E-10 84.4 4.4 61 306-366 37-108 (361)
395 2hf9_A Probable hydrogenase ni 97.9 2.5E-05 8.4E-10 74.2 7.5 25 305-329 37-61 (226)
396 2c78_A Elongation factor TU-A; 97.8 2.8E-05 9.6E-10 81.2 8.4 61 305-365 10-87 (405)
397 1cip_A Protein (guanine nucleo 97.8 7.7E-06 2.6E-10 83.7 3.9 104 138-252 194-331 (353)
398 2elf_A Protein translation elo 97.8 1.1E-05 3.8E-10 83.2 5.0 128 308-470 23-179 (370)
399 1f60_A Elongation factor EEF1A 97.8 4.4E-06 1.5E-10 88.8 1.6 24 306-329 7-30 (458)
400 1zo1_I IF2, translation initia 97.8 8.1E-06 2.8E-10 87.2 3.6 58 305-365 3-63 (501)
401 1zun_B Sulfate adenylate trans 97.8 1.2E-05 4.2E-10 84.7 4.7 25 306-330 24-48 (434)
402 1dar_A EF-G, elongation factor 97.8 4.1E-05 1.4E-09 85.5 8.5 105 305-416 11-142 (691)
403 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 3.2E-05 1.1E-09 80.0 7.1 61 305-367 19-99 (392)
404 2h5e_A Peptide chain release f 97.8 5E-05 1.7E-09 82.0 8.8 98 305-416 12-147 (529)
405 1nij_A Hypothetical protein YJ 97.8 8.8E-05 3E-09 74.8 10.2 145 56-216 4-165 (318)
406 1oix_A RAS-related protein RAB 97.7 8.3E-05 2.8E-09 68.8 9.0 57 306-365 29-90 (191)
407 3c5h_A Glucocorticoid receptor 97.7 5.9E-05 2E-09 73.5 8.2 26 304-329 17-51 (255)
408 2xex_A Elongation factor G; GT 97.7 4.2E-05 1.4E-09 85.4 7.4 105 305-416 9-140 (693)
409 1zcb_A G alpha I/13; GTP-bindi 97.7 1.7E-05 6E-10 81.4 3.9 66 138-214 202-281 (362)
410 1d2e_A Elongation factor TU (E 97.7 2.1E-05 7.3E-10 81.9 4.5 97 306-416 3-132 (397)
411 3avx_A Elongation factor TS, e 97.6 3.5E-05 1.2E-09 88.9 5.7 98 305-416 295-425 (1289)
412 3e70_C DPA, signal recognition 97.6 0.00026 8.9E-09 71.6 10.7 69 137-215 212-282 (328)
413 2dby_A GTP-binding protein; GD 97.6 4.1E-05 1.4E-09 78.7 4.3 58 307-367 2-83 (368)
414 2ohf_A Protein OLA1, GTP-bindi 97.5 3.4E-05 1.2E-09 79.8 3.6 60 305-367 21-100 (396)
415 1jny_A EF-1-alpha, elongation 97.5 6.1E-05 2.1E-09 79.4 5.4 61 305-365 5-96 (435)
416 1n0u_A EF-2, elongation factor 97.5 4.5E-05 1.5E-09 87.0 4.5 24 306-329 19-42 (842)
417 2qag_B Septin-6, protein NEDD5 97.5 1.6E-05 5.4E-10 83.0 0.3 59 307-365 43-107 (427)
418 2yhs_A FTSY, cell division pro 97.5 0.00024 8.2E-09 75.2 8.8 26 55-80 292-317 (503)
419 2rdo_7 EF-G, elongation factor 97.4 0.00025 8.7E-09 79.1 8.6 105 305-416 9-147 (704)
420 2xtz_A Guanine nucleotide-bind 97.4 5.7E-05 2E-09 77.3 2.6 66 138-214 184-263 (354)
421 2qag_C Septin-7; cell cycle, c 97.3 9.4E-05 3.2E-09 77.3 3.8 26 306-331 31-56 (418)
422 3q5d_A Atlastin-1; G protein, 97.3 9.7E-05 3.3E-09 77.6 3.9 59 307-367 68-154 (447)
423 2dy1_A Elongation factor G; tr 97.3 0.00035 1.2E-08 77.6 7.9 105 305-416 8-139 (665)
424 1rj9_A FTSY, signal recognitio 97.3 0.00054 1.8E-08 68.5 8.6 25 56-80 102-126 (304)
425 1yrb_A ATP(GTP)binding protein 97.3 3.2E-05 1.1E-09 75.2 -0.4 24 304-327 12-35 (262)
426 2xxa_A Signal recognition part 97.3 0.00018 6E-09 75.6 5.1 68 137-215 184-254 (433)
427 1r5b_A Eukaryotic peptide chai 97.3 0.00013 4.4E-09 77.7 4.0 25 305-329 42-66 (467)
428 4fid_A G protein alpha subunit 97.2 0.00012 4.2E-09 74.2 2.9 67 138-215 162-242 (340)
429 1zu4_A FTSY; GTPase, signal re 97.2 0.00074 2.5E-08 68.0 8.1 24 56-79 105-128 (320)
430 3vqt_A RF-3, peptide chain rel 97.1 0.00079 2.7E-08 72.9 8.5 113 306-445 31-181 (548)
431 1t9h_A YLOQ, probable GTPase E 97.1 0.00017 5.8E-09 72.2 2.9 27 55-81 172-198 (307)
432 3ohm_A Guanine nucleotide-bind 97.1 0.0002 6.9E-09 72.2 3.4 67 138-215 168-248 (327)
433 2px0_A Flagellar biosynthesis 97.1 0.0013 4.5E-08 65.5 9.1 25 56-80 105-129 (296)
434 3l82_B F-box only protein 4; T 97.1 0.0019 6.6E-08 60.4 9.0 103 138-252 97-210 (227)
435 1vma_A Cell division protein F 97.0 0.0013 4.6E-08 65.7 8.5 24 56-79 104-127 (306)
436 2rcn_A Probable GTPase ENGC; Y 96.9 0.0006 2E-08 69.6 4.2 26 56-81 215-240 (358)
437 3sop_A Neuronal-specific septi 96.9 0.0011 3.7E-08 65.1 6.0 24 307-330 3-26 (270)
438 2ffh_A Protein (FFH); SRP54, s 96.8 0.004 1.4E-07 65.0 10.3 69 137-215 181-251 (425)
439 4ido_A Atlastin-1; GTPase, GTP 96.8 0.01 3.5E-07 62.1 13.2 21 57-77 68-88 (457)
440 2qnr_A Septin-2, protein NEDD5 96.8 0.0015 5.2E-08 65.1 6.2 24 306-329 18-41 (301)
441 1azs_C GS-alpha; complex (lyas 96.7 0.00051 1.7E-08 71.2 2.2 67 138-215 218-298 (402)
442 2yv5_A YJEQ protein; hydrolase 96.7 0.003 1E-07 63.0 7.5 25 55-80 164-188 (302)
443 4dzz_A Plasmid partitioning pr 96.5 0.011 3.9E-07 54.5 9.9 63 137-214 76-143 (206)
444 3j25_A Tetracycline resistance 96.4 0.0015 5.1E-08 72.2 3.9 95 308-416 4-132 (638)
445 1u0l_A Probable GTPase ENGC; p 96.4 0.0029 9.8E-08 63.1 5.6 27 55-81 168-194 (301)
446 1ls1_A Signal recognition part 96.4 0.0049 1.7E-07 61.2 7.0 24 56-79 98-121 (295)
447 1znw_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 58.8 3.7 29 52-80 16-44 (207)
448 3r7w_B Gtpase2, GTP-binding pr 96.0 0.0094 3.2E-07 59.9 6.8 56 308-365 1-58 (331)
449 1tq4_A IIGP1, interferon-induc 95.9 0.0092 3.1E-07 62.0 6.5 62 305-366 68-133 (413)
450 1ye8_A Protein THEP1, hypothet 95.9 0.0041 1.4E-07 56.9 3.3 23 58-80 2-24 (178)
451 1lvg_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 58.1 3.0 24 57-80 5-28 (198)
452 1kgd_A CASK, peripheral plasma 95.9 0.0049 1.7E-07 56.2 3.7 24 57-80 6-29 (180)
453 3ney_A 55 kDa erythrocyte memb 95.7 0.0061 2.1E-07 56.7 3.9 27 54-80 17-43 (197)
454 3cwq_A Para family chromosome 95.6 0.075 2.6E-06 49.6 11.0 65 137-215 68-134 (209)
455 3tr0_A Guanylate kinase, GMP k 95.6 0.0074 2.5E-07 55.8 3.8 24 56-79 7-30 (205)
456 1z6g_A Guanylate kinase; struc 95.5 0.0072 2.5E-07 57.1 3.3 26 55-80 22-47 (218)
457 1s96_A Guanylate kinase, GMP k 95.4 0.0088 3E-07 56.6 3.7 26 55-80 15-40 (219)
458 3a00_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 55.3 3.1 23 58-80 3-25 (186)
459 4fn5_A EF-G 1, elongation fact 95.4 0.02 6.9E-07 63.9 7.1 96 307-416 14-150 (709)
460 1zp6_A Hypothetical protein AT 95.4 0.0096 3.3E-07 54.4 3.8 24 56-79 9-32 (191)
461 3c8u_A Fructokinase; YP_612366 95.3 0.0087 3E-07 55.9 3.3 26 55-80 21-46 (208)
462 2pcj_A ABC transporter, lipopr 95.3 0.0082 2.8E-07 57.0 3.1 27 54-80 28-54 (224)
463 1htw_A HI0065; nucleotide-bind 95.3 0.011 3.8E-07 52.9 3.7 25 56-80 33-57 (158)
464 3tif_A Uncharacterized ABC tra 95.2 0.0091 3.1E-07 57.2 3.2 27 54-80 29-55 (235)
465 2onk_A Molybdate/tungstate ABC 95.1 0.01 3.5E-07 57.0 3.3 26 54-80 23-48 (240)
466 1np6_A Molybdopterin-guanine d 95.1 0.013 4.4E-07 53.4 3.7 24 56-79 6-29 (174)
467 3end_A Light-independent proto 95.1 0.029 9.9E-07 55.6 6.6 64 137-213 157-225 (307)
468 2j41_A Guanylate kinase; GMP, 95.1 0.013 4.4E-07 54.2 3.8 26 55-80 5-30 (207)
469 3tau_A Guanylate kinase, GMP k 95.1 0.013 4.6E-07 54.7 3.9 25 56-80 8-32 (208)
470 3asz_A Uridine kinase; cytidin 95.0 0.013 4.4E-07 54.6 3.6 24 56-79 6-29 (211)
471 3gfo_A Cobalt import ATP-bindi 95.0 0.011 3.6E-07 58.1 3.0 27 54-80 32-58 (275)
472 1g6h_A High-affinity branched- 95.0 0.011 3.7E-07 57.5 3.0 27 54-80 31-57 (257)
473 1mv5_A LMRA, multidrug resista 95.0 0.011 3.8E-07 56.9 3.0 27 54-80 26-52 (243)
474 1sgw_A Putative ABC transporte 95.0 0.0098 3.3E-07 56.1 2.5 27 54-80 33-59 (214)
475 2pze_A Cystic fibrosis transme 95.0 0.011 3.8E-07 56.3 3.0 27 54-80 32-58 (229)
476 2ff7_A Alpha-hemolysin translo 95.0 0.011 3.8E-07 57.0 3.0 27 54-80 33-59 (247)
477 3b85_A Phosphate starvation-in 94.9 0.01 3.5E-07 55.7 2.6 23 57-79 23-45 (208)
478 2eyu_A Twitching motility prot 94.9 0.012 4.3E-07 57.2 3.3 28 53-80 22-49 (261)
479 2d2e_A SUFC protein; ABC-ATPas 94.9 0.013 4.3E-07 56.7 3.3 26 54-79 27-52 (250)
480 4g1u_C Hemin import ATP-bindin 94.9 0.011 3.7E-07 57.8 2.8 27 54-80 35-61 (266)
481 3ney_A 55 kDa erythrocyte memb 94.9 0.0069 2.4E-07 56.3 1.4 58 305-363 18-76 (197)
482 1ihu_A Arsenical pump-driving 94.9 0.087 3E-06 57.4 10.4 42 172-214 198-240 (589)
483 2cbz_A Multidrug resistance-as 94.9 0.013 4.3E-07 56.2 3.2 27 54-80 29-55 (237)
484 4gp7_A Metallophosphoesterase; 94.9 0.011 3.8E-07 53.4 2.7 24 55-78 8-31 (171)
485 2v9p_A Replication protein E1; 94.9 0.016 5.6E-07 57.6 4.0 27 54-80 124-150 (305)
486 1ji0_A ABC transporter; ATP bi 94.9 0.012 4.1E-07 56.5 3.0 27 54-80 30-56 (240)
487 2zu0_C Probable ATP-dependent 94.9 0.013 4.6E-07 57.2 3.3 26 54-79 44-69 (267)
488 2qi9_C Vitamin B12 import ATP- 94.8 0.012 4.2E-07 56.8 3.0 27 54-80 24-50 (249)
489 1b0u_A Histidine permease; ABC 94.8 0.013 4.6E-07 57.0 3.2 27 54-80 30-56 (262)
490 2ghi_A Transport protein; mult 94.8 0.013 4.5E-07 57.0 3.0 27 54-80 44-70 (260)
491 2olj_A Amino acid ABC transpor 94.7 0.015 5E-07 56.7 3.2 27 54-80 48-74 (263)
492 2f1r_A Molybdopterin-guanine d 94.7 0.01 3.5E-07 53.9 1.9 24 57-80 3-26 (171)
493 2nq2_C Hypothetical ABC transp 94.7 0.014 4.9E-07 56.5 3.0 27 54-80 29-55 (253)
494 3kjh_A CO dehydrogenase/acetyl 94.7 0.0037 1.3E-07 59.7 -1.2 62 137-212 132-194 (254)
495 2ihy_A ABC transporter, ATP-bi 94.7 0.014 4.9E-07 57.3 3.0 27 54-80 45-71 (279)
496 1vpl_A ABC transporter, ATP-bi 94.7 0.016 5.4E-07 56.3 3.2 27 54-80 39-65 (256)
497 2yz2_A Putative ABC transporte 94.6 0.015 5.1E-07 56.8 3.0 27 54-80 31-57 (266)
498 2i3b_A HCR-ntpase, human cance 94.6 0.016 5.4E-07 53.5 2.8 23 58-80 3-25 (189)
499 2bdt_A BH3686; alpha-beta prot 94.6 0.018 6.3E-07 52.5 3.3 21 58-78 4-24 (189)
500 2qor_A Guanylate kinase; phosp 94.6 0.019 6.6E-07 53.3 3.5 26 55-80 11-36 (204)
No 1
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=100.00 E-value=9.3e-38 Score=340.38 Aligned_cols=251 Identities=68% Similarity=1.155 Sum_probs=184.2
Q ss_pred CccccCCCC--CCChhHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHh
Q psy11743 1 MFSWMSKNE--DSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
|+||+.+.. .+..+.++++++.|+++|++++.++++.+.|..|+++.+.+......++|+|+|.+|+|||||+|+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp ------------------CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 789999652 355699999999999999999999999999999999988888888899999999999999999999999
Q ss_pred cCCCCCCCCCCCccceEEEEEeCCCccccCC--------CCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCC
Q psy11743 79 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPF--------SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSG 150 (551)
Q Consensus 79 ~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g--------~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~ 150 (551)
.++.+..+++.|+|+++..+.+++.....+| .++..+..+|..+.++|.|++++++++.+++||||||+.++
T Consensus 88 ~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~ 167 (550)
T 2qpt_A 88 QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSG 167 (550)
T ss_dssp SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-
T ss_pred CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCc
Confidence 9976556788888888888888765333333 35566778899999999999999998889999999999875
Q ss_pred cccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHc
Q psy11743 151 EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l 230 (551)
..+.+.+.+.+...+..++.++|++|+|+|+.+.+....+..+++.+...+.|+++|+||+|+++.+++.+.+....|++
T Consensus 168 ~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s~ 247 (550)
T 2qpt_A 168 AKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247 (550)
T ss_dssp ------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcch
Confidence 55555666667788889999999999999998766788888888888888899999999999999888877777777776
Q ss_pred ccccCCCCceEEEecccCCCC
Q psy11743 231 GKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 231 ~~l~~~~~~~~v~iSa~~g~~ 251 (551)
..+...+....++.+..+..+
T Consensus 248 ~~i~~vs~l~~~~~~~~~~~~ 268 (550)
T 2qpt_A 248 GKVVGTPEVLRVYIGSFWSQP 268 (550)
T ss_dssp HHHHCCSSCCCEEESCCSSSC
T ss_pred hheeechHhhhhccccCCCCc
Confidence 665454444445566655443
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.1e-37 Score=326.01 Aligned_cols=328 Identities=19% Similarity=0.217 Sum_probs=210.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|+|...+.+...|+.|+++..... .+.+
T Consensus 2 ~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~----------------------~~~~--------- 50 (436)
T 2hjg_A 2 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA----------------------EWLN--------- 50 (436)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC----------------------TTCS---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE----------------------EECC---------
Confidence 358999999999999999999999988777888888888764321 1112
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+...... + ...+..++..+++.||++|+|+|++. +.+..+..+.+.+++.++|+++|+||+|+.
T Consensus 51 --~~~~l~DT~G~~~~~~~-~--~~~~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 51 --YDFNLIDTGGIDIGDEP-F--LAQIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp --SCCEEEC---------C-H--HHHHHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred --ceEEEEECCCCCCcchh-H--HHHHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 46999999999743211 1 12356677888999999999999996 788888888888888899999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
+.... ...+++++. .+.+.+||.+|.|+ ++|++.+...-..
T Consensus 125 ~~~~~----~~~~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~l~~---------------- 165 (436)
T 2hjg_A 125 EMRAN----IYDFYSLGF------GEPYPISGTHGLGL-------------GDLLDAVAEHFKN---------------- 165 (436)
T ss_dssp ----C----CCSSGGGSS------CCCEECBTTTTBTH-------------HHHHHHHHHTGGG----------------
T ss_pred cchhh----HHHHHHcCC------CCeEEEeCcCCCCh-------------HHHHHHHHHhcCc----------------
Confidence 54210 112233332 24578999998887 5566555221000
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
.+ .......+++++++|.|||||||++|+|++.. ...++..++||+. ..+.+++..+.++||||+.+......
T Consensus 166 -~~-~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 241 (436)
T 2hjg_A 166 -IP-ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 241 (436)
T ss_dssp -CC-SSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC
T ss_pred -cc-cccccccCcEEEEEcCCCCCHHHHHHHHhCCC--ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc
Confidence 00 01122356899999999999999999999998 4678999999973 34666788899999999998877777
Q ss_pred hhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
.+++|+. .++..++..+| +..+.+.++ ..++.|+|+||||+.- +....+++
T Consensus 242 ~~e~~~~---~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~----------~~~~~~~~ 308 (436)
T 2hjg_A 242 TTEKYSV---LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD----------KDESTMKE 308 (436)
T ss_dssp CCSHHHH---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC----------CCTTHHHH
T ss_pred hHHHHHH---HHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCC----------cchHHHHH
Confidence 7888875 33334444444 334555444 4567799999999832 11111223
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
..+.+.+.+. .++|++++ ++|.+ +++++.+.+.+.++.++
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcC
Confidence 4445555553 46788777 89999 99999999988776654
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.1e-35 Score=317.23 Aligned_cols=332 Identities=19% Similarity=0.254 Sum_probs=206.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+|+|++|||||||+|+|++...+.+...|+.|+++..... .+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~----------------------~~~~----------- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV----------------------EWYG----------- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE----------------------EETT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEE----------------------EECC-----------
Confidence 7899999999999999999999987777888888888764321 1111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.......+. ..+..++..+++.||++|+|+|++. +.+..+..+..++++.++|+++|+||+|+...
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~--~~~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIIS--QKMKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVANKAENLRE 125 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCC--HHHHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred eEEEEEECCCccccccchHH--HHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 45899999999853222221 2356778888999999999999996 78888878888888778999999999998532
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
. .......++.++. .+.+.+||.+|.|+ ++|++.+... +... ..
T Consensus 126 ~--~~~~~~~~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~------------l~~~---~~ 169 (439)
T 1mky_A 126 F--EREVKPELYSLGF------GEPIPVSAEHNINL-------------DTMLETIIKK------------LEEK---GL 169 (439)
T ss_dssp H--HHHTHHHHGGGSS------CSCEECBTTTTBSH-------------HHHHHHHHHH------------HHHT---TC
T ss_pred c--HHHHHHHHHhcCC------CCEEEEeccCCCCH-------------HHHHHHHHHh------------cccc---cc
Confidence 1 1111133444432 13578999999887 5565555211 1100 00
Q ss_pred C-CCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC-c
Q psy11743 297 P-YEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF-R 371 (551)
Q Consensus 297 ~-~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~-~ 371 (551)
. ........+++++++|+|||||||++|.|++.. ...+++.|+||+ ...+.+++..+.++||||+....... .
T Consensus 170 ~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~--~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 170 DLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp CSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST--TEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred cchhccccccCceEEEECCCCCCHHHHHHHHhCCc--ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence 0 000012356899999999999999999999997 367999999996 34466788889999999987544322 3
Q ss_pred hhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
.++.|+. .++...+..+| +..+.+.++ ...+.|+|+||||+. ++....++.
T Consensus 248 ~~e~~~~---~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~----------~~~~~~~~~ 314 (439)
T 1mky_A 248 TVEKYSN---YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV----------VHREKRYDE 314 (439)
T ss_dssp --CCSCC---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS----------TTGGGCHHH
T ss_pred hHHHHHH---HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC----------CchhhHHHH
Confidence 4455543 22222333333 233333332 456779999999983 122222333
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
+.+.+...+. .++|++++ ++|.+ +++++.+.+++.++.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 359 (439)
T 1mky_A 315 FTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTK 359 (439)
T ss_dssp HHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 4444545443 46787777 89999 99999999998877654
No 4
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=6.6e-36 Score=320.31 Aligned_cols=331 Identities=19% Similarity=0.210 Sum_probs=215.3
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..|+|+|+|++|||||||+|+|+|...+.+...|+.|+++..... .+.+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~----------------------~~~~------ 70 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA----------------------EWLN------ 70 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC----------------------TTCS------
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE----------------------EECC------
Confidence 346679999999999999999999999988777778888877764321 1111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+..... .+ ...+..++..+++.+|++|+|+|++. +++..+.++.+.+++.++|+++|+||+
T Consensus 71 -----~~~~liDT~G~~~~~~-~~--~~~~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvilV~NK~ 141 (456)
T 4dcu_A 71 -----YDFNLIDTGGIDIGDE-PF--LAQIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAVNKL 141 (456)
T ss_dssp -----SCCEEECCCC-------CC--HHHHHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred -----ceEEEEECCCCCCcch-HH--HHHHHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEEEEEECc
Confidence 5699999999874221 11 22366777888999999999999986 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+..... ....+|.++. ...+.+||.+|.|+ .+|++.+......
T Consensus 142 D~~~~~~----~~~e~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~l~~------------- 185 (456)
T 4dcu_A 142 DNTEMRA----NIYDFYSLGF------GEPYPISGTHGLGL-------------GDLLDAVAEHFKN------------- 185 (456)
T ss_dssp -------------CCSGGGSS------SSEEECCTTTCTTH-------------HHHHHHHHTTGGG-------------
T ss_pred cchhhhh----hHHHHHHcCC------CceEEeecccccch-------------HHHHHHHHhhccc-------------
Confidence 9875321 1122344433 13468999988887 5565555321100
Q ss_pred hhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 292 RLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
. .........++++++|.+|+||||++|.|++.. ...++..++||+ ...+.+++..+.++||||+.+..+
T Consensus 186 ----~-~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~ 258 (456)
T 4dcu_A 186 ----I-PETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 258 (456)
T ss_dssp ----S-CSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTT
T ss_pred ----c-cccccccccceeEEecCCCCCHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcc
Confidence 0 001123457899999999999999999999987 478899999996 355677888999999999998887
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSST 432 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~ 432 (551)
.....++|+. .++...+..+|+ ..+.+.++ ..++.|+|+||||+.- +....
T Consensus 259 ~~~~~e~~~~---~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----------~~~~~ 325 (456)
T 4dcu_A 259 VYETTEKYSV---LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD----------KDEST 325 (456)
T ss_dssp BCCCCSHHHH---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC----------CCSSH
T ss_pred cchHHHHHHH---HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCC----------CchHH
Confidence 7777888876 344444445543 33444443 4567799999999832 22222
Q ss_pred hhhHHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 433 SNSVQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 433 ~~~~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
++...+.+.+.+. .++|++++ ++|.+ +++++.+.+++.++.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 326 MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 3334455555543 46788877 89999 99999999988777654
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.1e-23 Score=224.20 Aligned_cols=239 Identities=17% Similarity=0.194 Sum_probs=163.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++....... ++ +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~-----------------~~-----~--------- 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT-----------------YN-----Q--------- 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE-----------------ET-----T---------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE-----------------EC-----C---------
Confidence 4579999999999999999999998864344445555444321110 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHH--HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVL--EWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~--~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+.+..+ .....+....+ ..+++.+|++++|+|+.+ +.+.++..++..+...++|+++|+||+|
T Consensus 223 --~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~iiiv~NK~D 297 (436)
T 2hjg_A 223 --QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVIVVNKWD 297 (436)
T ss_dssp --EEEEETTHHHHTCBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred --eEEEEEECCCcCcCcc--ccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 3489999999865322 11222223332 347889999999999997 7888888888888888999999999999
Q ss_pred CCCHHH--HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHH
Q psy11743 213 MVDHQQ--LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290 (551)
Q Consensus 213 l~~~~~--~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~ 290 (551)
+.+..+ ..+........+. ...+.+++++||++|.|+ ..++. .+.+.+.....+.++..+|+++..
T Consensus 298 l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~SA~tg~~v-----~~l~~----~i~~~~~~~~~~~~t~~ln~~l~~ 365 (436)
T 2hjg_A 298 AVDKDESTMKEFEENIRDHFQ---FLDYAPILFMSALTKKRI-----HTLMP----AIIKASENHSLRVQTNVLNDVIMD 365 (436)
T ss_dssp GSCCCTTHHHHHHHHHHHHCG---GGTTSCEEECCTTTCTTG-----GGHHH----HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcc---cCCCCCEEEEecccCCCH-----HHHHH----HHHHHHHHhhcCCCHHHHHHHHHH
Confidence 986422 1111111112222 234568899999999998 44442 244444555566788889999999
Q ss_pred HhhhcCCCC-----------ccccCCCcEEEEEeecC-CChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 291 ARLAKAPYE-----------DADFDAKPTVMLVGQYS-TGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~~-~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
+...++||. .|....||+|+++++.. .-+.+|.+||.++ +|.|+|+....+
T Consensus 366 ~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 433 (436)
T 2hjg_A 366 AVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 433 (436)
T ss_dssp HHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEE
T ss_pred HHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEe
Confidence 888887764 26778999999999754 4499999999987 677888776554
No 6
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=5.5e-23 Score=220.04 Aligned_cols=241 Identities=17% Similarity=0.205 Sum_probs=164.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++.+...+...+++|.+....... + .+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~-----------------~-----~~-------- 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT-----------------Y-----NQ-------- 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEE-----------------E-----TT--------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEE-----------------E-----CC--------
Confidence 34689999999999999999999998754444445444443211100 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+..+ .....+.... ...++..+|++|+|+|+.. +++.++..++..+...++|+++|+||+
T Consensus 243 ---~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~~~~ilv~NK~ 316 (456)
T 4dcu_A 243 ---QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVIVVNKW 316 (456)
T ss_dssp ---EEEEETTGGGTTTBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ---ceEEEEECCCCCcCcc--cchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 3589999999876322 2222222222 2347799999999999997 888999999999888899999999999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHH
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~ 290 (551)
|+.+..+ ..+......... +....+.+++++||++|.|+ ..++. .+.+.+.....+..+..+|+++..
T Consensus 317 Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~SA~~g~gv-----~~l~~----~i~~~~~~~~~~~~t~~ln~~l~~ 385 (456)
T 4dcu_A 317 DAVDKDESTMKEFEENIRDH--FQFLDYAPILFMSALTKKRI-----HTLMP----AIIKASENHSLRVQTNVLNDVIMD 385 (456)
T ss_dssp GGSCCCSSHHHHHHHHHHHH--CGGGTTSCEEECCTTTCTTG-----GGHHH----HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHh--cccCCCCCEEEEcCCCCcCH-----HHHHH----HHHHHHHHhcccCCHHHHHHHHHH
Confidence 9985321 111112222111 11234568999999999998 44442 244445555667788889999998
Q ss_pred HhhhcCCCC-----------ccccCCCcEEEEEeec-CCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 291 ARLAKAPYE-----------DADFDAKPTVMLVGQY-STGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~-~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
+...++|+. .|...+||+|+++|+. .-=+.+|.+||.++ +|.|+|+...++
T Consensus 386 ~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 453 (456)
T 4dcu_A 386 AVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 453 (456)
T ss_dssp HHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEE
T ss_pred HHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEe
Confidence 888777764 3678999999999974 44499999999887 677888776554
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=2.1e-21 Score=206.75 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=154.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|+|.....+...+++|++...... .+.+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i----------------------~~~g--------- 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV----------------------FIDG--------- 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE----------------------EETT---------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE----------------------EECC---------
Confidence 457999999999999999999999876545556665655432111 0111
Q ss_pred CccCeEEEeCCCCCCCcccccccccch-HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.............+ ......++..+|++++|+|+.. +.+.++..+...+...++|+++|+||+|+
T Consensus 228 --~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 228 --RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp --EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred --EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 3488999999854221100000111 1123457789999999999986 77777777777787889999999999999
Q ss_pred CCHHH--HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 214 VDHQQ--LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 214 ~~~~~--~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
.+... ..+........+.. ..+.+++++||++|.|+ .++++. +.+.+..+..+.++..+|+++..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~gv-----~~l~~~----i~~~~~~~~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 305 VVHREKRYDEFTKLFREKLYF---IDYSPLIFTSADKGWNI-----DRMIDA----MNLAYASYTTKVPSSAINSALQKV 372 (439)
T ss_dssp STTGGGCHHHHHHHHHHHCGG---GTTSCEEECBTTTTBSH-----HHHHHH----HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhcc---CCCCcEEEEECCCCCCH-----HHHHHH----HHHHHHhhcccCCHHHHHHHHHHH
Confidence 86432 11111111122222 33557899999999988 344322 334444555667889999999999
Q ss_pred hhhcCCCC-------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC------CCCcccccCCC
Q psy11743 292 RLAKAPYE-------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER------DFPGIHIGPEP 340 (551)
Q Consensus 292 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~------~~~~~~v~~~~ 340 (551)
...++||. .|....||+|+++++-.-. +.+|.+||.++ +|.|+|+....
T Consensus 373 ~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~ 435 (439)
T 1mky_A 373 LAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKF 435 (439)
T ss_dssp HTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEE
T ss_pred HHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 88877763 2667899999999986544 77778888765 34456655443
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=8.1e-19 Score=178.02 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=117.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|.+|||||||+|+|+|.++..+...+++|+++...+..... +
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~---------------------~--------- 58 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN---------------------E--------- 58 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT---------------------T---------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC---------------------C---------
Confidence 3468999999999999999999999988777888888777655443210 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH-HHHHhCCCCcEEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS-IEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~-l~~l~~~~~~vilVlNK~Dl 213 (551)
.++.+|||||+.+.... -..+..+...+..++..+|++++|+|+.+ +.+..+..+ +..+...+.|+++|+||+|+
T Consensus 59 --~~i~lvDTPG~~~~~~~-~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 59 --AQIIFLDTPGIYEPKKS-DVLGHSMVEIAKQSLEEADVILFMIDATE-GWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp --EEEEEEECCCCCCCCTT-CHHHHHHHHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred --CeEEEEECcCCCccccc-hhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 45899999999864311 11123356677788999999999999996 677777666 78888788999999999999
Q ss_pred C-CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 V-DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~-~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. +..............++ +..+++.+||++|.|+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~-----~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHP-----ELTEIVPISALKGANL 169 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCT-----TCCCEEECBTTTTBSH
T ss_pred CCCHHHHHHHHHHHHHhcc-----CCCeEEEEeCCCCCCH
Confidence 8 54443333333322222 2457889999999887
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=2.5e-18 Score=165.28 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=110.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|+|||||+|+|++.. ...+...++.|.+....- ... ..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~--------------------~~~------- 78 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFS-VGP--------------------AAE------- 78 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEE-ESC--------------------TTS-------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEE-ecC--------------------CCC-------
Confidence 456899999999999999999999987 344555555554432211 100 001
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhc---cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.||||||+....... .....+...+..++.. +|++++|+|+.+ +++..+..++..+...+.|+++|+|
T Consensus 79 ----~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 79 ----PVAHLVDLPGYGYAEVPG-AAKAHWEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPTGKPIHSLLT 152 (223)
T ss_dssp ----CSEEEEECCCCCSSCCCS-THHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGGCCCEEEEEE
T ss_pred ----CcEEEEcCCCCCcccCCh-hhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEe
Confidence 469999999987642211 1112234445555544 888999999996 7788888888999888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccc---cCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKV---LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l---~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+...........+... ......+++.+||++|.|+
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred ccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 999998765433322222112111 0124568899999999887
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=1.2e-18 Score=176.00 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=111.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|.++..+...|++|+++...+.... +
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~----------------------~---------- 54 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG----------------------R---------- 54 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET----------------------T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC----------------------C----------
Confidence 35799999999999999999999998766677777777654432211 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl 213 (551)
.++.+|||||+.+... .+. ..+......++..+|++++|+|+++ +.+..+..+++.+.+. +.|+++|+||+|+
T Consensus 55 -~~l~l~DTpG~~~~~~-~l~--~~~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 55 -RQIVFVDTPGLHKPMD-ALG--EFMDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp -EEEEEEECCCCCCCCS-HHH--HHHHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred -cEEEEecCccccchhh-HHH--HHHHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCEEEEEECccc
Confidence 4589999999986422 111 1255667778899999999999986 6777777777788776 8999999999999
Q ss_pred CCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... +.+... .+ .+..+++++||++|.++
T Consensus 130 ~~~~~~~~~~~~----~~-----~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 130 AKYPEEAMKAYH----EL-----LPEAEPRMLSALDERQV 160 (301)
T ss_dssp CSSHHHHHHHHH----HT-----STTSEEEECCTTCHHHH
T ss_pred CCchHHHHHHHH----Hh-----cCcCcEEEEeCCCCCCH
Confidence 86544 322211 11 23446889999887766
No 11
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.77 E-value=1.8e-18 Score=172.94 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=107.9
Q ss_pred EeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH
Q psy11743 142 VDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMR 221 (551)
Q Consensus 142 IDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~ 221 (551)
=+-||+.. ...+++...+.++|+|++|+|++. +.+.....+.+++ .++|.++|+||+|+.+.... +
T Consensus 4 ~w~PGhm~----------ka~~~~~~~l~~aDvVl~VvDAr~-p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~-~ 69 (282)
T 1puj_A 4 QWFPGHMA----------KARREVTEKLKLIDIVYELVDARI-PMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT-Q 69 (282)
T ss_dssp -----CTT----------HHHHHHHHHGGGCSEEEEEEETTS-TTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH-H
T ss_pred cCCchHHH----------HHHHHHHHHHhhCCEEEEEEeCCC-CCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH-H
Confidence 35788864 156788899999999999999997 4554433444444 47999999999999986443 2
Q ss_pred HHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCcc
Q psy11743 222 VYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDA 301 (551)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 301 (551)
.+...+... ..+++++||.++.++ .+|++.+..+.. +...+... . .
T Consensus 70 ~~~~~~~~~-------g~~~i~iSA~~~~gi-------------~~L~~~i~~~l~--------~~~~~~~~-~-----~ 115 (282)
T 1puj_A 70 QWKEHFENQ-------GIRSLSINSVNGQGL-------------NQIVPASKEILQ--------EKFDRMRA-K-----G 115 (282)
T ss_dssp HHHHHHHTT-------TCCEEECCTTTCTTG-------------GGHHHHHHHHHH--------HHHHHHHH-T-----T
T ss_pred HHHHHHHhc-------CCcEEEEECCCcccH-------------HHHHHHHHHHHH--------HHHHHHHh-c-----C
Confidence 233333211 236788999988887 334444422211 00100000 0 0
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
....+++++++|.|||||||++|+|.+.. .+.++..|++|+..+....+..+.++||||+..+..
T Consensus 116 ~~~~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 116 VKPRAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 180 (282)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEEETTTEEEEECCCCCCSCC
T ss_pred CCCCCceEEEEecCCCchHHHHHHHhcCc--eeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCC
Confidence 12356899999999999999999999987 478999999998655444466889999999998764
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=2.3e-17 Score=154.38 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=105.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++.........++.|.+...... +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~-------------- 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-------------------N-------------- 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-------------------T--------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-------------------C--------------
Confidence 4568999999999999999999999885444444444433321100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc---CEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV---DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
..+.+|||||+....... .....+......++..+ |++++|+|+.. .....+..+..++...+.|+++|+||
T Consensus 68 ---~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK 142 (195)
T 3pqc_A 68 ---SKYYFVDLPGYGYAKVSK-KERMLWKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSLNIPFTIVLTK 142 (195)
T ss_dssp ---TTEEEEECCCBSSSCCCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---CcEEEEECCCCccccCCh-hhHHHHHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 348899999976532111 11122344444555544 99999999986 67777778888888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+............. .....+++.+||++|.|+
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFS---KYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHH---SSCCSCEEECCTTTCTTH
T ss_pred hhcCChHHHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence 999865433222221111111 123357889999999887
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.4e-17 Score=156.27 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=101.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+ ......++.|.+..... .+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------------------~~------------- 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-------------------IN------------- 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-------------------ET-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE-------------------EC-------------
Confidence 3568999999999999999999999873 22233333333222110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc---CEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV---DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+...... ......+......++..+ |++++|+|+.+ +.+..+..++.++...+.|+++|+|
T Consensus 69 ----~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~i~v~n 142 (195)
T 1svi_A 69 ----DELHFVDVPGYGFAKVS-KSEREAWGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGIPVIVIAT 142 (195)
T ss_dssp ----TTEEEEECCCBCCCSSC-HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----CcEEEEECCCCCccccC-HHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 35899999998653221 111122445555666666 99999999986 6777777778888878899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++..........+.. ....+++.+||++|.|+
T Consensus 143 K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 143 KADKIPKGKWDKHAKVVRQTLNI---DPEDELILFSSETKKGK 182 (195)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHTC---CTTSEEEECCTTTCTTH
T ss_pred CcccCChHHHHHHHHHHHHHHcc---cCCCceEEEEccCCCCH
Confidence 99998765443322222211222 23457889999999887
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.6e-17 Score=155.67 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=90.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +.... . .
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~-----------------~----~-------- 63 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDG-----------------N----K-------- 63 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT-----------------E----E--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECC-----------------e----E--------
Confidence 45799999999999999999999987531 1122111121111 11100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 64 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 64 ---AKLAIWDTAGQER-----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp ---EEEEEEEECSSGG-----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred ---EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence 3489999999653 333456678999999999999852212222345555543 3688999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+......... ..+++.+||+++.|+
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 130 KIDKENREVDRNEGLKFARKH-------SMLFIEASAKTCDGV 165 (195)
T ss_dssp CTTSSSCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred CCcCcccccCHHHHHHHHHHc-------CCEEEEecCCCCCCH
Confidence 999954211111111111111 236788999999887
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.70 E-value=4.6e-17 Score=164.48 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=105.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|..+..+...+++|+++...+.... .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~----------------------~---------- 55 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG----------------------A---------- 55 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET----------------------T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC----------------------C----------
Confidence 35899999999999999999999987555556666666554432211 0
Q ss_pred ccCeEEEeCCCCC-CCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGIL-SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~-~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
.++.++||||+. ... ..+. ..+...+..++..+|++++|+|+.. ++..+..+++.+...+.|+++|+||+|+.
T Consensus 56 -~~i~~iDTpG~~~~~~-~~l~--~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 -YQAIYVDTPGLHMEEK-RAIN--RLMNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp -EEEEEESSSSCCHHHH-HHHH--HHHTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred -eeEEEEECcCCCccch-hhHH--HHHHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 358999999997 211 1010 0122233445689999999999974 77777778888887889999999999998
Q ss_pred C-HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 D-HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~-~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .....+...... . ......++.+||+++.++
T Consensus 130 ~~~~~~~~~l~~l~-~-----~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 130 QEKADLLPHLQFLA-S-----QMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHHHHHHHHHH-T-----TSCCSEEEECCTTTTTTH
T ss_pred ccHHHHHHHHHHHH-H-----hcCcCceEEEECCCCCCH
Confidence 7 444333332221 1 112346789999998887
No 16
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.69 E-value=4.8e-17 Score=168.88 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=109.6
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQT 236 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~~ 236 (551)
|.+.+..+.++++++++|+|++++. .....++.+.+ .++|+++|+||+|+++.+ ...+.....+...+ .
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~-~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g----~ 133 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN-GSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG----L 133 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG-GGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT----C
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC-CchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC----C
Confidence 7778888889999999999999632 22222333333 268999999999998752 22222222222222 2
Q ss_pred CCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 237 PEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 237 ~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
...+++++||++|.|+ ++|++.+..+ . ...+++++|.+|
T Consensus 134 ~~~~v~~iSA~~g~gi-------------~~L~~~I~~~------------~----------------~~~~i~~vG~~n 172 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGM-------------AKVMEAINRY------------R----------------EGGDVYVVGCTN 172 (369)
T ss_dssp CCSEEEECBTTTTBTH-------------HHHHHHHHHH------------H----------------TTSCEEEECCTT
T ss_pred CcccEEEEECCCCCCH-------------HHHHHHHHhh------------c----------------ccCcEEEEcCCC
Confidence 2246789999998887 4555544211 0 134799999999
Q ss_pred CChhHHHHHHHhC-----CCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLER-----DFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~-----~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+||||++|+|++. . .+.++..|+||+......-+..+.++||||+.++.
T Consensus 173 vGKStliN~L~~~~~~~~~--~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 173 VGKSTFINRIIEEATGKGN--VITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp SSHHHHHHHHHHHHHHTTC--CCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred CchHHHHHHHHhhccCCcc--ceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 9999999999998 3 37789999999865544445568999999998765
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=2.9e-17 Score=162.10 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=98.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|+|... .+...|+.|.+....... ++ +
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~-----------------~~-----~----------- 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFL-----------------LG-----E----------- 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEE-----------------ET-----T-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEE-----------------EC-----C-----------
Confidence 6899999999999999999999863 234445555554433211 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+....... ..........++ .++|++++|+|+++ ......+..++.+.+.|+++|+||+|+.
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~-~~~~e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEG-ISQDEQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEEECCCCSSCC-------CHHHHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred eEEEEEeCCCcccccccccC-CCHHHHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 35899999999763221000 001123444555 89999999999985 2455567778888899999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...............++ .+++.+||++|.|+
T Consensus 124 ~~~~~~~~~~~l~~~lg-------~~vi~~SA~~g~gi 154 (256)
T 3iby_A 124 EHRGISIDTEKLESLLG-------CSVIPIQAHKNIGI 154 (256)
T ss_dssp HHTTCEECHHHHHHHHC-------SCEEECBGGGTBSH
T ss_pred CcCCcHHHHHHHHHHcC-------CCEEEEECCCCCCH
Confidence 44321111111222222 37899999999887
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=2e-16 Score=143.25 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=96.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|+|||||+|+|++.........+..|.+....... + .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-----~~----------- 48 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE-----------------T-----DR----------- 48 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE-----------------E-----TT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE-----------------e-----CC-----------
Confidence 68999999999999999999998754333333333332221110 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.++||||...... . ...+......++..+|++++|+|+++ ..+.....+...+...+.|+++|+||+|+.+.
T Consensus 49 ~~~~l~Dt~G~~~~~~--~--~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDK--W--EKKIQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp EEEEEEECGGGCSSSS--C--CHHHHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred ceEEEEECCCCCCccc--h--HHHHHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3488999999876321 1 11245556677899999999999996 67777667777777778999999999999865
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++. . ..+. .....+.+.+||++|.|+
T Consensus 124 ~~~---~-~~~~------~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 124 ELY---L-GPLY------GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp GGG---C-GGGG------GGSSCSCEECBTTTTBSH
T ss_pred hHh---H-HHHH------hCCCCCeEEEecccCCCh
Confidence 211 0 1111 112225788999998887
No 19
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.68 E-value=8.8e-17 Score=148.31 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=95.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+... .+.. .+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------~~------- 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTV-----------------------ND------- 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEE-----------------------TT-------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEe-----------------------CC-------
Confidence 356899999999999999999999987531 112222211110 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||...-.. .....+..+|++++|+|+.+ +......+.+..+...+.|+++|+||+|
T Consensus 55 ----~~~~l~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 55 ----KKITFLDTPGHEAFTT-----------MRARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIVAINKMD 118 (178)
T ss_dssp ----EEEEESCCCSSSSSSC-----------SCCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEEEEETTT
T ss_pred ----ceEEEEECCCCHHHHH-----------HHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEEEEECcc
Confidence 3478999999865211 11233578999999999986 5666666777777777899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCC--CceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTP--EVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~--~~~~v~iSa~~g~~~ 252 (551)
+.+... .+ ....+.....+.... ..+++.+||++|.|+
T Consensus 119 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 119 KPEANP-DR-VMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp SSCSCH-HH-HHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred CCcCCH-HH-HHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 986311 11 111222222221111 257899999988877
No 20
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=1e-16 Score=150.79 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=93.0
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....++|+|+|.+|||||||+|+|++..+..+ ...+|.......... ..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--~~~~t~~~~~~~~~~----------------------~~------- 62 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK--HITATVGYNVETFEK----------------------GR------- 62 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC------CCCCCSSEEEEEEEE----------------------TT-------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc--ccccccceeEEEEEe----------------------CC-------
Confidence 34568999999999999999999999886422 223343321111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----------C
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----------D 201 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----------~ 201 (551)
..+.+|||||... +......++..+|++|+|+|+.+.........++..+... +
T Consensus 63 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (199)
T 4bas_A 63 ----VAFTVFDMGGAKK-----------FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR 127 (199)
T ss_dssp ----EEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB
T ss_pred ----EEEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC
Confidence 3589999999854 3334445678999999999998622222333444444433 7
Q ss_pred CcEEEEEcCCCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 202 DKIRIVLNKADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+++|+||+|+... +++.+.+. +.........+++.+||++|.|+
T Consensus 128 ~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~g~gv 176 (199)
T 4bas_A 128 VPFLFFANKMDAAGAKTAAELVEILD-----LTTLMGDHPFVIFASNGLKGTGV 176 (199)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHHT-----HHHHHTTSCEEEEECBTTTTBTH
T ss_pred CCEEEEEECcCCCCCCCHHHHHHHhc-----chhhccCCeeEEEEeeCCCccCH
Confidence 899999999999865 33322221 11111223457889999999887
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=4.2e-17 Score=148.68 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=77.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++.........++.+... .+.... ..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~~-------------- 48 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR--SIVVDG-----------------EE-------------- 48 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE--EEEETT-----------------EE--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE--EEEECC-----------------EE--------------
Confidence 468999999999999999999987754333333333221 111110 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||+
T Consensus 49 -~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 49 -ASLMVYDIWEQDG-----------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp -EEEEEEECC--------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred -EEEEEEECCCCcc-----------chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 3488999999764 334455667899999999999852211222344444432 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..+........+. .. ...+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~~~-~~-----~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 117 DLVRSREVSVDEGRACA-VV-----FDCKFIETSAALHHNV 151 (166)
T ss_dssp TCCSSCCSCHHHHHHHH-HH-----TTCEEEECBGGGTBSH
T ss_pred ccccccccCHHHHHHHH-HH-----hCCcEEEeccCCCCCH
Confidence 99754221111111111 11 1247889999999887
No 22
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.68 E-value=6.9e-17 Score=159.72 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=99.1
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..++++..+.++|+|++|+|++. +.+.....+. .+ ++|.++|+||+|+++..... .+...+...+ .+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~-P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~-~~~~~~~~~g-------~~ 77 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARA-PFATSAYGVD-FS---RKETIILLNKVDIADEKTTK-KWVEFFKKQG-------KR 77 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTS-TTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHH-HHHHHHHHTT-------CC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCC-CCcCcChHHH-hc---CCCcEEEEECccCCCHHHHH-HHHHHHHHcC-------Ce
Confidence 35678888999999999999996 4443322222 22 79999999999999865432 2333332222 24
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
+ ++||.++.|+ ++|++.+... -.+++++|.||||||
T Consensus 78 v-~iSa~~~~gi-------------~~L~~~l~~~------------------------------~~~v~~vG~~~vGKS 113 (262)
T 3cnl_A 78 V-ITTHKGEPRK-------------VLLKKLSFDR------------------------------LARVLIVGVPNTGKS 113 (262)
T ss_dssp E-EECCTTSCHH-------------HHHHHHCCCT------------------------------TCEEEEEESTTSSHH
T ss_pred E-EEECCCCcCH-------------HHHHHHHHHh------------------------------hhheEEeCCCCCCHH
Confidence 5 8999887765 4455544211 058999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|++|.|.+... +.++..||+|+.......+..+.++||||+..+..
T Consensus 114 slin~l~~~~~--~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 114 TIINKLKGKRA--SSVGAQPGITKGIQWFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp HHHHHHHTTCC------------CCSCEEECTTSCEEESSCEECCCCC
T ss_pred HHHHHHhcccc--cccCCCCCCccceEEEEeCCCEEEEECCCcccCcC
Confidence 99999999873 57888999998555444466889999999998763
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=3.2e-17 Score=163.46 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|+|... .+...|+.|.+.....+... +
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~----------------------~--------- 49 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTT----------------------D--------- 49 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECS----------------------S---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeC----------------------C---------
Confidence 468999999999999999999999873 34455666655543322110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH-HHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+... ........ .....+ ...+|++++|+|+++ ......+...+.+.+.|+++|+||+
T Consensus 50 --~~~~liDtpG~~~~~~--~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~ivv~NK~ 122 (274)
T 3i8s_A 50 --HQVTLVDLPGTYSLTT--ISSQTSLDEQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIPCIVALNML 122 (274)
T ss_dssp --CEEEEEECCCCSCSCC------CCHHHHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEEEEEECH
T ss_pred --CceEEEECcCCCcccc--ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEEEEEECc
Confidence 3589999999986331 11001122 222333 379999999999985 2444566667777789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .+++.+||++|.|+
T Consensus 123 Dl~~~~~~~~~~~~l~~~lg-------~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 123 DIAEKQNIRIEIDALSARLG-------CPVIPLVSTRGRGI 156 (274)
T ss_dssp HHHHHTTEEECHHHHHHHHT-------SCEEECCCGGGHHH
T ss_pred cchhhhhHHHHHHHHHHhcC-------CCEEEEEcCCCCCH
Confidence 98643221111111112222 36889999988776
No 24
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=2.8e-16 Score=142.44 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=89.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|++..+. .....++.+.......-. +. .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~----------------~~----~---------- 50 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVID----------------GE----T---------- 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET----------------TE----E----------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEEC----------------CE----E----------
Confidence 468999999999999999999998753 222222222221110000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 51 -~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 -CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp -EEEEEEECCCCSS-----------CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred -EEEEEEECCCchh-----------hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 2478999999764 34455667889999999999985211122233443333 2378999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.........+ .+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 119 DLAARTVESRQAQDLARSYG-------IPYIETSAKTRQGV 152 (166)
T ss_dssp TCSCCCSCHHHHHHHHHHHT-------CCEEEECTTTCTTH
T ss_pred hhhhcccCHHHHHHHHHHcC-------CeEEEecCCCCCCH
Confidence 98763211111122221222 36788999998887
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.67 E-value=4.4e-16 Score=144.89 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++..+. ...+.++.+.......-+ +..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~~-------------- 51 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVID----------------GET-------------- 51 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEET----------------TEE--------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEEC----------------CcE--------------
Confidence 468999999999999999999998752 222223333222111100 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 52 -~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 119 (189)
T 4dsu_A 52 -CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119 (189)
T ss_dssp -EEEEEEECCCC--------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECT
T ss_pred -EEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECc
Confidence 2378899999764 33345567789999999999985211112233333332 3478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.........+ .+++.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 120 DLPSRTVDTKQAQDLARSYG-------IPFIETSAKTRQGV 153 (189)
T ss_dssp TSSSCSSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred cCcccccCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99753211111122221122 36788999999987
No 26
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=2.1e-16 Score=143.93 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=89.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++..+. ....+|+......... +.+ .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~~----------~--------------- 49 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVE-----VDC----------Q--------------- 49 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC---CSCCCCSEEEEEEEEE-----SSS----------C---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCccceEEEEEE-----ECC----------E---------------
Confidence 468999999999999999999997652 2222332221110000 000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 50 ~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 50 QCMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEEECSSCS-----------STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 03488999999764 33455667889999999999985211111123333332 3478999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.... .+........ .+..+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 119 DLEDERVVGKEQGQNLARQ------WCNCAFLESSAKSKINV 154 (167)
T ss_dssp TCGGGCCSCHHHHHHHHHH------TTSCEEEECBTTTTBSH
T ss_pred cccccccCCHHHHHHHHHH------ccCCcEEEecCCCCCCH
Confidence 99753211 1111111111 12347889999999887
No 27
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=1.8e-16 Score=160.85 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=89.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCC-----------ccc---cCCCCcc---cccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER-----------EGS---VPFSPLD---KFGK 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~-----------~~~---i~g~~~~---~~~~ 117 (551)
..|+|+|+|.+|+|||||+|+|+|..+. +.+.+.+|.....+..... ... .++..+. .+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~l--p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCC--CC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcC--CCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 4689999999999999999999999862 3333333333221111100 000 0111111 0000
Q ss_pred c---------c--cccccceeEEecCCCCccCeEEEeCCCCCCCcccc--cccccchHHHHHHHHhccCEEEEEEeCCCC
Q psy11743 118 F---------G--NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR--VDRGYDFTGVLEWFAERVDRIILLFDAHKL 184 (551)
Q Consensus 118 ~---------g--~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~~~~~~~~~~~~aD~il~VvDa~~~ 184 (551)
+ | ..+......+.+..+-..++.+|||||+....... ......+...+..++..+|++++|+|+...
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 0 0 01111112222222223579999999997522110 111123566778889999999999997433
Q ss_pred CCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 185 DISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 185 ~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
+....+ ..+++.+...+.|+++|+||+|+.+..
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 554333 477888888889999999999998643
No 28
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.67 E-value=5.6e-16 Score=141.75 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=92.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||+|+|++..+. . ..||...... +.+. .
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~-----------------------~-------- 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--T--TIPTIGFNVETVTYK-----------------------N-------- 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--C--CCCCSSEEEEEEEET-----------------------T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCccceEEEEEC-----------------------C--------
Confidence 4589999999999999999999998753 1 2233322111 1110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+ .. .+.|+++|+|
T Consensus 51 ---~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 51 ---LKFQVWDLGGLTS-----------IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp ---EEEEEEEECCCGG-----------GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCChh-----------hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 4589999999854 2333445568999999999998632222233344333 32 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. .... ..... .....+++.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 117 KQDMEQAMTSSEM-ANSL-GLPAL-KDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp CTTSTTCCCHHHH-HHHH-TGGGC-TTSCEEEEECCTTTCTTH
T ss_pred CCCCcCCCCHHHH-HHHh-Cchhc-cCCceEEEECcCCCCcCH
Confidence 9999864221111 1111 11111 223347889999999887
No 29
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.67 E-value=1e-16 Score=149.93 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=91.0
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
..+...+|+|+|.+|||||||+|+|++..+... ..+..+.+.... +.... . .
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~----- 70 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHD-----------------K----R----- 70 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCCCEEEEEEEEETT-----------------E----E-----
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC-cCCceeEEEEEEEEEECC-----------------e----E-----
Confidence 344568999999999999999999999875321 112111111111 11000 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
..+.+|||||...- ......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 ------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 133 (189)
T 2gf9_A 71 ------IKLQIWDTAGQERY-----------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133 (189)
T ss_dssp ------EEEEEEECCSCCSS-----------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------EEEEEEeCCCcHHH-----------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34899999997642 22234456899999999999852211222345554443 47899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+...+ .+.........+ .+++.+||++|.|+
T Consensus 134 ~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 134 GNKCDLEDERVVPAEDGRRLADDLG-------FEFFEASAKENINV 172 (189)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHHT-------CEEEECBTTTTBSH
T ss_pred EECcccccccCCCHHHHHHHHHHcC-------CeEEEEECCCCCCH
Confidence 999999753211 011111221222 36789999999887
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=9e-17 Score=148.92 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|++..+. ...+.++.+........+ +.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~--------------- 52 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVN----------------GQ--------------- 52 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET----------------TE---------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEEC----------------CE---------------
Confidence 578999999999999999999987742 222222222221111100 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~ 211 (551)
...+.+|||||...-. .....++..+|++++|+|+.+.........++..+ ...+.|+++|+||+
T Consensus 53 ~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 121 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYS-----------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121 (181)
T ss_dssp EEEEEEEECCCCCTTC-----------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECT
T ss_pred EEEEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 0247899999987521 12223457899999999998522111222333333 23478999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...+. +......... ..+.+.+||++|.|+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 122 DLHMERVISYEEGKALAESW-------NAAFLESSAKENQTA 156 (181)
T ss_dssp TCTTTCCSCHHHHHHHHHHT-------TCEEEECCTTSHHHH
T ss_pred cchhcceecHHHHHHHHHHh-------CCcEEEEecCCCCCH
Confidence 996432211 1111222112 236788999887776
No 31
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.66 E-value=2.4e-16 Score=158.64 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCC-ccc---cCCCCcccccc-----------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDER-EGS---VPFSPLDKFGK----------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~-~~~---i~g~~~~~~~~----------- 117 (551)
..|+|+|+|.+|||||||+|+|+|.++.. ...+.++.... .+.+... ... ..|..|.....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~--~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLP--RGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSC--CCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCC--CCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999998642 12112221111 1111110 000 01111111100
Q ss_pred c-c--cccccceeEEecCCCCccCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhccCEEE-EEEeCCCCCCChHHH
Q psy11743 118 F-G--NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAERVDRII-LLFDAHKLDISDEFR 191 (551)
Q Consensus 118 ~-g--~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~aD~il-~VvDa~~~~~~~~~~ 191 (551)
. | ..+......+.+..+-...+.+|||||+.......... ...+...+..++..++.++ +|+|+.. +.+..+.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS-CGGGCHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc-chhhhHH
Confidence 0 0 11111111122222222579999999997532100000 0125666777888888666 7999986 5555553
Q ss_pred -HHHHHHhCCCCcEEEEEcCCCCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 192 -RSIEALRGHDDKIRIVLNKADMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 192 -~~l~~l~~~~~~vilVlNK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+++.+...+.|+++|+||+|+.+... ..+... .........+.+++.+||++|.|+
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLE----NKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHT----TCSSCCTTCEEECCCCCCBCTTSC
T ss_pred HHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHh----CCcCcCCCCcEEEECCChhhcccc
Confidence 577777777899999999999986432 111111 100101123457788999999988
No 32
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=5.3e-16 Score=172.53 Aligned_cols=193 Identities=17% Similarity=0.143 Sum_probs=121.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccc------cCCCCcc---cc---------
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGS------VPFSPLD---KF--------- 115 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~------i~g~~~~---~~--------- 115 (551)
...|+|+|+|.+|+|||||+|+|+|.++ ++.+.+++|.+.+.+........ ..+..+. .+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~--LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC--SCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc--cCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 3569999999999999999999999886 45666677776555433221111 1111111 11
Q ss_pred --cccccccccceeEEecCCCCccCeEEEeCCCCCCCccc--ccccccchHHHHHHHH-hccCEEEEEEeCCCCCCChHH
Q psy11743 116 --GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQ--RVDRGYDFTGVLEWFA-ERVDRIILLFDAHKLDISDEF 190 (551)
Q Consensus 116 --~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~--~~~~~~~~~~~~~~~~-~~aD~il~VvDa~~~~~~~~~ 190 (551)
...+..+......+.+..+...+++||||||+...... ..+....+...+..++ ..+|++|+|+|++. +....+
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~-~~~~~d 205 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSD 205 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS-CSSSCH
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC-CcchhH
Confidence 01112233333444555555578999999999873211 1000112445555555 58899999999996 666666
Q ss_pred H-HHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 191 R-RSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 191 ~-~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .++..+...++|+++|+||+|+++.......+ ...........+.+++++||++|.|+
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~i---l~~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHH---HTTCSSCCSSCEEECCCCCCEESSSS
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHH---HHHHhhhhhccCCceEEecccccccc
Confidence 5 78888888899999999999998754321111 11000001234567889999999987
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=144.79 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=84.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+......++.+...... .... .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~-------------- 50 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTL-TVDG-----------------E-------------- 50 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEE-EETT-----------------E--------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEE-EECC-----------------E--------------
Confidence 3578999999999999999999998764333333222211111 1110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||.... ++......++..+|++++|+|+.+.........+...+.. .+.|+++|+||
T Consensus 51 -~~~~~~~D~~g~~~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 51 -DTTLVVVDTWEAEKL---------DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp -EEEEEEECCC----------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred -EEEEEEEecCCCCcc---------chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 024889999998641 1223344566889999999999852211222344444443 27899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. +......... ..+.+.+||++|.|+
T Consensus 121 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 121 ADLARCREVSVEEGRACAVVF-------DCKFIETSATLQHNV 156 (175)
T ss_dssp TTCTTTCCSCHHHHHHHHHHH-------TSEEEECBTTTTBSH
T ss_pred hhhccccccCHHHHHHHHHHc-------CCeEEEEecCCCCCH
Confidence 9997542211 1111111111 236788999999887
No 34
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.66 E-value=9.6e-16 Score=139.31 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=91.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+. . ..||......... + ..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~-----------------~-----~~----------- 43 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVE-----------------Y-----KN----------- 43 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--C--CCCCSSCCEEEEE-----------------C-----SS-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--c--ccCcCceeEEEEE-----------------E-----CC-----------
Confidence 37999999999999999999988753 1 2334332111000 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.+|||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|
T Consensus 44 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 44 ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEEEcCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 3589999999853 455667788999999999999852212222334444332 3789999999999
Q ss_pred CCCHHHHHHHHHHHHHHccc-ccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGK-VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+ +... ++. .......+++.+||++|.|+
T Consensus 113 l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 113 LPNAMNAAE-ITDK---LGLHSLRHRNWYIQATCATSGDGL 149 (164)
T ss_dssp STTCCCHHH-HHHH---TTGGGCSSCCEEEEECBTTTTBTH
T ss_pred CcCCCCHHH-HHHH---hCcccccCccEEEEEcccCCCcCH
Confidence 976422111 1111 221 11223346889999998887
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.5e-16 Score=145.44 Aligned_cols=149 Identities=18% Similarity=0.153 Sum_probs=86.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|+|||||+|+|++..+... ...+|+........-. +. +.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~t~~~~~~~~~~~----~~----------~~-------------- 58 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAG--TFISTVGIDFRNKVLD----VD----------GV-------------- 58 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCC--CCCCCCSCEEEEEEEE----ET----------TE--------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCC--CcCCceeeEEEEEEEE----EC----------CE--------------
Confidence 457999999999999999999999886322 2223322211100000 00 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 59 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 126 (180)
T 2g6b_A 59 -KVKLQMWDTAGQER-----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126 (180)
T ss_dssp -EEEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred -EEEEEEEeCCCcHH-----------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 02489999999754 34445566789999999999985211112234444443 3578999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...+. +......... ..+.+.+||+++.|+
T Consensus 127 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 127 DSAHERVVKREDGEKLAKEY-------GLPFMETSAKTGLNV 161 (180)
T ss_dssp STTSCCCSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred ccCcccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 998532110 1111111111 136788999999887
No 36
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.66 E-value=3.4e-16 Score=142.29 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+. ...+.++.+.... +.... . .
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~----~-------- 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------E----E-------- 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETT-----------------E----E--------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECC-----------------E----E--------
Confidence 3578999999999999999999998752 2222222222211 11100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 52 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 52 ---VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp ---EEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred ---EEEEEEECCCcch-----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 2488999999754 45566778899999999999985221122223333332 24789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+++.+||++|.|+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 118 KSDLEDKRQVSVEEAKNRADQW-------NVNYVETSAKTRANV 154 (168)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CccccccCccCHHHHHHHHHHc-------CCeEEEeCCCCCCCH
Confidence 9999653211 01111111111 236788999999887
No 37
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=4.4e-16 Score=143.94 Aligned_cols=147 Identities=12% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.... .+..+.+... .+.... .
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~------------- 59 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVND-----------------A------------- 59 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETT-----------------E-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECC-----------------E-------------
Confidence 4478999999999999999999998763221 1111111111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 60 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 60 --TVKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp --EEEEEEEECCCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --EEEEEEEeCCCChh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 03489999999643 344456678899999999999852211233445554443 36889999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++ .+......... ..+++.+||++|.|+
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQEN-------GLFFMETSAKTATNV 162 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHT-------TCEEEECCSSSCTTH
T ss_pred CcccccccCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 999753221 11111121111 236788999999887
No 38
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.66 E-value=1e-16 Score=166.19 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=103.6
Q ss_pred chHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccc
Q psy11743 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKV 233 (551)
Q Consensus 160 ~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l 233 (551)
.|.+.+..+.+.+|++++|+|++++ ...+...+.+ .++|+++|+||+|+.+.+ ...+.........+
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~-----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g-- 130 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDF-----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG-- 130 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSH-----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhccCcEEEEEEECCCC-----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC--
Confidence 3777888888899999999999852 1222222221 378999999999998643 22222222222222
Q ss_pred cCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEe
Q psy11743 234 LQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVG 313 (551)
Q Consensus 234 ~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 313 (551)
....+++++||++|.|+ ++|++.+..+ . ...+++++|
T Consensus 131 --~~~~~v~~iSA~~g~gi-------------~~L~~~l~~~------------~----------------~~~~i~~vG 167 (368)
T 3h2y_A 131 --LKPEDVFLISAAKGQGI-------------AELADAIEYY------------R----------------GGKDVYVVG 167 (368)
T ss_dssp --CCCSEEEECCTTTCTTH-------------HHHHHHHHHH------------H----------------TTSCEEEEE
T ss_pred --CCcccEEEEeCCCCcCH-------------HHHHhhhhhh------------c----------------ccceEEEec
Confidence 22236789999999987 4555554211 0 135799999
Q ss_pred ecCCChhHHHHHHHhCCC----CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 314 QYSTGKTTFIRYLLERDF----PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 314 ~~~~gKss~~n~l~~~~~----~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
.+|+||||++|+|++... ....++..|+||+......-+..+.++||||+.++.
T Consensus 168 ~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 168 CTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp BTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred CCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 999999999999999731 125689999999855544334458999999998865
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.65 E-value=3.8e-16 Score=142.61 Aligned_cols=147 Identities=21% Similarity=0.284 Sum_probs=91.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.. ...+.+..+... .+.... .
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~------------- 53 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQN-----------------E------------- 53 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT-----------------E-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECC-----------------e-------------
Confidence 45789999999999999999999987532 112211111111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
...+.+|||||+.. +......++..+|++++|+|+.+.........++..+. ....|+++|+||
T Consensus 54 --~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK 120 (170)
T 1z0j_A 54 --LHKFLIWDTAGLER-----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120 (170)
T ss_dssp --EEEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred --EEEEEEEcCCCchh-----------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 03489999999853 34455667899999999999985222222234555444 346789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+.. +......... ..+++.+||++|.|+
T Consensus 121 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 121 CDLTDVREVMERDAKDYADSI-------HAIFVETSAKNAINI 156 (170)
T ss_dssp TTCGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred CccccccccCHHHHHHHHHHc-------CCEEEEEeCCCCcCH
Confidence 9997532211 1111111111 246788999998887
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.65 E-value=4.7e-16 Score=143.24 Aligned_cols=148 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+... ..+..+.+.... +.... . .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~------- 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVSG-----------------Q----K------- 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-CTTSCCCCEEEEEEEETT-----------------E----E-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECC-----------------e----E-------
Confidence 3458999999999999999999999875311 111111111111 11100 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 64 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 128 (179)
T 1z0f_A 64 ----IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128 (179)
T ss_dssp ----EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEECCCChH-----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3489999999643 45566778899999999999985211122233443333 35789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+++.+||++|.|+
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 129 KADLEAQRDVTYEEAKQFAEEN-------GLLFLEASAKTGENV 165 (179)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred CcccccccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999643211 11111222111 236789999999887
No 41
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.65 E-value=2.7e-17 Score=157.58 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=88.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+.............. ..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------------------------------~~ 58 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDD------------------------------QG 58 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBT------------------------------TS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeC------------------------------CC
Confidence 45799999999999999999999877531 111111111111111100 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~---~~~~~vilVlNK 210 (551)
....+.+|||||... +......++..+|++++|+|+.+ ..+.. ...++..+. ..+.|+++|+||
T Consensus 59 ~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 59 NVIKFNVWDTAGQEK-----------KAVLKDVYYIGASGAILFFDVTS-RITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp CEEEEEEEEECSGGG-----------TSCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred cEEEEEEEecCCchh-----------hchHHHHHhhcCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 002389999999754 12223456788999999999985 22222 223333333 446899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++.......+ . .....+++.+||++|.|+
T Consensus 127 ~Dl~~~~~~~~~~~~~~---~---~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEV---L---KGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp TTCC----CCHHHHHHH---T---TTCCCEEEEEBTTTTBTT
T ss_pred CCCccccccCHHHHHHH---H---HHcCCcEEEEecCCCCCH
Confidence 99986533222111111 1 223457899999999998
No 42
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=7.9e-16 Score=148.75 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=93.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++..+. ....+..|.+....... + ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~--------- 75 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFD-----------------H-----KL--------- 75 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEE-----------------E-----TT---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeee-----------------c-----CC---------
Confidence 4689999999999999999999998752 12222222222111000 0 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC---hHHHHHHHHHhCC--CCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS---DEFRRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~---~~~~~~l~~l~~~--~~~vilVlN 209 (551)
..+.+|||||+.+.... ++.......+..+...+|++++|+|+++ ..+ .....++..+... +.|+++|+|
T Consensus 76 --~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~l~~~~~~~piilv~n 150 (228)
T 2qu8_A 76 --NKYQIIDTPGLLDRAFE--NRNTIEMTTITALAHINGVILFIIDISE-QCGLTIKEQINLFYSIKSVFSNKSIVIGFN 150 (228)
T ss_dssp --EEEEEEECTTTTTSCGG--GCCHHHHHHHHHHHTSSEEEEEEEETTC-TTSSCHHHHHHHHHHHHTCC-CCCEEEEEE
T ss_pred --CeEEEEECCCCcCcccc--hhhhHHHHHHHHhhccccEEEEEEeccc-ccCcchHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 34899999999653211 1100002233445688999999999986 322 2234566667665 799999999
Q ss_pred CCCCCCHHHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.. .........+ +..+++.+||++|.|+
T Consensus 151 K~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gi 192 (228)
T 2qu8_A 151 KIDKCNMDSLSIDNKLLIKQILDNVK-----NPIKFSSFSTLTGVGV 192 (228)
T ss_dssp CGGGCC--CCCHHHHHHHHHHHHHCC-----SCEEEEECCTTTCTTH
T ss_pred CcccCCchhhHHHHHHHHHHHHHhcC-----CCceEEEEecccCCCH
Confidence 999986533211 1111111111 2257889999999988
No 43
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.65 E-value=2.8e-16 Score=146.89 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=84.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+++|.+|||||||+|+|++..+. .....++.+.... +... +..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~----------- 68 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVID-----------------GET----------- 68 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET-----------------TEE-----------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEEC-----------------CEE-----------
Confidence 44579999999999999999999998753 2222222222211 1100 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 69 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 69 ----CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp ----EEEEEEECCC----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred ----EEEEEEECCChHH-----------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 2388999999754 34455567889999999999985211112233333333 2478999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+.........+ .+++.+||+++.|+
T Consensus 134 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 170 (190)
T 3con_A 134 NKCDLPTRTVDTKQAHELAKSYG-------IPFIETSAKTRQGV 170 (190)
T ss_dssp ECTTCSCCCSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred ECCcCCcccCCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99998752111111112221122 26788999999887
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.65 E-value=2.8e-16 Score=142.77 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.. ....++.+.... +.... .
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------~------------- 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDS-----------------S------------- 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETT-----------------E-------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECC-----------------E-------------
Confidence 34789999999999999999999987532 111122222111 11000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........+...+ ...+.|+++|+|
T Consensus 50 --~~~~~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 50 --PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp --EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred --EEEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 02488999999764 4556667789999999999998521111222333222 235789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+.. .......... ..+++.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 117 KVDLESEREVSSSEGRALAEEW-------GCPFMETSAKSKTMV 153 (167)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TSCEEEECTTCHHHH
T ss_pred CCcccccccCCHHHHHHHHHHh-------CCCEEEecCCCCcCH
Confidence 99986532211 1111111111 136788999888776
No 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=7.5e-16 Score=144.07 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|.......... ..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~----------------------~~--------- 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITK----------------------GN--------- 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEE----------------------TT---------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC---CccCCCCceeEEEEEe----------------------CC---------
Confidence 3578999999999999999999998753 2222333221110000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-C---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-G---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. . .+.|+++|+||
T Consensus 67 --~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 67 --VTIKLWDIGGQPR-----------FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp --EEEEEEEECCSHH-----------HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred --EEEEEEECCCCHh-----------HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEEC
Confidence 3589999999753 44556677899999999999985222222233444333 2 57899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+. .... .+.. ......+++.+||++|.|+
T Consensus 134 ~Dl~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 134 RDLPGALDEKEL-IEKM-NLSA-IQDREICCYSISCKEKDNI 172 (188)
T ss_dssp TTSTTCCCHHHH-HHHT-TGGG-CCSSCEEEEECCTTTCTTH
T ss_pred CCCccCCCHHHH-HHHh-Chhh-hccCCeeEEEEECCCCCCH
Confidence 999753211111 1111 1111 1223457889999999887
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.65 E-value=6.5e-16 Score=142.55 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. ...+.++.+.+.....-+ +.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~-------------- 55 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVD----------------GI-------------- 55 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEET----------------TE--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEEC----------------CE--------------
Confidence 4579999999999999999999998642 222222222222111000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+||
T Consensus 56 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (181)
T 2fn4_A 56 -PARLDILDTAGQEE-----------FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123 (181)
T ss_dssp -EEEEEEEECCCTTT-----------TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred -EEEEEEEECCCchh-----------hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 02488999999764 2233456678999999999998521112222333332 3457899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. ......... ...+++.+||++|.|+
T Consensus 124 ~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 124 ADLESQRQVPRSEASAFGAS-------HHVAYFEASAKLRLNV 159 (181)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECBTTTTBSH
T ss_pred cccccccccCHHHHHHHHHH-------cCCeEEEecCCCCCCH
Confidence 9997532211 111111111 1346788999998887
No 47
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=6.6e-16 Score=142.65 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=93.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|++...+.+...+++|++....... ++ +
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------------~~-----~---------- 51 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH-----------------ID-----G---------- 51 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE-----------------ET-----T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEE-----------------EC-----C----------
Confidence 468999999999999999999998754444455555444322111 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||+...... .. .. .......++..+|++++|+|+++ ..+.....++..+.+ .+.|+++|+||+|
T Consensus 52 -~~~~l~Dt~G~~~~~~~-~~-~~-~~~~~~~~~~~ad~~i~v~D~~~-~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 52 -MPLHIIDTAGLREASDE-VE-RI-GIERAWQEIEQADRVLFMVDGTT-TDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp -EEEEEEECCCCSCCSSH-HH-HH-HHHHHHHHHHTCSEEEEEEETTT-CCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred -eEEEEEECCCcccchhH-HH-HH-HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 34789999999752210 10 00 01123356789999999999986 333334455554442 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.... .. .......+++.+||++|.|+
T Consensus 127 l~~~~------------~~-~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 127 ITGET------------LG-MSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HHCCC------------CE-EEEETTEEEEECCTTTCTTH
T ss_pred CCcch------------hh-hhhccCCceEEEeCCCCCCH
Confidence 85321 00 00112357889999999987
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.65 E-value=5.3e-16 Score=144.78 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=93.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE----EEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF----IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~----~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+|.... ..+....... + ... .+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~---~----~~~-~~~--------- 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN---SKFITTVGIDFREKRVVYRANGPD---G----AVG-RGQ--------- 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEEEECTTSCC---C----SSC-CCE---------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC---cCcccccceeeeeEEEEEecCCcc---c----ccc-cCc---------
Confidence 44589999999999999999999998753 2222332211 1111111000 0 000 000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIR 205 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vi 205 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|++
T Consensus 69 ------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 69 ------RIHLQLWDTAGLER-----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131 (195)
T ss_dssp ------EEEEEEEEECCSGG-----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE
T ss_pred ------EEEEEEEeCCCcHH-----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 03589999999843 566677788999999999999852211222344444432 578999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+.... .+.........+ .+++.+||+++.|+
T Consensus 132 lv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 132 LCGNKSDLEDQRAVKEEEARELAEKYG-------IPYFETSAANGTNI 172 (195)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred EEEECcccccccccCHHHHHHHHHHcC-------CCEEEEECCCCCCH
Confidence 99999999753211 111111221122 36788999999887
No 49
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.64 E-value=7.2e-16 Score=145.75 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|.+|||||||+|+|++..+... ..+..+.+.. ..+.... . .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~-------- 56 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRND-----------------K----R-------- 56 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETT-----------------E----E--------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECC-----------------e----E--------
Confidence 457899999999999999999999875321 1111111111 1111000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 57 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 57 ---IKLQIWDTAGLER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp ---EEEEEEEECCSGG-----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred ---EEEEEEECCCchh-----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3489999999753 455667778999999999999852211222344444443 47899999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+........++ .+++.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 123 CDMEDERVVSSERGRQLADHLG-------FEFFEASAKDNINV 158 (203)
T ss_dssp TTCTTSCCSCHHHHHHHHHHHT-------CEEEECBTTTTBSS
T ss_pred cccCcccccCHHHHHHHHHHCC-------CeEEEEECCCCCCH
Confidence 999753211 011111111122 36788999999988
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.64 E-value=1.8e-16 Score=144.73 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=86.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+..+.+.......- . +.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~------~----------~~--------------- 50 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDI------N----------GK--------------- 50 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEES------S----------SC---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEE------C----------CE---------------
Confidence 4689999999999999999999987531 11111111111110000 0 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|
T Consensus 51 ~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 51 KVKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEEECCTTGGG-----------TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 02488999999653 22234556789999999999985211112234444443 24789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+.........+ .+++.+||++|.|+
T Consensus 120 l~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 120 METRVVTADQGEALAKELG-------IPFIESSAKNDDNV 152 (170)
T ss_dssp CTTCCSCHHHHHHHHHHHT-------CCEEECBTTTTBSH
T ss_pred CCcCccCHHHHHHHHHHcC-------CeEEEEECCCCCCH
Confidence 9532111111111111122 26788999998887
No 51
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=147.53 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=92.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +.... ..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~----------- 64 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDG-----------------KT----------- 64 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETT-----------------EE-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECC-----------------EE-----------
Confidence 345799999999999999999999987532 2222222222211 11110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 65 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 65 ----IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp ----EEEEEEEECCSGG-----------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEECCCcHh-----------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2489999999643 34456677899999999999985221122234444443 34789999999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...... ......... ..+++.+||++|.|+
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 130 KCDLTTKKVVDYTTAKEFADSL-------GIPFLETSAKNATNV 166 (196)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHT-------TCCEEEECTTTCTTH
T ss_pred CcccccccccCHHHHHHHHHHc-------CCcEEEEeCCCCCCH
Confidence 999976432111 111111112 236788999999887
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=147.29 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=91.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+|.. .+. .+..+. . .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~-----------------~----~----- 73 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD---SRTTIGVEFSTRTVMLGT-----------------A----A----- 73 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS---CCCCSSEEEEEEEEEETT-----------------E----E-----
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEEEECC-----------------E----E-----
Confidence 3457999999999999999999999876422 112211 111 111100 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
..+.+|||||+.. +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 74 ------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv 136 (193)
T 2oil_A 74 ------VKAQIWDTAGLER-----------YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136 (193)
T ss_dssp ------EEEEEEEESCCCT-----------TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEE
T ss_pred ------EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3489999999864 233456678999999999999852111222345555543 36889999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+....... ......... ...+++.+||++|.|+
T Consensus 137 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 137 GNKSDLSQAREVPTEEARMFAEN-------NGLLFLETSALDSTNV 175 (193)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred EECCCcccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9999997532111 111111111 1246788999999887
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.6e-16 Score=143.80 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=88.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+|..... ...... +.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~----------------~~-------------- 49 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE---SYIPTVEDTYRQVISCD----------------KS-------------- 49 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS---SCCCCSCEEEEEEEEET----------------TE--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccccEEEEEEEC----------------CE--------------
Confidence 4689999999999999999999977531 1222221111 100000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.+ .+.|+++|+|
T Consensus 50 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 50 -ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp -EEEEEEEECCSCSS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred -EEEEEEEECCCchh-----------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 02489999999764 455666778899999999999852111222334433332 3689999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++... ........ ..+.+.+||++|.|+
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 118 KCDESPSREVQSSEAEALARTW-------KCAFMETSAKLNHNV 154 (172)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ccccccccccCHHHHHHHHHHh-------CCeEEEecCCCCcCH
Confidence 9998754221111 11111111 236788999999887
No 54
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=4.1e-16 Score=146.41 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=92.1
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
..+...+|+|+|.+|+|||||+|+|++..+.. ...+.+..+.... +.... .
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~---------- 70 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGN-----------------E---------- 70 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSS-----------------S----------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCC-----------------E----------
Confidence 34456899999999999999999999987531 1222222111111 11000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 -----~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv 134 (192)
T 2fg5_A 71 -----LHKFLIWDTAGQER-----------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134 (192)
T ss_dssp -----EEEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEcCCCchh-----------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 03589999999653 344456678999999999999862222222344444443 37899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..+. .+........ ...+++.+||+++.|+
T Consensus 135 ~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 135 GNKCDLSDIREVPLKDAKEYAES-------IGAIVVETSAKNAINI 173 (192)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHT-------TTCEEEECBTTTTBSH
T ss_pred EECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCCcCH
Confidence 999999742211 1111222211 1247889999998887
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=144.59 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=92.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEE-EeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAV-MYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i-~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+. ...+.++.+.+... ..+. ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~~----------- 61 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------EE----------- 61 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETT-----------------EE-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECC-----------------EE-----------
Confidence 34589999999999999999999998752 22222222222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 62 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 126 (206)
T 2bov_A 62 ----VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126 (206)
T ss_dssp ----EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred ----EEEEEEcCCChhh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 2488999999764 45566778899999999999985221112233333333 2478999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..++ .+......... ..+++.+||++|.|+
T Consensus 127 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 127 NKSDLEDKRQVSVEEAKNRAEQW-------NVNYVETSAKTRANV 164 (206)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTH
T ss_pred eccCccccccccHHHHHHHHHHh-------CCeEEEEeCCCCCCH
Confidence 99999753211 11111111111 236788999999987
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.64 E-value=1.1e-15 Score=143.63 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=91.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE--EEeCCCccccCC------CCcccccccccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPF------SPLDKFGKFGNSFLNR 125 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~--i~~~~~~~~i~g------~~~~~~~~~g~~~~~~ 125 (551)
..++|+|+|.+|||||||+|+|++..+. ....+|... +.. +...... .... ..+..+...+......
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH---ENTNTTIGASFCTYVVNLNDIN-IKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC---CCcCccccceeEEEEEEecCcc-cccccccccccccccccccccccccc
Confidence 4579999999999999999999998753 222233322 111 1111100 0000 0000000000000000
Q ss_pred eeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcE
Q psy11743 126 FQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKI 204 (551)
Q Consensus 126 ~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~v 204 (551)
......+......+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi 150 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQER-----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII 150 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGG-----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred ccccccCccceeEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 011111111124689999999643 344566778999999999999862111222344444442 46899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|........+........ ...+++.+||++|.|+
T Consensus 151 ilv~NK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 151 ILVANKIDKNKFQVDILEVQKYAQD-------NNLLFIQTSAKTGTNI 191 (208)
T ss_dssp EEEEECTTCC-CCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred EEEEECCCcccccCCHHHHHHHHHH-------cCCcEEEEecCCCCCH
Confidence 9999999932111111111222211 1237889999999887
No 57
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.64 E-value=3.1e-16 Score=154.81 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=96.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|+|.... +...|+.|.+......... +
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~----------------------~---------- 51 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYK----------------------G---------- 51 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEET----------------------T----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEEC----------------------C----------
Confidence 478999999999999999999997742 3344555544433221110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+...... -......++ ..+|++++|+|+++ . .....+...+.+.+.|+++|+||+|+
T Consensus 52 -~~~~l~DtpG~~~~~~~~~-----~e~v~~~~~~~~~~d~ii~V~D~t~--~-~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 52 -YTINLIDLPGTYSLGYSSI-----DEKIARDYLLKGDADLVILVADSVN--P-EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp -EEEEEEECCCCSSCCSSSH-----HHHHHHHHHHHSCCSEEEEEEETTS--C-HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred -eEEEEEECCCcCccCCCCH-----HHHHHHHHHhhcCCCEEEEEeCCCc--h-hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 3589999999976322110 112334444 58999999999985 2 34445667777789999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
................++ .+++.+||++|.|+
T Consensus 123 ~~~~~i~~~~~~l~~~lg-------~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 123 AKKTGMKIDRYELQKHLG-------IPVVFTSSVTGEGL 154 (258)
T ss_dssp HHHTTCCBCHHHHHHHHC-------SCEEECCTTTCTTH
T ss_pred CCccchHHHHHHHHHHcC-------CCEEEEEeeCCcCH
Confidence 543211100111122222 37889999999987
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.64 E-value=7.9e-16 Score=142.74 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|+|||||+|+|++..+. ...+.++.+.... +.... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~------------ 64 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------E------------ 64 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETT-----------------E------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECC-----------------E------------
Confidence 34579999999999999999999998752 2222222222211 11100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 65 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 130 (187)
T 2a9k_A 65 ---EVQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130 (187)
T ss_dssp ---EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ---EEEEEEEECCCCcc-----------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 02488999999764 45566778899999999999985211112223333332 3478999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..+. .+......... ..+++.+||+++.|+
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 131 NKSDLEDKRQVSVEEAKNRAEQW-------NVNYVETSAKTRANV 168 (187)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred ECccccccCccCHHHHHHHHHHc-------CCeEEEeCCCCCCCH
Confidence 99998653211 11111111111 236788999999887
No 59
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.5e-15 Score=141.70 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. .. .||.... ..+. ++ +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~--~~t~~~~~~~~~------------------~~-----~-------- 59 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT--SPTIGSNVEEIV------------------IN-----N-------- 59 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE--ECCSCSSCEEEE------------------ET-----T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC--cCCCccceEEEE------------------EC-----C--------
Confidence 3578999999999999999999987652 11 1221100 0000 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+|
T Consensus 60 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 60 ---TRFLMWDIGGQES-----------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp ---EEEEEEECCC---------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 4589999999864 233345667899999999999863222333444444433 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+ .+..+ .....+++.+||++|.|+
T Consensus 126 K~Dl~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 126 KQDVKECMTVAE-ISQFL-KLTSI-KDHQWHIQACCALTGEGL 165 (187)
T ss_dssp CTTSTTCCCHHH-HHHHH-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred CCCCcCCCCHHH-HHHHh-Chhhh-cCCCcEEEEccCCCCcCH
Confidence 999976321111 11111 11111 223347889999999887
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.64 E-value=5.7e-16 Score=141.25 Aligned_cols=147 Identities=13% Similarity=0.180 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.... .+..+.+.. ..+.... . .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~----~-------- 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDD-----------------T----T-------- 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETT-----------------E----E--------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECC-----------------E----E--------
Confidence 3578999999999999999999998753211 111111111 1111100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||
T Consensus 55 ---~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 55 ---VKFEIWDTAGQER-----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp ---EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEeCCCcHH-----------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3489999999653 34456677899999999999985211122234444443 236789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... +........ ...+.+.+||++|.|+
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 121 ADLANKRAVDFQEAQSYADD-------NSLLFMETSAKTSMNV 156 (170)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCTTH
T ss_pred ccCccccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 9986432110 111111111 1246788999999887
No 61
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.64 E-value=2.7e-15 Score=141.33 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=90.6
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....++|+++|.+|||||||+|+|++........+...++.....-..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 64 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS-------------------------------- 64 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEEC--------------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeecc--------------------------------
Confidence 346789999999999999999999886432111111112111111000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHH---HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVL---EWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKI 204 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~---~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~v 204 (551)
..-...+.+|||||... +.... ..++..+|++++|+|+++ ........+..++. ..+.|+
T Consensus 65 ~~~~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~l~~~~~~~~~~pi 132 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMD-----------FFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNF 132 (196)
T ss_dssp CTTSCCEEEEECCSSCC-----------TTCTTCCHHHHHHTCSEEEEEEETTS-CCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCeeEEEEEECCCCHH-----------HHhhhhhcccccccCCEEEEEEECCC-chHHHHHHHHHHHHHHHhcCCCCcE
Confidence 00004589999999764 22222 566789999999999996 43344444444443 347899
Q ss_pred EEEEcCCCCCCHHHHH-------HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLM-------RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+.+.+... ......+..... .....+.+.+||++ .|+
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL--EKLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC--TTSCEEEEEECTTS-THH
T ss_pred EEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh--hcCCcceEEEEech-hhH
Confidence 9999999998753221 111111111110 12345778899988 776
No 62
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=4.8e-16 Score=147.87 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+ |.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~------------ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDIN-----------------GK------------ 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEET-----------------TE------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEEC-----------------CE------------
Confidence 456899999999999999999999987531 2222222222111 1110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 68 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 68 ---KVKLQLWDTAGQER-----------FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp ---EEEEEEECCTTGGG-----------GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred ---EEEEEEEeCCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 02489999999653 23334567789999999999985211112234444443 23689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.........+ .+++.+||++|.|+
T Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 134 KSDMETRVVTADQGEALAKELG-------IPFIESSAKNDDNV 169 (213)
T ss_dssp CTTCSSCCSCHHHHHHHHHHHT-------CCEEECBTTTTBSS
T ss_pred CCCCcccccCHHHHHHHHHHcC-------CEEEEEeCCCCCCH
Confidence 9999532111111111111122 26788999999988
No 63
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.64 E-value=6.2e-16 Score=143.63 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=89.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+.......+.+.. .+.. .+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~---~~~~-----------------------~~-------- 64 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE---EIVI-----------------------NN-------- 64 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE---EEEE-----------------------TT--------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE---EEEE-----------------------CC--------
Confidence 4568999999999999999999999875211111111110 0000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+|
T Consensus 65 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 65 ---TRFLMWDIGGQES-----------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp ---EEEEEEEESSSGG-----------GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEE
Confidence 3589999999854 222334556899999999999863222233344444332 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +.... .+... .....+++.+||++|.|+
T Consensus 131 K~Dl~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 131 KQDVKECMTVAE-ISQFL-KLTSI-KDHQWHIQACCALTGEGL 170 (181)
T ss_dssp CTTSTTCCCHHH-HHHHT-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred CCCcccCCCHHH-HHHHh-Ccccc-cCCceEEEEccCCCCcCH
Confidence 999976311111 11111 11111 222347889999999887
No 64
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.63 E-value=7.2e-15 Score=154.49 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=102.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCC-Cccc-cCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE-REGS-VPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~-~~~~-i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+..++|+++|.+|+|||||+|+|++...... .+...... ...... .... ......... ..+..
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---------- 70 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK---LGYAETNI-GVCESCKKPEAYVTEPSCKSC-GSDDE---------- 70 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEE-EECTTSCTTTTEESSSCCGGG-TCCSC----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc---cCccccce-eeccccccccceecccccccc-ccccc----------
Confidence 3568999999999999999999998653210 00000000 000000 0000 000000000 00000
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vilVlN 209 (551)
......+.+|||||+.+ +...+...+..+|++++|+|+.+ +. ..+..+++..+...+ +|+++|+|
T Consensus 71 -~~~~~~~~iiDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~-~~~~~qt~~~~~~~~~~~~~~iivviN 137 (403)
T 3sjy_A 71 -PKFLRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANE-PFPQPQTREHFVALGIIGVKNLIIVQN 137 (403)
T ss_dssp -CEEEEEEEEEECCCCGG-----------GHHHHHHHHTTCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred -ccccceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCCcHHHHHHHHHHHHcCCCCEEEEEE
Confidence 00014689999999753 67778888899999999999997 54 667677776666544 58999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.++..+.+......+.. ......+++++||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 138 KVDVVSKEEALSQYRQIKQFTKG-TWAENVPIIPVSALHKINI 179 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTT-STTTTCCEEECBTTTTBSH
T ss_pred CccccchHHHHHHHHHHHHHHHh-hCCCCCEEEEEECCCCcCh
Confidence 99999876544333322211211 1233568999999999887
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.63 E-value=4e-16 Score=142.18 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....+|. +.... +..+. .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT---KDYKKTIGVDFLERQIQVND-----------------E----------- 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC---CCSSCCCSSSEEEEEEEETT-----------------E-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCceEEEEEEEEEEECC-----------------E-----------
Confidence 3578999999999999999999998753 2222232 21111 10000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 53 ----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~n 117 (168)
T 1z2a_A 53 ----DVRLMLWDTAGQEE-----------FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQN 117 (168)
T ss_dssp ----EEEEEEECCTTGGG-----------TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEE
T ss_pred ----EEEEEEEcCCCcHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 03489999999653 223345667899999999999852211222334443332 4789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+.+.+||+++.|+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 118 KIDLLDDSCIKNEEAEGLAKRL-------KLRFYRTSVKEDLNV 154 (168)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHH-------TCEEEECBTTTTBSS
T ss_pred CcccCcccccCHHHHHHHHHHc-------CCeEEEEecCCCCCH
Confidence 9998753211 11111121112 236788999999888
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.63 E-value=4e-16 Score=143.70 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|+|||||+|+|++..+.. ...+|.. .......-+ +.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~----------------~~------------ 61 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN---TYQATIGIDFLSKTMYLE----------------DR------------ 61 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCCCSEEEEEEEEEET----------------TE------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeEEEEEEEEEC----------------Ce------------
Confidence 44789999999999999999999887532 2222322 211111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 62 ---~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (179)
T 2y8e_A 62 ---TVRLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127 (179)
T ss_dssp ---EEEEEEEEECCSGG-----------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ---EEEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999653 34445567789999999999985211122233443333 34789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+.. +......... ..+++.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 128 KTDLSDKRQVSTEEGERKAKEL-------NVMFIETSAKAGYNV 164 (179)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEEEBTTTTBSH
T ss_pred CCcccccCcCCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 99997532211 1111111111 236788999998887
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=147.91 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+ +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~------------ 73 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELR-----------------GK------------ 73 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEET-----------------TE------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEEC-----------------Ce------------
Confidence 445789999999999999999999887531 1122122222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 74 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~N 139 (192)
T 2il1_A 74 ---KIRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139 (192)
T ss_dssp ---EEEEEEEEECCSGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999643 55667778899999999999985211111233334333 34789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.......+.. .....+.+.+||++|.|+
T Consensus 140 K~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 140 KLDCETDREITRQQGEKFAQ-----QITGMRFCEASAKDNFNV 177 (192)
T ss_dssp CGGGGGGCCSCHHHHHHHHH-----TSTTCEEEECBTTTTBSH
T ss_pred CcccccccccCHHHHHHHHH-----hcCCCeEEEEeCCCCCCH
Confidence 99997532211111111111 112347788999999887
No 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=5.4e-16 Score=141.39 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=89.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+.++.+.... +..+. . .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~----~--------- 51 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINE-----------------H----T--------- 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETT-----------------E----E---------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECC-----------------E----E---------
Confidence 3689999999999999999999987532 1222222222111 11100 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 52 --~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 118 (170)
T 1ek0_A 52 --VKFEIWDTAGQER-----------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKI 118 (170)
T ss_dssp --EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred --EEEEEEECCCChh-----------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3489999999653 34456677899999999999985211222234444443 2478999999999
Q ss_pred CCCCH---HHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDH---QQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~---~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+. .++. +......... ..+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 119 DXLQEGGERKVAREEGEKLAEEK-------GLLFFETSAKTGENV 156 (170)
T ss_dssp GGGGSSCCCCSCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CccccccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 99743 1111 1111111111 236788999999887
No 69
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=144.06 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++...... ...+|......... ++ +
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~t~~~~~~~~~-----------------~~-----~-------- 66 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--NILPTIGFSIEKFK-----------------SS-----S-------- 66 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS--SCCCCSSEEEEEEE-----------------CS-----S--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC--CcCCccceeEEEEE-----------------EC-----C--------
Confidence 4568999999999999999999998873212 23334432211100 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH-HhC-----CCCcEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA-LRG-----HDDKIRIV 207 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~-l~~-----~~~~vilV 207 (551)
..+.+|||||... +......++.++|++++|+|+++.........++.. +.. .+.|+++|
T Consensus 67 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 67 ---LSFTVFDMSGQGR-----------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp ---CEEEEEEECCSTT-----------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 3589999999765 223334567899999999999852111222233333 333 47899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.......+ ..... .+..+ .....+++.+||++|.|+
T Consensus 133 ~nK~Dl~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 133 ANKMDLRDAVTSVK-VSQLL-CLENI-KDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EECTTSTTCCCHHH-HHHHH-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred EeCcCcccCCCHHH-HHHHh-Chhhc-cCCceEEEEccCCCCcCH
Confidence 99999975422111 11111 11111 123457889999999887
No 70
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.63 E-value=9.4e-16 Score=171.52 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=104.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcccc----CCCC-----cccc---------
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV----PFSP-----LDKF--------- 115 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i----~g~~-----~~~~--------- 115 (551)
...++|+|+|.+|+|||||+|+|+|.++. ++++.|+|..++.+.+++..... .|.. +..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~--~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLL--PSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCS--CCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 35689999999999999999999999864 55667788777777776532110 1100 0000
Q ss_pred -----ccccc--ccccceeEEecCCCCc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC
Q psy11743 116 -----GKFGN--SFLNRFQCSLVNSPVL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 187 (551)
Q Consensus 116 -----~~~g~--~~~~~~~~~~~~~~~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~ 187 (551)
...+. ...-....++.|.+++ ..+.||||||+.+.. .....+..++..+|++|+|+|+.+ +.+
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--------~~~~~~~~~i~~aD~vL~Vvda~~-~~s 215 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--------ARNELSLGYVNNCHAILFVMRASQ-PCT 215 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--------TCHHHHTHHHHSSSEEEEEEETTS-TTC
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--------hHHHHHHHHHHhCCEEEEEEeCCC-ccc
Confidence 00000 0011245567777777 589999999987521 134567778899999999999986 677
Q ss_pred hHHHHHHH-HHhCCCCcEEEEEcCCCCCCH
Q psy11743 188 DEFRRSIE-ALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 188 ~~~~~~l~-~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+...+. .+...+.|+++|+||+|+...
T Consensus 216 ~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 216 LGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 76665553 556668899999999999754
No 71
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=147.25 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+..+.+.... +.... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~------------ 56 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEING-----------------E------------ 56 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECC-----------------E------------
Confidence 34589999999999999999999998753 12222222222111 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 57 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK 122 (181)
T 3tw8_B 57 ---KVKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNK 122 (181)
T ss_dssp ---EEEEEEEEETTGGG-----------CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ---EEEEEEEcCCCchh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 02489999999653 122233456899999999999862111122334444432 35899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... .......... ..+++.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQM-------GIQLFETSAKENVNV 158 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHH-------TCCEEECBTTTTBSH
T ss_pred CCCchhcccCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 9986532111 1111111111 236788999999887
No 72
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.63 E-value=5.9e-15 Score=156.70 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=72.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-------hHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-------DEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +.. .+..+.+..+...+.| +++|+
T Consensus 95 ~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvvi 162 (439)
T 3j2k_7 95 KHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARK-GEFETGFEKGGQTREHAMLAKTAGVKHLIVLI 162 (439)
T ss_pred eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCCCchHHHHHHHHHHcCCCeEEEEe
Confidence 4699999999864 67777788899999999999996 443 4666777777777888 99999
Q ss_pred cCCCCCCH---H----HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDH---Q----QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~---~----~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+... + +..+.+...+..++.- .....+++++||++|.|+
T Consensus 163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~-~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 163 NKMDDPTVNWSNERYEECKEKLVPFLKKVGFN-PKKDIHFMPCSGLTGANL 212 (439)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHHhccc-ccCCeeEEEeeccCCccc
Confidence 99999642 1 1112222223233321 012457899999999998
No 73
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=2.9e-15 Score=149.20 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=88.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC------CCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP------EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~------~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+|+|.+|+|||||+|+|++.+...... + .+|+........ +...|
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~--------------~~~~~---------- 62 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVL--------------IKEGG---------- 62 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEE--------------ECC------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CCcccccCCceEEEEEEEE--------------EecCC----------
Confidence 4789999999999999999999988643221 1 122211110000 00000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHH-------HHHHhc-------------cCEEEEEEeCCCCCCChH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVL-------EWFAER-------------VDRIILLFDAHKLDISDE 189 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~-------~~~~~~-------------aD~il~VvDa~~~~~~~~ 189 (551)
....+.+|||||+.+.... ...+.... ..++.. +|++++++++...++...
T Consensus 63 -----~~~~l~liDTpG~~d~~~~----~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~ 133 (274)
T 3t5d_A 63 -----VQLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133 (274)
T ss_dssp -----CCEEEEEEECCCCSCCSCC----TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHH
T ss_pred -----eEEEEEEEECCCccccccc----hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHH
Confidence 0025899999999653221 11122222 334433 789999998775578888
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 190 FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 190 ~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..+++.+.. ++|+++|+||+|+....+...........+.. ...+++.+||.++.++
T Consensus 134 d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 134 DIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE----HKIKIYEFPETDDEEE 191 (274)
T ss_dssp HHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH----TTCCCCCC--------
T ss_pred HHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH----cCCeEEcCCCCCChhH
Confidence 8888988887 89999999999999876554322221111111 1224555788877766
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=143.61 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+.. ...+|..... ...... +.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~----------------~~------------- 54 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD---TYIPTIEDTYRQVISCD----------------KS------------- 54 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC---TTSCCCCEEEEEEEEET----------------TE-------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC---cccCccccceeEEEEEC----------------CE-------------
Confidence 45799999999999999999999977532 1222222111 100000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hC--CCCcEEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RG--HDDKIRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~--~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+ .. .+.|+++|+
T Consensus 55 --~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 55 --VCTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp --EEEEEEEECCGGGS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred --EEEEEEEeCCChHH-----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 03489999999654 4556667789999999999998521111112233323 22 367999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+......... ..+++.+||++|.|+
T Consensus 122 nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 122 NKCDETQREVDTREAQAVAQEW-------KCAFMETSAKMNYNV 158 (199)
T ss_dssp ECTTCSSCSSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ECccCCccccCHHHHHHHHHHh-------CCeEEEEecCCCCCH
Confidence 9999975321111111111111 136788999999887
No 75
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.63 E-value=7.7e-16 Score=140.97 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=87.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|++|||||||+|+|++.... ....|+.|.+....... ++ +
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~~-----~---------- 49 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFE-----------------YN-----G---------- 49 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEE-----------------ET-----T----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEE-----------------EC-----C----------
Confidence 468999999999999999999987642 22222223222211100 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+..-.... ........++ ..+|++++|+|+.+ . .....++..+.+.+.|+++|+||+|+
T Consensus 50 -~~l~i~Dt~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 50 -EKFKVVDLPGVYSLTANS-----IDEIIARDYIINEKPDLVVNIVDATA--L-ERNLYLTLQLMEMGANLLLALNKMDL 120 (165)
T ss_dssp -EEEEEEECCCCSCSSSSS-----HHHHHHHHHHHHHCCSEEEEEEETTC--H-HHHHHHHHHHHHTTCCEEEEEECHHH
T ss_pred -cEEEEEECCCcccCCCcc-----hhHHHHHHHHhcCCCCEEEEEecCCc--h-hHhHHHHHHHHhcCCCEEEEEEchHh
Confidence 348999999987522110 0122333344 48999999999974 1 23345566666678999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
................++ .+.+.+||++|.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~-------~~~~~~SA~~~~~v 152 (165)
T 2wji_A 121 AKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGI 152 (165)
T ss_dssp HHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSH
T ss_pred ccccChhhHHHHHHHHhC-------CCEEEEEcCCCCCH
Confidence 532111000111111122 35788999999887
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.63 E-value=9.8e-16 Score=142.63 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++... . ...||..... .+..+ +
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~~~~~-----------------------~-------- 61 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--D--TISPTLGFNIKTLEHR-----------------------G-------- 61 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--S--SCCCCSSEEEEEEEET-----------------------T--------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--C--cccccCccceEEEEEC-----------------------C--------
Confidence 468999999999999999999998772 1 2223333111 11110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 62 ---~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 62 ---FKLNIWDVGGQKS-----------LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp ---EEEEEEEECCSHH-----------HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 4589999999853 233344567899999999999862222222334443332 4789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. ...+ .+... .....+.+.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 128 KQDLPGALSCNAI-QEAL-ELDSI-RSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp CTTSTTCCCHHHH-HHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CccCCCCCCHHHH-HHHh-Chhhc-cCCceEEEEeeCCCCCCH
Confidence 9999764222111 1111 11111 223457889999999887
No 77
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.63 E-value=5.3e-16 Score=154.25 Aligned_cols=147 Identities=23% Similarity=0.246 Sum_probs=94.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|+|... .+...|+.|.+....... + +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~-----------------~------~---------- 48 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVK-----------------K------N---------- 48 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECT-----------------T------C----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEe-----------------c------C----------
Confidence 46899999999999999999999763 244445555554332110 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+-.... ........++. .+|++++|+|+++. .....+...+.+.+.|+++|+||+|+
T Consensus 49 -~~l~l~DtpG~~~~~~~~-----~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 49 -KDLEIQDLPGIYSMSPYS-----PEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGIPVTIALNMIDV 119 (272)
T ss_dssp -TTEEEEECCCCSCSSCSS-----HHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCSCEEEEEECHHH
T ss_pred -CeEEEEECCCcCccCCCC-----hHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCCCEEEEEEChhh
Confidence 459999999987632110 01223344443 69999999999851 33445556666678999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
............+...++ .+++.+||++|.|+
T Consensus 120 ~~~~~~~~~~~~l~~~lg-------~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHLG-------VPVVATSALKQTGV 151 (272)
T ss_dssp HHHTTCCCCHHHHHHHHT-------SCEEECBTTTTBSH
T ss_pred CCcCCcHHHHHHHHHHcC-------CCEEEEEccCCCCH
Confidence 543211000111111222 36889999999887
No 78
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.62 E-value=5e-15 Score=141.21 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. ...+ +++.....+..+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~-~~~~~~~~~~~~~~------------------------------- 51 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQT-SITDSSAIYKVNNN------------------------------- 51 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCC-CCSCEEEEEECSST-------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccC-CcceeeEEEEecCC-------------------------------
Confidence 4589999999999999999999998753 2222 23322222222110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH----Hh-----CCCCcE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEA----LR-----GHDDKI 204 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~----l~-----~~~~~v 204 (551)
-...+.+|||||... +.. ....++..+|++++|+|+.+ ........... +. ..+.|+
T Consensus 52 ~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pi 118 (214)
T 2fh5_B 52 RGNSLTLIDLPGHES-----------LRFQLLDRFKSSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSL 118 (214)
T ss_dssp TCCEEEEEECCCCHH-----------HHHHHHHHHGGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEE
T ss_pred CccEEEEEECCCChh-----------HHHHHHHHHHhhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCE
Confidence 003489999999853 444 45667899999999999974 22222222222 21 346899
Q ss_pred EEEEcCCCCCCH
Q psy11743 205 RIVLNKADMVDH 216 (551)
Q Consensus 205 ilVlNK~Dl~~~ 216 (551)
++|+||+|+...
T Consensus 119 ilv~nK~Dl~~~ 130 (214)
T 2fh5_B 119 LIACNKQDIAMA 130 (214)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCCCc
Confidence 999999999754
No 79
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=1.7e-15 Score=162.05 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=102.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+|+|.+|||||||+|+|++.+.+.+...|++|++.......- + +
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-----------------~-----g---------- 290 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-----------------R-----G---------- 290 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-----------------T-----T----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-----------------C-----C----------
Confidence 3789999999999999999999998766777777776654321110 0 0
Q ss_pred ccCeEEEeCCCCC-CCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGIL-SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~-~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+. ... +.++ .. -.+....++..+|++|+|+|+++ +.+.++.++++.+ .++|+++|+||+|+.
T Consensus 291 -~~~~l~DTaG~~~~~~-~~ve-~~-gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 291 -ILFRIVDTAGVRSETN-DLVE-RL-GIERTLQEIEKADIVLFVLDASS-PLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp -EEEEEEESSCCCSSCC-TTCC-CC-CHHHHHHHHHHCSEEEEEEETTS-CCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred -eEEEEEECCCccccch-hhHH-HH-HHHHHHHHhhcccEEEEEecCCC-CCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 348999999997 432 1111 11 12345667899999999999986 5666666776666 378999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+ +... .+ ...+++.+||++|.|+
T Consensus 364 ~~~~~~~-~~~~---~~-----~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 364 EKINEEE-IKNK---LG-----TDRHMVKISALKGEGL 392 (482)
T ss_dssp CCCCHHH-HHHH---HT-----CSTTEEEEEGGGTCCH
T ss_pred cccCHHH-HHHH---hc-----CCCcEEEEECCCCCCH
Confidence 5311111 1111 11 1246789999999988
No 80
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.62 E-value=2.1e-15 Score=140.28 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=91.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+... .||..... .+.. + +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~----~~t~g~~~~~~~~------------------~-----~-------- 59 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI----TPTQGFNIKSVQS------------------Q-----G-------- 59 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE----EEETTEEEEEEEE------------------T-----T--------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc----cCcCCeEEEEEEE------------------C-----C--------
Confidence 458999999999999999999998764211 11111000 0000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 60 ---~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 60 ---FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp ---EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3589999999753 45566778899999999999985222222233443332 24789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ ....+ .+... .....+.+.+||++|.|+
T Consensus 126 K~Dl~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 126 KQDLLTAAPASE-IAEGL-NLHTI-RDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp CTTSTTCCCHHH-HHHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CcCcccCCCHHH-HHHHh-Cchhc-cCCceEEEEccCCCCCCH
Confidence 999976422211 11111 11111 222346789999999987
No 81
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=4.2e-15 Score=138.46 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=90.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++..+. ....|+.|.+.... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~-~~------------------------------------ 43 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEI-EW------------------------------------ 43 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEE-EE------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEE-ec------------------------------------
Confidence 57999999999999999999998742 23333333222211 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH----HhccCEEEEEEeCCCC----------CCChHHHHHHHHHhCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF----AERVDRIILLFDAHKL----------DISDEFRRSIEALRGHDD 202 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~----~~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~~~~ 202 (551)
..+.++||||+.............+......+ ...+++++.|+|+... +....+.++...+...+.
T Consensus 44 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 44 KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 14899999997542211111111233333333 4456788888887631 111122234455556689
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 203 KIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 203 ~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+++|+||+|+..... +........++........+++.+||++|.|+
T Consensus 124 piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNVQ--EVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp CEEEEEECGGGCSCHH--HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred ceEEEeehHhccCcHH--HHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 9999999999987531 11222222233200000235788999999987
No 82
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.62 E-value=6.8e-16 Score=144.68 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+|+|++..+.... .+..+.+... .+..+. .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~-----------------~------------ 68 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDG-----------------K------------ 68 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECC-----------------E------------
Confidence 44579999999999999999999998753211 1111111111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 69 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 69 ---QIKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp ---EEEEEEECCTTGGG-----------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---EEEEEEEECCCchh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 02489999999653 22334566789999999999985221122234444443 24789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+ .+......... ..+++.+||+++.|+
T Consensus 135 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 135 KSDLESRRDVKREEGEAFAREH-------GLIFMETSAKTACNV 171 (191)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTH
T ss_pred CcccCCccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999643211 01111111111 236788999999887
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=3.7e-16 Score=146.47 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=93.4
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+.+..++|+|+|.+|||||||+|+|++..+... ..+..+.+......... +.
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~----------------~~----------- 70 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-FVSTVGIDFKVKTVYRH----------------EK----------- 70 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-EEEEETTTEEEEEEEET----------------TT-----------
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-cCCCeeeEEEEEEEEEC----------------CE-----------
Confidence 345668999999999999999999999875321 11111111111110000 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 71 ----~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 135 (191)
T 3dz8_A 71 ----RVKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135 (191)
T ss_dssp ----TEEEEEECHHHHHH-----------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----EEEEEEEeCCChHH-----------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 03489999999532 566677888999999999999852222223445555543 578999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....... +......... ..+.+.+||++|.|+
T Consensus 136 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 136 NKCDMEEERVVPTEKGQLLAEQL-------GFDFFEASAKENISV 173 (191)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ECCCCccccccCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 999986432111 1111111112 236788999999887
No 84
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=154.02 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhhcccchhhhccCCccCCCCCCcc-------ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC
Q psy11743 17 ETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDA-------DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE 89 (551)
Q Consensus 17 ~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~-------~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~ 89 (551)
+........+|...+..+.+...+....++..... .....++|+|+|.+|||||||+|+|++..+. . ..
T Consensus 119 ~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~--~~ 194 (329)
T 3o47_A 119 EKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV--T--TI 194 (329)
T ss_dssp HHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHHHHHHHTCSSCCE--E--EE
T ss_pred ccccchHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHHHHHHHHhCCCCC--C--cc
Confidence 45556677788888777776666555444432211 0123458999999999999999999987742 1 12
Q ss_pred CccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH
Q psy11743 90 PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169 (551)
Q Consensus 90 ~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
||.+........ .+ ..+.||||||... +......++
T Consensus 195 pT~~~~~~~~~~----------------------~~-----------~~l~i~Dt~G~~~-----------~~~~~~~~~ 230 (329)
T 3o47_A 195 PTIGFNVETVEY----------------------KN-----------ISFTVWDVGGQDK-----------IRPLWRHYF 230 (329)
T ss_dssp EETTEEEEEEEE----------------------TT-----------EEEEEEECC----------------CCSHHHHH
T ss_pred cccceEEEEEec----------------------Cc-----------EEEEEEECCCCHh-----------HHHHHHHHh
Confidence 343332211110 00 3489999999653 334456678
Q ss_pred hccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHccc-ccCCCCceEEEe
Q psy11743 170 ERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGK-VLQTPEVARVYI 244 (551)
Q Consensus 170 ~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~i 244 (551)
..+|++|+|+|+.+........ .+...+.. .+.|+++|+||+|+.+.....+. ... ++. .......+++.+
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i-~~~---~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI-TDK---LGLHSLRHRNWYIQAT 306 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH-HHH---HTCTTCCSSCEEEEEC
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHH-HHH---hchhhhhcCCCEEEEE
Confidence 8999999999998522222222 33334433 37899999999999864322221 111 222 112345578999
Q ss_pred cccCCCCC
Q psy11743 245 GSFWDQPL 252 (551)
Q Consensus 245 Sa~~g~~~ 252 (551)
||++|.|+
T Consensus 307 SAk~g~gi 314 (329)
T 3o47_A 307 CATSGDGL 314 (329)
T ss_dssp BTTTTBTH
T ss_pred ECCCCcCH
Confidence 99999887
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=142.26 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=86.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+.. ...+.+..+.. ..+... +. .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~----~------- 76 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVD-----------------GE----R------- 76 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEET-----------------TE----E-------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEEC-----------------CE----E-------
Confidence 456899999999999999999999987521 11111111111 011000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 77 ----~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 141 (199)
T 2p5s_A 77 ----TVLQLWDTAGQER-----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141 (199)
T ss_dssp ----EEEEEEECTTCTT-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEE
T ss_pred ----EEEEEEECCCCcc-----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2489999999754 45567778899999999999985221122234444443 24789999999
Q ss_pred CCCCCCHHH------H-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQ------L-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~------~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+..... + .+......... ..+++.+||++|.|+
T Consensus 142 K~Dl~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 142 KADIRDTAATEGQKCVPGHFGEKLAMTY-------GALFCETSAKDGSNI 184 (199)
T ss_dssp CGGGHHHHHHTTCCCCCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CcccccccccccccccCHHHHHHHHHHc-------CCeEEEeeCCCCCCH
Confidence 999863211 0 01111111111 236788999999887
No 86
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.61 E-value=1.6e-15 Score=139.62 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=88.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++..+. ....+|......... +. ++..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~-~~~~------------- 54 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKD--------------LE-VDGH------------- 54 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEE--------------EE-ETTE-------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEE--------------EE-ECCE-------------
Confidence 3578999999999999999999998752 122222221110000 00 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---C----CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---G----HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~----~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. . .+.|+++|
T Consensus 55 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 55 -FVTMQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp -EEEEEEEECCCCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred -EEEEEEEeCCCchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 02489999999643 45556667889999999999985211111123333332 1 56899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+...+...+........ ....+++.+||++|.|+
T Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 123 GNKIDISERQVSTEEAQAWCRD------NGDYPYFETSAKDATNV 161 (177)
T ss_dssp EECTTCSSCSSCHHHHHHHHHH------TTCCCEEECCTTTCTTH
T ss_pred EECCcccccccCHHHHHHHHHh------cCCceEEEEeCCCCCCH
Confidence 9999997321111111111111 12346788999999887
No 87
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.61 E-value=7e-16 Score=140.95 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-E-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-A-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|+|||||+|+|++..+. ....+|... +. . +..+. .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 53 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN---DKHITTLGASFLTKKLNIGG-----------------K----------- 53 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC---SSCCCCCSCEEEEEEEESSS-----------------C-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---cCCCCccceEEEEEEEEECC-----------------E-----------
Confidence 3578999999999999999999998753 122222221 11 1 11000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 54 ----~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 118 (170)
T 1z08_A 54 ----RVNLAIWDTAGQER-----------FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118 (170)
T ss_dssp ----EEEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred ----EEEEEEEECCCcHh-----------hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 02488999999754 22233345679999999999985221122233444433 2468999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+. +......... ..+.+.+||++|.|+
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 119 NKIDLEKERHVSIQEAESYAESV-------GAKHYHTSAKQNKGI 156 (170)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHT-------TCEEEEEBTTTTBSH
T ss_pred ECcccccccccCHHHHHHHHHHc-------CCeEEEecCCCCCCH
Confidence 999997532110 1111112111 236788999999887
No 88
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.61 E-value=2.8e-15 Score=139.05 Aligned_cols=146 Identities=13% Similarity=0.189 Sum_probs=88.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|+ +........+ +..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~~------------ 65 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV---DDYDPTIEDSYLKHTEID----------------NQW------------ 65 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEET----------------TEE------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCccceeEEEEEeC----------------CcE------------
Confidence 4579999999999999999999988652 2222232 2221111100 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+|
T Consensus 66 ---~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 66 ---AILDVLDTAGQEE-----------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp ---EEEEEEECCSCGG-----------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred ---EEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 2367899999653 3334556778999999999998521111122333332 346789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEeccc-CCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSF-WDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~-~g~~~ 252 (551)
|+|+.+...+. +.........+ .+.+.+||+ ++.|+
T Consensus 132 K~Dl~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 132 KVDLMHLRKVTRDQGKEMATKYN-------IPYIETSAKDPPLNV 169 (183)
T ss_dssp CTTCSTTCCSCHHHHHHHHHHHT-------CCEEEEBCSSSCBSH
T ss_pred CCCchhccCcCHHHHHHHHHHhC-------CeEEEeccCCCCCCH
Confidence 99987532111 11111111111 357889999 88887
No 89
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=148.79 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=88.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+. ....+|+. .+.....-. +. .
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~----~------- 71 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS---EGYDPTVENTYSKIVTLG----------------KD----E------- 71 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SCCCCCSEEEEEEEEC------------------------C-------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEC----------------CE----E-------
Confidence 34579999999999999999999998863 22222322 221111100 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVl 208 (551)
..+.+|||||.... ......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 72 ----~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 72 ----FHLHLVDTAGQDEY-----------SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp ----EEEEEEEECCCCTT-----------CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEE
T ss_pred ----EEEEEEECCCccch-----------HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34789999997652 12233456789999999999852222223445555543 368999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+.. ......... ..+++.+||++|.|+
T Consensus 137 nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 137 NKADLSPEREVQAVEGKKLAESW-------GATFMESSARENQLT 174 (201)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECCTTCHHHH
T ss_pred ECccCccccccCHHHHHHHHHHh-------CCeEEEEeCCCCCCH
Confidence 9999875322111 111111111 236788999988776
No 90
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.61 E-value=7.6e-16 Score=152.00 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC-CccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE-PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~-~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++.........+. .|.+....... +.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~------- 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS----------------------WGN------- 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE----------------------ETT-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE----------------------eCC-------
Confidence 346899999999999999999999988655445554 33333322111 111
Q ss_pred CCCccCeEEEeCCCCCCCccccccc-ccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDR-GYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~-~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vil 206 (551)
..+.||||||+.+.... ... ...+.+.+..++..+|++|+|+|+.. +......+...+.+. ..|+++
T Consensus 71 ----~~i~iiDTpG~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~ 143 (260)
T 2xtp_A 71 ----REIVIIDTPDMFSWKDH-CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIV 143 (260)
T ss_dssp ----EEEEEEECCGGGGSSCC-CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred ----CEEEEEECcCCCCCCCC-HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEE
Confidence 45899999998763221 110 01123444556789999999999984 666666666666543 568888
Q ss_pred EEc-CCCCCCH
Q psy11743 207 VLN-KADMVDH 216 (551)
Q Consensus 207 VlN-K~Dl~~~ 216 (551)
|+| |+|+...
T Consensus 144 vv~nK~Dl~~~ 154 (260)
T 2xtp_A 144 LFTHKEDLNGG 154 (260)
T ss_dssp EEECGGGGTTC
T ss_pred EEEcccccCCc
Confidence 888 9999853
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.61 E-value=3e-15 Score=140.49 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+.......+++. ..+..+ +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~---~~~~~~-----------------------~--------- 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS---EELAIG-----------------------N--------- 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE---EEEEET-----------------------T---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe---EEEEEC-----------------------C---------
Confidence 35799999999999999999999987642221221111 111110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.++||||.... ......++..+|++++|+|+++.........++..+.+ .+.|+++|+||
T Consensus 67 --~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 67 --IKFTTFDLGGHIQA-----------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp --EEEEEEECCCSGGG-----------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred --EEEEEEECCCCHHH-----------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 34899999998641 12223446799999999999862222222344444332 57899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc--------cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV--------LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ .... ++.. ......+.+.+||++|.|+
T Consensus 134 ~Dl~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 134 IDAPNAVSEAE-LRSA---LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTSTTCCCHHH-HHHH---TTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCCcCCCCHHH-HHHH---hCCccccccccccccceEEEEEeECCcCCCH
Confidence 99975211111 1111 2211 1223457889999999887
No 92
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.61 E-value=9.1e-16 Score=141.68 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++..+.. ...+..+.+....... +++.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~------------------------------~~~~ 55 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVT------------------------------VDGD 55 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEEC------------------------------CSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEE------------------------------EcCC
Confidence 45789999999999999999999987531 1122111122111000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-------CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-------HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-------~~~~vilV 207 (551)
-...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 56 ~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 56 KVATMQVWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp CCEEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred cEEEEEEEECCCChH-----------hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 013489999999654 333444566899999999999852211122333333321 57899999
Q ss_pred EcCCCCCCHHH-H-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQ-L-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~-~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+..... . .+...... . .....+++.+||++|.|+
T Consensus 125 ~nK~Dl~~~~~~v~~~~~~~~~-~-----~~~~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 125 GNKIDAEESKKIVSEKSAQELA-K-----SLGDIPLFLTSAKNAINV 165 (182)
T ss_dssp EECTTSCGGGCCSCHHHHHHHH-H-----HTTSCCEEEEBTTTTBSH
T ss_pred EECCccccccccCCHHHHHHHH-H-----hcCCCeEEEEecCCCCCH
Confidence 99999964321 0 11111111 1 012346788999999887
No 93
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.61 E-value=1.3e-15 Score=142.38 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=87.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+..+.+... .+..+. .
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDG-----------------E------------ 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETT-----------------E------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCcceEEEEEEEEECC-----------------E------------
Confidence 4557999999999999999999999875321 12211212111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilV 207 (551)
...+.+|||||... +. .....++..+|++++|+|+.+.........++..+. ..+.|+++|
T Consensus 68 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 133 (189)
T 1z06_A 68 ---RIKIQLWDTAGQER-----------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133 (189)
T ss_dssp ---EEEEEEEECCCSHH-----------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEE
T ss_pred ---EEEEEEEECCCchh-----------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 02489999999643 33 455677899999999999985211112223333332 457899999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
+||+|+.+..++. +......... ..+++.+||+++
T Consensus 134 ~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~ 169 (189)
T 1z06_A 134 GNKCDLRSAIQVPTDLAQKFADTH-------SMPLFETSAKNP 169 (189)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHT-------TCCEEECCSSSG
T ss_pred EECccccccceeCHHHHHHHHHHc-------CCEEEEEeCCcC
Confidence 9999996532211 1111111111 236788999988
No 94
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=8.6e-16 Score=164.19 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++.+...+...+++|++.......- .+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~----------------------~g--------- 280 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH----------------------DK--------- 280 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE----------------------TT---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----------------------CC---------
Confidence 34689999999999999999999998665666666665553221110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh----HHHHHHHHHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD----EFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~----~~~~~l~~l~~~~~~vilVlNK 210 (551)
..+.+|||||+.+... .++. . ..+....++..+|++++|+|+++ +.+. ....++..+. ++|+++|+||
T Consensus 281 --~~l~liDT~G~~~~~~-~ve~-~-gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l~--~~piIvV~NK 352 (476)
T 3gee_A 281 --TMFRLTDTAGLREAGE-EIEH-E-GIRRSRMKMAEADLILYLLDLGT-ERLDDELTEIRELKAAHP--AAKFLTVANK 352 (476)
T ss_dssp --EEEEEEC-----------------------CCCSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHCT--TSEEEEEEEC
T ss_pred --eEEEEEECCCCCcchh-HHHH-H-HHHHHHhhcccCCEEEEEEECCC-CcchhhhHHHHHHHHhcC--CCCEEEEEEC
Confidence 3489999999976221 1110 0 01233446789999999999996 5554 4455555554 6899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...... ..+...+ ..+++.+||++|.|+
T Consensus 353 ~Dl~~~~~~~~---~~l~~~~------~~~~i~vSAktg~GI 385 (476)
T 3gee_A 353 LDRAANADALI---RAIADGT------GTEVIGISALNGDGI 385 (476)
T ss_dssp TTSCTTTHHHH---HHHHHHH------TSCEEECBTTTTBSH
T ss_pred cCCCCccchhH---HHHHhcC------CCceEEEEECCCCCH
Confidence 99987544321 1121111 146789999999987
No 95
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.61 E-value=9.3e-16 Score=142.56 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=91.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+|.. .... +..+. .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------~---------- 57 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD---DSNHTIGVEFGSKIINVGG-----------------K---------- 57 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT---TCCCCSEEEEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCccceEEEEEEEEECC-----------------E----------
Confidence 345899999999999999999999987532 2222222 1111 10000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|
T Consensus 58 -----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 121 (186)
T 2bme_A 58 -----YVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 121 (186)
T ss_dssp -----EEEEEEEEECCSGG-----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEeCCCcHH-----------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 02489999999653 45566677899999999999985211111233443332 457899999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..... ......... ...+.+.+||++|.|+
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 122 GNKKDLDADREVTFLEASRFAQE-------NELMFLETSALTGENV 160 (186)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCTTH
T ss_pred EECcccccccccCHHHHHHHHHH-------cCCEEEEecCCCCCCH
Confidence 9999996432111 111111111 1247788999999887
No 96
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.60 E-value=2e-15 Score=162.12 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCC------CCCCCCccceEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGI------HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~------~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
+..++|+++|..|+|||||+|+|++.+.... ...++.|.+.. +..+. ..+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~----------------~~~~~------~~~-- 72 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIG----------------FSAFK------LEN-- 72 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------C----------------CCEEE------ETT--
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecc----------------eEEEE------ECC--
Confidence 4457999999999999999999998762100 01111111110 00000 011
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..+.+|||||+.+ +...+...+..+|++++|+|+.+ +...+..+.+..+...+.|.++|
T Consensus 73 ---------~~i~iiDtPGh~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 73 ---------YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp ---------EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEE
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEE
Confidence 4599999999743 67777888899999999999996 77788888888888888999999
Q ss_pred EcCCCCCCHHHHHHHH---HHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVY---GALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~---~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+.+...... ...+... .+....+++++||++|.|+
T Consensus 132 iNK~Dl~~~~~~~~~~~~l~~~l~~~---~~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 132 ITKSDNAGTEEIKRTEMIMKSILQST---HNLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp EECTTSSCHHHHHHHHHHHHHHHHHS---SSGGGCCEEECCTTTCTTH
T ss_pred EECCCcccchhHHHHHHHHHHHHhhh---cccccceEEEEECcCCCCH
Confidence 9999999754332222 2222111 0112457899999999887
No 97
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.60 E-value=8e-16 Score=140.57 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=80.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++....... .+.++.+.......-+ +. .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~---------------~ 50 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVD----------------KE---------------E 50 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEET----------------TE---------------E
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEEC----------------Ce---------------E
Confidence 58999999999999999999976643211 1112222211110000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
..+.++||||.... .. ....++..+|++++|+|+.+.........++..+.. .+.|+++|+||+
T Consensus 51 ~~~~i~D~~g~~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 51 VTLIVYDIWEQGDA-----------GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEECCCCC-------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCcccc-----------chhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 34789999998651 11 223456789999999999852111122333333332 378999999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... ......... ..+.+.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 120 DLARSREVSLEEGRHLAGTL-------SCKHIETSAALHHNT 154 (169)
T ss_dssp TCGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred chhhcccCCHHHHHHHHHHc-------CCcEEEecCccCCCH
Confidence 9874322111 111111111 236789999999887
No 98
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.60 E-value=9.3e-16 Score=145.42 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=89.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+... .+..+. ..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~-----------------~~----------- 56 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDG-----------------KT----------- 56 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETT-----------------EE-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECC-----------------EE-----------
Confidence 345799999999999999999999987532 112222222111 111100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||...- ......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 57 ----~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 121 (206)
T 2bcg_Y 57 ----VKLQIWDTAGQERF-----------RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121 (206)
T ss_dssp ----EEEEEECCTTTTTT-----------TCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEeCCChHHH-----------HHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 24899999997642 2223345689999999999985221122234444443 34689999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+. +......... ..+++.+||++|.|+
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 122 KCDLKDKRVVEYDVAKEFADAN-------KMPFLETSALDSTNV 158 (206)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHT-------TCCEEECCTTTCTTH
T ss_pred CCCCccccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 99997632111 1111111111 236788999999887
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.60 E-value=2.2e-15 Score=141.58 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=88.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. . ..||......... + ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~--~~~t~~~~~~~~~-----------------~-----~~-------- 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVE-----------------Y-----KN-------- 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE--E--EEEETTEEEEEEE-----------------E-----TT--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc--c--cCCcCceeEEEEE-----------------E-----CC--------
Confidence 34689999999999999999999987642 1 1233331111000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 73 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 73 ---ICFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp ---EEEEEEECC----------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence 3589999999864 233455677899999999999862222222344444332 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccc-ccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGK-VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ +... ++. .......+++.+||++|.|+
T Consensus 139 K~Dl~~~~~~~~-i~~~---~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 139 KQDMPNAMPVSE-LTDK---LGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp CTTSTTCCCHHH-HHHH---TTGGGCSSCCEEEEECBTTTTBTH
T ss_pred CCCCCCCCCHHH-HHHH---hCcccccCCceEEEECcCCCcCCH
Confidence 999976422111 1111 221 11223456889999998887
No 100
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.60 E-value=1.2e-15 Score=151.63 Aligned_cols=149 Identities=23% Similarity=0.191 Sum_probs=93.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|+|... .+...++.|.+....... +.+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~----------------------~~~--------- 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIME----------------------YRE--------- 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEE----------------------ETT---------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEE----------------------ECC---------
Confidence 457899999999999999999999864 233344444443322111 001
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~ 211 (551)
..+.+|||||+.+-..... -......++ .++|++++|+|+++. .....+...+.+.+ .|+++|+||+
T Consensus 50 --~~~~l~DtpG~~~~~~~~~-----~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~ 119 (271)
T 3k53_A 50 --KEFLVVDLPGIYSLTAHSI-----DELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNKF 119 (271)
T ss_dssp --EEEEEEECCCCSCCCSSCH-----HHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEECH
T ss_pred --ceEEEEeCCCccccccCCH-----HHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEECh
Confidence 3489999999976322110 112333444 789999999999862 33444555555566 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .+++.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~l~~~lg-------~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 120 DLLKKKGAKIDIKKMRKELG-------VPVIPTNAKKGEGV 153 (271)
T ss_dssp HHHHHHTCCCCHHHHHHHHS-------SCEEECBGGGTBTH
T ss_pred hcCcccccHHHHHHHHHHcC-------CcEEEEEeCCCCCH
Confidence 98643321111111222222 36889999998887
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.60 E-value=1.3e-15 Score=142.23 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+. . ..||..... .+... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~--~~~t~~~~~~~~~~~-----------------------~-------- 65 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--T--TVPTVGVNLETLQYK-----------------------N-------- 65 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--E--ECSSTTCCEEEEEET-----------------------T--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--C--cCCCCceEEEEEEEC-----------------------C--------
Confidence 4589999999999999999999877642 1 122322111 01000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.++||||...-.. ....++..+|++++|+|+++.........++..+ .. .+.|+++|+|
T Consensus 66 ---~~~~~~Dt~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 131 (189)
T 2x77_A 66 ---ISFEVWDLGGQTGVRP-----------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131 (189)
T ss_dssp ---EEEEEEEECCSSSSCC-----------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHhHHH-----------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEE
Confidence 4589999999865211 1223457899999999998632222223334333 32 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. .... ..... .....+++.+||+++.|+
T Consensus 132 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 132 KQDLPDAASEAEI-AEQL-GVSSI-MNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp CTTSTTCCCHHHH-HHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CCCCcCCCCHHHH-HHHh-Chhhc-cCCceEEEEccCCCccCH
Confidence 9999864221111 1111 11111 222347889999999887
No 102
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.60 E-value=9.4e-16 Score=145.62 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=90.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. .....++.+.......-+ +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~------------- 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVD----------------GK------------- 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-----------------C-------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEEC----------------CE-------------
Confidence 34689999999999999999999987752 112222222221111000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhCC--CCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~~--~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+... ..++..+... +.|+++|+|
T Consensus 77 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~n 142 (204)
T 4gzl_A 77 --PVNLGLWDTAGLED-----------YDRLRPLSYPQTDVFLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVGT 142 (204)
T ss_dssp --EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSCCEEEEEE
T ss_pred --EEEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 02367999999853 23333446789999999999985 222222 1345555443 789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.... ....+.. .....+++.+||++|.|+
T Consensus 143 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 143 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 192 (204)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhhccchhhhhhhhccccccccHHHHHHHHH--hcCCcEEEEeeCCCCCCH
Confidence 9999765432221110 0000000 122346889999999987
No 103
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.60 E-value=2.9e-15 Score=141.56 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+.......+++... +..+ +
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~---~~~~-----------------------~--------- 68 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE---LTIA-----------------------G--------- 68 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE---EEET-----------------------T---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEE---EEEC-----------------------C---------
Confidence 3578999999999999999999987753222122222111 1010 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.++||||...- ......++..+|++++|+|+.+.........++..+.+ .+.|+++|+||
T Consensus 69 --~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 135 (198)
T 1f6b_A 69 --MTFTTFDLGGHIQA-----------RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 135 (198)
T ss_dssp --EEEEEEEECC---------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEEC
T ss_pred --EEEEEEECCCcHhh-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEEC
Confidence 34899999997641 12233456799999999999852222222344444332 47899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHccc--------cc--CCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGK--------VL--QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~--------l~--~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ....+..... +. .....+++.+||++|.|+
T Consensus 136 ~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 136 IDRPEAISEER-LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp TTSTTCCCHHH-HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred CCccccCCHHH-HHHHhCcccccccccccccccccCceEEEEEEECCCCCCH
Confidence 99974211111 1111110000 00 113457889999999887
No 104
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.60 E-value=1.5e-15 Score=139.92 Aligned_cols=146 Identities=13% Similarity=0.199 Sum_probs=88.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....||. +.... +...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~------------------------------ 51 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG---KQYKQTIGLDFFLRRITLP------------------------------ 51 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT---HHHHHTTTSSEEEEEEEET------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC---CCCCCceeEEEEEEEEEeC------------------------------
Confidence 4578999999999999999999998752 1111222 11111 1110
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCc-EE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDK-IR 205 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~-vi 205 (551)
......+.++||||... +......++..+|++++|+|+++.........++..+.. ...| ++
T Consensus 52 -~~~~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ii 119 (178)
T 2hxs_A 52 -GNLNVTLQIWDIGGQTI-----------GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA 119 (178)
T ss_dssp -TTEEEEEEEEECTTCCT-----------TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEE
T ss_pred -CCCEEEEEEEECCCCcc-----------ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 00003489999999764 233455678999999999999852211122344444433 2456 78
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+...+ .+.........+ .+.+.+||++|.|+
T Consensus 120 lv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 120 LVGNKIDLEHMRTIKPEKHLRFCQENG-------FSSHFVSAKTGDSV 160 (178)
T ss_dssp EEEECGGGGGGCSSCHHHHHHHHHHHT-------CEEEEECTTTCTTH
T ss_pred EEEEccccccccccCHHHHHHHHHHcC-------CcEEEEeCCCCCCH
Confidence 99999999653211 011111111121 36788999999887
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-15 Score=141.55 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ... +|... ...+.+. +
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~-----------------------~-------- 61 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV--TTK--PTIGFNVETLSYK-----------------------N-------- 61 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE--EEC--SSTTCCEEEEEET-----------------------T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC--ccC--CcCccceEEEEEC-----------------------C--------
Confidence 4589999999999999999999976641 111 12111 0010000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||...- ......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 62 ---~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 62 ---LKLNVWDLGGQTSI-----------RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp ---EEEEEEEEC----C-----------CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEE
T ss_pred ---EEEEEEECCCCHhH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEE
Confidence 45899999998652 1122345679999999999986322233334444443 25789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ +... ++.. ......+++.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~-i~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 128 KQDQPGALSASE-VSKE---LNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp CTTSTTCCCHHH-HHHH---TTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred CCCCCCCCCHHH-HHHH---hCcccccCCceEEEEccCCCCcCH
Confidence 999976321111 1111 2211 1223347889999999887
No 106
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.5e-15 Score=144.12 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+|.. .... +..+. .
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~---------- 73 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEING-----------------E---------- 73 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECC-----------------E----------
Confidence 34579999999999999999999998753 22333322 2111 11100 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilV 207 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+. ..+.|+++|
T Consensus 74 -----~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv 137 (201)
T 2ew1_A 74 -----KVKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 137 (201)
T ss_dssp -----EEEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 02489999999643 45566677899999999999985211111234444443 346889999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..++. +......... ..+++.+||++|.|+
T Consensus 138 ~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 138 GNKIDLAERREVSQQRAEEFSEAQ-------DMYYLETSAKESDNV 176 (201)
T ss_dssp EECGGGGGGCSSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred EECCCCccccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999997432110 1111111111 236788999999987
No 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.59 E-value=1.2e-15 Score=144.39 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+..+.+.......-+ +.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----------------~~-------------- 55 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVD----------------DR-------------- 55 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESS----------------SC--------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEEC----------------CE--------------
Confidence 45789999999999999999999987531 112211222211111000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-------CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-------HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-------~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 56 -~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv 123 (207)
T 1vg8_A 56 -LVTMQIWDTAGQER-----------FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123 (207)
T ss_dssp -EEEEEEEEECSSGG-----------GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEE
T ss_pred -EEEEEEEeCCCcHH-----------HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 02489999999653 111223456789999999999852111112233333321 36899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+.....+........ ....+++.+||++|.|+
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 124 GNKIDLENRQVATKRAQAWCYS------KNNIPYFETSAKEAINV 162 (207)
T ss_dssp EECTTSSCCCSCHHHHHHHHHH------TTSCCEEECBTTTTBSH
T ss_pred EECCCCcccccCHHHHHHHHHh------cCCceEEEEeCCCCCCH
Confidence 9999997432111111111110 12346789999999887
No 108
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.8e-15 Score=140.58 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....-. +.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~------------- 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAVSVTVG----------------GK------------- 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEEEEESS----------------SC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEEC----------------CE-------------
Confidence 3469999999999999999999998652 2222232 2221111000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+........ .++..+... +.|+++|+||
T Consensus 65 --~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (194)
T 2atx_A 65 --QYLLGLYDTAGQED-----------YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131 (194)
T ss_dssp --EEEEEEECCCCSSS-----------STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEEC
T ss_pred --EEEEEEEECCCCcc-----------hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 02488999999865 2222334568899999999998521111222 455555543 7899999999
Q ss_pred CCCCCHHHHHH-------------HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-------------VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-------------~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+ ......... ...+.+.+||++|.|+
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~g~gi 180 (194)
T 2atx_A 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI------GACCYVECSALTQKGL 180 (194)
T ss_dssp TTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH------TCSCEEECCTTTCTTH
T ss_pred hhhcccccchhhcccccCcccCHHHHHHHHHHc------CCcEEEEeeCCCCCCH
Confidence 99986432111 011111111 1126788999999887
No 109
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=141.89 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|.. .... +..+. .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~---------- 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS---ERQGSTIGVDFTMKTLEIQG-----------------K---------- 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC---CCCCCCcceEEEEEEEEECC-----------------E----------
Confidence 34579999999999999999999998752 22223321 1111 10000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 77 -----~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv 140 (201)
T 2hup_A 77 -----RVKLQIWDTAGQER-----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140 (201)
T ss_dssp -----EEEEEEECCTTCGG-----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 02489999999753 566677888999999999999852211222344444442 56899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.....+ .+......... ...+++.+||++|.|+
T Consensus 141 ~NK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 141 GNKSDLSELREVSLAEAQSLAEHY------DILCAIETSAKDSSNV 180 (201)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHT------TCSEEEECBTTTTBSH
T ss_pred EECCccccccccCHHHHHHHHHHc------CCCEEEEEeCCCCCCH
Confidence 999999753111 01111111111 1226789999999887
No 110
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=1.2e-15 Score=160.37 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=98.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+|+|.+|+|||||+|+|++.++..+...+++|++.....+.-. +.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~----------------~~------------- 82 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH----------------PI------------- 82 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET----------------TT-------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC----------------CC-------------
Confidence 4568999999999999999999999887555555655655433221100 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... + +....+.+..++..+|++|+|+|+ +.......++..+.+.+.|+++|+||+|+
T Consensus 83 ---~~l~liDTpG~~d~~~--l--~~~~~~~~~~~l~~aD~vllVvD~---~~~~~~~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 83 ---GPVTLVDTPGLDDVGE--L--GRLRVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp ---EEEEEEECSSTTCCCT--T--CCCCHHHHHHHHTSCSEEEEECSS---SCCHHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred ---CeEEEEECcCCCcccc--h--hHHHHHHHHHHHhcCCEEEEEEeC---CChHHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence 2489999999986321 1 111244567788999999999998 45677788899998889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... + ....+.. ....+++.+||++|.|+
T Consensus 153 ~~~~~~-~----~~~~l~~---~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 153 LGEKAE-E----LKGLYES---RYEAKVLLVSALQKKGF 183 (423)
T ss_dssp TTCCCT-H----HHHHSSC---CTTCCCCCCSSCCTTST
T ss_pred CCccHH-H----HHHHHHH---HcCCCEEEEECCCCCCH
Confidence 865432 1 1111221 22346788999999988
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.58 E-value=1.3e-15 Score=141.36 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=88.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+. .... +... +.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------~~------------ 51 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVMVD-----------------GK------------ 51 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC---SSCCCCSCCEEEEEEEET-----------------TE------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC---CCcCCcccceeEEEEEEC-----------------CE------------
Confidence 3478999999999999999999987752 11122222 2111 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhCC--CCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRGH--DDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~~--~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... . .++..+... +.|+++|+
T Consensus 52 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~ 116 (186)
T 1mh1_A 52 ---PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVSLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVG 116 (186)
T ss_dssp ---EEEEEEECCCCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHSTTSCEEEEE
T ss_pred ---EEEEEEEECCCCHh-----------HHHHHHHhccCCcEEEEEEECCC-hhhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 02478999999854 22223345689999999999985 222222 1 355555432 78999999
Q ss_pred cCCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+.+.. ....+.. .....+++.+||++|.|+
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 167 (186)
T ss_dssp ECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred EcccccccchhhhhhcccccccCCHHHHHHHHH--hcCCcEEEEecCCCccCH
Confidence 99999764322111110 0000000 111237889999999887
No 112
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.58 E-value=1.2e-15 Score=143.29 Aligned_cols=146 Identities=20% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+.. +.....- . +..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~------~----------~~~------------ 70 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHVMKY------K----------NEE------------ 70 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEEE------T----------TEE------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC---CccCCeeeeeeEEEEEE------C----------CEE------------
Confidence 4579999999999999999999998752 222233222 1111000 0 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 71 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~n 135 (194)
T 3reg_A 71 ---FILHLWDTAGQEE-----------YDRLRPLSYADSDVVLLCFAVNN-RTSFDNISTKWEPEIKHYIDTAKTVLVGL 135 (194)
T ss_dssp ---EEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTSEEEEEEE
T ss_pred ---EEEEEEECCCcHH-----------HHHHhHhhccCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2378999999653 33334456789999999999985 222211 234444443 3689999999
Q ss_pred CCCCCCHH--HH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQ--QL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~--~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.. .. .+.........+. .+.+.+||++|.|+
T Consensus 136 K~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 136 KVDLRKDGSDDVTKQEGDDLCQKLGC------VAYIEASSVAKIGL 175 (194)
T ss_dssp CGGGCCTTTTCCCHHHHHHHHHHHTC------SCEEECBTTTTBSH
T ss_pred ChhhccCCCCcccHHHHHHHHHhcCC------CEEEEeecCCCCCH
Confidence 99997421 10 1111122222221 23788999999887
No 113
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=1.6e-14 Score=155.34 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=73.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCC-CcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHD-DKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~-~~vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+++ + ...+..+.+..+...+ .|+++|+
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~-g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST-NAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 4689999999954 67788888999999999999986 3 4466667777666666 4599999
Q ss_pred cCCCCCC--HHH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVD--HQQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~--~~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+ ... ..+.+...+..++. .....+++++||++|.|+
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~--~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGF--FEDNINWVPISGFSGEGV 225 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTC--CGGGEEEEECCSSSCTTS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCC--CcccceEEEEeeecCCCc
Confidence 9999986 222 12222333333343 223467899999999998
No 114
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.58 E-value=9.5e-15 Score=134.78 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=84.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. . .||... .. .+..+. .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~-----------------~------------ 52 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--L--EKTESEQYKKEMLVDG-----------------Q------------ 52 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--C--SSCSSSEEEEEEEETT-----------------E------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--c--CCCcceeEEEEEEECC-----------------E------------
Confidence 45789999999999999999999988642 1 223221 11 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH---HhC---CCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA---LRG---HDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~---l~~---~~~~vil 206 (551)
...+.++||||... ..++..+|++++|+|+.+.........++.+ +.. .+.|+++
T Consensus 53 ---~~~l~i~Dt~G~~~----------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 113 (178)
T 2iwr_A 53 ---THLVLIREEAGAPD----------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113 (178)
T ss_dssp ---EEEEEEEECSSSCC----------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEE
T ss_pred ---EEEEEEEECCCCch----------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 02478999999753 2345789999999999852211222333223 332 3689999
Q ss_pred EEcCCCCC-------CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMV-------DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~-------~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+. ..++.. ...... ...+.+.+||++|.|+
T Consensus 114 v~nK~Dl~~~~~~~v~~~~~~----~~~~~~------~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 114 VGTQDRISASSPRVVGDARAR----ALXADM------KRCSYYETXATYGLNV 156 (178)
T ss_dssp EEECTTCBTTBCCCSCHHHHH----HHHHHH------SSEEEEEEBTTTTBTH
T ss_pred EEECccccccccCcCCHHHHH----HHHHhh------cCCeEEEEeccccCCH
Confidence 99999983 122211 111111 1246788999999887
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=143.47 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+..+.+.... +..+. .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGG-----------------K------------ 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECC-----------------e------------
Confidence 3457999999999999999999998875321 111111111111 11100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 73 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 138 (200)
T 2o52_A 73 ---TVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138 (200)
T ss_dssp ---EEEEEEECCTTHHH-----------HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred ---eeEEEEEcCCCcHh-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999642 22334566789999999999985211112233444333 34789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+. ......... ...+.+.+||++|.|+
T Consensus 139 K~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 139 KKDLDPEREVTFLEASRFAQE-------NELMFLETSALTGENV 175 (200)
T ss_dssp CGGGGGGCCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred CCCcccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 99996432110 111111111 1246788999999887
No 116
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=148.30 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=77.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|+|.........+ ..|.+....... +.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~------- 77 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS----------------------WKE------- 77 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE----------------------ETT-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE----------------------eCC-------
Confidence 34589999999999999999999998863221111 222222211110 011
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilV 207 (551)
..+.+|||||+.+......+...++...+..+...+|++|+|+|+.. ++..+..++..+. ...+|+++|
T Consensus 78 ----~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~l~~~~~~~~~~~~~~~iiv 151 (239)
T 3lxx_A 78 ----TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR--YTEEEHKATEKILKMFGERARSFMILI 151 (239)
T ss_dssp ----EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC--CSSHHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred ----ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC--CCHHHHHHHHHHHHHhhhhccceEEEE
Confidence 45899999999864322111112244444455577899999999974 4455555555543 234689999
Q ss_pred EcCCCCCCHHHH
Q psy11743 208 LNKADMVDHQQL 219 (551)
Q Consensus 208 lNK~Dl~~~~~~ 219 (551)
+||+|+.....+
T Consensus 152 ~nK~D~~~~~~~ 163 (239)
T 3lxx_A 152 FTRKDDLGDTNL 163 (239)
T ss_dssp EECGGGC-----
T ss_pred EeCCccCCcccH
Confidence 999999876544
No 117
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.58 E-value=2e-15 Score=160.76 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++.+...+...+++|++....... +++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~----------------------~~g--------- 271 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV----------------------VGG--------- 271 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE----------------------ETT---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE----------------------ECC---------
Confidence 3468999999999999999999998876666666666554211000 001
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+.... ++. . ..+.....+..+|++++|+|+.+ +.+.....++..+.. +|+++|+||+|+.
T Consensus 272 --~~v~liDT~G~~~~~~~-ve~-~-gi~~~~~~~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 272 --IPVQVLDTAGIRETSDQ-VEK-I-GVERSRQAANTADLVLLTIDAAT-GWTTGDQEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp --EEEEECC-----------------------CCCCSCSEEEEEEETTT-CSCHHHHHHHHHHTT--SCEEEEEECTTSS
T ss_pred --EEEEEEECCccccchhH-HHH-H-HHHHHhhhhhcCCEEEEEeccCC-CCCHHHHHHHHhccC--CcEEEEEECCCCC
Confidence 34899999999653211 110 0 01223445688999999999996 777887778777764 7999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..... .+..+ ....+++.+||++|.|+
T Consensus 344 ~~~~~~--------~~~~~--~~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 344 EKQLIT--------SLEYP--ENITQIVHTAAAQKQGI 371 (462)
T ss_dssp CGGGST--------TCCCC--TTCCCEEEEBTTTTBSH
T ss_pred cchhhH--------HHHHh--ccCCcEEEEECCCCCCH
Confidence 754321 11111 13457889999999887
No 118
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2.6e-15 Score=142.74 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=87.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..++|+++|.+|||||||+|+|++..+.. ...+|+ +.+.. +... +.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~------------ 71 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE---VYVPTVFENYVADIEVD-----------------GK------------ 71 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEET-----------------TE------------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC---cCCCcccceEEEEEEEC-----------------CE------------
Confidence 34789999999999999999999987531 112222 22111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlN 209 (551)
...+.+|||||...- ......++..+|++++|+|+.+....... ..++..+.. .+.|+++|+|
T Consensus 72 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 137 (207)
T 2fv8_A 72 ---QVELALWDTAGQEDY-----------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVAN 137 (207)
T ss_dssp ---EEEEEEEECTTCTTC-----------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEE
T ss_pred ---EEEEEEEECCCcHHH-----------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 024889999997652 22233456889999999999852111111 344555543 3789999999
Q ss_pred CCCCCCHHHHHHHHHHH---------HHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGAL---------MWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+... ...+.. .....+++.+||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 138 KKDLRSDEHVRTELARMKQEPVRTDDGRAMAV--RIQAYDYLECSAKTKEGV 187 (207)
T ss_dssp CGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhhhccccchhhhhhcccCCCCHHHHHHHHH--hcCCCEEEEeeCCCCCCH
Confidence 99998654332211110 000000 111226788999999887
No 119
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.57 E-value=9.7e-15 Score=140.16 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=89.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+..++|+|+|.+|||||||++++++..+. ....||.. ......... +
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~---~~~~~Tig~d~~~k~~~~~------~---------------------- 59 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTMYLE------D---------------------- 59 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECS------S----------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCC---CCcCCccceEEEEEEEEec------c----------------------
Confidence 35679999999999999999999988753 22223321 111100000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVl 208 (551)
..-.+.||||+|... +......++..+|++++|+|..+.........++..+. ..+.|++||.
T Consensus 60 ---~~v~l~iwDtaGqe~-----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVg 125 (216)
T 4dkx_A 60 ---RTIRLQLWDTAGLER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 125 (216)
T ss_dssp ---CEEEEEEECCSCTTT-----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ---eEEEEEEEECCCchh-----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 002478999999865 45566778899999999999985222222234444443 3568999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.+.+.. .........+ .+.+.+||++|.|+
T Consensus 126 NK~Dl~~~r~V~~~e~~~~a~~~~-------~~~~e~SAktg~nV 163 (216)
T 4dkx_A 126 NKTDLADKRQVSIEEGERKAKELN-------VMFIETSAKAGYNV 163 (216)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHT-------CEEEEEBTTTTBSH
T ss_pred eccchHhcCcccHHHHhhHHHHhC-------CeeEEEeCCCCcCH
Confidence 9999965322111 1111111122 35678999999998
No 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.57 E-value=4.8e-15 Score=140.17 Aligned_cols=150 Identities=15% Similarity=0.201 Sum_probs=89.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|+. .+ ..+.... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~------------ 71 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYIADIEVDG-----------------K------------ 71 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS---SCCCSSCCCCEEEEEETT-----------------E------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc---ccCCcccceEEEEEEECC-----------------E------------
Confidence 34689999999999999999999987532 1222221 11 1111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+....... ..++..+... +.|+++|+|
T Consensus 72 ---~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 137 (201)
T 2gco_A 72 ---QVELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 137 (201)
T ss_dssp ---EEEEEEECCCCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEE
T ss_pred ---EEEEEEEECCCchh-----------HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 02488999999753 222233456899999999999852111111 3445555433 789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+.. ....+.. .....+.+.+||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 187 (201)
T 2gco_A 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN--RISAFGYLECSAKTKEGV 187 (201)
T ss_dssp CGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred cHHhhcCccchhhhcccccCcCCHHHHHHHHH--hCCCcEEEEeeCCCCCCH
Confidence 9999875432211100 0000000 112236788999999887
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=138.20 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++.... ....+..+.+.... +..+. .
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~------------ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDK-----------------E------------ 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETT-----------------E------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECC-----------------E------------
Confidence 45589999999999999999999876532 12222222222211 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilV 207 (551)
...+.++||||... +.. ....++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 ---~~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 136 (195)
T 3cbq_A 71 ---EVTLVVYDIWEQGD-----------AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136 (195)
T ss_dssp ---EEEEEEECCCCCSG-----------GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEE
T ss_pred ---EEEEEEEecCCCcc-----------chhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 02478999999864 121 344567899999999999852111222344444432 37899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+...+ .+......... ..+.+.+||++|.++
T Consensus 137 ~nK~Dl~~~~~v~~~~~~~~a~~~-------~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 137 GNKSDLARSREVSLEEGRHLAGTL-------SCKHIETSAALHHNT 175 (195)
T ss_dssp EECTTCTTTCCSCHHHHHHHHHHT-------TCEEEEEBTTTTBSH
T ss_pred eechhccccCCcCHHHHHHHHHHh-------CCEEEEEcCCCCCCH
Confidence 999999753211 11111111111 236788999999887
No 122
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.57 E-value=4.5e-15 Score=141.31 Aligned_cols=147 Identities=21% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....- . +.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~------~----------~~------------- 55 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVAV------D----------GQ------------- 55 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCSSCCCEEEEEEC------S----------SC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCccceeEEEEEEE------C----------CE-------------
Confidence 3478999999999999999999988752 1222232 222110000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+....... ..++..+... +.|+++|+||
T Consensus 56 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 122 (212)
T 2j0v_A 56 --IVNLGLWDTAGQED-----------YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122 (212)
T ss_dssp --EEEEEEECCCCCCC-----------CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEEC
T ss_pred --EEEEEEEECCCcHH-----------HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 02489999999865 222333457899999999999852111111 1455555432 7899999999
Q ss_pred CCCCCHHHH---------HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL---------MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~---------~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+........++ ..+.+.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~Sa~~g~gi 167 (212)
T 2j0v_A 123 LDLRDDKGYLADHTNVITSTQGEELRKQIG------AAAYIECSSKTQQNV 167 (212)
T ss_dssp HHHHTCHHHHHTCSSCCCHHHHHHHHHHHT------CSEEEECCTTTCTTH
T ss_pred HHhhhCccccccccCCCCHHHHHHHHHHcC------CceEEEccCCCCCCH
Confidence 999764331 111112221122 236788999999987
No 123
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.57 E-value=2.8e-14 Score=133.12 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=88.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|.+.+.. +..+ +..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~t~~~~~~~~~~~-----------------~~~----------- 66 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV---QEESPEGGRFKKEIVVD-----------------GQS----------- 66 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC---CCCCTTCEEEEEEEEET-----------------TEE-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCCcceEEEEEEEC-----------------CEE-----------
Confidence 45579999999999999999999998763 222334332211 1110 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC----CCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~----~~~~vilV 207 (551)
..+.+|||||... +. ++..+|++++|+|+.+ ..+.+. ..++..+.. .+.|+++|
T Consensus 67 ----~~l~i~Dt~G~~~-----------~~-----~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv 125 (184)
T 3ihw_A 67 ----YLLLIRDEGGPPE-----------LQ-----FAAWVDAVVFVFSLED-EISFQTVYNYFLRLCSFRNASEVPMVLV 125 (184)
T ss_dssp ----EEEEEEECSSSCC-----------HH-----HHHHCSEEEEEEETTC-HHHHHHHHHHHHHHHTTSCGGGSCEEEE
T ss_pred ----EEEEEEECCCChh-----------hh-----eecCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 2378899999864 22 5678999999999986 222222 456666654 36799999
Q ss_pred EcCCCCCCH--HHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDH--QQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+... ..+ .+.........+ ..+.+.+||++|.|+
T Consensus 126 ~nK~Dl~~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 126 GTQDAISAANPRVIDDSRARKLSTDLK------RCTYYETCATYGLNV 167 (184)
T ss_dssp EECTTCBTTBCCCSCHHHHHHHHHHTT------TCEEEEEBTTTTBTH
T ss_pred EECcccccccccccCHHHHHHHHHHcC------CCeEEEecCCCCCCH
Confidence 999998421 100 011111221121 246788999999887
No 124
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.57 E-value=2.1e-15 Score=142.62 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...+|+|+|.+|||||||+|+|++. .+. ....+|+. ... .+..+. ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~~-------- 70 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL---KDYAMTSGVEVVVAPVTIPD-----------------TT-------- 70 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTT-----------------SS--------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc---CCCCCccceEEEEEEEEECC-----------------cc--------
Confidence 3479999999999999999999988 431 12222322 110 111100 00
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCc
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDK 203 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~ 203 (551)
....+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|
T Consensus 71 -----~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 134 (208)
T 2yc2_C 71 -----VSVELFLLDTAGSDL-----------YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134 (208)
T ss_dssp -----EEEEEEEEETTTTHH-----------HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE
T ss_pred -----cEEEEEEEECCCcHH-----------HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 003489999999853 455566677899999999999852211233445555543 4789
Q ss_pred EEEEEcCCCCCC-HHHH-HHHHHHHHHHcccccCCCCceEEEecccC-CCCC
Q psy11743 204 IRIVLNKADMVD-HQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFW-DQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~-~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~-g~~~ 252 (551)
+++|+||+|+.+ ...+ .+........++ .+++.+||++ +.|+
T Consensus 135 iilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~gi 179 (208)
T 2yc2_C 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNT-------LDFFDVSANPPGKDA 179 (208)
T ss_dssp EEEEEECC-------CCCHHHHHHHHHHTT-------CEEEECCC-------
T ss_pred EEEEEECcccchhhccCCHHHHHHHHHHcC-------CEEEEeccCCCCcCH
Confidence 999999999976 3221 111122222222 4788999999 9888
No 125
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.57 E-value=2.3e-14 Score=134.03 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC----CccceEEEEEeCCCcc-ccCCCCcccccccccccccceeEE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE----PTTDRFIAVMYDEREG-SVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~----~tt~~~~~i~~~~~~~-~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...+|+|+|.+|||||||+|+|.+..... ..... +.........+..... .+.+ .
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~----- 72 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEG-RKGEMVSLATEDERTLFFDFLPLDIGEVKG--------------F----- 72 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGG-GBCCCEEEECSSCEEEEEEECCSSCCCSSS--------------C-----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccceeeeecccccccccC--------------C-----
Confidence 45799999999999999999888764311 00000 0011111111111000 0000 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH----HHHHHHHhC-----C
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF----RRSIEALRG-----H 200 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~----~~~l~~l~~-----~ 200 (551)
...+.++||||... +......++..+|++++|+|+.+ +...+. ..+..++.. .
T Consensus 73 ------~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~-~~~~~~~~s~~~l~~~l~~~~~~~~ 134 (198)
T 3t1o_A 73 ------KTRFHLYTVPGQVF-----------YNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLD 134 (198)
T ss_dssp ------EEEEEEEECCSCCS-----------CSHHHHHHTTTCCEEEEEEECCG-GGHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred ------ceEEEEEeCCChHH-----------HHHHHHHHHhcCCEEEEEEECCc-chhhHhHHHHHHHHHHHHhhccccC
Confidence 03489999999864 45566678899999999999984 322222 223333332 4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.|+++|+||+|+.+.....+ ..... . .....+.+.+||++|.|+
T Consensus 135 ~~piilv~NK~Dl~~~~~~~~-~~~~~---~---~~~~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 135 DVPIVIQVNKRDLPDALPVEM-VRAVV---D---PEGKFPVLEAVATEGKGV 179 (198)
T ss_dssp SSCEEEEEECTTSTTCCCHHH-HHHHH---C---TTCCSCEEECBGGGTBTH
T ss_pred CCCEEEEEEchhcccccCHHH-HHHHH---H---hcCCceEEEEecCCCcCH
Confidence 789999999999975321111 11111 1 112227789999999887
No 126
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.1e-14 Score=137.06 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|.. .... +.... . .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~----~------- 75 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW---EYDPTLESTYRHQATIDD-----------------E----V------- 75 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEETT-----------------E----E-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCCCCceEEEEEEECC-----------------E----E-------
Confidence 45799999999999999999999987532 1222222 1111 11100 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... ......++..+|++++|+|+++.........++..+. ..+.|+++|+
T Consensus 76 ----~~~~l~Dt~G~~~------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 139 (196)
T 2atv_A 76 ----VSMEILDTAGQED------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139 (196)
T ss_dssp ----EEEEEEECCCCCC------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred ----EEEEEEECCCCCc------------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 3488999999875 1234566789999999999985221112223333332 3578999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCC-CC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQ-PL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~-~~ 252 (551)
||+|+.+..++. +......... ..+.+.+||++|. |+
T Consensus 140 NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 140 NKADLDHSRQVSTEEGEKLATEL-------ACAFYECSACTGEGNI 178 (196)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHH-------TSEEEECCTTTCTTCH
T ss_pred ECcccccccccCHHHHHHHHHHh-------CCeEEEECCCcCCcCH
Confidence 999997532110 1111111111 2367889999998 77
No 127
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.6e-14 Score=159.13 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=73.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.. |...+...+..+|++|+|+|++. + ...+..+.+..+...+.+ +++|+
T Consensus 245 ~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVv 312 (611)
T 3izq_1 245 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST-NAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 312 (611)
T ss_dssp CEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSH-HHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCC-CcccccchhhhHHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999865 66677777899999999999985 2 345666777777766655 99999
Q ss_pred cCCCCCCH--HH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH--QQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~--~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+. .. ....+...+..++. .....+++++||++|.|+.
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~--~~~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGF--FEDNINWVPISGFSGEGVY 360 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTC--CGGGCEEEECCTTTCTTTS
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcc--cccCccEEeeecccCCCcc
Confidence 99999862 21 22223333434443 2234688999999999983
No 128
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.56 E-value=5.3e-16 Score=143.97 Aligned_cols=145 Identities=20% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....||..... .+..+. .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 55 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIELDG-----------------K----------- 55 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETT-----------------E-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEECC-----------------E-----------
Confidence 4578999999999999999999987642 12222222111 010000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 56 ----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (183)
T 2fu5_C 56 ----RIKLQIWDTAGQER-----------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120 (183)
T ss_dssp ----EEEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----EEEEEEEcCCCChh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 03489999999764 223334456899999999999852111222344444443 468999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+ .+.........+ .+++.+||++|.|+
T Consensus 121 nK~Dl~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 121 NKCDVNDKRQVSKERGEKLALDYG-------IKFMETSAKANINV 158 (183)
T ss_dssp EC--CCSCCCSCHHHHHHHHHHHT-------CEEEECCC---CCH
T ss_pred ECccCCccCcCCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99999753211 011111111121 36788999999887
No 129
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.5e-15 Score=146.28 Aligned_cols=147 Identities=11% Similarity=0.147 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|.+|||||||+|+|++..+... ..+..+.+... .+..+. .
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------- 60 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLEIEG-----------------K------------- 60 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETT-----------------E-------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECC-----------------E-------------
Confidence 447899999999999999999999876321 11111111111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++|+|+|+.+.........++..+.. .+.|+++|+||
T Consensus 61 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 127 (223)
T 3cpj_B 61 --RIKAQIWDTAGQER-----------YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127 (223)
T ss_dssp --EEEEEEECCTTTTT-----------TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_pred --EEEEEEEECCCccc-----------hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 02489999999764 122233456899999999999852211222344444442 36899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. +........ ...+++.+||+++.|+
T Consensus 128 ~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 128 SDLAHLRAVPTEESKTFAQE-------NQLLFTETSALNSENV 163 (223)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECCCC-CCCH
T ss_pred cccccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9997532111 111111111 1236788999999988
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=140.76 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|+ +.+..... +. +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~------~~----------~~~------------ 81 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQ------VK----------GKP------------ 81 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEE------ET----------TEE------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEE------EC----------CEE------------
Confidence 34789999999999999999999877521 112222 22111000 00 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 82 ---~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~n 146 (214)
T 2j1l_A 82 ---VHLHIWDTAGQDD-----------YDRLRPLFYPDASVLLLCFDVTS-PNSFDNIFNRWYPEVNHFCKKVPIIVVGC 146 (214)
T ss_dssp ---EEEEEEEC--------------------------CEEEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSCCEEEEEE
T ss_pred ---EEEEEEECCCchh-----------hhHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2488999999754 34445567789999999999985 221111 134444442 3689999999
Q ss_pred CCCCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.+. .....+.. .....+.+.+||++|.|+
T Consensus 147 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 147 KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR--SVGAVAYLECSARLHDNV 196 (214)
T ss_dssp CGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECBTTTTBSH
T ss_pred ChhhhccchhhhhhcccccCcccHHHHHHHHH--hcCCCEEEEecCCCCCCH
Confidence 999987543322110 00000111 112237789999999887
No 131
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.56 E-value=5e-15 Score=137.94 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..++|+++|.+|||||||+|+|++.... ....|+.|.+....... + .+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~-------- 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFE-----------------Y-----NG-------- 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEE-----------------E-----TT--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEE-----------------e-----CC--------
Confidence 34579999999999999999999987531 22233333332211110 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||........ ........++ ..+|++++|+|+.+ ......++..+...+.|+++|+||+
T Consensus 54 ---~~~~l~Dt~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piilv~nK~ 122 (188)
T 2wjg_A 54 ---EKFKVVDLPGVYSLTANS-----IDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLLALNKM 122 (188)
T ss_dssp ---EEEEEEECCCCSCCSSSS-----HHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEEEEECH
T ss_pred ---cEEEEEECCCcCcccccc-----HHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEEEEEhh
Confidence 348999999987532110 0112233333 35999999999974 2344566666777789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+..........++ .+.+.+||+++.++
T Consensus 123 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 123 DLAKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSH
T ss_pred hccccccchHHHHHHHHHhC-------CCeEEEEecCCCCH
Confidence 98543211111111111122 36788999988887
No 132
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.56 E-value=1.9e-15 Score=144.48 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=90.8
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.+...+|+|+|.+|||||||+|+|++..+. ....+|..... .+.+... ... + +.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~-~~~-~---------~~--------- 78 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFN---PKFITTVGIDFREKRVVYNAQ-GPN-G---------SS--------- 78 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCC---CEEEEEEEEEEEEEEEEEEC---------------------------
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCC---cCCCCceeEEEEEEEEEECCc-ccc-c---------cc---------
Confidence 345589999999999999999999987752 11222221100 0111000 000 0 00
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIR 205 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vi 205 (551)
.......+.||||||... +......++..+|++++|+|+.+.........++..+.. .+.|++
T Consensus 79 --~~~~~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 79 --GKAFKVHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145 (217)
T ss_dssp --CCEEEEEEEEEEEESHHH-----------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE
T ss_pred --cCceeEEEEEEECCCcHh-----------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 000013589999999542 566677888999999999999852111111233333332 468999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+...+ .+......... ..+++.+||+++.++
T Consensus 146 lV~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 146 LIGNKADLPDQREVNERQARELADKY-------GIPYFETSAATGQNV 186 (217)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHT-------TCCEEEEBTTTTBTH
T ss_pred EEEECCccccccccCHHHHHHHHHHC-------CCcEEEEECCCCCCH
Confidence 99999999753221 11111111111 236788999998887
No 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.56 E-value=6.2e-15 Score=144.56 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC-CccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE-PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~-~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+|+|+|.+.......+. +|.......... .+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~----------------------~~------- 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW----------------------DK------- 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE----------------------TT-------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE----------------------CC-------
Confidence 456799999999999999999999998765444443 333333222111 11
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHH----HhccCEEEEEEeCCCCCCChHHHHHHHHHhCC------CC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF----AERVDRIILLFDAHKLDISDEFRRSIEALRGH------DD 202 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~----~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~------~~ 202 (551)
..+.+|||||+.+.... .+.++...+..+ ...+|++|+|+|+.. ++..+..+++.+... +.
T Consensus 70 ----~~i~liDTPG~~~~~~~---~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 70 ----CHVEVVDTPDIFSSQVS---KTDPGCEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGEDVLKW 140 (247)
T ss_dssp ----EEEEEEECCSCSSTTHH---HHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGGGGGG
T ss_pred ----cEEEEEECCCCCCCCCC---cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChhhhcc
Confidence 45899999999764321 112233344433 399999999999984 677777777766643 68
Q ss_pred cEEEEEcCCCCCC
Q psy11743 203 KIRIVLNKADMVD 215 (551)
Q Consensus 203 ~vilVlNK~Dl~~ 215 (551)
|+++|.||+|+..
T Consensus 141 ~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 141 MVIVFTRKEDLAG 153 (247)
T ss_dssp EEEEEECGGGGTT
T ss_pred EEEEEEchHhcCC
Confidence 9999999999975
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.56 E-value=2.2e-15 Score=139.31 Aligned_cols=147 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|+|||||+|+|++..+. ....+|+... +.. ...+ .+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~---~~~~~t~~~~----~~~-~~~~----------~~~-------------- 54 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP---TDYVPTVFDN----FSA-NVVV----------NGA-------------- 54 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------CBC-CCC----------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCeeeee----EEE-EEEE----------CCE--------------
Confidence 4589999999999999999999988742 1112222110 000 0000 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+... . .++..+.. .+.|+++|+||
T Consensus 55 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (182)
T 3bwd_D 55 -TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIVLVGTK 121 (182)
T ss_dssp ----CEEECCCC-CT-----------TTTTGGGGGTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCCEEEEEEC
T ss_pred -EEEEEEEECCCChh-----------hhhhHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 03477999999764 22233445688999999999985 222221 1 35555543 37899999999
Q ss_pred CCCCCHHHH-----------HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-----------MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-----------~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+.........+ ..+.+.+||++|.|+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi 168 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------APAYIECSSKSQENV 168 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT------CSEEEECCTTTCTTH
T ss_pred hhhhcCcccccccccCCCCCHHHHHHHHHHcC------CCEEEEEECCCCCCH
Confidence 999764432 111111111111 236788999999887
No 135
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.56 E-value=1.3e-14 Score=147.00 Aligned_cols=154 Identities=17% Similarity=0.116 Sum_probs=94.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++.........+++|.+.......-. + .
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~----------------~-----~---------- 51 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL----------------G-----N---------- 51 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET----------------T-----T----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC----------------C-----c----------
Confidence 46899999999999999999999854434456777766543311100 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHH---h--CCCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEAL---R--GHDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l---~--~~~~~vilVlN 209 (551)
..+.+|||||...-.. . .+......++.++|++++|+|+.+ ..+... ..+..++ . ..+.|+++|+|
T Consensus 52 -~~l~i~Dt~G~~~~~~-----~-~~~~~~~~~~~~ad~vi~V~D~t~-~~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 52 -MTLNLWDCGGQDVFME-----N-YFTKQKDHIFQMVQVLIHVFDVES-TEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp -EEEEEEEECCSHHHHH-----H-HHTTTHHHHHTTCSEEEEEEETTC-SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred -eEEEEEECCCcHHHhh-----h-hhhhHHHHHhccCCEEEEEEECCC-hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3589999999753100 0 002345667789999999999986 332222 2333333 2 23789999999
Q ss_pred CCCCCCHHHHH---HHHHHHHHHcccccCCCCceEEEecccC
Q psy11743 210 KADMVDHQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFW 248 (551)
Q Consensus 210 K~Dl~~~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~ 248 (551)
|+|+.+.+... .........+....+.+..+.+.+||++
T Consensus 124 K~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 99999743221 0111111112221133346788999976
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=4e-14 Score=146.40 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=93.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++... .+...+.+|.+....... .+ +
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~-----------------~~-----~--------- 213 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFE-----------------DG-----Y--------- 213 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEE-----------------ET-----T---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEE-----------------ec-----C---------
Confidence 457999999999999999999999763 122233334333211100 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChH-HHHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDE-FRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~-~~~~l~~l~~--~~~~vilVlNK 210 (551)
..+.++||||+.+......+.. ....+......+|++++|+|++... ++.. ...++..+.. .++|+++|+||
T Consensus 214 --~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 214 --FRYQIIDTPGLLDRPISERNEI--EKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp --EEEEEEECTTTSSSCSTTSCHH--HHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred --ceEEEEeCCCccccchhhhhHH--HHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3489999999976321111110 0122223345799999999987422 2322 2455555543 27999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....++.+. ...... ...+++++||++|.|+
T Consensus 290 ~Dl~~~~~~~~~-~~~~~~-------~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 290 IDVADEENIKRL-EKFVKE-------KGLNPIKISALKGTGI 323 (357)
T ss_dssp TTTCCHHHHHHH-HHHHHH-------TTCCCEECBTTTTBTH
T ss_pred cccCChHHHHHH-HHHHHh-------cCCCeEEEeCCCCcCH
Confidence 999986554222 111111 2246789999999988
No 137
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=5.7e-14 Score=149.06 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=72.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+. ++++|+||+|+.+
T Consensus 104 ~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 4589999999754 56667778899999999999996 677777777777666665 5899999999986
Q ss_pred --HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 --HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 --~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.. .+.+......++. .....+++++||++|.|+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~--~~~~~~~i~vSA~~g~gi 211 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAF--KPTTMAFVPMSALKGDNV 211 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTC--CCSEEEEEECCTTTCTTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CccCceEEEEeccCCCCc
Confidence 2222 1222222222221 123467899999999998
No 138
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.54 E-value=8.7e-15 Score=138.02 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....-+ +.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~------------ 66 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP---TEYIPTAFDNFSAVVSVD----------------GR------------ 66 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEET----------------TE------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEC----------------CE------------
Confidence 45689999999999999999999987742 1222333 2221111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVl 208 (551)
...+.+|||||...- ......++.++|++++|+|+.+ ..+... . .++..+.. .+.|+++|+
T Consensus 67 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 131 (201)
T 2q3h_A 67 ---PVRLQLCDTAGQDEF-----------DKLRPLCYTNTDIFLLCFSVVS-PSSFQNVSEKWVPEIRCHCPKAPIILVG 131 (201)
T ss_dssp ---EEEEEEEECCCSTTC-----------SSSGGGGGTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSSCEEEEE
T ss_pred ---EEEEEEEECCCCHHH-----------HHHhHhhcCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 023779999998652 1122345689999999999985 222222 1 34444443 378999999
Q ss_pred cCCCCCCHHHHH-------------HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-------------RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..... +........+ ...+.+.+||++|.|+
T Consensus 132 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 132 TQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI------KAASYIECSALTQKNL 182 (201)
T ss_dssp ECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH------TCSEEEECCTTTCTTH
T ss_pred ECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc------CCcEEEEEecCCCCCH
Confidence 999997532110 0011111111 1236788999999887
No 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=8.6e-15 Score=140.01 Aligned_cols=114 Identities=18% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++..+........+++... + ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~-------- 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----------------------Y-----DG-------- 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT----------------------G-----GG--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE----------------------e-----eC--------
Confidence 356899999999999999999999987532211222221100 1 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhc----cCEEEEEEeCC-CCCCChHHHHHHHHH-h------CCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER----VDRIILLFDAH-KLDISDEFRRSIEAL-R------GHD 201 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~----aD~il~VvDa~-~~~~~~~~~~~l~~l-~------~~~ 201 (551)
..+.++||||+.. +......++.. +|++++|+|+. ..........++..+ . ..+
T Consensus 55 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (218)
T 1nrj_B 55 ---SGVTLVDFPGHVK-----------LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120 (218)
T ss_dssp ---SSCEEEECCCCGG-----------GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred ---ceEEEEECCCcHH-----------HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC
Confidence 4589999999864 23334444444 99999999998 423333333333332 2 257
Q ss_pred CcEEEEEcCCCCCCH
Q psy11743 202 DKIRIVLNKADMVDH 216 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~ 216 (551)
.|+++|+||+|+.+.
T Consensus 121 ~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 121 IDILIACNKSELFTA 135 (218)
T ss_dssp CCEEEEEECTTSTTC
T ss_pred CCEEEEEEchHhccc
Confidence 899999999999864
No 140
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.54 E-value=3e-15 Score=151.67 Aligned_cols=186 Identities=18% Similarity=0.136 Sum_probs=117.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEec-CCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+..|+++|.||||||||+|+|++..+ ..++..++||+.. ....+ +.++.++||||+.++.. .. ..+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~---~l~~~~~ 83 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SD---VLGHSMV 83 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TC---HHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-ch---hHHHHHH
Confidence 45899999999999999999999984 5688999999732 24456 88899999999987652 22 2333344
Q ss_pred hhhhhhccccCcc-------ccc----------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVL-------KGK----------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~----------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
..+...+..+|++ .+. .+....++.++|+||+|+.-. ........+.+.+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-----------~~~~~~~~~~l~~~~ 152 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKH 152 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-----------GGGGHHHHHHHHHHC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-----------HHHHHHHHHHHHHhc
Confidence 4444555555542 121 122245778999999998211 111111233333333
Q ss_pred Hhccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhc
Q psy11743 445 RKDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQ 521 (551)
Q Consensus 445 ~~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (551)
..+.+++.+ ++|.+ +++++.+.+ ..++.+ .+++.+.+
T Consensus 153 ~~~~~i~~vSA~~g~gv~~L~~~l~~-------------------------------~l~~~~----~~~~~~~~----- 192 (308)
T 3iev_A 153 PELTEIVPISALKGANLDELVKTILK-------------------------------YLPEGE----PLFPEDMI----- 192 (308)
T ss_dssp TTCCCEEECBTTTTBSHHHHHHHHHH-------------------------------HSCBCC----CSSCTTCC-----
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHH-------------------------------hCccCC----CCCCcccc-----
Confidence 222333333 44555 555444433 112221 34455555
Q ss_pred cCCCCCCCccchHHHHHHHHHhHhhhhh
Q psy11743 522 HHDFTKFQTLRPRLIEVADKMLAEDIAH 549 (551)
Q Consensus 522 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (551)
+|.+.++.+.+.++|++.+.+.+|||.
T Consensus 193 -td~~~~~~~~e~irek~~~~~~~eiP~ 219 (308)
T 3iev_A 193 -TDLPLRLLAAEIVREKAMMLTREEVPT 219 (308)
T ss_dssp -BCCCHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred -cCCCHHHHHHHHHHHHHHhhhhhhcCC
Confidence 888888889999999999999999996
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.54 E-value=7.4e-15 Score=150.46 Aligned_cols=152 Identities=22% Similarity=0.238 Sum_probs=94.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.|+|+|.+|||||||+|+|++.+.. +...+.+|.+....+.. ++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~------------------------------~~~~- 205 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVE------------------------------TDDG- 205 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEE------------------------------CSSS-
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEE------------------------------eCCC-
Confidence 467999999999999999999987632 23334444333322111 0100
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIV 207 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilV 207 (551)
..+.++||||+.+.... ...+.......++++|++|+|+|+++. ........+...+.. ..+|+++|
T Consensus 206 -~~~~l~DtPG~i~~a~~----~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 206 -RSFVMADLPGLIEGAHQ----GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp -CEEEEEEHHHHHHHTTC----TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred -ceEEEecCCCCcccccc----cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence 34899999997542111 111333444556889999999999741 222233445555553 47899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+....+..+.+ ...+.. ..+++.+||+++.++
T Consensus 281 ~NK~Dl~~~~e~~~~l---~~~l~~-----~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 281 ANKMDMPEAAENLEAF---KEKLTD-----DYPVFPISAVTREGL 317 (342)
T ss_dssp EECTTSTTHHHHHHHH---HHHCCS-----CCCBCCCSSCCSSTT
T ss_pred EECccCCCCHHHHHHH---HHHhhc-----CCCEEEEECCCCcCH
Confidence 9999998754322221 112221 135678999999988
No 142
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=136.40 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=85.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|+.. +.. +... +.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------~~------------ 67 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI---SEYDPNLEDTYSSEETVD-----------------HQ------------ 67 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEET-----------------TE------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC---cccCCCccceeeEEEEEC-----------------CE------------
Confidence 4579999999999999999999998752 222233222 111 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vil 206 (551)
...+.+|||||.... .. +..++..+|++++|+|+.+.........++..+.. .+.|+++
T Consensus 68 ---~~~l~i~Dt~G~~~~-----------~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 132 (187)
T 3c5c_A 68 ---PVHLRVMDTADLDTP-----------RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132 (187)
T ss_dssp ---EEEEEEEECCC---C-----------CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---EEEEEEEECCCCCcc-----------hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 024889999997641 11 13467899999999999852211222334444432 4789999
Q ss_pred EEcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecc-cCCCCC
Q psy11743 207 VLNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGS-FWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa-~~g~~~ 252 (551)
|+||+|+.....+. +........++ .+.+.+|| ++|.|+
T Consensus 133 v~nK~Dl~~~~~v~~~~~~~~~~~~~-------~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 133 LGNKLDMAQYRQVTKAEGVALAGRFG-------CLFFEVSACLDFEHV 173 (187)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHT-------CEEEECCSSSCSHHH
T ss_pred EEECcchhhcCccCHHHHHHHHHHcC-------CcEEEEeecCccccH
Confidence 99999996432110 11111111122 36788999 788877
No 143
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.53 E-value=2.1e-14 Score=155.15 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=93.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++.++. . ..||.+......... +
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~--~~~T~~~~~~~~~~~----------------------~--------- 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--T--TIPTVGFNVETVTYK----------------------N--------- 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--C--CCCCSSEEEEEEESS----------------------S---------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--C--cCCccceeEEEEEeC----------------------C---------
Confidence 3478999999999999999999998842 2 233544332211110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.+|||||... +......++.++|++|+|+|+.+.........++..+.+ .++|+++|+||
T Consensus 366 --~~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK 432 (497)
T 3lvq_E 366 --VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 432 (497)
T ss_dssp --CEEEEEEECCCGG-----------GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred --EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEEC
Confidence 3489999999654 333345567899999999999862212222233333322 47899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHccc-ccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGK-VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+. .. .++. .......+++.+||++|.|+
T Consensus 433 ~Dl~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 433 QDLPDAMKPHEI-QE---KLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp CSSSSCCCHHHH-HH---HTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred CCCCcCCCHHHH-HH---HhchhhhhcCCeEEEEEECCCCCCH
Confidence 999753221111 11 1222 11234457899999999988
No 144
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.53 E-value=1.6e-14 Score=138.16 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=74.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|... +.....- .+ .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~---~~~~~t~~~~~~~~~~~------~~----------~------------ 73 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVPTVFENYTACLET------EE----------Q------------ 73 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEEC------------------C------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC---CCcCCeeeeeEEEEEEE------CC----------E------------
Confidence 45689999999999999999999998753 222223222 1110000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhC--CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRG--HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~--~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+.. ...++..+.. .+.|+++|+
T Consensus 74 ---~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~ 138 (214)
T 3q3j_B 74 ---RVELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISR-PETVDSALKKWRTEILDYCPSTRVLLIG 138 (214)
T ss_dssp ---EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-THHHHHHHTHHHHHHHHHCTTSEEEEEE
T ss_pred ---EEEEEEEECCCCHh-----------HHHHHHHHcCCCeEEEEEEECcC-HHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 03488999999753 23333445689999999999986 22222 2345555543 378999999
Q ss_pred cCCCCCC
Q psy11743 209 NKADMVD 215 (551)
Q Consensus 209 NK~Dl~~ 215 (551)
||+|+.+
T Consensus 139 nK~Dl~~ 145 (214)
T 3q3j_B 139 CKTDLRT 145 (214)
T ss_dssp ECGGGGG
T ss_pred EChhhcc
Confidence 9999964
No 145
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=1e-14 Score=150.60 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=102.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCC-ccc---cCCCCccccc-----------c
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDER-EGS---VPFSPLDKFG-----------K 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~-~~~---i~g~~~~~~~-----------~ 117 (551)
..|+|+|+|.+|||||||+|+|+|.++. +.+.+.+|..... ...... ... ..+..|.... .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~--p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS--CCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC--CCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999998863 2222222222221 111110 000 0111111111 0
Q ss_pred c---ccccccceeEEecCCCCccCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhcc-CEEEEEEeCCCCCCChHHH
Q psy11743 118 F---GNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAERV-DRIILLFDAHKLDISDEFR 191 (551)
Q Consensus 118 ~---g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~a-D~il~VvDa~~~~~~~~~~ 191 (551)
. +..+......+.+.++-...++||||||+.......... ...+...+..++..+ +++++|+|+.. ++...+.
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~ 186 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDA 186 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccchhHH
Confidence 0 011111111222222222579999999997532110010 012455666666544 56666778764 5555554
Q ss_pred -HHHHHHhCCCCcEEEEEcCCCCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 192 -RSIEALRGHDDKIRIVLNKADMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 192 -~~l~~l~~~~~~vilVlNK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+++.+...+.|+++|+||+|+.+... .... ...........+.+++.+||+++.++
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~----~~~~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDV----LENKLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHH----HTTCSSCCTTCEEECCCCCHHHHHTT
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHH----HhCCcccccCCceEEEeCCccccccc
Confidence 477777778899999999999986432 1111 11111111223456788999988877
No 146
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.52 E-value=7.8e-14 Score=144.61 Aligned_cols=138 Identities=13% Similarity=0.042 Sum_probs=94.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|.+|+|||||+|+|+.+ +.|.+....... +.+ .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~----------------------~~~-----------~ 60 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK---------GTSSDITMYNND----------------------KEG-----------R 60 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE---------EEESSSEEEEEC----------------------SSS-----------S
T ss_pred EEEEECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEe----------------------cCC-----------e
Confidence 8999999999999999999822 112222111000 001 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcE-EEEEc-CCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKI-RIVLN-KADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~v-ilVlN-K~Dl~~ 215 (551)
.+.+|||||+.+ |...+...+..+|++++|+| .. +...+..+++..+...+.|. ++|+| |+|+ +
T Consensus 61 ~i~iiDtPGh~~-----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 61 NMVFVDAHSYPK-----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEEEEECTTTTT-----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C
Confidence 599999999865 56667778899999999999 64 78888888888887778887 99999 9999 6
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEE--ecccC---CCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVY--IGSFW---DQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~--iSa~~---g~~~ 252 (551)
.+...+........+... +....++++ +||++ +.|+
T Consensus 127 ~~~~~~~~~~i~~~l~~~-~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 127 MHAIDELKAKLKVITSGT-VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp HHHHHHHHHHHHHHTTTS-TTTTCEEEECCCCTTSSSTTTTH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCceEEEecccccccCcCCCCH
Confidence 543322211111112111 223468899 99998 7776
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.52 E-value=9.3e-16 Score=165.43 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|+|+++|++|+|||||+|+|++.++... ..++.|.+.... . +..+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~----------------------~--------v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAF----------------------L--------VSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSC----------------------C--------BCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEE----------------------E--------EEeCCC
Confidence 468999999999999999999998775321 222222221100 0 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|+.
T Consensus 52 --~~i~~iDTPGhe~-----------f~~~~~~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 52 --EKITFLDTPGHAA-----------FSAMRARGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp --SCCBCEECSSSCC-----------TTTSBBSSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred --CEEEEEECCChHH-----------HHHHHHHHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4589999999865 22222334578999999999997 888888888888888899999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.... . ........+.... ....+++++||++|.|+
T Consensus 118 ~~~~~-~-v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 118 EADPE-K-VKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp TTSCC-S-SSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred ccchH-H-HHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 42110 0 0011112222111 12357889999999998
No 148
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.52 E-value=3.1e-15 Score=143.65 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+|+|+...+ ......++.+....... ... + .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~----------------~-----~------- 63 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNR----------------G-----P------- 63 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE-ETT----------------E-----E-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-ECC----------------E-----E-------
Confidence 4568999999999999999999665432 11122222222221110 000 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK 210 (551)
..+.+|||||... +......++.++|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 64 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK 128 (221)
T 3gj0_A 64 ----IKFNVWDTAGQEK-----------FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK 128 (221)
T ss_dssp ----EEEEEEEECSGGG-----------TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred ----EEEEEEeCCChHH-----------HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 3489999999643 222344567899999999999852111122344444432 37899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+ ...... ....+.+.+||++|.|+
T Consensus 129 ~Dl~~~~~~~~-~~~~~~-------~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 129 VDIKDRKVKAK-SIVFHR-------KKNLQYYDISAKSNYNF 162 (221)
T ss_dssp TTSSSCSSCGG-GCCHHH-------HHTCEEEECBGGGTBTT
T ss_pred CccccccccHH-HHHHHH-------HcCCEEEEEeCCCCCCH
Confidence 99975321110 001111 11236788999999988
No 149
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.51 E-value=5.7e-14 Score=145.44 Aligned_cols=161 Identities=19% Similarity=0.295 Sum_probs=97.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc------cc---CCCCcccccc--------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG------SV---PFSPLDKFGK-------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~------~i---~g~~~~~~~~-------- 117 (551)
..|.|+|+|.+|||||||+|+|+|.++. +.+.+++|.+.+.+....... .+ ++..|..+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~l--p~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL--PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCS--CCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcC--CCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 5689999999999999999999998863 445555554444333221100 00 1111111100
Q ss_pred ------cccccccceeEEecCCCCccCeEEEeCCCCCCCccc--ccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-h
Q psy11743 118 ------FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQ--RVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-D 188 (551)
Q Consensus 118 ------~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~--~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-~ 188 (551)
.+..+......+.+.++....+++|||||+...... .-.....+...+..++.++|++++|+|+.+.+.. .
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 012222233333344444467999999999863211 0111123466777889999999999987643332 3
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 189 EFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 189 ~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
....++..+...+.|+++|+||+|+.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 33566666667788999999999998643
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.51 E-value=4.3e-14 Score=154.66 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=96.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+...
T Consensus 71 ~~l~liDTPGh~d-----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp EEEEEEECCCCGG-----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEeeeccCcccc
Confidence 3589999999864 66677888999999999999996 67777766666666678999999999999763
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
. ..+........++ .+..+++++||++|.|+ ++|++.+... -+
T Consensus 139 ~-~~~v~~ei~~~lg----~~~~~vi~vSAktg~GI-------------~~Ll~~I~~~-------------------lp 181 (599)
T 3cb4_D 139 D-PERVAEEIEDIVG----IDATDAVRCSAKTGVGV-------------QDVLERLVRD-------------------IP 181 (599)
T ss_dssp C-HHHHHHHHHHHTC----CCCTTCEEECTTTCTTH-------------HHHHHHHHHH-------------------SC
T ss_pred c-HHHHHHHHHHHhC----CCcceEEEeecccCCCc-------------hhHHHHHhhc-------------------CC
Confidence 2 1111112111222 22335789999999887 4555544111 01
Q ss_pred CCCccccCCCcEEEEEee---cCCChhHHHHHHHhC
Q psy11743 297 PYEDADFDAKPTVMLVGQ---YSTGKTTFIRYLLER 329 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~---~~~gKss~~n~l~~~ 329 (551)
++. .....|.+..++.. +++|+.++++-+-|.
T Consensus 182 ~p~-~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 182 PPE-GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CCC-CCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred Ccc-ccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 111 12345666666654 889998888777776
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=144.54 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+. .+..... +. +.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~------~~----------~~------------- 76 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVM------VD----------GK------------- 76 (204)
Confidence 4578999999999999999999987642 11112221 1100000 00 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++.++|++++|+|+.+....... ..++..+... +.|+++|+||
T Consensus 77 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 77 --PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 02467999999764 344555677899999999999852222222 2455555544 7899999999
Q ss_pred CCCCCHHHHHHHHHHH------HHHcccccCCCC-ceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGAL------MWSLGKVLQTPE-VARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~------~~~l~~l~~~~~-~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+..... ......+..... .+++.+||++|.|+
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi 192 (204)
T 3th5_A 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
Confidence 9998643211110000 000000111112 26778999999988
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=6.1e-14 Score=151.71 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=58.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+...++..+...+.|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 82 YLINLLDTPGHAD-----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEEECCCchh-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 4589999999875 55567778899999999999997 7888888888888888999999999999974
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.50 E-value=4.7e-14 Score=148.37 Aligned_cols=102 Identities=24% Similarity=0.212 Sum_probs=74.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+.| +++|+||+|+..
T Consensus 75 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 75 RHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred eEEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 4589999999864 66777788899999999999996 7778888888888778888 889999999985
Q ss_pred HHHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+ .....+..++. .....+++++||++|.++
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEF--PGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcc--cccCCCEEEccHHHhhhh
Confidence 332211 22233333332 112357899999887653
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=2.6e-13 Score=128.80 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=90.9
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....+|+++|++|+|||||+|+|+|..+ ..+...++.+...... . ++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~-~------------------~~------------ 71 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF-E------------------VA------------ 71 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-E------------------EE------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-E------------------ec------------
Confidence 34567899999999999999999998762 2122222222211100 0 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+.++||||+..... .......+...+..++ ..+|.+++++|+.. +.+..+.++..++...+.|+++|.
T Consensus 72 -----~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 72 -----DGKRLVDLPGYGYAEV-PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp -----TTEEEEECCCCC-------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred -----CCEEEEECcCCccccc-CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEE
Confidence 2378999999864210 0000011233333344 57899999999985 556655566677777789999999
Q ss_pred cCCCCCCHHHHHH---HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..+..+ .....+ .. .....+..++||+.+.++
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~---~~--~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAV---LA--FNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHH---GG--GCSCEEEEECBTTTTBSH
T ss_pred ecccCCCchhHHHHHHHHHHHH---Hh--cCCCCceEEEeecCCCCH
Confidence 9999998643322 111221 11 011346678999888776
No 155
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=2.8e-14 Score=136.44 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=85.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++.........+.++.+.... +..+. ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~-----------------~~------------ 86 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG-----------------ES------------ 86 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT-----------------EE------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC-----------------ee------------
Confidence 4478999999999999999999986543222222222222111 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||+|.... +......+...+|++++|+|..+.........+...+.+ .+.|+++|+|
T Consensus 87 ---~~l~~~Dt~g~~~~----------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN 153 (211)
T 2g3y_A 87 ---ATIILLDMWENKGE----------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153 (211)
T ss_dssp ---EEEEEECCTTTTHH----------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred ---eEEEEeecCCCcch----------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 23678999996430 111223345779999999999852111222334444443 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+..... ..+.... ..+.+.+||++|.|+
T Consensus 154 K~DL~~~r~v~~~e~-~~~a~~~-----~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 154 KSDLVRCREVSVSEG-RACAVVF-----DCKFIETSAAVQHNV 190 (211)
T ss_dssp CTTCGGGCCSCHHHH-HHHHHHH-----TCEEEECBTTTTBSH
T ss_pred ChHHhcCceEeHHHH-HHHHHHc-----CCEEEEEeCCCCCCH
Confidence 999964321111011 1111111 136788999999988
No 156
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=4.3e-15 Score=163.16 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=60.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC----CC--ChHHHHHHHHHhCCCCc-EEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL----DI--SDEFRRSIEALRGHDDK-IRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~----~~--~~~~~~~l~~l~~~~~~-vilVlN 209 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+... ++ ..+..+.+..+...+.| +|+|+|
T Consensus 255 ~~i~iiDTPGh~~-----------f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviN 323 (592)
T 3mca_A 255 KIYEIGDAPGHRD-----------FISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323 (592)
T ss_dssp ----CCEEESSSE-----------EEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEE
T ss_pred eEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEe
Confidence 4689999999875 222223345789999999999852 23 56666777777777776 999999
Q ss_pred CCCCCC--HHHHHHHH---HHHH-HHcccccCCCCceEEEecccCCCCCc
Q psy11743 210 KADMVD--HQQLMRVY---GALM-WSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 210 K~Dl~~--~~~~~~~~---~~~~-~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
|+|+.+ ........ ...+ ..++. .....+++++||++|.|+.
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~--~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGF--KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCC--CGGGEEEEEECSSSCSSSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCC--CccceEEEEEecccCcccc
Confidence 999975 33222221 1111 11222 2224578999999999984
No 157
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=2e-13 Score=135.59 Aligned_cols=124 Identities=14% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|+|||||+|+|++..+..+...++.|.+........ .+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------------~~---------- 86 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR----------------------AG---------- 86 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE----------------------TT----------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee----------------------CC----------
Confidence 4789999999999999999999988654444444443332221110 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-C----CcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-D----DKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~----~~vilVl 208 (551)
..+.+|||||+.+... .. ..+.+.+..++ ..+|++|+|+|+....++..+..++..+... + .|+++|+
T Consensus 87 -~~l~iiDTpG~~~~~~--~~--~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~ 161 (270)
T 1h65_A 87 -FTLNIIDTPGLIEGGY--IN--DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 161 (270)
T ss_dssp -EEEEEEECCCSEETTE--EC--HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -eEEEEEECCCCCCCcc--ch--HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEE
Confidence 3589999999975321 11 11233333332 4799999998886435666666777766532 2 6899999
Q ss_pred cCCCCCCH
Q psy11743 209 NKADMVDH 216 (551)
Q Consensus 209 NK~Dl~~~ 216 (551)
||+|+.++
T Consensus 162 nK~Dl~~~ 169 (270)
T 1h65_A 162 THAQFSPP 169 (270)
T ss_dssp ECCSCCCG
T ss_pred ECcccCCc
Confidence 99999864
No 158
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.49 E-value=2.1e-16 Score=149.28 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=81.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+. .
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~------------ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDG-----------------K------------ 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECC-----------------E------------
Confidence 345799999999999999999999876531 1111112222111 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlN 209 (551)
...+.+|||||...- ......++..+|++++|+|+.+.........++..+... +.|+++|+|
T Consensus 81 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 81 ---TIKLQIWDTAGQERF-----------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp ---EEEEEEECCTTCTTC-----------CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-C
T ss_pred ---EEEEEEEECCCcHhH-----------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 024899999997642 112233568899999999998622222334555555543 689999999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...... ......... ..+++.+||++|.|+
T Consensus 147 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 147 KCDLTTKKVVDYTTAKEFADSL-------GIPFLETSAKNATNV 183 (199)
T ss_dssp CSSCC--CCCCSCC-CHHHHTT-------TCCBCCCCC---HHH
T ss_pred CccCCccccCCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 999975422100 011111111 235677999888776
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.8e-14 Score=131.92 Aligned_cols=120 Identities=18% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++..+........+++... + ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~-------- 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----------------------Y-----DG-------- 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----------------------C-----CC--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----------------------e-----cC--------
Confidence 356899999999999999999999987532111111221100 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC-CCCCChHHHHHHHHH-h------CCCCcEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFRRSIEAL-R------GHDDKIR 205 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~-~~~~~~~~~~~l~~l-~------~~~~~vi 205 (551)
..+.+|||||...... .+...+...+..+|++++|+|+. ..........++..+ . ..+.|++
T Consensus 91 ---~~~~l~Dt~G~~~~~~-------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 160 (193)
T 2ged_A 91 ---SGVTLVDFPGHVKLRY-------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160 (193)
T ss_dssp ---TTCSEEEETTCCBSSC-------CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred ---CeEEEEECCCCchHHH-------HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE
Confidence 4589999999875221 13444445556799999999997 311111111222222 1 2478999
Q ss_pred EEEcCCCCCCHHH
Q psy11743 206 IVLNKADMVDHQQ 218 (551)
Q Consensus 206 lVlNK~Dl~~~~~ 218 (551)
+|+||+|+.+...
T Consensus 161 lv~nK~Dl~~~~~ 173 (193)
T 2ged_A 161 IACNKSELFTARP 173 (193)
T ss_dssp EEEECTTSTTCCC
T ss_pred EEEEchHhcCCCC
Confidence 9999999986443
No 160
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.48 E-value=2.7e-13 Score=133.98 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...++.|.......... .+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------------~~--------- 83 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM----------------------GG--------- 83 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE----------------------TT---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE----------------------CC---------
Confidence 45789999999999999999999988644444444443332221110 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilV 207 (551)
..+.+|||||+.+.... ...+.+.++.++ .++|++++|+|+....++..+..+++.+... .+|+++|
T Consensus 84 --~~l~liDTpG~~~~~~~----~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 157 (262)
T 3def_A 84 --FTINIIDTPGLVEAGYV----NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLV 157 (262)
T ss_dssp --EEEEEEECCCSEETTEE----CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred --eeEEEEECCCCCCcccc----hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEE
Confidence 35899999999763211 112333343333 3899999998887545666666777766542 2489999
Q ss_pred EcCCCCCC
Q psy11743 208 LNKADMVD 215 (551)
Q Consensus 208 lNK~Dl~~ 215 (551)
+||+|+.+
T Consensus 158 ~nK~Dl~~ 165 (262)
T 3def_A 158 LTHAQFSP 165 (262)
T ss_dssp EECTTCCC
T ss_pred EeCcccCC
Confidence 99999963
No 161
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.48 E-value=3.1e-14 Score=132.43 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=73.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+. ....||.......... +. +.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~----------~~-------------- 53 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFE-----ID----------TQ-------------- 53 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----CS----------SC--------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEE-----EC----------CE--------------
Confidence 4578999999999999999999998753 2222332221110000 00 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+||
T Consensus 54 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK 120 (184)
T 1m7b_A 54 -RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120 (184)
T ss_dssp -EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCEEEEEEEC
T ss_pred -EEEEEEEECCCChh-----------hhhhHHhhcCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEc
Confidence 03489999999753 22223345689999999999985 222121 234444443 47899999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+.+
T Consensus 121 ~Dl~~ 125 (184)
T 1m7b_A 121 SDLRT 125 (184)
T ss_dssp GGGGG
T ss_pred chhhc
Confidence 99974
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.48 E-value=2.1e-13 Score=143.67 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|..++|||||+|+|+|........ .++.|.+.-.. ....... ..+ .|.... .++
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~-~~~--------~y~~~~-------~~~ 73 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP-NCG--------RYSTSP-------VCP 73 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT-TTC--------CEESSS-------BCT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc-ccc--------cccccc-------ccc
Confidence 4689999999999999999999764321111 12223222110 0000000 000 000000 000
Q ss_pred ---CCC--ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEE
Q psy11743 133 ---SPV--LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIR 205 (551)
Q Consensus 133 ---~~~--l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vi 205 (551)
..+ ...+.+|||||+.+ |...+...+..+|++++|+|+.+ +. ..+..+.+..+...+ .|++
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~~~~~~ii 141 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANE-PCPRPQTREHLMALQIIGQKNII 141 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEE
T ss_pred ccCcccccccEEEEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEE
Confidence 000 14589999999753 56666777789999999999996 54 566666655555434 5799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+.+.....+......+... .....+++++||++|.|+
T Consensus 142 vviNK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 142 IAQNKIELVDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANI 187 (410)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSH
T ss_pred EEEECccCCCHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCH
Confidence 9999999998654322222211111110 123468899999998887
No 163
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=1.3e-13 Score=139.02 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=104.0
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.+.++|| ... +......++.++|++++|+|++++..+.. ...++..++..+.|+++|+||+|+.+.
T Consensus 64 ~~~iwD~--qer-----------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 64 SGVIENV--LHR-----------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE 130 (301)
T ss_dssp SEEEEEE--CCC-----------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred eEEEEEE--ccc-----------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc
Confidence 5889999 222 12223346789999999999997443433 345666666678999999999999876
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
..+.+ .......... . .+++.+||++|.|+ ++++..+
T Consensus 131 ~~v~~-~~~~~~~~~~---~--~~~~~~SAktg~gv-------------~~lf~~l------------------------ 167 (301)
T 1u0l_A 131 DDLRK-VRELEEIYSG---L--YPIVKTSAKTGMGI-------------EELKEYL------------------------ 167 (301)
T ss_dssp HHHHH-HHHHHHHHTT---T--SCEEECCTTTCTTH-------------HHHHHHH------------------------
T ss_pred hhHHH-HHHHHHHHhh---h--CcEEEEECCCCcCH-------------HHHHHHh------------------------
Confidence 54311 1111111111 1 46788999999887 4444433
Q ss_pred CCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCC--c-cccc--CCCcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 297 PYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFP--G-IHIG--PEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~--~-~~v~--~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
..-.++++|++|+||||++|.|.+...+ | +.+. ....+|+......-.....++||||+...+..
T Consensus 168 --------~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~ 237 (301)
T 1u0l_A 168 --------KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIN 237 (301)
T ss_dssp --------SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCC
T ss_pred --------cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCC
Confidence 1347899999999999999999987421 1 1110 12223432111111345678899998876643
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.47 E-value=4.3e-14 Score=150.90 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=70.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-------HHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-------EFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-------~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +... +..+.+..+...+.| +++|+
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAV 152 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence 4599999999864 67777788899999999999985 3222 455555556666776 89999
Q ss_pred cCCCCCC--HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVD--HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~--~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+ .+.. .+.+...+..++. .....+++++||++|.++.
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~--~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGY--NPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTC--CGGGCCEEECCTTTCBTTT
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCC--CccCceEEEeecccCcCcc
Confidence 9999983 3322 1222223333332 1113578999999999883
No 165
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.47 E-value=4.5e-14 Score=134.22 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. ....+|.......... +.+ .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~~----------~------------- 74 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFE-----IDT----------Q------------- 74 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----SSS----------S-------------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCccceeEEEEEE-----ECC----------E-------------
Confidence 34579999999999999999999998753 2222332221110000 000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 75 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~n 140 (205)
T 1gwn_A 75 --RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGC 140 (205)
T ss_dssp --EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCEEEEEEE
T ss_pred --EEEEEEEeCCCcHh-----------hhHHHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEe
Confidence 03489999999753 22223345689999999999985 222111 234444443 4789999999
Q ss_pred CCCCCC
Q psy11743 210 KADMVD 215 (551)
Q Consensus 210 K~Dl~~ 215 (551)
|+|+.+
T Consensus 141 K~Dl~~ 146 (205)
T 1gwn_A 141 KSDLRT 146 (205)
T ss_dssp CGGGGG
T ss_pred chhhcc
Confidence 999974
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.47 E-value=8.7e-14 Score=145.91 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=72.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++++|+|+.+ +...+..+.+..+...+.| +++|+||+|+.+
T Consensus 66 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 66 RHYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CEEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 4589999999854 66677777899999999999996 7777777777777777888 689999999985
Q ss_pred HHHHH----HHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 216 HQQLM----RVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 216 ~~~~~----~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
.++.. +.....+...+. .....+++++||++|.+
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTEFGY--KGEETPIIVGSALCALE 171 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCC--CcccCcEEEeehhhccc
Confidence 32221 122233333332 11235789999988765
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.46 E-value=1.3e-13 Score=128.27 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=83.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|++.... ......+|.........-. +.+ ..+ .
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~-~~~~~~~t~g~~~~~~~~~----~~~-------~~~-------------~-- 54 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKS-DLGMQSATVGIDVKDWPIQ----IRD-------KRK-------------R-- 54 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCc-cCCCcceeccEEeEEeeec----ccc-------CCC-------------C--
Confidence 368999999999999999999985311 1111222322111000000 000 000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC--hHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS--DEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|.++ +.. .....++..+.. .+.|+++|.||+
T Consensus 55 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~~s~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 55 DLVLNVWDFAGREE-----------FYSTHPHFMTQRALYLAVYDLSK-GQAEVDAMKPWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp -CEEEEEEECSHHH-----------HHTTSHHHHHHSEEEEEEEEGGG-CHHHHHTHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ceEEEEEecCCCHH-----------HHHhhHHHccCCcEEEEEEeCCc-chhHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 03488999999743 23333456788999999999985 211 122344444332 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCC-CceEEEecccCCC-CC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTP-EVARVYIGSFWDQ-PL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~-~~~~v~iSa~~g~-~~ 252 (551)
|+.+..............+..-.+.+ ..+.+.+||+++. ++
T Consensus 123 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL 165 (184)
T ss_dssp GGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred CcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence 99876543221111111222111211 1136889998875 44
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.46 E-value=2.3e-13 Score=140.71 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=86.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.|+|+|.+|+|||||+|+|+|... .+...+.+|.+....-.. +++
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~------------------------------~~g-- 225 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIP------------------------------INN-- 225 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEE------------------------------ETT--
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEE------------------------------ECC--
Confidence 45699999999999999999999874 334445555444221110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC--CChHH---HHHHHHHhCCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD--ISDEF---RRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~--~~~~~---~~~l~~l~~~~~~vilVlNK 210 (551)
..+.++||||+........- +....+...+..+|++++|+|+++.. ..... .+++..+...+.|+++|+||
T Consensus 226 -~~v~l~DT~G~i~~lp~~lv---e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK 301 (364)
T 2qtf_A 226 -RKIMLVDTVGFIRGIPPQIV---DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK 301 (364)
T ss_dssp -EEEEEEECCCBCSSCCGGGH---HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC
T ss_pred -EEEEEEeCCCchhcCCHHHH---HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC
Confidence 34789999997542111110 11223445678999999999998521 11111 12333333357899999999
Q ss_pred CCCCCHH--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQ--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.. +...........+. .+.++++++||+++.|+
T Consensus 302 ~Dl~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 302 IDKINGDLYKKLDLVEKLSKELY----SPIFDVIPISALKRTNL 341 (364)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHC----SCEEEEEECBTTTTBSH
T ss_pred CCCCCchHHHHHHHHHHHHHHhc----CCCCcEEEEECCCCcCH
Confidence 9998642 11111111111120 12335688999998887
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.46 E-value=2.8e-13 Score=143.78 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=72.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCCC-cEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHDD-KIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~-~vilVl 208 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.+ + ...+..+.+..+...+. ++++|+
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 4599999999875 66677778899999999999996 5 44466666666666665 589999
Q ss_pred cCCCCCC----HHH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVD----HQQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~----~~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+ .+. ..+.+...+..++. .....+++++||++|.|+
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF--NTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC--CCTTCEEEECBTTTTBTT
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCC--CcCCceEEEeecccCccc
Confidence 9999986 221 12223333333332 112367899999999987
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.46 E-value=1.2e-13 Score=151.21 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..|+|+|+|++|+|||||+|+|++..+. ...+ +.|.+. ...+.+... ....+..... +... ..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~-~~~~~~~~~~---~~v~-~~-------- 68 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVI-EGICGDFLKK---FSIR-ET-------- 68 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHH-HHHSCGGGGG---CGGG-GT--------
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechh-hhhccccccc---cccc-cc--------
Confidence 4689999999999999999999987642 1112 112111 111110000 0000000000 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
...++||||||+.+- .......+..+|++|+|+|+.+ +...+..+.+..+...+.|+++|+||+|
T Consensus 69 ---~~~i~liDTPGhe~F-----------~~~~~r~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVViNKiD 133 (594)
T 1g7s_A 69 ---LPGLFFIDTPGHEAF-----------TTLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKID 133 (594)
T ss_dssp ---CCEEEEECCCTTSCC-----------TTSBCSSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ---cCCEEEEECCCcHHH-----------HHHHHHHHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEEecccc
Confidence 024899999998752 1112234578999999999997 7888888888888888999999999999
Q ss_pred CCC
Q psy11743 213 MVD 215 (551)
Q Consensus 213 l~~ 215 (551)
+.+
T Consensus 134 l~~ 136 (594)
T 1g7s_A 134 RIH 136 (594)
T ss_dssp GST
T ss_pred ccc
Confidence 964
No 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=5.9e-14 Score=131.89 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+++|.+|||||||+|+|++.........+.++.+.... +..+. ..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~------------- 55 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG-----------------ES------------- 55 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT-----------------EE-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC-----------------eE-------------
Confidence 478999999999999999999986542222222122222111 11110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||+|...... + ....+...+|++++|+|..+.........+...+. ..+.|+++|.||
T Consensus 56 --~~l~~~Dt~~~~~~~~--------~--~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK 123 (192)
T 2cjw_A 56 --ATIILLDMWENKGENE--------W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123 (192)
T ss_dssp --EEEEEECCCCC----C--------T--TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred --EEEEEEEeccCcchhh--------h--HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEec
Confidence 2367899999754110 1 11234567999999999985211112223333332 236899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+... ....+.... ..+.+.+||++|.|+
T Consensus 124 ~Dl~~~r~v~~~-~~~~~a~~~-----~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 124 SDLVRXREVSVS-EGRAXAVVF-----DXKFIETSAAVQHNV 159 (192)
T ss_dssp TTCGGGCCSCHH-HHHHHHHHT-----TCEEEECBTTTTBSH
T ss_pred hhhhccccccHH-HHHHHHHHh-----CCceEEeccccCCCH
Confidence 998643211110 111111111 235688999999988
No 172
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=2.2e-13 Score=143.44 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|..++|||||+|+|+|........ .++.|.+.-.. ....... ..+ .|.... .+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~-~~~--------~y~~~~-------~~ 70 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCP-QCG--------TYTTKP-------RC 70 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECT-TTC--------CEESSS-------BC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccccccc-ccc--------cccccc-------cc
Confidence 45789999999999999999999764321111 12223221110 0000000 000 000000 00
Q ss_pred CC---C--CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcE
Q psy11743 132 NS---P--VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKI 204 (551)
Q Consensus 132 ~~---~--~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~v 204 (551)
+. . ....+.+|||||+.+ |...+...+..+|++++|+|+.+ +. ..+..+.+..+...+ .|+
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~l~~~~i 138 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHET-----------LMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGIDKI 138 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTS-CSSCHHHHHHHHHHHHTTCCCE
T ss_pred cccCcccccccEEEEEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCCchhHHHHHHHHHcCCCeE
Confidence 00 0 014599999999743 55556666678899999999996 54 566666666655444 479
Q ss_pred EEEEcCCCCCCHHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+.+.+.. .+.+...+. +. .....+++++||++|.|+
T Consensus 139 ivv~NK~Dl~~~~~~~~~~~~i~~~l~--~~--~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 139 IIVQNKIDLVDEKQAEENYEQIKEFVK--GT--IAENAPIIPISAHHEANI 185 (408)
T ss_dssp EEEEECTTSSCTTTTTTHHHHHHHHHT--TS--TTTTCCEEEC------CH
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHh--hc--CCCCCeEEEeeCCCCCCH
Confidence 999999999864321 111222211 11 123457899999998887
No 173
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=1.2e-12 Score=132.09 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEE
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVY 243 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~ 243 (551)
.++.++|++++|+|++++..+... ..++..+...++|+++|+||+|+.++.++ .+.+...+..++ .++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g-------~~~~~ 147 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG-------YDVLK 147 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT-------CEEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC-------CeEEE
Confidence 467999999999999974445443 45666666778999999999999976531 122222222222 36889
Q ss_pred ecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHH
Q psy11743 244 IGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFI 323 (551)
Q Consensus 244 iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~ 323 (551)
+||++|.|+ ++|+..+ ..-.++++|++|+||||++
T Consensus 148 ~SA~~g~gi-------------~~L~~~l--------------------------------~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 148 VSAKTGEGI-------------DELVDYL--------------------------------EGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp CCTTTCTTH-------------HHHHHHT--------------------------------TTCEEEEECSTTSSHHHHH
T ss_pred EECCCCCCH-------------HHHHhhc--------------------------------cCcEEEEECCCCCCHHHHH
Confidence 999999887 4454443 2347899999999999999
Q ss_pred HHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCC
Q psy11743 324 RYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 324 n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|.|. ..- ...+.. ..+|+......-.....++||||+....
T Consensus 183 n~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 183 SRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVE 230 (302)
T ss_dssp HHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCC
T ss_pred HHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCc
Confidence 9999 631 122222 2244433222223456788999987544
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.44 E-value=1.2e-14 Score=155.64 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=94.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|+|+++|++++|||||+++|++..+. ....++.|.+.... . + .+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~-------------~---v------~~~~--------- 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAY-------------H---V------ETEN--------- 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCC-------------C---C------CTTS---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEE-------------E---E------EECC---------
Confidence 4689999999999999999999986542 11112222211000 0 0 0011
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||+.+- .......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|+.
T Consensus 51 --~~i~~iDTPGhe~f-----------~~~~~~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 --GMITFLDTPGHAAF-----------TSMRARGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp --SCCCEECCCTTTCC-----------TTSBCSSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred --EEEEEEECCCcHHH-----------HHHHHHHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 45899999998652 2122234578999999999986 666666677777777889999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCC--CCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQT--PEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~--~~~~~v~iSa~~g~~~ 252 (551)
.... .+ ....+...+.+... ...+++++||++|.|+
T Consensus 117 ~~~~-~~-v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 117 EADP-DR-VKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp TTCC-CC-TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred ccCH-HH-HHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 5210 00 00000001111111 1258899999999998
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.44 E-value=2.1e-13 Score=145.87 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +. ..+..+.+..+...+.| +++|+
T Consensus 121 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVI 188 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 4689999999865 55566677899999999999986 42 13445555666667787 99999
Q ss_pred cCCCCCC----HHHHH---HHHHHHHHHc-ccccC-CCCceEEEecccCCCCC
Q psy11743 209 NKADMVD----HQQLM---RVYGALMWSL-GKVLQ-TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~----~~~~~---~~~~~~~~~l-~~l~~-~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.. .+... ..+...+..+ +. . ....+++++||++|.|+
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~--~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGY--NSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC--CHHHHEEEEECBTTTTBTT
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCC--CccCCceEEeccccccccc
Confidence 9999964 22211 1222222222 22 1 01457899999999998
No 176
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.43 E-value=7e-13 Score=144.81 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=72.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+...
T Consensus 73 ~~inliDTPGh~d-----------F~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 73 YKLHLIDTPGHVD-----------FSYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEEEECCCCSGG-----------GHHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCcHh-----------HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 3588999999965 66677788899999999999996 77777766666666778999999999999753
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. ..+........+ +....+++++||++|.|+
T Consensus 141 ~-~~~v~~el~~~l----g~~~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 141 D-VDRVKKQIEEVL----GLDPEEAILASAKEGIGI 171 (600)
T ss_dssp C-HHHHHHHHHHTS----CCCGGGCEECBTTTTBSH
T ss_pred C-HHHHHHHHHHhh----CCCcccEEEEEeecCCCc
Confidence 2 112222221112 223335789999999887
No 177
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.42 E-value=3e-13 Score=136.04 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=91.2
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHH---HHHHHHHHHHHcccccCCCCceEE
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQ---LMRVYGALMWSLGKVLQTPEVARV 242 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~---~~~~~~~~~~~l~~l~~~~~~~~v 242 (551)
..+.++|.+++|+|++.+.++... .+++..+...++|+++|+||+|+.++.+ ..+.+...+..+|. +++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-------~v~ 154 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-------DVY 154 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-------CEE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-------eEE
Confidence 468999999999999964554432 2333344567899999999999998643 12333333333332 678
Q ss_pred EecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHH
Q psy11743 243 YIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTF 322 (551)
Q Consensus 243 ~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~ 322 (551)
++||.++.++ ++|+... ...+++++|++|+||||+
T Consensus 155 ~~sa~~~~g~-------------~~L~~~~--------------------------------~G~~~~lvG~sG~GKSTL 189 (307)
T 1t9h_A 155 LTSSKDQDSL-------------ADIIPHF--------------------------------QDKTTVFAGQSGVGKSSL 189 (307)
T ss_dssp ECCHHHHTTC-------------TTTGGGG--------------------------------TTSEEEEEESHHHHHHHH
T ss_pred EEecCCCCCH-------------HHHHhhc--------------------------------CCCEEEEECCCCCCHHHH
Confidence 8999877776 2233222 134799999999999999
Q ss_pred HHHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCC
Q psy11743 323 IRYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 323 ~n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+|.|.+... ..++.. .++|+......-. ...++||||+....
T Consensus 190 ln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 190 LNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLE 238 (307)
T ss_dssp HHHHCC---------------------CCCCCEEEET-TEEEESSCSCSSCC
T ss_pred HHHhccccc--ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccccc
Confidence 999998742 222222 2344422211111 46789999998754
No 178
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.41 E-value=1.7e-13 Score=139.49 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||+|+|++..+. .. ..+|+. .+.....- . +.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~-~~~t~~~~~~~~~~~------~----------~~------------- 201 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GE-YIPTVFDNYSANVMV------D----------GK------------- 201 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CS-CCCCSEEEEEEEEEE------T----------TE-------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cc-cCCcccceeEEEEEE------C----------CE-------------
Confidence 4578999999999999999999987752 12 222322 22111000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH--HHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR--RSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~--~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+.... .++..+.. .+.|+++|+|
T Consensus 202 --~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~n 267 (332)
T 2wkq_A 202 --PVNLGLWDTAGLED-----------YDRLRPLSYPQTDVFLICFSLVS-PASFHHVRAKWYPEVRHHCPNTPIILVGT 267 (332)
T ss_dssp --EEEEEEEEECCCGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTSCEEEEEE
T ss_pred --EEEEEEEeCCCchh-----------hhHHHHHhccCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 02367999999754 22233345689999999999985 2222221 34444443 2789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+.. ....+.. .....+++.+||++|.|+
T Consensus 268 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 317 (332)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhcccccchhhhccccccccccHHHHHHHHH--HcCCcEEEEecCCCCcCH
Confidence 9999754321111100 0000000 111237889999999887
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=2e-13 Score=142.68 Aligned_cols=111 Identities=22% Similarity=0.214 Sum_probs=47.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc--ccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG--KFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~--~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|.+|||||||+|+|++.. ..+...|++|++....+.+-.. .++...++.+. .++. .+...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~--~~~~~~l~~~~~p~~~~---------~~~~~ 68 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAIT--DHPCKELGCSPNPQNYE---------YRNGL 68 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEE--ECSCSSSCCSCCCSSSC---------EETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeecc--CCchHHhhhhccccccc---------ccCCc
Confidence 369999999999999999999987 4455666667666554322100 00000000000 0000 00000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-...+.+|||||+..+... +..+.......++.+|++++|+|+.+
T Consensus 69 ~~~~i~lvDtpG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 69 ALIPVKMVDVAGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEEECC-------------------CCCSSTTCSEEEEEEETTC
T ss_pred ceEEEEEEECCCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 0024899999999753211 01111122234689999999999985
No 180
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.41 E-value=2.2e-13 Score=137.39 Aligned_cols=185 Identities=19% Similarity=0.171 Sum_probs=110.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|.||||||||+|+|++..+ ..++..|+||+.. ....++.++.++||||+.++. . .+...|..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~---~l~~~~~~ 78 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---D---ALGEFMDQ 78 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---S---HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---h---HHHHHHHH
Confidence 45799999999999999999999984 5678899999632 244567889999999998754 2 33333445
Q ss_pred hhhhhccccCccc-------cc---------ccccc--cceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 383 RFQCSLVNSPVLK-------GK---------VLQTP--EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~~---------~~~~~--~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.+..++..+|+.. +. ..... .++.++|+||+|+.-. . . .+.+.+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~----------~------~--~~~~~~ 140 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY----------P------E--EAMKAY 140 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS----------H------H--HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc----------h------H--HHHHHH
Confidence 5556666666421 11 11112 5677888888887210 0 0 011111
Q ss_pred HhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCC
Q psy11743 445 RKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHD 524 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 524 (551)
.+ +..+.+..+++++.+.+.+.|.+.+....++ ....||+ + .+ .+|
T Consensus 141 ---------------------~~----~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~---~~~~y~~-~----~~-~td 186 (301)
T 1wf3_A 141 ---------------------HE----LLPEAEPRMLSALDERQVAELKADLLALMPE---GPFFYPE-D----YA-KSD 186 (301)
T ss_dssp ---------------------HH----TSTTSEEEECCTTCHHHHHHHHHHHHTTCCB---CCCSSCT-T----CC-SBS
T ss_pred ---------------------HH----hcCcCcEEEEeCCCCCCHHHHHHHHHHhccc---CCCCCCc-c----cc-cCC
Confidence 00 0111223445555555554433332221111 1223332 2 11 256
Q ss_pred CCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 525 FTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.|..+...+.+++++.+.+.+++|.-
T Consensus 187 ~~~~~~~~e~~Re~~~~~l~~eiP~~ 212 (301)
T 1wf3_A 187 QTFGEWVAEILREEAMKRLWHEVPYA 212 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCce
Confidence 77767788999999999999999964
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=1.1e-12 Score=150.07 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=72.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 359 ~kI~IIDTPGHed-----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 359 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp CEEEEEECCCHHH-----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 4689999999864 66677778899999999999996 6677777777777767888 789999999986
Q ss_pred HHHHH----HHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 216 HQQLM----RVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 216 ~~~~~----~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.++.. +.....+...+. .....+++++||++|.
T Consensus 427 d~e~le~i~eEi~elLk~~G~--~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDF--PGDDTPIVRGSALKAL 463 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTCCEEECCSTTTT
T ss_pred chhhHHHHHHHHHHHHHhccc--cccceeEEEEEeccCC
Confidence 33321 222233333332 1124588999999884
No 182
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.38 E-value=6.1e-13 Score=144.92 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=83.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC-
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS- 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~- 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|.............+.+ .++.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~~~~~t~g~~~~~~~~~~~~~v----------------------~~~~~ 94 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFD---PKESQTHGLNVVTKQAPNIKGL----------------------ENDDE 94 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGG----------------------TTCST
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEeccccccce----------------------eecCC
Confidence 4589999999999999999999998752 2222222111110000000000 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
.-...+.++||||... +......++..+|++++|+|+++. .....++..+.. .+.|+++|+||+
T Consensus 95 ~~~~~~~i~Dt~G~e~-----------~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~ 160 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEI-----------MHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKI 160 (535)
T ss_dssp TTTCEEEEECCCSCCT-----------TTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCT
T ss_pred CceEEEEEEECCcHHH-----------HHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECC
Confidence 0014589999999654 222334567889999999999852 444566666664 358999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..++. +.....+ . ....+++.+||++|.|+
T Consensus 161 Dl~~~~~v~~~~~~~~~---~----~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 161 DENPSYNIEQKKINERF---P----AIENRFHRISCKNGDGV 195 (535)
T ss_dssp TTCTTCCCCHHHHHHHC---G----GGTTCEEECCC-----C
T ss_pred CcccccccCHHHHHHHH---H----hcCCceEEEecCcccCH
Confidence 997543211 1111111 1 11236889999999998
No 183
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.37 E-value=9.9e-13 Score=135.73 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.-.+|+|||.||||||||+|+|++.+ +.+...|.+|++....+..-. .
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~-----------------~-------------- 118 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYK-----------------G-------------- 118 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEET-----------------T--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeC-----------------C--------------
Confidence 34689999999999999999999987 456777888888876544311 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
.++.++||||+..+... +..........+++||++++|+|+.+ +.. ....+...|.. ..+|.++++|
T Consensus 119 --~~i~l~D~pGl~~~a~~----~~~~g~~~l~~i~~ad~il~vvD~~~-p~~-~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 119 --AKIQMLDLPGIIDGAKD----GRGRGKQVIAVARTCNLLFIILDVNK-PLH-HKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp --EEEEEEECGGGCCC---------CHHHHHHHHHHHCSEEEEEEETTS-HHH-HHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred --cEEEEEeCCCccCCchh----hhHHHHHHHHHHHhcCccccccccCc-cHH-HHHHHHHHHHHhhHhhccCChhhhhh
Confidence 45899999999875332 22244566677899999999999985 322 22223233332 3578899999
Q ss_pred CCCC
Q psy11743 210 KADM 213 (551)
Q Consensus 210 K~Dl 213 (551)
|+|.
T Consensus 191 K~d~ 194 (376)
T 4a9a_A 191 KKEK 194 (376)
T ss_dssp ECSS
T ss_pred Hhhh
Confidence 9996
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.34 E-value=5.5e-12 Score=136.54 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|+|||||+|+|++..-..-..+.....+ +.+...+.+. ....|..+. .....+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~-E~~rGiTi~----------~~~~~~~~- 79 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM-EKQRGISIT----------TSVMQFPY- 79 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CC----------TTEEEEEE-
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh-cccCCccee----------eeEEEEEE-
Confidence 457899999999999999999997532110000000000 0000000000 000111110 00000000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.. ..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+...++..+...+.|+++|+||+|
T Consensus 80 ~~--~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 80 HD--CLVNLLDTPGHED-----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TT--EEEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CC--eEEEEEECCCChh-----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 00 4589999999965 45566778899999999999996 7788888888888888999999999999
Q ss_pred CCCH
Q psy11743 213 MVDH 216 (551)
Q Consensus 213 l~~~ 216 (551)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9754
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.33 E-value=1.8e-12 Score=122.17 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=84.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+|+|++|||||||+|+|+|..+... ..|..+.+.... +..+ |..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~-----------------g~~------------- 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVD-----------------GKT------------- 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEET-----------------TEE-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEEC-----------------CEE-------------
Confidence 47899999999999999999999875321 112111111111 1110 100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......+...+|++++|+|... ..+.. ...++..+. ..+.|+++|+||
T Consensus 54 --~~~~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK 119 (199)
T 2f9l_A 54 --IKAQIWDTAGQER-----------YRRITSAYYRGAVGALLVYDIAK-HLTYENVERWLKELRDHADSNIVIMLVGNK 119 (199)
T ss_dssp --EEEEEEECSSGGG-----------TTCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --EEEEEEECCCchh-----------hhhhhHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 2367899999653 12223345578999999999875 22211 123443333 246889999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .....+.. ..+..+.+.+||+++.++
T Consensus 120 ~Dl~~~~~~~~~~a~~l~-------~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 120 SDLRHLRAVPTDEARAFA-------EKNNLSFIETSALDSTNV 155 (199)
T ss_dssp TTCGGGCCSCHHHHHHHH-------HHTTCEEEECCTTTCTTH
T ss_pred cccccccCcCHHHHHHHH-------HHcCCeEEEEeCCCCCCH
Confidence 999642111 01111111 122345677999988877
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.33 E-value=2e-13 Score=137.68 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~ 364 (551)
+...|+++|+||+|||||+|+|++..+ ..++..|++|+.. .+..++.++.++||||+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~--~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 345799999999999999999999973 5678889988632 244567889999999986
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.32 E-value=1.3e-11 Score=137.38 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=84.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|++|+|||||+++|++........+. .. .+........ ... ..|..+... ...+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~--V~-------~g~~~~d~~~---~e~-~~giti~~~--~~~~~~ 71 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGR--VE-------EGTTTTDYTP---EAK-LHRTTVRTG--VAPLLF 71 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC--GG-------GTCCSSCCSH---HHH-HTTSCCSCE--EEEEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccce--ec-------CCcccccCCH---HHH-hcCCeEEec--ceEEee
Confidence 34578999999999999999999976532111110 00 0000000000 000 000000000 000000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
. ...+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+
T Consensus 72 ~-~~~~nliDTpG~~~-----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 72 R-GHRVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp T-TEEEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEEEEEEeCCCccc-----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 0 13589999999864 56677888899999999999986 78888888888888889999999999998
Q ss_pred C
Q psy11743 214 V 214 (551)
Q Consensus 214 ~ 214 (551)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 7
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.32 E-value=5.2e-12 Score=129.96 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=53.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.... ....+.+|++++|+|+.. +...+ .+...+ ...|.++|+||+|+.+.
T Consensus 167 ~~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~-~~~~~--~i~~~i--l~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 167 YDIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAG-GDELQ--GIKRGI--IEMADLVAVTKSDGDLI 227 (349)
T ss_dssp CSEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGH
T ss_pred CCEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCc-chhHH--HhHHHH--HhcCCEEEEeeecCCCc
Confidence 468999999986421 123578999999999975 22111 111112 24688999999999864
Q ss_pred HHHHHHHHHHHHHcccccC---CCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQ---TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~---~~~~~~v~iSa~~g~~~ 252 (551)
.............+..... ...++++++||++|.|+
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 3322222222111221111 12357899999999987
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=125.88 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=47.4
Q ss_pred ccCEEEEEEeCCCC--CCChHHHHHHHHHh----CCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEe
Q psy11743 171 RVDRIILLFDAHKL--DISDEFRRSIEALR----GHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 171 ~aD~il~VvDa~~~--~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
++|++++|+|+++. ........++..+. ..+.|+++|+||+|+.+...+. ....... .....+.+.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~~------~~~~~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR-DAHTFAL------SKKNLQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH-HHHHHHH------TSSSCCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH-HHHHHHH------hcCCCeEEEE
Confidence 69999999999863 22222234444433 2478999999999998765442 1111111 1113467889
Q ss_pred cccCCCCC
Q psy11743 245 GSFWDQPL 252 (551)
Q Consensus 245 Sa~~g~~~ 252 (551)
||++|.|+
T Consensus 235 SAk~g~gv 242 (255)
T 3c5h_A 235 SARSNVNV 242 (255)
T ss_dssp BTTTTBSH
T ss_pred ECCCCCCH
Confidence 99999887
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.30 E-value=9e-12 Score=139.28 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=82.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCC---CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIH---IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~---~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+|+|.+|+|||||+|+|++....... +..+.+ ...+...+. -.+ .........+..
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~-----~~D~~~~e~-~~g----------iTi~~~~~~~~~ 72 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGAS-----QMDWMEQEQ-DRG----------ITITSAATTAAW 72 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-----------------------------------------CCSEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCce-----ecccchhhh-hcC----------ceEeeeeEEEEE
Confidence 4578999999999999999999964321110 111111 000000000 000 000000001111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
. . ..+.||||||+.+ |...+..++..+|++|+|+|+.+ +.+.+...++..+...+.|+++|+||+
T Consensus 73 ~-~--~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilviNK~ 137 (693)
T 2xex_A 73 E-G--HRVNIIDTPGHVD-----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVFVNKM 137 (693)
T ss_dssp T-T--EEEEEECCCCCSS-----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred C-C--eeEEEEECcCCcc-----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEEEECC
Confidence 1 1 4589999999975 45566778899999999999996 778888788888888899999999999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99863
No 191
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.30 E-value=8.2e-13 Score=130.07 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=112.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC---chhhhhhhHH
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF---RPLDKFGNSF 380 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~---~~~~~~~~~~ 380 (551)
++|+++|+||+||||++|+|.|.. ..++..|++|. ...+.+++..+.++||||..+..... +.-+.....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 589999999999999999999987 67899999995 33355678889999999997654210 2222233333
Q ss_pred HhhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
+.. ..+|+. ....+....++.|+|+||+|+. ++ .......+.+.+.+.
T Consensus 79 ~~~-----~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~----------~~--~~~~~~~~~l~~~lg- 140 (256)
T 3iby_A 79 VID-----LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIA----------EH--RGISIDTEKLESLLG- 140 (256)
T ss_dssp HHH-----SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHH----------HH--TTCEECHHHHHHHHC-
T ss_pred Hhh-----CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcC----------Cc--CCcHHHHHHHHHHcC-
Confidence 311 233321 1223334578899999999982 11 111122344555553
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhcc-CCCCCCChHHHHHHhcc
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQI-SPGDFPKVEKMQELLQH 522 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ +++++.+.++ ++ ....|+. .....+.++...+...... ....++.+|..-++|+.
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~~-~~------~~~~y~~--~~e~~i~~i~~~~~~~~~~~~~~~~~~r~~a~~~le~ 210 (256)
T 3iby_A 141 -CSVIPIQAHKNIGIPALQQSLLHC-SQ------KIKPLKL--SLSVAAQQILNDLENQLISKGYKNSFAYYFSRRLAEG 210 (256)
T ss_dssp -SCEEECBGGGTBSHHHHHHHHHTC-CS------CCCCCCC--CCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred -CCEEEEECCCCCCHHHHHHHHHhh-hc------CcccCCH--HHHHHHHHHHHHHhhhcccccccccChhHHHHHHHCC
Confidence 576666 88899 9999999765 11 1113332 2333334444444332200 00136778888788876
Q ss_pred CC
Q psy11743 523 HD 524 (551)
Q Consensus 523 ~d 524 (551)
.+
T Consensus 211 d~ 212 (256)
T 3iby_A 211 DT 212 (256)
T ss_dssp CC
T ss_pred CH
Confidence 43
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.28 E-value=3.9e-12 Score=119.19 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|++|||||||+|+|++..+.. ...|..+.+.... +... |..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~-----------------g~~------------ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVD-----------------GKT------------ 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEET-----------------TEE------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEEC-----------------CEE------------
Confidence 45799999999999999999999987532 1122111111111 1110 100
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||...- ......+...++.+++|+|............++..+. ....|+++|+||
T Consensus 78 ---~~~~i~Dt~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK 143 (191)
T 1oix_A 78 ---IKAQIWDTAGLERY-----------RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143 (191)
T ss_dssp ---EEEEEEEECSCCSS-----------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEECCCCcch-----------hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 12567999998641 1123345578999999999874111111123443333 346789999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .....+.. ..+....+.+||+++.++
T Consensus 144 ~Dl~~~~~~~~~~a~~l~-------~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 144 SDLRHLRAVPTDEARAFA-------EKNGLSFIETSALDSTNV 179 (191)
T ss_dssp GGGGGGCCSCHHHHHHHH-------HHTTCEEEECCTTTCTTH
T ss_pred cccccccccCHHHHHHHH-------HHcCCEEEEEeCCCCCCH
Confidence 998642111 01111111 123345677999888876
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.27 E-value=6.6e-11 Score=132.44 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|..|+|||||+++|+...-.....+ ...+......+...+. ..|.........+....
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g--~v~~g~~~~D~~~~E~-----------~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG--EVHDGAATMDWMEQEQ-----------ERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--ccCCCceeecChhhHH-----------hcCceeeeceEEEEECC
Confidence 4568999999999999999999986431111100 0000000100000000 00000000011111110
Q ss_pred ----CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 134 ----PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 134 ----~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
.-...+.||||||+.+ |...+..++..+|++|+|+|+.. +...+...++..+...+.|+++|+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~ilviN 142 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVD-----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRIAFVN 142 (704)
T ss_pred ccccCCceeEEEEeCCCccc-----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 0014589999999975 66677788899999999999996 7777777777777778899999999
Q ss_pred CCCCCCH
Q psy11743 210 KADMVDH 216 (551)
Q Consensus 210 K~Dl~~~ 216 (551)
|+|+...
T Consensus 143 KiD~~~~ 149 (704)
T 2rdo_7 143 KMDRMGA 149 (704)
T ss_pred CCCcccc
Confidence 9999753
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=7.9e-12 Score=129.02 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=58.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+... ....+..+|++++|+|+.. +-..+ .+...+ ...|.++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~~--------------~~~~~~~aD~vl~V~d~~~-~~~~~--~l~~~~--~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQS--------------EVAVANMVDTFVLLTLART-GDQLQ--GIKKGV--LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSH--------------HHHHHTTCSEEEEEEESST-TCTTT--TCCTTS--GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcH--------------HHHHHHhCCEEEEEECCCC-CccHH--HHHHhH--hhcCCEEEEECCCCcCh
Confidence 46999999997641 1123589999999999874 21111 111111 23689999999999865
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
.............+..+. .....+++.+||++|.|+
T Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCH
Confidence 443222222211121110 112368899999999987
No 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.26 E-value=1.6e-11 Score=125.79 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=88.4
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEEe
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
.+.++|.+++| |+..+.++... ..++......++++++|+||+|+.+++.. .+.+...++.+|. +++++
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-------~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-------RVLMV 198 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-------CEEEC
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-------cEEEE
Confidence 46899999977 55554555442 23333334568899999999999987541 2223344444433 58899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
||.++.++ ++|...+ ..-.++++|++|+||||++|
T Consensus 199 Sa~~~~gl-------------~~L~~~~--------------------------------~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 199 SSHTQDGL-------------KPLEEAL--------------------------------TGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp BTTTTBTH-------------HHHHHHH--------------------------------TTSEEEEECCTTSSHHHHHH
T ss_pred ecCCCcCH-------------HHHHHhc--------------------------------CCCEEEEECCCCccHHHHHH
Confidence 99887765 2222211 13478999999999999999
Q ss_pred HHHhCCC-Cc-ccccCCCc----ccceEEEEecCCCccccCCceeecC
Q psy11743 325 YLLERDF-PG-IHIGPEPT----TDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 325 ~l~~~~~-~~-~~v~~~~~----~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
.|.|... .. -.++..+| +|+...+.+-.....++||||+...
T Consensus 234 ~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 234 ALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 9998752 11 11111112 3443333333344568999998864
No 196
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.26 E-value=2.6e-11 Score=122.27 Aligned_cols=114 Identities=17% Similarity=0.294 Sum_probs=72.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|..|||||||++++.+...+......+||.... +.. +.. .-
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~----------------~~~----------------v~~--~v 46 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS----------------LEH----------------FST--LI 46 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC----------------CEE----------------ECS--SS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeee----------------eEE----------------Ecc--EE
Confidence 48999999999999999988654321111122231110 000 000 13
Q ss_pred CeEEEeCCCCCCCcccccccccchHH---HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH---Hh--CCCCcEEEEEc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTG---VLEWFAERVDRIILLFDAHKLDISDEFRRSIEA---LR--GHDDKIRIVLN 209 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~---~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~---l~--~~~~~vilVlN 209 (551)
.+.+|||||... |.. ....+.++++++++|+|+++ .+......+.++ +. ..+.|+++|+|
T Consensus 47 ~LqIWDTAGQEr-----------f~~~~l~~~~yyr~a~~~IlV~Ditd-~~~~~~~~l~~~l~~~~~~~~~ipillvgN 114 (331)
T 3r7w_B 47 DLAVMELPGQLN-----------YFEPSYDSERLFKSVGALVYVIDSQD-EYINAITNLAMIIEYAYKVNPSINIEVLIH 114 (331)
T ss_dssp CEEEEECCSCSS-----------SCCCSHHHHHHHTTCSEEEEECCCSS-CTTHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred EEEEEECCCchh-----------ccchhhhhhhhccCCCEEEEEEECCc-hHHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 599999999875 211 34567899999999999996 333333333222 22 24689999999
Q ss_pred CCCCCCHH
Q psy11743 210 KADMVDHQ 217 (551)
Q Consensus 210 K~Dl~~~~ 217 (551)
|+|+.+++
T Consensus 115 K~DL~~~~ 122 (331)
T 3r7w_B 115 KVDGLSED 122 (331)
T ss_dssp CCCSSCSH
T ss_pred CcccCchh
Confidence 99998753
No 197
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.25 E-value=4.2e-11 Score=133.80 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|.+|+|||||+|+|+.........+. ..+......+...+. ..|.........+...
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~--v~~~~~~~d~~~~E~-----------~~giTi~~~~~~~~~~- 75 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE--VHEGAATMDFMEQER-----------ERGITITAAVTTCFWK- 75 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET-
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce--ecCCceeccCchhhh-----------hcccccccceEEEEEC-
Confidence 34578999999999999999999964311100000 000000000000000 0000000000011110
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
...+.+|||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+
T Consensus 76 --~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 76 --DHRINIIDTPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp --TEEEEEECCCSSTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECTTS
T ss_pred --CeEEEEEECcCccc-----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCc
Confidence 14589999999965 56677888899999999999996 77788777777787889999999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 142 ~~~ 144 (691)
T 1dar_A 142 TGA 144 (691)
T ss_dssp TTC
T ss_pred ccC
Confidence 864
No 198
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=127.37 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=75.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC------CCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP------EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~------~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+|+|.+|+|||||+|+|++.........+ .+|... ...... +. .
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~-~~~~~~-------------~~-~----------- 90 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQI-EASTVE-------------IE-E----------- 90 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEE-EEEEEC----------------------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeE-EEEEEE-------------ee-c-----------
Confidence 367999999999999999999987643211110 111111 000000 00 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHH----HHHHHHh-------------ccCEEEEEEeCCCCCCChHHHH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTG----VLEWFAE-------------RVDRIILLFDAHKLDISDEFRR 192 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~----~~~~~~~-------------~aD~il~VvDa~~~~~~~~~~~ 192 (551)
......+++|||||+.+.... .+....+.. +...++. ++|++++++++...++...+..
T Consensus 91 ---~~~~~~l~i~DTpG~gd~~~~-~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~ 166 (361)
T 2qag_A 91 ---RGVKLRLTVVDTPGYGDAINC-RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA 166 (361)
T ss_dssp ----CEEEEEEEEC---------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH
T ss_pred ---CCcccceEEEEeccccccCcc-HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH
Confidence 000024899999999653211 000001111 1113332 2357888888743367777767
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
++..+. .+.|+|+|+||+|+....++..... .....- .....+++.+||+++.+
T Consensus 167 ~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~-~i~~~~---~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 167 FMKAIH-NKVNIVPVIAKADTLTLKERERLKK-RILDEI---EEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHTC-S-SCEEEEEECCSSSCHHHHHHHHH-HHHHHT---TCC-CCSCCCC------
T ss_pred HHHHhc-cCCCEEEEEECCCCCCHHHHHHHHH-HHHHHH---HHCCCCEEeCCCcCCCc
Confidence 777664 5789999999999998765543211 221111 12234667789877654
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.23 E-value=1.9e-11 Score=139.39 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=56.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +.+.+...++..+...+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh-----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 4589999999976 55667788899999999999996 777887777666667789999999999986
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=7.8e-11 Score=123.45 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|.+|||||||+|+|++... .+...+.+|......+..- +.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~------------------------------~~- 203 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEV------------------------------SE- 203 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEEC------------------------------SS-
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEe------------------------------cC-
Confidence 346799999999999999999998752 1222222232222211110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
...++++||||+........ .+.......+++++.+++|+|+.. ........+.+.+.. ..+|.++|+|
T Consensus 204 -~~~~~l~DtpGli~~a~~~~----~L~~~fl~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P~ILVlN 277 (416)
T 1udx_A 204 -EERFTLADIPGIIEGASEGK----GLGLEFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALN 277 (416)
T ss_dssp -SCEEEEEECCCCCCCGGGSC----CSCHHHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred -cceEEEEeccccccchhhhh----hhhHHHHHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCCEEEEEE
Confidence 03489999999976322111 121222344678999999999961 221222222222221 2589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+... ...+.+...+.. ...+++.+||+++.++
T Consensus 278 KlDl~~~-~~~~~l~~~l~~-------~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAR-------EGLAVLPVSALTGAGL 312 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHT-------TTSCEEECCTTTCTTH
T ss_pred CCChhhH-HHHHHHHHHHHh-------cCCeEEEEECCCccCH
Confidence 9999876 332222222211 1236889999998887
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.23 E-value=2.5e-11 Score=131.97 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=61.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..++||||||+.+ |...+.+++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 100 ~~iNlIDTPGHvD-----------F~~Ev~raL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 100 RVVNLLDTPGHQD-----------FSEDTYRVLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEEECCCCGGG-----------CSHHHHHHHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred EEEEEEeCCCcHH-----------HHHHHHHHHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 4599999999976 78888999999999999999997 9999999999999999999999999999875
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.23 E-value=8.3e-12 Score=128.11 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=55.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+.. . .....+|++++|+|+.. +-. ...+.... .+.|.++|+||+|+...
T Consensus 149 ~~i~liDTpG~~~~~-----------~---~~~~~aD~vl~Vvd~~~-~~~--~~~l~~~~--~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSE-----------T---EVARMVDCFISLQIAGG-GDD--LQGIKKGL--MEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHH-----------H---HHHTTCSEEEEEECC---------CCCCHHH--HHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchH-----------H---HHHHhCCEEEEEEeCCc-cHH--HHHHHHhh--hcccCEEEEECCCCCCh
Confidence 469999999987521 1 13589999999999974 211 00000011 14678999999999875
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
.............++.+. ....++++++||++|.|+
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 443322212111111111 111357889999999887
No 203
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.18 E-value=4.5e-11 Score=117.71 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=111.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+.++|+++|+||+||||++|+|.+.. ..++..|++|.. ..+..++..+.++||||..+.. +.+.-+.....++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~---~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK---QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG-YSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC-SSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC-CCCHHHHHHHHHH
Confidence 35789999999999999999999987 458888998852 2344567788999999987654 2222222333333
Q ss_pred hhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.. ..+|+. .........++.|+|+||+|+ .+..... ...+.+.+.+.
T Consensus 80 ~~-----~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl----------~~~~~i~--~~~~~l~~~lg-- 140 (258)
T 3a1s_A 80 LK-----GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDE----------AKKTGMK--IDRYELQKHLG-- 140 (258)
T ss_dssp HH-----SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHH----------HHHTTCC--BCHHHHHHHHC--
T ss_pred hh-----cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCC----------CCccchH--HHHHHHHHHcC--
Confidence 21 122221 112233357888999999998 1111111 12344555442
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccC
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHH 523 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
.|++.+ ++|.+ +++++.+.+.........+....|+ ......+.++...+...+ ..++.++..-+.|+..
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~--~~~~~~i~~~~~~~~~~~----~~~~~r~~a~~~le~d 213 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYG--EKVESEIKKVENFLRDKK----LRINPRYFALKYLSGD 213 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCC--HHHHHHHHHHHHHHTTSC----CSSCHHHHHHHHHTTC
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhhccccCCCcccCCc--hhHHHHHHHHHHHHhhcc----cccchHHHHHHHHCCC
Confidence 576666 88999 9999999876531110001111243 334444444444442111 1355677776777763
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.16 E-value=1.3e-10 Score=119.97 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=61.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc-ccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG-KFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~-~~g~~~~~~~~~~~~~~~~ 135 (551)
++|+|+|.+|+|||||+|+|++.. +.+...|.+|.+....+..-+ +..++.+. .++... ..|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~------~~~l~~~~~~~~~~~-------~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLE------DERLYALQRTFAKGE-------RVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECC------CHHHHHHHHHHCBTT-------BCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecC------hHHHHHHHHHhcccc-------cccccC
Confidence 469999999999999999999976 233444444444433322111 10000000 000000 000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-..+.+|||||+..+... +..+.......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~----~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHK----GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCS----SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccc----cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 035899999999864322 11233455567899999999999974
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.7e-10 Score=118.34 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=58.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|+|.+|||||||+|+|++.. +.+...|.+|.+....... +++..++.+.+. .-|....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~------~~~~r~~~l~~~-----------~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVP------MPDPRLDALAEI-----------VKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEE------CCCHHHHHHHHH-----------HCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEe------cCCcccceeeee-----------eccccee
Confidence 679999999999999999999987 3344445445443221111 111000000000 0000000
Q ss_pred -cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 137 -KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 137 -~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.+|||||+..+..... .+.......++++|++++|+|+.+
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~----gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGE----GLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHG----GGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccc----hHHHHHHHHHHhcCeEEEEEecCC
Confidence 3489999999986432111 122233456789999999999984
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.12 E-value=4e-11 Score=132.91 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=61.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..++||||||+.+ |...+..++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 67 ~~iNlIDTPGH~D-----------F~~Ev~raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 67 TKVNIIDTPGHMD-----------FLAEVYRSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CBCCCEECCCSSS-----------THHHHHHHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 4689999999986 88889999999999999999997 9999999999999999999999999999864
No 207
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.09 E-value=3e-10 Score=112.60 Aligned_cols=188 Identities=11% Similarity=0.100 Sum_probs=107.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec-CCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
.++|+++|+|||||||++|.|.+.. ..++..||+|. .....+. +..+.++||||..+-. +.+.-+.....++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~---~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN---QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS-PYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC---CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS-CSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC-CCChHHHHHHHHHhc
Confidence 5689999999999999999999986 46788899885 3333333 6678899999987643 122222333333321
Q ss_pred hhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
..+|+. .........++.|+|+||+|+. ++. ........+.+.+ ..|
T Consensus 79 -----~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~----------~~~--~~~~~~~~l~~~l--g~~ 139 (272)
T 3b1v_A 79 -----QRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL----------DGQ--GKKINVDKLSYHL--GVP 139 (272)
T ss_dssp -----TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHH----------HHT--TCCCCHHHHHHHH--TSC
T ss_pred -----CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhC----------CcC--CcHHHHHHHHHHc--CCC
Confidence 122221 1122233578889999999982 111 1111234444444 246
Q ss_pred hhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccC
Q psy11743 450 SVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHH 523 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
++.+ ++|.+ +++++.+.+.+. .....++.........+.|..+...+...++ .++.++..-++|+..
T Consensus 140 vi~~SA~~g~gi~el~~~i~~~~~---~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~----~~~~r~~a~~lle~d 209 (272)
T 3b1v_A 140 VVATSALKQTGVDQVVKKAAHTTT---STVGDLAFPIYDDRLEAAISQILEVLGNSVP----QRSARFYAIKLFEQD 209 (272)
T ss_dssp EEECBTTTTBSHHHHHHHHHHSCT---TTCCSCCCCCCCHHHHHHHHHHHHHHGGGSC----STTHHHHHHHHHTTC
T ss_pred EEEEEccCCCCHHHHHHHHHHHHh---hccCCCccCCCCHHHHHHHHHHHHHHhhccc----ccchHHHHHHHHCCC
Confidence 6655 88888 999999876432 1111111111233444444445444421111 123677766777763
No 208
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.09 E-value=1.9e-10 Score=109.83 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EE---ecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VM---YDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~---~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++|+++|.+|+||||++|+|++.... ..++..+++|+... .. .++..+.++||||+..+.......+.|.. +
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL-AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ-L 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS-SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH-H
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH-H
Confidence 5689999999999999999999998621 46778888887443 22 24678899999998776544333333322 2
Q ss_pred HhhhhhhccccC-------cccc---------cccccccceeEEEecccCC
Q psy11743 381 LNRFQCSLVNSP-------VLKG---------KVLQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~~~-------~~~~---------~~~~~~~~~~v~~~~~wd~ 415 (551)
+.........+| ...+ ..+....++.++|+||+|+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 222222222222 1111 2222356788999999998
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=3.3e-10 Score=118.38 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=83.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC---CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG---PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~---~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+|++|+|||||+|.|+|..+.+.... ++.+...+..+... ..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-------------------------------~~ 92 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-------------------------------SN 92 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-------------------------------Cc
Confidence 399999999999999999999864332221 11111111111110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccc--c-chHHHHHHHHh-------------c--cC-EEEEEEeCCCCCCChHHHHHHH
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRG--Y-DFTGVLEWFAE-------------R--VD-RIILLFDAHKLDISDEFRRSIE 195 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~--~-~~~~~~~~~~~-------------~--aD-~il~VvDa~~~~~~~~~~~~l~ 195 (551)
+...++++||||+........... . .+......++. . +| ++++|+|+.. +++..+.++++
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~-~l~~~Dieilk 171 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH-SLKSLDLVTMK 171 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHHHHHHHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC-CCCHHHHHHHH
Confidence 113589999999975321100000 0 01112222211 1 23 4667777775 88899888988
Q ss_pred HHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 196 ALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 196 ~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+. .+.++|+|+||+|.+++.++..........+. ..+.+++++|.
T Consensus 172 ~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~----~~gi~I~~is~ 217 (427)
T 2qag_B 172 KLD-SKVNIIPIIAKADAISKSELTKFKIKITSELV----SNGVQIYQFPT 217 (427)
T ss_dssp HTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB----TTBCCCCCCC-
T ss_pred HHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHH----HcCCcEEecCC
Confidence 887 68899999999999988776543332222232 23456677774
No 210
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.08 E-value=5.8e-10 Score=103.65 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
...++|+++|.+|+||||++|+|++.. ...+++.+++|+.......+..+.++||||+.........-+.+.. +...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR-LVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH-HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH-HHHH
Confidence 356799999999999999999999997 3677788888886666555678899999997654433222233322 1111
Q ss_pred hhhhccccCc-------ccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh-
Q psy11743 384 FQCSLVNSPV-------LKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK- 446 (551)
Q Consensus 384 ~~~~~~~~~~-------~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~- 446 (551)
.......+|+ ..+ .......++.++|+||+|+.-. ...+...+.+.+.+..
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM------------SERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHHSS
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh------------HHHHHHHHHHHHHHhhc
Confidence 1111111121 111 1222346788999999998311 1112233444444432
Q ss_pred -ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 -DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 -~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ ++|.+ +++++.+.+..
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 2355555 78888 88888887643
No 211
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.08 E-value=2.5e-10 Score=113.16 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=112.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
.++|+++|++|+||||++|.|.|.. ..++..|++|.. ..+.+++..+.++||||..+.. ....-+.....++.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR---QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT-AHSIDELIARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC---EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCC-SSCHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccc-cCCHHHHHHHHhhh
Confidence 4689999999999999999999987 478889998852 3355677889999999988643 22222222222221
Q ss_pred hhhhhccccCccc--------------cccccccc-ceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 383 RFQCSLVNSPVLK--------------GKVLQTPE-VARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 383 ~~~~~~~~~~~~~--------------~~~~~~~~-~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
...+|+.. -....... ++.++|+||+|+ .+...... ....+.+.+.
T Consensus 79 -----~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl----------~~~~~~~~--~~~~l~~~lg-- 139 (271)
T 3k53_A 79 -----DGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDL----------LKKKGAKI--DIKKMRKELG-- 139 (271)
T ss_dssp -----TTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHH----------HHHHTCCC--CHHHHHHHHS--
T ss_pred -----ccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhc----------CcccccHH--HHHHHHHHcC--
Confidence 12222210 11112233 888999999998 22211111 2344555553
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhcc
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQH 522 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ ++++..+...+.........+.-++ ....+.+.++...+. +.. ....|+..+..-+.|+.
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~--~~~e~~~~~l~~~~~-~~~-~~~~~~~~~~a~~~le~ 213 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD--EDIEREIKHISELLR-GTP-LAEKYPIRWLALKLLQR 213 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC--HHHHHHHHHHHHHHH-SSS-STTTSCHHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC--HHHHHHHHHHHHHHh-hcc-cccccChhHHHHHHHCC
Confidence 566555 88899 9999999887643222112222233 233333333433332 221 23468888877676665
No 212
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.08 E-value=1e-10 Score=117.23 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=25.6
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|+|..+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 3568999999999999999999999975
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.08 E-value=1.4e-11 Score=127.56 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=78.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc-----CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~-----~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
...|+++|.+|+|||||+|+|++. ....+...|++|++..... . +
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~-~------------------~----------- 211 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP-L------------------E----------- 211 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE-C------------------S-----------
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE-e------------------C-----------
Confidence 467999999999999999999997 4444455566555443221 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+.++||||+.+... ...... .+.+.... .+.|.+++++++.. .+.......++.+...+.|+++++
T Consensus 212 ------~~~~liDtPG~~~~~~--~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~-~~~~g~l~~l~~l~~~~~~~~~v~ 281 (369)
T 3ec1_A 212 ------SGATLYDTPGIINHHQ--MAHFVD-ARDLKIITPKREIHPRVYQLNEGQ-TLFFGGLARLDYIKGGRRSFVCYM 281 (369)
T ss_dssp ------TTCEEEECCSCCCCSS--GGGGSC-TTTHHHHSCSSCCCCEEEEECTTE-EEEETTTEEEEEEESSSEEEEEEE
T ss_pred ------CCeEEEeCCCcCcHHH--HHHHHh-HHHHHHHhcccccCceEEEEcCCc-eEEECCEEEEEEccCCCceEEEEe
Confidence 3489999999986431 111111 11222222 78999999999953 111111122444556678999999
Q ss_pred cCCCCCCHHH
Q psy11743 209 NKADMVDHQQ 218 (551)
Q Consensus 209 NK~Dl~~~~~ 218 (551)
||+|.++..+
T Consensus 282 ~k~d~~~~~~ 291 (369)
T 3ec1_A 282 ANELTVHRTK 291 (369)
T ss_dssp CTTSCEEEEE
T ss_pred cCCccccccc
Confidence 9999986543
No 214
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.08 E-value=3.1e-10 Score=105.87 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
..++|+++|.+|+||||++|.|.+..+. ..++..+++|+.......+..+.++||||+..........+.|... ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRM-IETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHH-HHHH
Confidence 5789999999999999999999998642 5667778888754433335579999999987665433323333321 1111
Q ss_pred hhhcccc-------Ccccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH--h
Q psy11743 385 QCSLVNS-------PVLKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR--K 446 (551)
Q Consensus 385 ~~~~~~~-------~~~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~ 446 (551)
......+ |+..+ .......++.++|+||+|+.-. .......+.+.+.+. .
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK------------GKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHTCCT
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh------------HHHHHHHHHHHHHHcccC
Confidence 1111111 22111 1222356788999999998311 111112334444443 1
Q ss_pred ccchhhh--ccchH-HHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
..+.+.+ ++|.+ +++++.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCHHHHHHHHHHH
Confidence 3344444 77888 8888877653
No 215
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=7.5e-10 Score=116.04 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCC-C----CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG-P----EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~-~----~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
.+.|+|+|++|+|||||+|.|+|...+....+ . .+|+ ....+.+ .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~-~~~~i~~-----------------------------v 80 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-QVEQSKV-----------------------------L 80 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CC-EEEEEEC-----------------------------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccce-eeeeEEE-----------------------------E
Confidence 36789999999999999999999875211110 0 0111 0000000 0
Q ss_pred cC-CCCccCeEEEeCCCCCCCcccccccccchHH-------HHHHH-----------H--hccCEEEEEEeCCCCCCChH
Q psy11743 131 VN-SPVLKGISIVDTPGILSGEKQRVDRGYDFTG-------VLEWF-----------A--ERVDRIILLFDAHKLDISDE 189 (551)
Q Consensus 131 ~~-~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-------~~~~~-----------~--~~aD~il~VvDa~~~~~~~~ 189 (551)
+. ..+...++++||||+...... ...+.. ....+ + .++|++|++++++..++...
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~----~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp ------CEEEEEEECC---------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred EecCCcccceeeeechhhhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 00 011135899999999753210 000111 11111 1 33556777777752267787
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 190 FRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 190 ~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
+..++..+.. +.++|+|+||+|++...++.
T Consensus 157 d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 157 DIEFMKRLHE-KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHTT-TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHhc-cCcEEEEEEcccCccHHHHH
Confidence 7778888865 78999999999999876554
No 216
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.06 E-value=6.1e-11 Score=132.01 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 523 HDFTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 523 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
+|.+..+.+++.++|+|.+.+.++||.|
T Consensus 289 tDr~g~~~LaEiLrEkL~~hi~~ELP~l 316 (772)
T 3zvr_A 289 ADRMGTPYLQKVLNQQLTNHIRDTLPGL 316 (772)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHhhCccH
Confidence 6788889999999999999999999984
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=3.7e-11 Score=124.45 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC------CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF------PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~------~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...|+++|.+|+|||||+|+|++... ..+...|++|++..... . +
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~-~------------------~---------- 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP-L------------------D---------- 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE-S------------------S----------
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE-e------------------c----------
Confidence 46899999999999999999999742 22334444444433210 0 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..+.++||||+.+... +..... .+.+... ....+.+++++|+.. .........++.+...+.|+++|
T Consensus 211 -------~~~~liDtPG~~~~~~--~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~-~~~~g~l~~~d~l~~~~~~~~~v 279 (368)
T 3h2y_A 211 -------EESSLYDTPGIINHHQ--MAHYVG-KQSLKLITPTKEIKPMVFQLNEEQ-TLFFSGLARFDYVSGGRRAFTCH 279 (368)
T ss_dssp -------SSCEEEECCCBCCTTS--GGGGSC-HHHHHHHSCSSCCCCEEEEECTTE-EEEETTTEEEEEEESSSEEEEEE
T ss_pred -------CCeEEEeCCCcCcHHH--HHHHhh-HHHHHHhccccccCceEEEEcCCC-EEEEcceEEEEEecCCCceEEEE
Confidence 2489999999987431 111111 2233332 367899999999852 11111112244455667899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcc
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLG 231 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~ 231 (551)
+||+|.++..+.......+...+|
T Consensus 280 ~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 280 FSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp ECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred ecCccccccccHHHHHHHHHHHhC
Confidence 999999876544443333333344
No 218
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=9.3e-10 Score=110.77 Aligned_cols=72 Identities=11% Similarity=-0.017 Sum_probs=40.2
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH---HHHHHHHHcccccCCCCceEEEecccC
Q psy11743 172 VDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFW 248 (551)
Q Consensus 172 aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~ 248 (551)
+++++++.++...++...+.+++..+. ...++++|+||+|+....++.. ......... ..+++.+||++
T Consensus 127 a~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~-------~~~~~e~Sa~~ 198 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH-------NIKIYHLPDAE 198 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHT-------TCCCCCCC---
T ss_pred hhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHc-------CCeEEecCCcc
Confidence 455777777653247777666666664 3578999999999997654321 111222111 23556789988
Q ss_pred CCCC
Q psy11743 249 DQPL 252 (551)
Q Consensus 249 g~~~ 252 (551)
+ ++
T Consensus 199 ~-~v 201 (301)
T 2qnr_A 199 S-DE 201 (301)
T ss_dssp ----
T ss_pred c-cc
Confidence 8 76
No 219
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.04 E-value=2e-10 Score=117.43 Aligned_cols=97 Identities=21% Similarity=0.127 Sum_probs=53.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.... . .....+|++++|+|+.. +- ....+...+. ..+.++|+||+|+.+.
T Consensus 148 ~~~iliDT~Gi~~~~----------~----~v~~~~d~vl~v~d~~~-~~--~~~~i~~~i~--~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 148 FDVILVETVGVGQSE----------T----AVADLTDFFLVLMLPGA-GD--ELQGIKKGIF--ELADMIAVNKADDGDG 208 (337)
T ss_dssp CCEEEEEECSSSSCH----------H----HHHTTSSEEEEEECSCC---------CCTTHH--HHCSEEEEECCSTTCC
T ss_pred CCEEEEECCCCCcch----------h----hHHhhCCEEEEEEcCCC-cc--cHHHHHHHHh--ccccEEEEEchhccCc
Confidence 469999999997521 1 12478999999999863 21 1100100011 2356888899998653
Q ss_pred HHHHH-HHHHHHHHcccccC---CCCceEEEecccCCCCC
Q psy11743 217 QQLMR-VYGALMWSLGKVLQ---TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~-~~~~~~~~l~~l~~---~~~~~~v~iSa~~g~~~ 252 (551)
..... ........+..+.. ...++++++||+++.|+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH
Confidence 32211 11111111222111 11357889999998887
No 220
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.02 E-value=2.1e-10 Score=113.96 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=91.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCC---Cchhhhhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQ---FRPLDKFGN 378 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~---~~~~~~~~~ 378 (551)
+.++|+++|++|+||||++|+|.|.. ..++..|++|.. ....+.+..+.++||||..+.... .+.-+.+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~---~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR---QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC---EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 35789999999999999999999997 588999998852 335556788999999999875411 111122222
Q ss_pred HHHhhhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 379 SFLNRFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.++ ....+|+.. -..+....++.|+|+||+|+. +. .......+.+.+.+
T Consensus 79 ~~~-----~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~----------~~--~~~~~~~~~l~~~l 141 (274)
T 3i8s_A 79 HYI-----LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA----------EK--QNIRIEIDALSARL 141 (274)
T ss_dssp HHH-----HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHH----------HH--TTEEECHHHHHHHH
T ss_pred HHH-----hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccch----------hh--hhHHHHHHHHHHhc
Confidence 222 122333211 122233468889999999982 11 11111234455545
Q ss_pred Hhccchhhh--ccchH-HHHHHHHHHH
Q psy11743 445 RKDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 445 ~~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
. .|++.+ ++|.+ +++++.+.+.
T Consensus 142 g--~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 142 G--CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp T--SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred C--CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3 566666 88999 9999888653
No 221
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.01 E-value=6.3e-10 Score=109.19 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=44.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHH----HHHhCCCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSI----EALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l----~~l~~~~~~vilVlNK~D 212 (551)
.+.||||||..+... .. .....+...+.. +++++|+|+.. ....... ... ......+.|+++|+||+|
T Consensus 110 d~iiiDtpG~~~~~~--~~---~l~~~~~~~~~~-~~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMETFL--FH---EFGVRLMENLPY-PLVVYISDPEI-LKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHHHH--HS---HHHHHHHHTSSS-CEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred CEEEEeCCCccchhh--hh---hhHHHHHHHHhh-ceEEeccchhh-hcCHHHHHHHHHHHHHHhcccCCCeEEEEeccc
Confidence 699999999864211 00 011222234456 89999999874 3333321 111 122234689999999999
Q ss_pred CCCHHH
Q psy11743 213 MVDHQQ 218 (551)
Q Consensus 213 l~~~~~ 218 (551)
+.+..+
T Consensus 183 ~~~~~~ 188 (262)
T 1yrb_A 183 LLSEEE 188 (262)
T ss_dssp GCCHHH
T ss_pred cccccc
Confidence 987643
No 222
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.01 E-value=8.8e-10 Score=123.69 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=61.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
.++||||||+.+ |...+..++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 86 ~iNlIDTPGHvD-----------F~~Ev~~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 86 RVNVIDTPGHVD-----------FTIEVERSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEECCCSCTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEEEeCCCCcc-----------cHHHHHHHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 499999999987 88889999999999999999997 9999999999999999999999999999874
No 223
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.98 E-value=2.7e-10 Score=115.12 Aligned_cols=28 Identities=32% Similarity=0.653 Sum_probs=25.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...|+|+++|.+|+||||++|+|+|..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3568999999999999999999999975
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=5.9e-09 Score=103.13 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=79.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~~ 135 (551)
+.++|+|++|+|||||+|.|+|...+.. + .+. ..+. .++... .......... ..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G------~i~--~~g~---~i~~~~-----------~~~~i~~v~q~~~~ 58 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--A------SSW--NREE---KIPKTV-----------EIKAIGHVIEEGGV 58 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------------------CCCCC-----------SCCEEEESCC----
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--C------ccc--cCCc---ccCcce-----------eeeeeEEEeecCCC
Confidence 6799999999999999999999764211 0 000 0000 000000 0000000000 111
Q ss_pred ccCeEEEeCCCCCCCcccccc--cccch-HHHHHHH--------------HhccCEEEEEEeCCCCCCChHHHHHHHHHh
Q psy11743 136 LKGISIVDTPGILSGEKQRVD--RGYDF-TGVLEWF--------------AERVDRIILLFDAHKLDISDEFRRSIEALR 198 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~--~~~~~-~~~~~~~--------------~~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 198 (551)
...++++|+||+......... .-.++ ....... +.++++.++++|....++...+.+++..+.
T Consensus 59 ~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~ 138 (270)
T 3sop_A 59 KMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS 138 (270)
T ss_dssp CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH
T ss_pred cCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH
Confidence 245899999999753221100 00000 0111111 234799999999764488999999999998
Q ss_pred CCCCcEEEEEcCCCCCCHHHHHH
Q psy11743 199 GHDDKIRIVLNKADMVDHQQLMR 221 (551)
Q Consensus 199 ~~~~~vilVlNK~Dl~~~~~~~~ 221 (551)
+. .++++|+||+|.+..+++..
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp TT-SEEEEEETTGGGSCHHHHHH
T ss_pred hc-CcEEEEEeccccCCHHHHHH
Confidence 77 99999999999998776544
No 225
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.97 E-value=1.9e-10 Score=118.51 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=25.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
..|+|+++|.+|+||||++|+|+|..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 568999999999999999999999875
No 226
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.96 E-value=2.3e-10 Score=109.29 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=53.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||+|..... . .++ ..++.+++|+|+.. +.... ...... .+.|.++|+||+|+.+.
T Consensus 109 ~d~iiidt~G~~~~~-~----~~~---------~~~~~~i~vvd~~~-~~~~~-~~~~~~---~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICP-V----DFD---------LGENYRVVMVSVTE-GDDVV-EKHPEI---FRVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGG-G----GCC---------CSCSEEEEEEEGGG-CTTHH-HHCHHH---HHTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCC-c----hhc---------cccCcEEEEEeCCC-cchhh-hhhhhh---hhcCCEEEEecccCCcc
Confidence 358999999963211 0 011 14678999999985 32221 122222 35789999999998643
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. +..+ .......+ .+..+++.+||++|.|+
T Consensus 170 ~~~~~~~-~~~~~~~~-----~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 170 VGADVEK-MKADAKLI-----NPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp HTCCHHH-HHHHHHHH-----CTTSEEEECBTTTTBTH
T ss_pred hhhHHHH-HHHHHHHh-----CCCCeEEEeecCCCCCH
Confidence 1 1111 12222222 13457889999998887
No 227
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.95 E-value=1.2e-09 Score=116.86 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=91.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceee-cCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVV-DPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~-~~~~~~~~~~~~~~~~~ 381 (551)
+++|+++|.|||||||++|+|.+.+ ...++..|+||+ ...+.+++..+.++||||+. ... ..+++++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~---~~ve~~gi--- 314 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN---DLVERLGI--- 314 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC---TTCCCCCH---
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch---hhHHHHHH---
Confidence 5789999999999999999999997 367899999996 34466788889999999997 432 33444443
Q ss_pred hhhhhhccccCc-------cccccccc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPV-------LKGKVLQT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~-------~~~~~~~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+ ..+.+.++ ...+.++|+||||++.. .. .+.+.+.+...
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~------------~~----~~~~~~~~~~~ 378 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK------------IN----EEEIKNKLGTD 378 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC------------CC----HHHHHHHHTCS
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc------------cC----HHHHHHHhcCC
Confidence 222223333432 22222222 24678999999999321 01 12222223222
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.|.+.+ ++|.+ +++++.+.+.+
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555 88888 99999988754
No 228
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.94 E-value=3.7e-09 Score=112.82 Aligned_cols=142 Identities=14% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
..++|+++|.|||||||++|+|++.+ ...++..|+||+. ..+..++.++.++||||+.+.. ..++.++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~---~~ve~~gi--- 303 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE--RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG---EEIEHEGI--- 303 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch---hHHHHHHH---
Confidence 35789999999999999999999987 3678999999973 3466688889999999997633 23344432
Q ss_pred hhhhhhccccCcc-------ccccc----cc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVL-------KGKVL----QT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA 443 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~~----~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (551)
.++...+..+|+. .+.+. .+ ..++.++|+||+|++-... . ..+.+.+.
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~------------~--~~~~l~~~ 369 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------------A--LIRAIADG 369 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTH------------H--HHHHHHHH
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccc------------h--hHHHHHhc
Confidence 3444455555542 22222 00 2477899999999932110 0 01112221
Q ss_pred HHhccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 444 LRKDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 444 l~~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+.|.+.+ ++|.+ +++++.+.+...
T Consensus 370 --~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 --TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 13455555 88999 999999988664
No 229
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.93 E-value=9.9e-09 Score=111.59 Aligned_cols=245 Identities=37% Similarity=0.550 Sum_probs=148.8
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC------------------------------
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE------------------------------ 352 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~------------------------------ 352 (551)
....++|+++|.+|+||||++|+|++..+.+.+++..|+|++...+.+++
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45678999999999999999999999987556899999998755444332
Q ss_pred ------------CCccccCCceeecCCCC--Cch--hhhhhhHHHhhhhhhccccCccc-c---------ccccccccee
Q psy11743 353 ------------REGSVPGNALVVDPKKQ--FRP--LDKFGNSFLNRFQCSLVNSPVLK-G---------KVLQTPEVAR 406 (551)
Q Consensus 353 ------------~~~~l~dt~gi~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~ 406 (551)
.++.|+||||+.++... ... .......++.++...+.=.|+.. + ........+.
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 36889999999874321 111 11112222222211111111111 1 1122234667
Q ss_pred EEEecccCCCCccchhhhhhhh--------------------------hc--cChhhHH---HHHHHHHHhccchhhh-c
Q psy11743 407 VYIGSFWDQPLVHDVNRRLFED--------------------------RS--STSNSVQ---AYIISALRKDMPSVFG-K 454 (551)
Q Consensus 407 v~~~~~wd~~~~~~~~~~l~~~--------------------------~~--~~~~~~~---~~~~~~l~~~~~~~~~-~ 454 (551)
++|+||+|+.-. .+...+... .. .....+. +.++..+ ...|.-.. .
T Consensus 222 ilVlNK~Dl~~~-~el~~~~~~l~~s~~~i~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~E~e~l~~~l-~elP~~~~v~ 299 (550)
T 2qpt_A 222 RVVLNKADMVET-QQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDI-QGLPRHAALR 299 (550)
T ss_dssp EEEEECGGGSCH-HHHHHHHHHHHHHHHHHHCCSSCCCEEESCCSSSCCSSCTTHHHHHHHHHHHHHHH-HTTGGGHHHH
T ss_pred EEEEECCCccCH-HHHHHHHHHhhcchhheeechHhhhhccccCCCCcccCCCCHHHHHHHHHHHHHHh-hhccHHHHHH
Confidence 999999998422 221111100 00 0000011 2333333 33343221 1
Q ss_pred ----cchHHHHHHHHHHHHHHHhhhhccCccccchHH---HhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCC
Q psy11743 455 ----EGKKKELIKKLDEIYKQIQREYQISPVFGKKKE---LIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTK 527 (551)
Q Consensus 455 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 527 (551)
-.++...+.-...++.+. ..+++.++|+++. ..+.|..+++++...++++.+|||+.+.+++.+...||+.
T Consensus 300 ~i~~~~~~~~~~~I~a~I~v~~--~sqk~i~iGk~g~~~~li~~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~ 377 (550)
T 2qpt_A 300 KLNDLVKRARLVRVHAYIISYL--KKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTK 377 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHSCSSSCHHHHHHHHHHTHHHHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGG
T ss_pred HHHHHhccCCeEEEEEEEEEee--cccceeEECCchHHHHHHHhHHHHHHHHHHHhCCCccccCCHHHHHhhhhhCChhh
Confidence 001112222222344322 3356668997554 4456677999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHhHhhhhhcC
Q psy11743 528 FQTLRPRLIEVADKMLAEDIAHLL 551 (551)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~ 551 (551)
|+.+++++.+.|+.++++|||+|+
T Consensus 378 f~~l~~~~~~~l~~~~~~d~~~l~ 401 (550)
T 2qpt_A 378 FHSLKPKLLEALDDMLAQDIAKLM 401 (550)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHhhhHhhHHHHH
Confidence 999999999999999999999874
No 230
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.85 E-value=4.7e-09 Score=102.48 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC-cccc---eEEEEecCCCccccCCceeecCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-TTDR---FIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-~~tr---~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..+++|+++|.+|+||||++|+|++.... ..+..+ ++|+ .....+++..+.++||||+.++.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~--~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRF--FSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCc--cccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 45689999999999999999999999743 223223 3553 23355678889999999998654
No 231
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.84 E-value=3.8e-09 Score=112.31 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...+|+++|.||+||||++|+|++.+ ...++..++||+ ...+..++.++.++||||+.+.. ..++.++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~---~~ve~~gi--- 294 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS---DQVEKIGV--- 294 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch---hHHHHHHH---
Confidence 35789999999999999999999987 356888899986 23466788899999999997633 33444443
Q ss_pred hhhhhhccccCccc-------cccccc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVLK-------GKVLQT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~~-------~~~~~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+.. +.+..+ ...+.++|+||+|++-.... . .. +.+...
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~-~--------~~--------~~~~~~ 357 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLI-T--------SL--------EYPENI 357 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGS-T--------TC--------CCCTTC
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhh-H--------HH--------HHhccC
Confidence 44445555666421 211111 23578999999998321110 0 00 001122
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.|.+.+ ++|.+ +++++.+.+..
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 78888 88888887755
No 232
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.82 E-value=5e-09 Score=102.84 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=47.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCc-ccc---eEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-TDR---FIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~-~tr---~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|+|++... ...+..++ +|+ .....+++..+.++||||+.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQA--FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCC--SCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 467999999999999999999999873 33444454 554 23355678899999999998754
No 233
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.81 E-value=1.2e-08 Score=109.16 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=43.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcE-EEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKI-RIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~v-ilVlNK~Dl 213 (551)
..++||||||....... +...+... +-.+|.+++|+|+.. +.. ....+..+.+. .|+ .+|+||+|.
T Consensus 184 ~DvvIIDTpG~~~~~~~-------l~~el~~~~~~i~pd~vllVvDa~~-g~~--~~~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDS-------LFEEMLQVANAIQPDNIVYVMDASI-GQA--CEAQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp CCEEEEEECCCCTTCHH-------HHHHHHHHHHHHCCSEEEEEEETTC-CTT--HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred CcEEEEeCCCCcccchh-------HHHHHHHHHhhhcCceEEEEEeccc-ccc--HHHHHHHHHhh-cCceEEEEeCCcc
Confidence 46999999999753211 22222222 237999999999985 433 33444444432 564 899999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 253 ~~~ 255 (504)
T 2j37_W 253 HAK 255 (504)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 234
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.80 E-value=7.6e-09 Score=96.50 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=41.4
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.....++|+++|.+||||||++|.|.+..+..+...+..+.+ ...+...+..+.++||||...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VETFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EEEEEETTEEEEEEEECCSGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EEEEEeCCEEEEEEECCCCHh
Confidence 344567999999999999999999999875322223333322 222345677788999999753
No 235
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.80 E-value=9.1e-09 Score=99.69 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC--cccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP--TTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~--~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
..++|+++|.+|+||||++|.|++..+ ..+..+ ++|+ .....+++..+.++||||+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV---FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc---CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 467999999999999999999999874 333333 4453 233556788899999999987653
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.79 E-value=5.3e-09 Score=95.08 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=41.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
..+++++|.+||||||++|.|.+..+ .++..|++|. ...+.+++..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV---YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS---SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe---eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 46899999999999999999998763 4566677663 2335556778899999998753
No 237
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.77 E-value=6e-09 Score=107.47 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=70.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
+...+|+|+|.||||||||+|+|.+.. +.++++|.||+. ..+.+.+.++.|+||||+...... ....++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~---~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~---~~~~g~~- 142 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTE---SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD---GRGRGKQ- 142 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBC---CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHH-
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh---hhHHHHH-
Confidence 344689999999999999999999987 788999999963 236678999999999999864322 1223333
Q ss_pred HhhhhhhccccCcccccc--------------------cccccceeEEEecccCC
Q psy11743 381 LNRFQCSLVNSPVLKGKV--------------------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~v~~~~~wd~ 415 (551)
+...++.+|++.-.. ..-.+.+.+++.||+|.
T Consensus 143 ---~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 143 ---VIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp ---HHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ---HHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 344555666432110 11123456888999997
No 238
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.77 E-value=1.7e-08 Score=93.22 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=42.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++|+++|.+|+||||++|.|.+.. ...+..|++|+. ...... .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSSSSSTTCTTSCEEEEET--TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---CccCCCCCccceeEEEecC--CEEEEECCCcccc
Confidence 579999999999999999999987 356667777753 333333 7889999997543
No 239
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.75 E-value=1.1e-08 Score=93.63 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=77.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|.|.+..+. ....++++. ...+..++ ..+.++||||......... .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS-------T 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG-------G
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH-------H
Confidence 4579999999999999999999988742 333444442 22344455 4577889999554321111 1
Q ss_pred HHhhhhhhccccCccc------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 380 FLNRFQCSLVNSPVLK------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
++..+...+.=.|+.. ........++.++|+||+|++- ...... .....+...+ .
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------~~~~~~-~~~~~~~~~~--~ 144 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE----------RKVVET-EDAYKFAGQM--G 144 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG----------GCCSCH-HHHHHHHHHH--T
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch----------hcccCH-HHHHHHHHHc--C
Confidence 1111100000001110 0111224578899999999831 111110 1112222222 3
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
+|.+.+ ++|.+ +++++.+.+....
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555 88888 9999998876543
No 240
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.75 E-value=1.2e-08 Score=97.97 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~ 365 (551)
...++|+++|.+||||||++|+|++..+ .++..+++|+... ....+..+.++||||..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV---DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE---EEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 3568999999999999999999999874 3566777776443 234567788999999865
No 241
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.74 E-value=6.4e-09 Score=96.63 Aligned_cols=63 Identities=17% Similarity=0.019 Sum_probs=40.6
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+.++|+++|.+|+||||++|.|.+.........+..+. ....+.+++..+.++||||...
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSSCEEEEEEECCSTT
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECCEEEEEEECCCCHH
Confidence 34567899999999999999999999876211111111111 1233455678889999999543
No 242
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.74 E-value=3.3e-08 Score=90.27 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+.++|+++|.+|+||||++|+|.+..+. ....++++. ...+.+++..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT---EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS---CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc---cCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 36789999999999999999999998742 333444442 333556778888999999654
No 243
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.74 E-value=2.1e-08 Score=90.49 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=35.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||++|.|.+... ...++.+++++.......+. .+.+.||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc--cCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 46899999999999999999998763 46667777776544555444 456789999654
No 244
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.8e-08 Score=92.27 Aligned_cols=59 Identities=20% Similarity=0.040 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. .....++++. ......++. .+.++||||...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFL--AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4579999999999999999999998752 2233344432 222344443 577889999543
No 245
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.74 E-value=4.1e-08 Score=89.29 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..++|+++|.+||||||++|.|.+..+ ....+.++++. ...+..++. .+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE--RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC--ccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 457899999999999999999999874 34445566664 333445544 567899999764
No 246
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.74 E-value=2.7e-08 Score=91.75 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=78.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
++.+|+++|.+|+||||++|+|.+..+. ...+.|+. ......++.. +.++||||...... ....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC----CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHH
Confidence 3578999999999999999999988742 22223332 2334444444 56799999654221 1112
Q ss_pred HHhhhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+.. ........++.++|+||+|++.. .........+...+
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~- 138 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR------------TVDTKQAQDLARSY- 138 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC------------SSCHHHHHHHHHHH-
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc------------ccCHHHHHHHHHHc-
Confidence 2222111111111111 01112246788999999998411 11111223333333
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
..|.+.+ ++|.+ ++++..+.+.+...+
T Consensus 139 -~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 139 -GIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp -TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 2455555 88889 999998887664433
No 247
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=105.12 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=51.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc-cccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK-FGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~-~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+|+|++... .+...|.+|.+....... +++..++.+.+ +...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~------v~~~r~~~l~~~~~p~----------- 81 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVP------VPDERFDFLCQYHKPA----------- 81 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEE------CCCHHHHHHHHHHCCS-----------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEE------ECCccceeeccccCcc-----------
Confidence 3457899999999999999999999875 344445555444332211 11111100000 0000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
......+.+|||||+..+... +..+.......++++|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~----~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHN----GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccch----hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 000034899999999864321 11233345667899999999999974
No 248
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.70 E-value=1.9e-08 Score=92.97 Aligned_cols=147 Identities=13% Similarity=-0.005 Sum_probs=84.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
++++++++|.+||||||++|.|.+.. ..++..|++|. ...+..++..+.++||||..... ....-+.+...++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-ANSIDEIIARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS-SSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc-cccHHHHHHHHHH
Confidence 45789999999999999999999876 45667777774 23355667888999999986532 1111112222222
Q ss_pred hh--hhhhccccCcc-------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhh
Q psy11743 382 NR--FQCSLVNSPVL-------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVF 452 (551)
Q Consensus 382 ~~--~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 452 (551)
.. +...+.=.|.. .-.......++.++|+||+|++ ... ......+.+.+.+. .+.+.
T Consensus 82 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------~~~--~~~~~~~~~~~~~~--~~~~~ 147 (188)
T 2wjg_A 82 INEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA----------KSL--GIEIDVDKLEKILG--VKVVP 147 (188)
T ss_dssp HHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH----------HHT--TCCCCHHHHHHHHT--SCEEE
T ss_pred hccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc----------ccc--cchHHHHHHHHHhC--CCeEE
Confidence 11 10000000111 0111222467889999999982 111 11112233434332 34444
Q ss_pred h--ccchH-HHHHHHHHHHH
Q psy11743 453 G--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 453 ~--~~~~~-~~l~~~~~~~~ 469 (551)
+ +++.+ +++++.+....
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHH
Confidence 4 77877 88888887655
No 249
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.70 E-value=1.5e-08 Score=92.81 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+++++|.+|+||||++|.|.+..+ ..++..+++|+ ...+.+++..+.++||||...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 356899999999999999999999873 45677888885 233556777788999999865
No 250
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.70 E-value=4.7e-08 Score=87.82 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=37.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
+.+|+++|.+|+||||++|+|.+..+.. ...+..++.....+..++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999887431 1111111112233444443 37789999953
No 251
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.69 E-value=2.4e-08 Score=89.47 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++++++|.+|+||||++|.|.+..+ ..++..+++|+ ......++..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS--AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe--eeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 5799999999999999999999873 34566677764 2334556778899999998764
No 252
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.69 E-value=3.3e-08 Score=90.22 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=38.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|+|.+..+. ....+..+. ...+..++. .+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4578999999999999999999988743 222232222 233444443 67889999953
No 253
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.68 E-value=4.7e-08 Score=90.34 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=75.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecC-----------CCccccCCceeecCCCCCc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDE-----------REGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~-----------~~~~l~dt~gi~~~~~~~~ 371 (551)
..++|+++|.+|+||||++|+|.+..+... ..+..+.+. ...+..++ ..+.++||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------ 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------
Confidence 457999999999999999999999875321 111111111 12233333 3677899999632
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------ccccccc--------------cccceeEEEecccCCCCccchhhhhhhhhc
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQ--------------TPEVARVYIGSFWDQPLVHDVNRRLFEDRS 430 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~ 430 (551)
|.. .....+..+|+ ..+.++. ...++.++|+||+|+.. ...
T Consensus 83 ----~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~ 144 (195)
T 3bc1_A 83 ----FRS----LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED----------QRA 144 (195)
T ss_dssp ----GHH----HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG----------GCC
T ss_pred ----HHH----HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------ccc
Confidence 111 11122223332 1111111 15678899999999821 111
Q ss_pred cChhhHHHHHHHHHHhccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 431 STSNSVQAYIISALRKDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
... .....+...+ ..+.+.+ +++.+ ++++..+.+.+
T Consensus 145 ~~~-~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 145 VKE-EEARELAEKY--GIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp SCH-HHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCH-HHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 1122222322 2455555 78888 99998887755
No 254
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.67 E-value=2.3e-07 Score=96.92 Aligned_cols=116 Identities=22% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC----CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG----IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~----~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....|+|+|++|+|||||+|.|+|...+. ...+.. ++... .+ + +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~-~t~~~-~v-~-----------------------------q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE-VTMER-HP-Y-----------------------------K 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCC-EE-E-----------------------------E
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee-cceeE-Ee-c-----------------------------c
Confidence 34589999999999999999999954210 011111 11000 00 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHH-HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW-FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~-~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
.+....++++|+||+.... . ...+.+.. .+...+..++ ++... ...+...++..+...++|+++|+|
T Consensus 116 --~~~~~~ltv~D~~g~~~~~-~------~~~~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 116 --HPNIPNVVFWDLPGIGSTN-F------PPDTYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp --CSSCTTEEEEECCCGGGSS-C------CHHHHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred --ccccCCeeehHhhcccchH-H------HHHHHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCCCeEEEEe
Confidence 1112458999999986421 1 12222222 2345566665 77652 467777888888888899999999
Q ss_pred CCCCC
Q psy11743 210 KADMV 214 (551)
Q Consensus 210 K~Dl~ 214 (551)
|.|++
T Consensus 184 kpdll 188 (413)
T 1tq4_A 184 KVDSD 188 (413)
T ss_dssp CHHHH
T ss_pred cCccc
Confidence 99975
No 255
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.67 E-value=1.9e-08 Score=99.75 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=37.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccc-----cCCCcccc-e--EEEEecCC--CccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI-----GPEPTTDR-F--IAVMYDER--EGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v-----~~~~~~tr-~--~~~~~~~~--~~~l~dt~gi~~~ 366 (551)
..+|+++|.+|+||||++|+|++.+...... ...++++. . ..+..++. .+.++||||+.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4689999999999999999999987422111 01233332 1 22223343 6789999998544
No 256
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.67 E-value=5.7e-08 Score=91.12 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEec--CCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
.+.++|+++|.+||||||++|.|.+..+. ....+.+. .......+ ...+.++||||...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS---EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence 35679999999999999999999998753 11112221 12222222 34567899999654
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=3.3e-08 Score=89.45 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=38.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEec--CCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~--~~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|.|.+..+..........+++. ..... ...+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999886532222222222221 22222 2357789999964
No 258
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.65 E-value=7.5e-08 Score=89.43 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+ .....++++. ...+..++ ..+.++||||..... .....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHH
Confidence 457999999999999999999999874 2333344432 23344444 357788999954321 11111
Q ss_pred HHhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+... .......++.++|+||+|+.-. ..... .....+...+
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~----------~~~~~-~~~~~~~~~~-- 151 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK----------KVVDY-TTAKEFADSL-- 151 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT----------CCSCH-HHHHHHHHHT--
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc----------cccCH-HHHHHHHHHc--
Confidence 12111111110111111 1111236788999999998311 11110 1122222322
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+|.+.+ ++|.+ ++++..+.+.+.
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3455555 88888 999888877553
No 259
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.64 E-value=4.3e-08 Score=89.63 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec-C--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD-E--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~-~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|.|.+..+.. ...+..+.+. ...+..+ + ..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 45799999999999999999999987431 1112222222 2223333 2 356789999954
No 260
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.64 E-value=8.2e-08 Score=88.02 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
+.++|+++|.+|+||||++|.|.+..+. ....+..+.+.......++ ..+.++||||...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 4579999999999999999999977642 2222222333333344454 3457899999764
No 261
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.63 E-value=7.7e-08 Score=107.50 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
.+++|+++|.+|+||||++|+|+|..+ .+++..|+|.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~--~~v~~~p~T~ 104 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL--LPSDVNPCTA 104 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC--SCCCCCTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCCCCcc
Confidence 468999999999999999999999974 6788888773
No 262
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.63 E-value=8.5e-08 Score=86.59 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=36.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+|+++|.+|+||||++|+|.+..+. ....++++. ...+..++. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---C-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 468999999999999999999998742 223333332 222344443 567889999654
No 263
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=8.5e-08 Score=99.46 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|.+|||||||+|+|+|...+.+...|.+|.+.......- ++..++.+.. .+ -+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v------~~~r~~~l~~---~~--------~~~ 80 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV------PDERFDWLCE---AY--------KPK 80 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE------CCHHHHHHHH---HH--------CCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee------CCcchhhhhh---hc--------ccc
Confidence 346799999999999999999999987644555665565544332211 1100000000 00 000
Q ss_pred CCc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 134 PVL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 134 ~~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
... ..+.++||||+..+... +..+.......+..+|++++|+|+..
T Consensus 81 ~~v~~~i~lvD~pGl~~~~s~----~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 81 SRVPAFLTVFDIAGLTKGAST----GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECEEEEEECTGGGCCCCCS----SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCcceEEEeccccccCCcH----HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000 24789999999864321 22233455667789999999999873
No 264
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.61 E-value=1.1e-08 Score=97.21 Aligned_cols=147 Identities=15% Similarity=0.084 Sum_probs=79.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC---CCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE---REGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~---~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
...+|+++|.+|+||||++|+|++..+. .......+++. .......+ ..+.++||||....... ...+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-------KDVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-------CHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-------HHHH
Confidence 4579999999999999999999988753 33334444443 22222222 34778999996543211 1111
Q ss_pred HhhhhhhccccCcccccccc-------------cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH-h
Q psy11743 381 LNRFQCSLVNSPVLKGKVLQ-------------TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR-K 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ 446 (551)
+..+...+.=.|+..+.+++ ...++.++|+||+|+.-. ... ..+....... .
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----------~~~----~~~~~~~~~~~~ 147 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR----------QKI----SKKLVMEVLKGK 147 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------------C----CHHHHHHHTTTC
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc----------ccc----CHHHHHHHHHHc
Confidence 11111111111222221111 125788999999998311 000 0111212221 2
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
..+.+.+ ++|.+ ++++..+.+.+....
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 3455555 88888 999999988765443
No 265
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.61 E-value=9.4e-08 Score=86.29 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
+..+|+++|.+|+||||++|.|.+..+. ....+.++++. .....+. ...+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 3578999999999999999999999753 23444455553 2233343 3567789999974
No 266
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.61 E-value=1.2e-07 Score=89.35 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=76.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ....++++. ...+.+++ ..+.++||||....... ...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC---CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHH
Confidence 4679999999999999999999988742 233343332 22344454 46788999996532211 111
Q ss_pred HHhhhhhhccccCccccc-------------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKGK-------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+..+. ......++.++|+||+|+... .........+...+
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~-- 154 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR------------VVTADQGEALAKEL-- 154 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC------------CSCHHHHHHHHHHH--
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------------ccCHHHHHHHHHHc--
Confidence 111111111100111110 011235788999999998211 00001122333333
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ ++++..+.+..
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2355555 78888 99998887754
No 267
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.61 E-value=9.7e-08 Score=86.01 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+ . ...+..++ ..+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK---DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 45789999999999999999999986421 2222222 1 22233443 3677889999654
No 268
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.60 E-value=4.3e-08 Score=90.28 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=44.0
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+..+|+++|.+|+||||++|.|.+..+ ....+..+.+. ..+.+++..+.++||||...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNV-EEIVINNTRFLMWDIGGQES 77 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSC-EEEEETTEEEEEEEESSSGG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceee-EEEEECCEEEEEEECCCCHh
Confidence 344678999999999999999999999876 34444445443 33445678889999999754
No 269
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.60 E-value=1.2e-07 Score=87.70 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
++.+|+++|.+|+||||++|.|.+..+.. ....++. ...+..++. .+.++||||...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 45799999999999999999999886421 2222222 223344443 477899999653
No 270
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.59 E-value=4.8e-08 Score=91.00 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|+|.+..+.. ...+..+.+. ...+..++ ..+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 445789999999999999999999886421 1112222222 22244444 357789999953
No 271
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.59 E-value=1.3e-07 Score=88.42 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=76.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ...+.|+ ....+..++. .+.++||||.... . .....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~---~~~~~ 81 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----A---AIRDN 81 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----H---HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----H---HHHHH
Confidence 4579999999999999999999988742 1222222 2223444443 5778999995421 1 11112
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|++- ......+ ....+....
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~-~~~~~~~~~- 149 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED----------KRQVSVE-EAKNRAEQW- 149 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG----------GCCSCHH-HHHHHHHHH-
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc----------cccccHH-HHHHHHHHh-
Confidence 22221111111111110 011123678899999999821 1111111 112222222
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ ++|.+ ++++..+.+..
T Consensus 150 -~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 150 -NVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp -TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2355545 88888 99998887755
No 272
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.59 E-value=1.3e-07 Score=88.01 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=25.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|++..+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 3568999999999999999999999875
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.58 E-value=1.2e-07 Score=85.30 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+. .....|+ ....+..++ ..+.++||||..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC----CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 3568999999999999999999998742 1122222 122234444 357789999954
No 274
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.58 E-value=1.6e-07 Score=85.71 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=76.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ...+.|+. ......++ ..+.++||||...... ....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~ 76 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV----SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQ 76 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC----SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc----cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHH
Confidence 4579999999999999999999998642 23333332 22234444 3567899999653221 1111
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|+.- ...... .....+...
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------~~~v~~-~~~~~~~~~-- 143 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES----------QRQVPR-SEASAFGAS-- 143 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG----------GCCSCH-HHHHHHHHH--
T ss_pred HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------ccccCH-HHHHHHHHH--
Confidence 22221111111111110 111234678899999999821 111110 111122221
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
...+.+.+ ++|.+ +++++.+.+.+.
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 23344444 78888 899888877654
No 275
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.58 E-value=1.2e-07 Score=90.52 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.++|+|+|.+|||||||+|+|++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998753
No 276
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.58 E-value=4.5e-08 Score=89.86 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++.+|+++|.+|+||||++|.|.+..+ ....+..+.+ ...+.+++..+.+.||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFN-VETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCC-EEEEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccc-eEEEEECCEEEEEEECCCCHh
Confidence 578999999999999999999997764 3333333322 233455677888999999865
No 277
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.58 E-value=1.3e-07 Score=102.79 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=59.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC--CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP--EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~--~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+|+|.||||||||+|+|+|.... +..+. .++|.... ++.. .++.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~-~~~~~tt~~~T~gi~--~~~~---------------------------~~~~ 87 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKG-FSLGSTVQSHTKGIW--MWCV---------------------------PHPK 87 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSC-SCCCCSSSCCCCSEE--EEEE---------------------------ECSS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCc-cccCCCCCCceeEEE--Eeec---------------------------cccc
Confidence 368999999999999999999998753 12111 11222111 1100 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG 199 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 199 (551)
..-..+.+|||||+.+...... ..+........+ .++ ++|+|+.. .++..+..++..+.+
T Consensus 88 ~~~~~i~LiDTpGi~~~~~~~~--~~~~~~fala~l-lss--~lv~n~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 88 KPGHILVLLDTEGLGDVEKGDN--QNDSWIFALAVL-LSS--TFVYNSIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp STTCEEEEEEECCBCCGGGCCC--TTHHHHHHHHHH-HCS--EEEEEEES-CSSHHHHHTTHHHHT
T ss_pred CCCceEEEecCCCcCcccccch--hHHHHHHHHHHH-hcC--eEEEECCC-CccHHHHHHHHHHHH
Confidence 0014589999999987433111 111111111111 244 56677765 788888777766543
No 278
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.57 E-value=1.4e-07 Score=84.81 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=37.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
..+|+++|.+|+||||++|+|.+..+.. ...+.+. .......++ ..+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC---SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 4689999999999999999999876421 1112211 122233333 3567899999653
No 279
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.57 E-value=1.6e-07 Score=86.15 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=75.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
...+|+++|.+|+||||++|.|.+..+. ...+.|+ ....+..++. .+.++||||.... . .....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~---~~~~~ 85 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----A---AIRDN 85 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----H---HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC----CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----H---HHHHH
Confidence 4579999999999999999999998742 1222222 1222344443 5778999995421 1 11112
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|++. ......+ ....+.+.+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~-~~~~~~~~~- 153 (187)
T 2a9k_A 86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED----------KRQVSVE-EAKNRAEQW- 153 (187)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG----------GCCSCHH-HHHHHHHHT-
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------cCccCHH-HHHHHHHHc-
Confidence 22221111111111110 011123678899999999821 1111111 112222222
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ +++.+ ++++..+.+..
T Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 -NVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2355555 78888 99988887754
No 280
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.57 E-value=1.8e-07 Score=87.81 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=76.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
...+|+++|.+|+||||++|+|.+..+. ....++.+ . ...+.+++. .+.++||||........ ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT---NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT-------SS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC---TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH-------HH
Confidence 3579999999999999999999998753 22223322 2 223444443 67889999954322111 11
Q ss_pred HHhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+..+ .......++.++|+||+|+.-. ..... .....+... .
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~----------~~~~~-~~~~~~~~~--~ 143 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK----------RVVEY-DVAKEFADA--N 143 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT----------CCSCH-HHHHHHHHH--T
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc----------cccCH-HHHHHHHHH--c
Confidence 11111000000011111 0111245788999999998311 01110 111222222 2
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ ++++..+.+..
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455555 88888 99998887755
No 281
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.57 E-value=6e-08 Score=87.52 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|+|++..+. ....+..+.+. ......++ ..+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999998753 12223333333 22333443 367789999943
No 282
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.57 E-value=5.2e-08 Score=96.94 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.+|||||||+|+|+|.....+...|+.|++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~ 158 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ 158 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee
Confidence 3468999999999999999999999876566666655444
No 283
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.57 E-value=1.5e-07 Score=85.13 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|+|.+..+. ...+..+. ....+.+++..+.++||||...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~-~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--TTIPTIGF-NVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSSE-EEEEEEETTEEEEEEEECCCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCcc-ceEEEEECCEEEEEEECCCChh
Confidence 5679999999999999999999988753 11121121 1233455677888999999653
No 284
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.56 E-value=1.2e-07 Score=89.01 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. ....+..+. ...+..++ ..+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4579999999999999999999998743 122233322 22234444 3577899999643
No 285
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.56 E-value=3e-08 Score=101.38 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=45.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~ 366 (551)
-+.|+++|.|||||||++|+|.+.. ..++..|.+|. ...+.+.+ ..+.++||||+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~---~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC---CccccCCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 3579999999999999999999886 45677777774 22344544 77899999998753
No 286
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.56 E-value=1.4e-07 Score=87.40 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
....+|+++|.+|+||||++|+|.+..+.. ...+..+++. ...+... ...+.++||||...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 345799999999999999999999987532 1222233333 2223333 34677899999643
No 287
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=6.8e-08 Score=89.34 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+. ...+..+.+ ...+.+++..+.++||||...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSN-VEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSS-CEEEEETTEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccc-eEEEEECCEEEEEEECCCCHh
Confidence 4689999999999999999999987752 333333322 233455678889999999854
No 288
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.55 E-value=7e-08 Score=90.89 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCcc--ccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGS--VPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~--l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.+.+..+. +....|+. ...+..++..+. ++||||...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC----C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC----CCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 5689999999999999999999987643 22223332 223444555544 899999743
No 289
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.55 E-value=1.8e-07 Score=85.55 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|+|++..+.... .+..+.+. ...+... ...+.++||||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 3568999999999999999999998753211 11222222 2233343 3467889999953
No 290
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.55 E-value=1.1e-07 Score=88.11 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=39.3
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCC--ccccCCceee
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.....+|+++|.+||||||++|.+++..+... ..|... ....+.+++.. +.+.||||..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE---ESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC---CCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence 34567999999999999999999998875321 112111 12334455544 4568999964
No 291
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.54 E-value=8.5e-08 Score=89.00 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...++|+++|.+|+||||++|.|.+..+.....+..++++.. +.+..+.++||||....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----CCCTTCSEEEETTCCBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----ecCCeEEEEECCCCchH
Confidence 456899999999999999999999987543333444444431 25678889999998653
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.54 E-value=2.6e-07 Score=84.11 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=39.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|+|.+..+. .......+.+. ...+..++ ..+.++||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 4579999999999999999999998752 11222223332 22233433 457789999954
No 293
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.2e-07 Score=88.15 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+. ..+.+.++++.. ..+..+ ...+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 4579999999999999999999998753 345556666643 223333 3457789999954
No 294
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.54 E-value=4.1e-08 Score=105.74 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
...++|+++|.|||||||++|.|.+..+. ...+..+.+ ...+.+++..+.++||||...-. . .
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~T~~~~-~~~~~~~~~~~~l~Dt~G~~~~~----~---~------- 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFN-VETVTYKNVKFNVWDVGGQDKIR----P---L------- 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSSEE-EEEEESSSCEEEEEEECCCGGGS----G---G-------
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCCcccee-EEEEEeCCEEEEEEECCCcHHHH----H---H-------
Confidence 34579999999999999999999998742 222211111 23355677888999999954321 1 1
Q ss_pred hhhhccccCcc-------cccc--------------cccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHH
Q psy11743 384 FQCSLVNSPVL-------KGKV--------------LQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIIS 442 (551)
Q Consensus 384 ~~~~~~~~~~~-------~~~~--------------~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (551)
....+..+|++ ...+ .....++.|+|+||+|++-. .. ...+..
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~----~~~~~~ 446 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA------------MK----PHEIQE 446 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC------------CC----HHHHHH
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC------------CC----HHHHHH
Confidence 11122333321 1111 11246788999999998321 11 122223
Q ss_pred HHH------hccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 443 ALR------KDMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 443 ~l~------~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
.+. ...+++.+ ++|.+ +++++.+.+.++.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 447 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp HTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred HhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 232 12344445 88999 999999887654333
No 295
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.54 E-value=1.8e-07 Score=84.34 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|+|.+..+.. ...+..+++. ......+ +..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35689999999999999999999886531 1223333333 2223333 4467789999954
No 296
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.54 E-value=8.2e-08 Score=89.34 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+.+....+..++.. +.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPT-AYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-ccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 45799999999999999999999987421 11111111122233444444 4789999954
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.54 E-value=1.6e-07 Score=84.86 Aligned_cols=57 Identities=23% Similarity=0.071 Sum_probs=33.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||++|.|.+.... .....+.+. ....+..++ ..+.+.||||...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGD--HAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCc--ccccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 57999999999999999999976531 111111112 122233444 3456789999764
No 298
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.54 E-value=2.6e-07 Score=84.76 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
...+|+++|.+|+||||++|.|.+..+. ....+.++ .......++.. +.++||||..... .....+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~ 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV---DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS-------AMREQY 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC-------SSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH-------HHHHHH
Confidence 4568999999999999999999988642 11222222 12223445544 4459999954321 111122
Q ss_pred HhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
+..+...+.=.|+..+ .......++.++|+||+|++-. .... ......+.+.+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------~~v~-~~~~~~~~~~~-- 153 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL----------RKVT-RDQGKEMATKY-- 153 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT----------CCSC-HHHHHHHHHHH--
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc----------cCcC-HHHHHHHHHHh--
Confidence 2222111111111111 1122356788999999998311 0111 11122333333
Q ss_pred ccchhhh--c-cchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--K-EGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~-~~~~-~~l~~~~~~~~ 469 (551)
.+|.+.+ + ++.+ ++++..+.+.+
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 2555555 6 7888 88888887644
No 299
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.3e-07 Score=88.02 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEec--CCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+...... ..+.+....+..+ ...+.++||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHH
Confidence 467999999999999999999999865322111 1111212222233 33577899999643
No 300
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.53 E-value=2.9e-07 Score=85.36 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
....+|+++|.+|+||||++|.|.+..+... ..+..+.+. ...+..++ ..+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 3456899999999999999999999875311 111122222 22344444 3677899999653
No 301
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.53 E-value=2.3e-07 Score=84.51 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=38.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|+|++..+. ....+.++. ...+..++ ..+.++||||..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 468999999999999999999988743 222333332 22233444 367789999954
No 302
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=1.5e-07 Score=87.34 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
....+|+++|.+||||||++|.|.+..+.. ...+..+++. ...+... ...+.++||||...- ......+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~ 92 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAY 92 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHH
Confidence 346799999999999999999999987532 2222234343 2233333 445778999994321 1111111
Q ss_pred HhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 381 LNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
+..+...+.=.|+... .......++.++|+||+|++- . ........+.+...+ .
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~----------~-~~~~~~~~~~~~~~~--~ 159 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE----------E-RVVPTEKGQLLAEQL--G 159 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG----------G-CCSCHHHHHHHHHHH--T
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc----------c-cccCHHHHHHHHHHc--C
Confidence 1111111110111110 111124678899999999821 1 111111122233322 2
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
++.+.+ ++|.+ ++++..+.+..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355545 78888 88888887644
No 303
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.53 E-value=1.6e-07 Score=86.32 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|.|.+..+. ....+.++ . ...+..++ ..+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK---DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4579999999999999999999998742 22223322 1 22233444 467789999953
No 304
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.52 E-value=2.2e-07 Score=86.29 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEe--cCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMY--DEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~--~~~~~~l~dt~gi~~ 365 (551)
...++|+++|.+|+||||++|+|.+..+... ..+..+.+. ...+.. .+..+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 3457999999999999999999999875311 111222222 122333 344577899999754
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.52 E-value=2.5e-07 Score=82.76 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=72.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
..+|+++|.+|+||||++|.|.+..+... ..+..+......+..++. .+.++||||..... . ....++..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~---~~~~~~~~ 74 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A---MRDQYMRT 74 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H---HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEEEEEECCEEEEEEEEECCCchhhh----H---HHHHhhcc
Confidence 45899999999999999999998864211 111111111222334433 46789999954321 1 11122222
Q ss_pred hhhhccccCcccccc--------------cccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVLKGKV--------------LQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
+...+.-.|+....+ .....++.++|+||+|+.-. .........+.+.+ ..|
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~--~~~ 140 (166)
T 2ce2_X 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR------------TVESRQAQDLARSY--GIP 140 (166)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC------------CSCHHHHHHHHHHH--TCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc------------ccCHHHHHHHHHHc--CCe
Confidence 211111111111100 11136788999999998321 01111222333333 235
Q ss_pred hhhh--ccchH-HHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+ ++|.+ +++++.+.+.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHH
Confidence 5544 77888 8888877653
No 306
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.52 E-value=1.2e-07 Score=87.67 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=41.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+.++|+++|.+|+||||++|+|.+..+. ...+..+. ....+..++..+.++||||...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~-~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--TTVPTVGV-NLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--EECSSTTC-CEEEEEETTEEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--CcCCCCce-EEEEEEECCEEEEEEECCCCHh
Confidence 4689999999999999999999887642 22222221 1233455677888999999754
No 307
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=88.02 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=35.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|.|.+..+. ....+..+ . ...+..++ ..+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 34579999999999999999999988642 12222222 1 22234444 467889999964
No 308
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.52 E-value=2.8e-07 Score=84.22 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+.. ..+..+......+..++. .+.+.||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch
Confidence 45789999999999999999999987632 223233222333444443 456789999653
No 309
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.51 E-value=1.8e-07 Score=87.40 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
....+|+++|.+||||||++|.|.+..+. ...+.|+. ...+..++. .+.+.||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP----TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 35679999999999999999999987632 22233332 223444554 455899999754
No 310
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.50 E-value=3.7e-07 Score=100.46 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=48.4
Q ss_pred cCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhc-cCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAER-VDRIILLFDAHKLDI-SDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~-aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..++++|.||+.......++. ...+...+..++.+ ..++++++++.. +. +.....+++.+...+.+.|+|+||+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~-d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV-DIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS-CTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc-hhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 569999999987532222221 12244455555544 356666766553 43 33446777778778899999999999
Q ss_pred CCCHH
Q psy11743 213 MVDHQ 217 (551)
Q Consensus 213 l~~~~ 217 (551)
++...
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 98643
No 311
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.50 E-value=2.7e-07 Score=86.51 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecCC--CccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~~--~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+.. ...|.++. ...+..++. .+.++||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS---SCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc---ccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 45689999999999999999999987531 22233332 233444443 56788999954
No 312
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.50 E-value=1e-07 Score=88.34 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
.+..+|+++|.+|+||||++|.|.+..+. ....+..+.+ ...+..++..+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFN-MRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEE-EEEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCcee-EEEEEeCCEEEEEEECCCCH
Confidence 34579999999999999999999988753 1111212222 22344567788899999954
No 313
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.50 E-value=2.1e-07 Score=86.18 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=39.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|+|.+..+.. ...+..+.+. ...+..++ ..+.++||||..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 355799999999999999999999887532 1122222222 23344444 467889999953
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.50 E-value=9e-08 Score=88.26 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..++++++|.+||||||++|.|.+..+ ..+.+..+.+. ..+.+++..+.+.||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~~t~g~~~-~~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNI-KSVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC--EEEEEETTEEE-EEEEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--CcccCcCCeEE-EEEEECCEEEEEEECCCCH
Confidence 568999999999999999999998864 33444444332 2344567778899999964
No 315
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.49 E-value=1.3e-07 Score=87.21 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+|+++|.+|+||||++|.|.+... ....+..+.+ ...+.+++..+.+.||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~t~~~~-~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLGFN-IKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCCCSSEE-EEEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--CcccccCccc-eEEEEECCEEEEEEECCCCH
Confidence 568999999999999999999998762 2222222222 22344567788899999974
No 316
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.48 E-value=1.6e-07 Score=84.39 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=39.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.|.+..+.. ..|.... ...+..++..+.+.||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC----CCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc----ccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 378999999999999999999887532 2232222 23345567788899999974
No 317
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.48 E-value=3.3e-07 Score=85.65 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
....+|+++|.+|+||||++|+|.+..+. ....+..+.+. ...+..++ ..+.++||||..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 35689999999999999999999998753 23333344443 23344443 457789999953
No 318
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.48 E-value=9.2e-08 Score=89.01 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+. ...+..+.+ ...+.+++..+.+.||||...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPT-SEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CCCCCCSCE-EEEEEETTEEEEEEECCCSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--ccccCCCCC-eEEEEECCEEEEEEECCCCHH
Confidence 4569999999999999999999998753 233333332 334556777888999999764
No 319
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=3.4e-07 Score=86.14 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCcee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi 363 (551)
...+|+++|.+||||||++|+|.+..+. ....+..+. ...+..++ ..+.+.||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4579999999999999999999988742 222232221 22234444 35778999995
No 320
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.47 E-value=7.1e-08 Score=99.02 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
..+.|+++|.||+||||++|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999997
No 321
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.47 E-value=2.4e-07 Score=91.41 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|+|++..+ ..++..+++|+ . .....++..+.++||||..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 467999999999999999999999874 45677777774 2 3344567779999999987653
No 322
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.47 E-value=1.8e-07 Score=87.61 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++.+|+++|.+||||||++|.|.+..+. ...+..+.+ ...+.+++..+.+.||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHVPTLHPT-SEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCS-CEEEEETTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCCCce-eEEEEECCEEEEEEECCCcHh
Confidence 4678999999999999999999987652 223333333 234556677888999999654
No 323
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.47 E-value=2.3e-07 Score=84.52 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecC---CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDE---REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~---~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+.. ....+.+++ ..+.+.||||...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 45799999999999999999999887531 111111211 123344444 5678899999643
No 324
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=5.9e-07 Score=83.64 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+... ..+..++.....+..++ ..+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 467999999999999999999999875211 11111111222233443 4577899999765
No 325
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.46 E-value=3.1e-07 Score=94.68 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+.++++|.+|+||||++|.|.+.. ..++..+++|+ ...+.+++..+.++||||+.+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~---~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT---QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC---ccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 3469999999999999999999987 46677787774 344666778888999999765
No 326
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.45 E-value=2.1e-07 Score=84.08 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+.. ...+..+. ...+..++. .+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND---KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS---SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc---CCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 35789999999999999999999887431 22232222 223344444 456779999543
No 327
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.45 E-value=1.4e-07 Score=100.89 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=78.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC----CCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD----FPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFG 377 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~----~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~ 377 (551)
+.++|+++|.+++|||||+|+|.+.. ....+....+++|. .....+++..+.++||||..+ |
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~----------~- 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD----------L- 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH----------H-
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH----------H-
Confidence 45799999999999999999999886 33345555566663 233455778899999999632 2
Q ss_pred hHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHH
Q psy11743 378 NSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYII 441 (551)
Q Consensus 378 ~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~ 441 (551)
.......+..+|+ ..|...|+ ..++.|+|+||+|++-. ...+...+++.
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~------------~~~~~~~~~l~ 151 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT------------EEIKRTEMIMK 151 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH------------HHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc------------hhHHHHHHHHH
Confidence 2223333344443 22322222 45677999999998310 11111233333
Q ss_pred HHHH-----hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 442 SALR-----KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 442 ~~l~-----~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
+.+. ...|++.+ ++|.+ ++|++.+.+..
T Consensus 152 ~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 152 SILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 3332 13465555 77888 88888887754
No 328
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.45 E-value=2.5e-07 Score=84.89 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+.. ....|+ ....+..++. .+.++||||...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCC----CcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 35689999999999999999999876421 112222 1222344444 345889999754
No 329
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.44 E-value=1.8e-07 Score=88.66 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|.+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3457999999999999999999998875
No 330
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.44 E-value=5.9e-07 Score=84.26 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
....+|+++|.+||||||++|.|.+..+.. ...+..+. ...+.+++ ..+.++||||..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE---RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC---CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 345789999999999999999999887521 11222221 22234444 467889999953
No 331
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.43 E-value=4.7e-07 Score=84.67 Aligned_cols=143 Identities=11% Similarity=0.117 Sum_probs=75.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+|+++|.+|+||||++|.|.+..+.. ...+..+++. ...+... ...+.++||||..... .....++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 79 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYR 79 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhc
Confidence 4689999999999999999999987532 1222223332 2223333 3467789999964211 11111111
Q ss_pred hhhhhccccCccccc-------------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 383 RFQCSLVNSPVLKGK-------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 383 ~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+...+.=.|+..+. ......++.++|+||+|++-. .... ......+.+.+ ..+
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~----------~~~~-~~~~~~~~~~~--~~~ 146 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE----------RVVS-SERGRQLADHL--GFE 146 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS----------CCSC-HHHHHHHHHHH--TCE
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc----------cccC-HHHHHHHHHHC--CCe
Confidence 111111101111110 011246788999999998311 0011 11222333333 235
Q ss_pred hhhh--ccchH-HHHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.+.+ ++|.+ ++++..+.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 78888 99998887754
No 332
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.2e-07 Score=86.67 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=38.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
..++|+++|.+||||||++|+|.+..+... ..+..+.+. ...+.+++ ..+.++||||...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 346899999999999999999999875311 111122222 22344444 4678899999543
No 333
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.42 E-value=7.8e-07 Score=93.31 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=56.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+. ..+..+|.+++|+|+.. + ......+..+.+......+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~-------lm~el~~i~~~~~pd~vlLVvDA~~-g--q~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKA-------LIEEMKQISNVIHPHEVILVIDGTI-G--QQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHH-------HHHHHHHHHHhhcCceEEEEEeCCC-c--hhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 35899999998753221 222222 22356899999999984 3 223344555554455677999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... . .... ....|+.|++. |+++
T Consensus 253 ~~gG~~--l-s~~~-------~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 AKGGGA--L-SAVA-------ATGAPIKFIGT--GEKI 278 (443)
T ss_dssp SSHHHH--H-HHHH-------TTCCCEEEEEC--SSST
T ss_pred ccccHH--H-HHHH-------HHCCCEEEEEc--CCCh
Confidence 654321 1 1111 12347888886 6655
No 334
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.42 E-value=6.3e-07 Score=92.14 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+.|+++|.||+||||++|.|...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999743
No 335
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=3.3e-07 Score=86.29 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...|.++. ...+..++ ..+.++||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC---cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 35689999999999999999999987531 11222222 22234444 3567889999653
No 336
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=5e-07 Score=83.60 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=40.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+. ....+..+.+. ...+... ...+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 3578999999999999999999998753 12222233332 2223333 34577889999643
No 337
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.41 E-value=7.8e-07 Score=91.52 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~ 366 (551)
...++++++|.+||||||++|.|.+.. ..++..+++|+... +..++..+.++||||....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK---PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC---CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCeeeceeEEEEEecCceEEEEeCCCcccc
Confidence 356899999999999999999999987 45677777776443 3335667889999998764
No 338
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.41 E-value=5.5e-07 Score=82.94 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+......+..++ ..+.+.||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 45789999999999999999999987531 111111111122233333 356788999964
No 339
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=87.18 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+.. ...+.+. ....+..++. .+.++||||...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45799999999999999999999876421 1112211 1222344443 577899999643
No 340
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.40 E-value=8.6e-07 Score=84.56 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+|+++|.+|||||||++.+.+..|... ..+..+.. ....+..++.. +.+.||+|... +.. +...++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~-~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~----~~~---l~~~~~~ 84 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER----FRS---LIPSYIR 84 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTT----CGG---GHHHHHT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCC-cCCccceEEEEEEEEecceEEEEEEEECCCchh----hhh---HHHHHhc
Confidence 45899999999999999999998875321 11111222 12233444443 45789999542 111 1112222
Q ss_pred hhhhhccccCccc-------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 383 RFQCSLVNSPVLK-------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+...+.-.|+.. -.....+.++.|+|+||+|++. +.....+ ..+.+...+ .++
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~----------~r~V~~~-e~~~~a~~~--~~~ 151 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD----------KRQVSIE-EGERKAKEL--NVM 151 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG----------GCCSCHH-HHHHHHHHH--TCE
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh----------cCcccHH-HHhhHHHHh--CCe
Confidence 2222222112111 1222346788999999999821 1111111 122233333 234
Q ss_pred hhhh--ccchH-HHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+ ++|.+ ++++..+...
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAA 173 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHH
Confidence 3333 88998 9998887653
No 341
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.40 E-value=2.6e-07 Score=86.09 Aligned_cols=57 Identities=21% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+. . ..|.... ...+..++..+.++||||...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE--E--EEEETTEEEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc--c--cCCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 4679999999999999999999987742 1 1221111 223445677888999999754
No 342
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.37 E-value=5.4e-07 Score=88.49 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+.++|+++|.+|+||||++|+|++... ..++..+++|. .....+++..+.++||||..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV--VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC--SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 468999999999999999999999873 46677777774 33355678889999999998643
No 343
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.37 E-value=4.6e-07 Score=85.47 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+......+..++. .+.+.||||...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 45799999999999999999999887421 1111111112223344443 677899999754
No 344
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=2.4e-06 Score=79.12 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. .....|+ ....+..++ ..+.+.||||...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 3468999999999999999999988642 1222222 122344444 3567899999754
No 345
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.36 E-value=1.7e-07 Score=98.41 Aligned_cols=141 Identities=11% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC-CccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~-~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++|+++|.+|+||||++|+|++..+ ..++..+++|. ...+.+.+. .+.++||||..+.... .....
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l----~~~~~-- 104 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL----GRLRV-- 104 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT----CCCCH--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCC--CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch----hHHHH--
Confidence 567999999999999999999999874 46777888874 344555544 7899999999864321 11110
Q ss_pred HhhhhhhccccCccc-----c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVLK-----G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
.++...+..+|+.. + .......++.|+|+||+|++-.... ...+.+.+. .
T Consensus 105 -~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-------------~~~~~l~~~--~ 168 (423)
T 3qq5_A 105 -EKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-------------ELKGLYESR--Y 168 (423)
T ss_dssp -HHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-------------HHHHHSSCC--T
T ss_pred -HHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-------------HHHHHHHHH--c
Confidence 11222223333211 1 1222346788999999998321110 011111111 1
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ +++++.+.+..
T Consensus 169 g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2455555 88888 99998887754
No 346
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.36 E-value=2.1e-07 Score=94.67 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
.++++|+++|.+|||||||+|.|.+..+. ...|.... ...+...+..+.++||||-.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~----~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE----EEEEETTEEEEEEEETTEEEEEEECC---
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC----CcccccceEEEEEecCcEEEEEEECCCCH
Confidence 34568999999999999999999988742 22232222 23345567788899999943
No 347
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.35 E-value=3.6e-07 Score=83.87 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. ....|+++. ...+.+++ ..+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 3578999999999999999999977632 222333332 12234444 5677899999653
No 348
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.35 E-value=5.6e-07 Score=84.08 Aligned_cols=57 Identities=25% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
..++|+++|.+|||||||+|.|.+.... ....++++ ....+.+++.. +.+.||||..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD---SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC---GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC---ccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 4579999999999999999999876421 12334333 23334455544 4567999874
No 349
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.34 E-value=5.7e-07 Score=82.23 Aligned_cols=57 Identities=19% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.+.+..+.. ....|+. ...+..++ ..+.+.||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPT----DYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 56899999999999999999999886421 1111221 11122233 3455899999653
No 350
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=3.1e-07 Score=90.35 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=24.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
.+|+++|.+|+|||||+|+|+|.....+...|+.|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~ 135 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK 135 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------C
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCcc
Confidence 699999999999999999999988644444444443
No 351
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.33 E-value=1.4e-06 Score=82.16 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=39.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec---CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD---EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~---~~~~~l~dt~gi~ 364 (551)
+.++|+++|.+|+||||++|.|.+..+.. ..+.++. ...+.++ +..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD----TQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC----BCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----ccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 46799999999999999999999987432 2233332 2234554 4557899999965
No 352
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.31 E-value=6.4e-08 Score=90.62 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+||||||++|+|.+..+. ....++++ . ...+..++ ..+.++||||...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC---CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4579999999999999999999987642 22223333 2 23344444 3577889999543
No 353
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.31 E-value=1.2e-06 Score=92.13 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=43.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-c-EEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-K-IRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~-vilVlNK~D 212 (551)
..+.||||||...... .+...+... +..+|.+++|+|+.. +. .....+..+.. .. + ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~-------~l~~~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~~~~~~-~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEK-------GLLEEMKQIKEITNPDEIILVIDGTI-GQ--QAGIQAKAFKE-AVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHH-------HHHHHHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHHHHHHT-TSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccH-------HHHHHHHHHHHHhcCcceeEEeeccc-cH--HHHHHHHHHhh-cccCCeEEEEeCCC
Confidence 4689999999875211 122222222 236899999999974 32 22233444443 24 5 889999999
Q ss_pred CCCH
Q psy11743 213 MVDH 216 (551)
Q Consensus 213 l~~~ 216 (551)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8753
No 354
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.30 E-value=9.9e-08 Score=90.88 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEe--cCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMY--DEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~--~~~~~~l~dt~gi~~ 365 (551)
....+|+++|.+||||||++|.++...+ .....+.++++.. ..... .+..+.++||||...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH-TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3457999999999999999999665532 1455666776653 33333 344577899999543
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.30 E-value=5.1e-07 Score=85.19 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...|... ....+..++ ..+.+.||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE---NYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC---CcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 45799999999999999999999987531 1112221 122233333 356789999964
No 356
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.30 E-value=1.7e-06 Score=80.63 Aligned_cols=58 Identities=14% Similarity=-0.016 Sum_probs=35.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||++|.+.+... ..++..+.++ ....+.+++.. +.+.||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHD--SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSC--CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcC--CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 46899999999999999999997542 1222222222 23334555554 45679998653
No 357
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.4e-06 Score=82.77 Aligned_cols=58 Identities=14% Similarity=-0.034 Sum_probs=36.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+|+++|.+|||||||+|.+.+... ..+...+.++ ....+.+++.. +.+.||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~--~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD--SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC--TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 347899999999999999999997642 1222223222 23334455544 4567998743
No 358
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.28 E-value=1.5e-06 Score=82.16 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=43.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...++++++|.+|+||||++|.|.+..+.....+..|+++.. +....+.++||||...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT----GGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE----eeCceEEEEECCCcHH
Confidence 357899999999999999999999987543333444444331 2566788999999854
No 359
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.28 E-value=2.7e-07 Score=96.16 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=20.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 344 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr 344 (551)
.+++++|.|||||||++|+|.+.. +.++..|+||+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~---~~~~~~p~tT~ 35 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTI 35 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCccc
Confidence 378999999999999999999987 67888998885
No 360
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.28 E-value=1.1e-07 Score=102.53 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEe-cCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMY-DEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~-~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
++|+|+++|.+|+|||||+|+|.+.. ......+++|.. ..+.+ ++..+.|+||||...-. .....+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~---~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----~~~~~~--- 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ---VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----AMRARG--- 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH---HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----TSBBSS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----HHHHHH---
Confidence 57899999999999999999999886 334455666642 22333 46689999999954311 111100
Q ss_pred HhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH------HH
Q psy11743 381 LNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA------LR 445 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------l~ 445 (551)
+..+...+.=.|+..|...|+ ..++.|+|+||+|++-.+.+ . ....+... +.
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~----------~---v~~~l~~~~~~~e~~~ 139 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE----------K---VKKELLAYDVVCEDYG 139 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC----------S---SSSHHHHTTSCCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH----------H---HHHHHHhhhhhHHhcC
Confidence 011111111112222333322 45678999999998422110 0 11111110 01
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
...|.+.+ ++|.+ ++|++.+....+
T Consensus 140 ~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 12355555 88999 999999887653
No 361
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.28 E-value=4.3e-07 Score=85.41 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE-EEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~-~~~~~~~~~~l~dt~gi~~ 365 (551)
...+++++|.+|+||||++|.|.+..+ ...+++.+|+|+.. ...+++ ...++||||...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET-TEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccccCCCccceeeEEEEecC-CEEEEECcCCcc
Confidence 456899999999999999999998763 25667788888632 233433 778899999864
No 362
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.28 E-value=1.4e-06 Score=82.58 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=37.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+.+....+..++ ..+.+.||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 46799999999999999999999987531 111111222222233333 456788999964
No 363
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.28 E-value=1.5e-06 Score=81.01 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.7
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEe---cCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY---DEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~---~~~~~~l~dt~gi~~ 365 (551)
......+|+++|.+||||||++|++.++......++.. .+++...... ....+.+.||||...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLE-STNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCC-CCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeec-cccceeeeeccCCCeeEEEEEECCCCHH
Confidence 34567899999999999999999999864222111111 1223333332 345678899999654
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.26 E-value=7.7e-07 Score=82.33 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
...+|+++|.+||||||++|+|.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999998764
No 365
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.24 E-value=8e-07 Score=96.01 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=61.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC-------------ccccc------CCCccc---ceEEEEecCCCccccCCce
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP-------------GIHIG------PEPTTD---RFIAVMYDEREGSVPGNAL 362 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~-------------~~~v~------~~~~~t---r~~~~~~~~~~~~l~dt~g 362 (551)
+.++|+++|.+|+||||++|.|++..-. +..+. ..+|.| ....+.+++..+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3568999999999999999999843210 00011 123334 2444667888899999999
Q ss_pred eecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 363 VVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
..+-. ..+...+..+| ...|...++ ..++.++|+||+|++
T Consensus 92 ~~df~--------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFT--------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred chhHH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 75422 12233333444 333333332 467889999999994
No 366
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.22 E-value=1.5e-06 Score=87.47 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=43.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEe-cCCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMY-DEREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~-~~~~~~l~dt~gi~ 364 (551)
..+|+++|.+||||||++|.|.+.. ...++..+++|.... ..+ ++..+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~--~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY--SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC--CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 4689999999999999999999885 245666777775322 333 55678899999965
No 367
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.22 E-value=1.8e-06 Score=88.78 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
.-|+|+++|.+|+||||++|+|.|..+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 456999999999999999999999865
No 368
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.22 E-value=1.7e-06 Score=91.56 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC--C--------------------------cccccCCCcccc---eEEEEecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF--P--------------------------GIHIGPEPTTDR---FIAVMYDE 352 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~--~--------------------------~~~v~~~~~~tr---~~~~~~~~ 352 (551)
...++|+++|.+|+|||||+|.|++..- . ..+....+|.|. ......++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 3457999999999999999999976520 0 011111244553 22244567
Q ss_pred CCccccCCceee
Q psy11743 353 REGSVPGNALVV 364 (551)
Q Consensus 353 ~~~~l~dt~gi~ 364 (551)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 789999999964
No 369
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.53 E-value=1.6e-07 Score=88.12 Aligned_cols=57 Identities=25% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+.. ....|+. ...+..++. .+.++||||...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 56799999999999999999999776421 1122221 122233343 345889999654
No 370
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.19 E-value=4.3e-06 Score=77.29 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+||||||++|.|.+..+. .....|+. ......++ ..+.+.||||...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI----SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC----cccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 4579999999999999999999988742 12222222 22233333 3466799999754
No 371
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.17 E-value=2.3e-06 Score=91.70 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=40.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--C--------------------------CcccccCCCcccc---eEEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--F--------------------------PGIHIGPEPTTDR---FIAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~--------------------------~~~~v~~~~~~tr---~~~~~~~~~ 353 (551)
...+|+++|.+|+|||||+|.|++.. + ........+|.|. ...+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35799999999999999999998761 0 1122233345553 333555778
Q ss_pred CccccCCceee
Q psy11743 354 EGSVPGNALVV 364 (551)
Q Consensus 354 ~~~l~dt~gi~ 364 (551)
.+.++||||..
T Consensus 112 ~~~iiDTPG~~ 122 (483)
T 3p26_A 112 NFTIVDAPGHR 122 (483)
T ss_dssp EEEEECCCCCG
T ss_pred eEEEEECCCcH
Confidence 89999999984
No 372
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.1e-06 Score=94.38 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=42.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCccccc------------------------------CCCcccc---eEEEEe
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG------------------------------PEPTTDR---FIAVMY 350 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~------------------------------~~~~~tr---~~~~~~ 350 (551)
...++|+++|.+|+|||||+|+|++... .... ..+|+|. ...+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~--~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS--CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC--CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 3467999999999999999999997731 1111 0245553 334556
Q ss_pred cCCCccccCCceee
Q psy11743 351 DEREGSVPGNALVV 364 (551)
Q Consensus 351 ~~~~~~l~dt~gi~ 364 (551)
++..+.++||||..
T Consensus 243 ~~~~~~iiDTPG~e 256 (611)
T 3izq_1 243 HRANFTIVDAPGHR 256 (611)
T ss_dssp SSCEEEEEECCSSS
T ss_pred CCceEEEEECCCCc
Confidence 77889999999974
No 373
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.14 E-value=7.6e-07 Score=83.25 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCCcccccCCCccc----ceEEEEecC----CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTD----RFIAVMYDE----REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~~~~v~~~~~~t----r~~~~~~~~----~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+. .+. .....|+ ....+.+++ ..+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL----KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc----CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 4569999999999999999999988 431 2222222 123344553 367889999964
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.14 E-value=1.6e-06 Score=88.57 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+...++++|.||+||||++|.|.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
No 375
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.13 E-value=2.4e-06 Score=86.23 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCcc--ccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGS--VPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~--l~dt~gi~~ 365 (551)
..++|+++|.+|+||||++|.+.+..+. .....|+. ...+..++..+. +.||||...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC----CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC----cccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 4689999999999999999999988642 22333442 222344555544 899999754
No 376
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.11 E-value=5.4e-07 Score=98.77 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=29.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC--------------------------cccccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP--------------------------GIHIGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~--------------------------~~~v~~~~~~tr~---~~~~~~~~ 353 (551)
..++|+++|.+|+|||||+|.|++.. +. ..+....+|+|.. ..+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 34689999999999999999997641 00 0111124566642 22444678
Q ss_pred CccccCCceeec
Q psy11743 354 EGSVPGNALVVD 365 (551)
Q Consensus 354 ~~~l~dt~gi~~ 365 (551)
.+.|+||||..+
T Consensus 256 ~i~iiDTPGh~~ 267 (592)
T 3mca_A 256 IYEIGDAPGHRD 267 (592)
T ss_dssp ---CCEEESSSE
T ss_pred EEEEEECCChHH
Confidence 899999999753
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.09 E-value=2.9e-06 Score=78.16 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+++++|.+||||||++|.|.+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999985
No 378
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.05 E-value=7.3e-06 Score=88.90 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=68.3
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-------EEe----cCCCccccCCceeecCCCCCch
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-------VMY----DEREGSVPGNALVVDPKKQFRP 372 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-------~~~----~~~~~~l~dt~gi~~~~~~~~~ 372 (551)
....+|+++|.+||||||++|.|.+..+. ....+..+.+-... +.. .+..+.+.||||...-.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----- 112 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----- 112 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-----
Confidence 35679999999999999999999988642 11111111111100 111 14567889999943211
Q ss_pred hhhhhhHHHhhhhhhccccCcccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH
Q psy11743 373 LDKFGNSFLNRFQCSLVNSPVLKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA 443 (551)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (551)
.....|+..+...+.=.|+... .......++.|+|+||+|++-.. ... .+.+.+.
T Consensus 113 --~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~----------~v~----~~~~~~~ 176 (535)
T 3dpu_A 113 --ASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY----------NIE----QKKINER 176 (535)
T ss_dssp --TTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC----------CCC----HHHHHHH
T ss_pred --HHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCccccc----------ccC----HHHHHHH
Confidence 1222233222111111121111 01111357889999999983211 111 1222333
Q ss_pred HH-hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 444 LR-KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 444 l~-~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
+. ...|.+.+ ++|.+ ++++..+.+...
T Consensus 177 ~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 177 FPAIENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred HHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 32 22345555 88888 999988887653
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.04 E-value=8.5e-06 Score=85.40 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=54.4
Q ss_pred cCeEEEeCCCCCC--CcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILS--GEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~--~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.||||||... .... +...+... .-.+|.+++|+|+.. + ......+..+.+.-.+..+|+||+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~-------lm~el~~i~~~~~pd~vlLVlDa~~-g--q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETK-------LLEEMKEMYDVLKPDDVILVIDASI-G--QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHH-------HHHHHHHHHHhhCCcceEEEEeCcc-c--hHHHHHHHHHhcccCCcEEEEeccc
Confidence 4689999999754 2211 22222221 235799999999984 3 2233445555544456789999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
........ + ...... ..|+.|++. |+++
T Consensus 250 ~~a~~G~a--l-s~~~~~-------g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAKGGGA--L-SAVVAT-------GATIKFIGT--GEKI 277 (433)
T ss_dssp GCSCHHHH--H-HHHHHH-------TCEEEEEEC--CSSS
T ss_pred ccccchHH--H-HHHHHH-------CCCEEEEEC--CCCh
Confidence 87543211 1 111112 347888886 5555
No 380
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.01 E-value=2.2e-06 Score=93.14 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC-cccceEE-E-----EecCCCccccCCceeecCCC--CCchhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-TTDRFIA-V-----MYDEREGSVPGNALVVDPKK--QFRPLDK 375 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-~~tr~~~-~-----~~~~~~~~l~dt~gi~~~~~--~~~~~~~ 375 (551)
..++|+++|.|||||||++|+|+|... +..++... ++|+.+. + ...+..+.|+||||+.++.. .......
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~-~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC-ccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 346899999999999999999999863 12333222 3334332 2 12467789999999998654 3344555
Q ss_pred hhh
Q psy11743 376 FGN 378 (551)
Q Consensus 376 ~~~ 378 (551)
|+.
T Consensus 116 fal 118 (592)
T 1f5n_A 116 FAL 118 (592)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.00 E-value=3.7e-06 Score=79.74 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+.++++|.+|+||||++|.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 382
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.00 E-value=3.4e-06 Score=88.19 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
..++|+++|.+|+|||||+|+|.+..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 46799999999999999999999853
No 383
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.99 E-value=2.4e-05 Score=82.24 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.|+|+|++++|||||+|+|+|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 57999999999999999999986
No 384
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.97 E-value=1e-05 Score=84.59 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...++++|.||+|||||+|.|.+.. ..++..+.+|. ...+...+ ..+.+.||||+......... ++..|+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~---~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~---L~~~fl 230 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG---LGLEFL 230 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC---SCHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC---ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh---hhHHHH
Confidence 4579999999999999999999885 35666776663 12244444 66889999998653211111 222232
Q ss_pred hh---hhhhccccCcc-------c-cc-ccc-----cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 382 NR---FQCSLVNSPVL-------K-GK-VLQ-----TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 382 ~~---~~~~~~~~~~~-------~-~~-~~~-----~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.. +...+.-.|+. . +. ... -...|.++|+||.|.+.. ...+.+.+.+
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----------------~~~~~l~~~l 294 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----------------EAVKALADAL 294 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----------------HHHHHHHHHH
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----------------HHHHHHHHHH
Confidence 21 11111111211 0 00 000 124567899999998311 1223344444
Q ss_pred H-hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 445 R-KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 445 ~-~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
. ...+++.+ +++.+ ++|++.+.+...
T Consensus 295 ~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 295 AREGLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp HTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 3 23455555 78888 999999988764
No 385
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.97 E-value=1.2e-05 Score=81.97 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
....++++|.||+||||++|.|.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 386
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.94 E-value=9.7e-06 Score=84.91 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=27.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
..+|+++|.+++|||||+|+|.+.......-...++.|
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giT 47 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGIT 47 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcE
Confidence 46899999999999999999997643223333335545
No 387
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.91 E-value=5.7e-06 Score=90.49 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
++++|+++|.+|+|||||+|+|++..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999999999874
No 388
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.91 E-value=4.5e-06 Score=85.47 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=39.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecC-----------------CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDE-----------------REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~-----------------~~~~l~dt~gi~~ 365 (551)
.+++++|.|||||||++|+|.+.. ..++..|++|.. ..+.+.+ ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999987 567777877742 1233433 4688999999874
No 389
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.89 E-value=3.2e-05 Score=80.87 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=25.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
...+|+++|.+++|||||+|+|.+.......-...+|.|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giT 45 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGIS 45 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcE
Confidence 457899999999999999999997643222223334444
No 390
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.89 E-value=9.3e-06 Score=88.76 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=72.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC--CC----cccc------cCCCcccc---eEEEEec-----CCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD--FP----GIHI------GPEPTTDR---FIAVMYD-----EREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~--~~----~~~v------~~~~~~tr---~~~~~~~-----~~~~~l~dt~gi~~ 365 (551)
..+|+++|.+++|||||++.|+... +. +..+ ....|.|- ...+.+. +..+.++||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999999742 10 0111 11233332 2234443 25677999999754
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhH
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSV 436 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~ 436 (551)
-. . .....+..+..++.=.|+..|...|+ ..++.|+|+||+|++-. ..+..
T Consensus 84 F~----~---ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a-------------~~~~v 143 (599)
T 3cb4_D 84 FS----Y---EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA-------------DPERV 143 (599)
T ss_dssp GH----H---HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC-------------CHHHH
T ss_pred HH----H---HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc-------------cHHHH
Confidence 11 0 00111122222222223444544443 46788999999999421 11223
Q ss_pred HHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 437 QAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 437 ~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+.+.+. ...+++++ ++|.+ ++|++.+.+.
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhc
Confidence 444555443 11234444 88888 9999888764
No 391
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.88 E-value=5.1e-05 Score=70.61 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=38.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+++++|.+|+||||++|.|.+..+.. ...+..+.+. ...+.+++. .+.+.||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 4689999999999999999999987421 1111122221 333455554 345689999654
No 392
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.88 E-value=1.5e-05 Score=87.11 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC--CC----cccc------cCCCcccc---eEEEEec---C--CCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD--FP----GIHI------GPEPTTDR---FIAVMYD---E--REGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~--~~----~~~v------~~~~~~tr---~~~~~~~---~--~~~~l~dt~gi~~ 365 (551)
..+|+++|.+++|||||+++|+... +. +..+ ....|.|- .....+. + ..+.++||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999998742 10 0111 11123331 2233332 2 4577999999864
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhH
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSV 436 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~ 436 (551)
-. . -....+..+..++.=.|+..|...|+ ..++.++|+||+|++-. ..+..
T Consensus 86 F~----~---ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a-------------~~~~v 145 (600)
T 2ywe_A 86 FS----Y---EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA-------------DVDRV 145 (600)
T ss_dssp GH----H---HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC-------------CHHHH
T ss_pred HH----H---HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc-------------CHHHH
Confidence 11 0 00011112222222223444544443 46778999999999421 11123
Q ss_pred HHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 437 QAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 437 ~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+++.+.+. ...+++++ ++|.+ +++++.+.+.
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence 334444332 11234444 78888 8998888763
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.88 E-value=0.00013 Score=72.81 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=42.9
Q ss_pred cCeEEEeCCCCCC--CcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCC
Q psy11743 137 KGISIVDTPGILS--GEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~--~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~ 211 (551)
..+++|||||... .... ....+. ..+..+|.+++|+|+.. + ......++.+.+ ..+ ..+|+||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~-------l~~el~~i~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAA-------LLEEMKNIYEAIKPDEVTLVIDASI-G--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHH-------HHHHHHHHHHHhcCCEEEEEeeCCc-h--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 3589999999875 2111 121121 23457999999999974 2 233344444443 355 77899999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98754
No 394
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=7.1e-06 Score=84.42 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=29.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccc----cCCCcccc---eEE--EEecCC--CccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDR---FIA--VMYDER--EGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v----~~~~~~tr---~~~--~~~~~~--~~~l~dt~gi~~~ 366 (551)
..+|+++|.+|+||||++|.|.+...+.... +..+..|. ... +...+. .+.++||||..+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 4689999999999999999998875321111 00111221 111 222232 5778999999554
No 395
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.85 E-value=2.5e-05 Score=74.25 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..++++++|.+||||||++|.|++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999876
No 396
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.84 E-value=2.8e-05 Score=81.24 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=40.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--------CCCcccc------cCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--------DFPGIHI------GPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--------~~~~~~v------~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+|||||+|+|++. .+....+ ....|.|. .......+..+.++||||..+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 3468999999999999999999984 1111101 11234442 222344567889999999753
No 397
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.84 E-value=7.7e-06 Score=83.74 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.++.+. .... ..++..+.. .+.|
T Consensus 194 ~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 194 HFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 578999999764 34444556789999999999985221 1222 334444433 3689
Q ss_pred EEEEEcCCCCCCH--------------------HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 204 IRIVLNKADMVDH--------------------QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~~--------------------~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+++|+||+|+... ++..+.....+..+.........+.+.+||+++.++
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 9999999998522 222222222222222110123456788999888777
No 398
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.83 E-value=1.1e-05 Score=83.22 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=73.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH---
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL--- 381 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~--- 381 (551)
+|+++|.+|+|||||+|+|+.+ +.|. .....+++..+.++||||..+ |.....
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC-----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHHHH
Confidence 7999999999999999999822 2221 223445677899999999753 211111
Q ss_pred hhhhhhccccCccccccccc---------cccee-EEEec-ccCCCCccchhhhhhhhhccChhhHHHHHHHHHH----h
Q psy11743 382 NRFQCSLVNSPVLKGKVLQT---------PEVAR-VYIGS-FWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR----K 446 (551)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~---------~~~~~-v~~~~-~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~ 446 (551)
..+..++.=.| ..|...|+ ..++. |+++| |+|+ .... + +...+++.+.+. .
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl--~~~~----~-------~~~~~~i~~~l~~~~~~ 147 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST--HMHA----I-------DELKAKLKVITSGTVLQ 147 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS--CHHH----H-------HHHHHHHHHHTTTSTTT
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC--CHHH----H-------HHHHHHHHHHHHhcCCC
Confidence 11111121123 23333222 34666 78899 9998 1110 0 112233444332 2
Q ss_pred ccchhh--h--cc---chH-HHHHHHHHHHHH
Q psy11743 447 DMPSVF--G--KE---GKK-KELIKKLDEIYK 470 (551)
Q Consensus 447 ~~~~~~--~--~~---~~~-~~l~~~~~~~~~ 470 (551)
..|++. + ++ +.+ ++|++.+.+...
T Consensus 148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 148 DWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred ceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 357766 6 77 888 888888776543
No 399
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.81 E-value=4.4e-06 Score=88.80 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 400
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.80 E-value=8.1e-06 Score=87.24 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++++|+++|.+++|||||+++|.+.. ...+..++.|. ...+.+++..+.|+||||..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~---v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK---VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH---HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC---CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 67899999999999999999999864 22233344442 222445678899999999643
No 401
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.79 E-value=1.2e-05 Score=84.75 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
..+|+++|.+++|||||+|+|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998764
No 402
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.76 E-value=4.1e-05 Score=85.46 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=57.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC-------cccccC------CCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP-------GIHIGP------EPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~-------~~~v~~------~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...+|+++|.+|+||||++|.|+... +. +..+.. ..+.|. ...+.+.+..+.++||||..+-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45689999999999999999998531 10 011111 223331 3345667888999999997541
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
.. .....+..+..++.=.|...|...++ ..++.++|+||+|.+
T Consensus 91 ----~~---~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 91 ----TI---EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp ----HH---HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred ----HH---HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc
Confidence 10 01111112222222223333333333 467889999999995
No 403
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.75 E-value=3.2e-05 Score=80.04 Aligned_cols=61 Identities=18% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~ 364 (551)
...+++++|.||+||||++|.|.+.. .+.++..|+||. ...+.+.+ ..+.++|+||+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~--~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSV--LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST--TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 46799999999999999999999987 248899998884 33344443 357899999998
Q ss_pred cCC
Q psy11743 365 DPK 367 (551)
Q Consensus 365 ~~~ 367 (551)
...
T Consensus 97 ~~~ 99 (392)
T 1ni3_A 97 KGA 99 (392)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 404
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.75 E-value=5e-05 Score=82.01 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=57.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC--c---------cccc------CCCccc---ceEEEEecCCCccccCCce
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP--G---------IHIG------PEPTTD---RFIAVMYDEREGSVPGNAL 362 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~--~---------~~v~------~~~~~t---r~~~~~~~~~~~~l~dt~g 362 (551)
+..+|+++|.+|+||||++|.|++.. +. + ..+. ...|.| ....+.+.+..+.++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35689999999999999999999752 10 0 0111 122333 1334566788899999999
Q ss_pred eecCCCCCchhhhhhhHHHhhhhhhccccC-------cccccccc---------cccceeEEEecccCCC
Q psy11743 363 VVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQ---------TPEVARVYIGSFWDQP 416 (551)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~v~~~~~wd~~ 416 (551)
..+-. ......+..+| +..|...+ ...++.++|+||+|++
T Consensus 92 ~~df~--------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS--------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred ChhHH--------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 85421 11222233333 22332222 2457789999999994
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.75 E-value=8.8e-05 Score=74.83 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.++|+|..|+|||||+|.|++... + .+..++.....+..+.|.++......-....++|.||+...++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~-~---------~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~ 73 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQH-G---------YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL 73 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCC-C---------CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcC-C---------CcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH
Confidence 47899999999999999999998641 0 1122222222122222222111100011223567777765432
Q ss_pred ----------------ccCeEEEeCCCCCCCcccccccccch-HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh
Q psy11743 136 ----------------LKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR 198 (551)
Q Consensus 136 ----------------l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 198 (551)
....+++++-|+..+.. +... + ...........+.++-++|+.+ .......+-...+
T Consensus 74 ~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~--~~~~--~~~~~~~~~~~~l~~~l~~vd~~~--~~~~~~~ls~g~~ 147 (318)
T 1nij_A 74 EDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--IIQT--FFSHEVLCQRYLLDGVIALVDAVH--ADEQMNQFTIAQS 147 (318)
T ss_dssp HHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH--HHHH--HHHSHHHHHHEEEEEEEEEEETTT--HHHHHHHCHHHHH
T ss_pred HHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH--HHHH--HhcCccccCeEEECCEEEEEEHHH--HHHHHhhchHHHH
Confidence 12568888888765221 1000 1 0001112245677888999874 1111111000001
Q ss_pred CCCCcEEEEEcCCCCCCH
Q psy11743 199 GHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 199 ~~~~~vilVlNK~Dl~~~ 216 (551)
+....-++++||.|+.++
T Consensus 148 Q~~~ad~ill~k~dl~de 165 (318)
T 1nij_A 148 QVGYADRILLTKTDVAGE 165 (318)
T ss_dssp HHHTCSEEEEECTTTCSC
T ss_pred HHHhCCEEEEECcccCCH
Confidence 111334667799999975
No 406
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.74 E-value=8.3e-05 Score=68.83 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=38.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCCc--cccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDEREG--SVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~~--~l~dt~gi~~ 365 (551)
..+++++|.+|+||||++|.|.+..+. ....|..+ ....+.+++..+ .+.||||...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~---~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 468999999999999999999998742 22223222 133345555544 4589999754
No 407
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.73 E-value=5.9e-05 Score=73.53 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCcEEEEEeec---------CCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQY---------STGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~---------~~gKss~~n~l~~~ 329 (551)
....+|+++|.+ ||||||++|.|.+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 455799999999 99999999999984
No 408
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.70 E-value=4.2e-05 Score=85.38 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=58.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCC-------cccccC------CCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFP-------GIHIGP------EPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~-------~~~v~~------~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...+|+++|.+|+||||++|.|++. .+. +..+.. .+++|. ...+.+++..+.++||||..+-
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4568999999999999999999963 110 011122 244442 3346677888999999998652
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
. . .....+..+...+.=.|...|...++ ..++.++|+||+|++
T Consensus 89 ~----~---~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 89 T----V---EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp C----H---HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred H----H---HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1 0 00111111111222123333333332 467789999999983
No 409
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.69 E-value=1.7e-05 Score=81.38 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=41.6
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC--------C--ChHHHHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD--------I--SDEFRRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~--------~--~~~~~~~l~~l~~----~~~~ 203 (551)
.+.+|||||... +...+..+.++++++|+|+|.++.+ . ..+...++..+.. .+.|
T Consensus 202 ~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 202 PFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 578999999865 2333445568999999999998521 1 1122334444432 3689
Q ss_pred EEEEEcCCCCC
Q psy11743 204 IRIVLNKADMV 214 (551)
Q Consensus 204 vilVlNK~Dl~ 214 (551)
+++|+||+|+.
T Consensus 271 iILv~NK~DL~ 281 (362)
T 1zcb_A 271 IILFLNKTDLL 281 (362)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999985
No 410
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.69 E-value=2.1e-05 Score=81.93 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=57.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC-------CCcc------cccCCCcccc---eEEEEecCCCccccCCceeecCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD-------FPGI------HIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~-------~~~~------~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
..+|+++|.+++|||||+|+|.+.. +... ......+.|. .......+..+.++||||..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 4689999999999999999999741 1000 0111233442 112334567889999999753
Q ss_pred CchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~~ 416 (551)
| .......+..+|. ..|...|+ ..++. |+|+||+|++
T Consensus 79 ------f----~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 ------Y----VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp ------H----HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred ------H----HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 2 2222333344443 23333332 35664 6889999983
No 411
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.64 E-value=3.5e-05 Score=88.86 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=56.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC-------C------CcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD-------F------PGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~-------~------~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
...+|+++|.+++|||||+|.|.+.. + ...+.....|.|. .......+..+.++||||..+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed--- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD--- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH---
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH---
Confidence 34689999999999999999998741 0 0011112334442 223344567889999999753
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccce-eEEEecccCCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVA-RVYIGSFWDQP 416 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~-~v~~~~~wd~~ 416 (551)
| .......+..+|. ..|...|+ ..++ .|+|+||+|++
T Consensus 372 -------F----~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 -------Y----VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp -------H----HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred -------H----HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 2 2223333444442 33433333 3466 47789999994
No 412
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.59 E-value=0.00026 Score=71.58 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=40.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.++||+|....... ....+.. .+-.+|-.++++|+.. + ....+.+..+.+.-....+++||.|..
T Consensus 212 ~d~vliDtaG~~~~~~~-------l~~eL~~i~ral~~de~llvLDa~t-~--~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRN-------LMDEMKKIARVTKPNLVIFVGDALA-G--NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp CSEEEEEECCSCCTTTC-------HHHHHHHHHHHHCCSEEEEEEEGGG-T--THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred chhhHHhhccchhHHHH-------HHHHHHHHHHHhcCCCCEEEEecHH-H--HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 34788999998653221 2222221 1235899999999874 2 233344444443223457889999975
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 282 a 282 (328)
T 3e70_C 282 A 282 (328)
T ss_dssp S
T ss_pred c
Confidence 4
No 413
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.56 E-value=4.1e-05 Score=78.73 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=42.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eE-EEEe---------------------cCCCccccCCce
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FI-AVMY---------------------DEREGSVPGNAL 362 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~-~~~~---------------------~~~~~~l~dt~g 362 (551)
++++++|.||+||||++|.|.+.. ..++..|.+|. .. ...+ .+..+.++||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~---~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN---ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH---TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 468999999999999999999875 46677777663 21 1222 234588999999
Q ss_pred eecCC
Q psy11743 363 VVDPK 367 (551)
Q Consensus 363 i~~~~ 367 (551)
+....
T Consensus 79 l~~~a 83 (368)
T 2dby_A 79 LVKGA 83 (368)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 98643
No 414
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.55 E-value=3.4e-05 Score=79.76 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~ 364 (551)
.+.+++++|.|||||||++|.|.+.. ..++..|++|. ...+.+.+ ..+.++||||+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ---ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 46789999999999999999999987 47788888884 22233322 347899999998
Q ss_pred cCC
Q psy11743 365 DPK 367 (551)
Q Consensus 365 ~~~ 367 (551)
...
T Consensus 98 ~~a 100 (396)
T 2ohf_A 98 KGA 100 (396)
T ss_dssp ---
T ss_pred ccc
Confidence 643
No 415
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.53 E-value=6.1e-05 Score=79.43 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=38.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCCccc--------------------------ccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIH--------------------------IGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~~~~--------------------------v~~~~~~tr~---~~~~~~~~ 353 (551)
...+|+++|.+++|||||+|+|++. .+.... .....++|.. ......+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999875 221110 0113455532 22445677
Q ss_pred CccccCCceeec
Q psy11743 354 EGSVPGNALVVD 365 (551)
Q Consensus 354 ~~~l~dt~gi~~ 365 (551)
.+.++||||..+
T Consensus 85 ~~~iiDtpG~~~ 96 (435)
T 1jny_A 85 FFTIIDAPGHRD 96 (435)
T ss_dssp EEEECCCSSSTT
T ss_pred EEEEEECCCcHH
Confidence 899999999653
No 416
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.52 E-value=4.5e-05 Score=86.96 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+|+++|.+|+||||++|.|++.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999976
No 417
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=1.6e-05 Score=83.05 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=37.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccC-CCcccc-eEEEEecC----CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDR-FIAVMYDE----REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~-~~~~tr-~~~~~~~~----~~~~l~dt~gi~~ 365 (551)
++++++|++|+|||||+|.|.|..+.+.++.. .++.++ .+...... ..+.+.||+|+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999999765544443 345543 22222222 2467889999865
No 418
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.47 E-value=0.00024 Score=75.24 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.|+|+|.+|+|||||++.|.|.-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44589999999999999999999853
No 419
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.41 E-value=0.00025 Score=79.14 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=60.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC-------cccccC------CCcccc---eEEEEecC-------CCccccC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP-------GIHIGP------EPTTDR---FIAVMYDE-------REGSVPG 359 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~-------~~~v~~------~~~~tr---~~~~~~~~-------~~~~l~d 359 (551)
+..+|+++|.+++||||+++.|+... +. +..+.. ..+.|. ...+.+.+ ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999998642 10 011111 123332 22344555 7789999
Q ss_pred CceeecCCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 360 NALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 360 t~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|||..+-. . .....+..+..++.-.|...|...++ ..++.++|+||+|.+
T Consensus 89 TPG~~df~----~---~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDFT----I---EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccchH----H---HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 99976411 0 00111122223333334444443332 357789999999984
No 420
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.38 E-value=5.7e-05 Score=77.25 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-------CCChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-------DISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-------~~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +......+.++++++|+|+|.+.. .-.... ..+++.+.. .+.|
T Consensus 184 ~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 184 VYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred eeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 588999999865 344455567899999999998610 111222 234444432 3689
Q ss_pred EEEEEcCCCCC
Q psy11743 204 IRIVLNKADMV 214 (551)
Q Consensus 204 vilVlNK~Dl~ 214 (551)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
No 421
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.34 E-value=9.4e-05 Score=77.30 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
..+|+++|.+|+||||++|.|.|..+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45789999999999999999999864
No 422
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.34 E-value=9.7e-05 Score=77.63 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=39.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhC---------------CCCcccccCCCcccc--eEEEEec-----------CCCcccc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER---------------DFPGIHIGPEPTTDR--FIAVMYD-----------EREGSVP 358 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~---------------~~~~~~v~~~~~~tr--~~~~~~~-----------~~~~~l~ 358 (551)
-.|+++|.+++|||||+|+|+|. ...+..++ +++.+ ...+++. +.++.++
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~--~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC--CSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC--CCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 36889999999999999999975 22223333 22221 2334442 2458889
Q ss_pred CCceeecCC
Q psy11743 359 GNALVVDPK 367 (551)
Q Consensus 359 dt~gi~~~~ 367 (551)
||||+.++.
T Consensus 146 DTeG~~~~~ 154 (447)
T 3q5d_A 146 DTQGTFDSQ 154 (447)
T ss_dssp EEECCCSSH
T ss_pred cCCcccccc
Confidence 999999875
No 423
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.29 E-value=0.00035 Score=77.56 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC----c-----ccccCC------Cccc---ceEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP----G-----IHIGPE------PTTD---RFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~----~-----~~v~~~------~~~t---r~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+..+++++|.+++||||+++.|++.... + ..+... .+.| ....+.+.+..+.++||||..+-
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3468999999999999999999965311 1 111111 1223 12334556778889999997531
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCcccccccc---------cccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQ---------TPEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~wd~~ 416 (551)
. ......+..+..++.=.|...|...+ ...++.++|+||.|.+
T Consensus 88 ~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred H-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 0 00111111112222222333333222 2357789999999985
No 424
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.29 E-value=0.00054 Score=68.53 Aligned_cols=25 Identities=36% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.|+|+|++|+||||+++.|.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3589999999999999999999854
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.29 E-value=3.2e-05 Score=75.24 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCCcEEEEEeecCCChhHHHHHHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLL 327 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~ 327 (551)
.+.+.+++.|.+||||||+++.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456788899999999999999998
No 426
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.28 E-value=0.00018 Score=75.64 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=39.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
..++||||||....... ....+. ..+..+|.+++|+|+.. +. +. ...+..+.. ..+ .-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~~~-------l~~~L~~~~~~~~p~~vllVvda~~-g~-~~-~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEA-------MMDEIKQVHASINPVETLFVVDAMT-GQ-DA-ANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHH-------HHHHHHHHHHHSCCSEEEEEEETTB-CT-TH-HHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHH-------HHHHHHHHHHhhcCcceeEEeecch-hH-HH-HHHHHHHhc-cCCCeEEEEecCCC
Confidence 35999999997652111 121111 22447899999999984 42 22 233333332 233 3479999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
..
T Consensus 253 ~~ 254 (433)
T 2xxa_A 253 DA 254 (433)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 427
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.28 E-value=0.00013 Score=77.68 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..++|+++|.+++|||||+|.|+..
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
No 428
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.22 E-value=0.00012 Score=74.18 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=46.9
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.+..+ ..... ..++..+.. .+.|
T Consensus 162 ~l~iwDtaGQe~-----------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 162 PFHLIDVGGQRS-----------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp EEEEEECCSCHH-----------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred eeccccCCCccc-----------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Confidence 578999999854 5666777889999999999997211 12222 233333322 4689
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++++||+|+..
T Consensus 231 iiLv~NK~DL~~ 242 (340)
T 4fid_A 231 KLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999999864
No 429
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.17 E-value=0.00074 Score=68.02 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+++|.+|+||||++..|.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 430
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.14 E-value=0.00079 Score=72.92 Aligned_cols=113 Identities=19% Similarity=0.085 Sum_probs=73.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC-------------CcccccC------CCccc---ceEEEEecCCCccccCCcee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF-------------PGIHIGP------EPTTD---RFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~-------------~~~~v~~------~~~~t---r~~~~~~~~~~~~l~dt~gi 363 (551)
.-+|+|+|....|||||.-.|+-..- .+..+.+ .-|.| ....+.|.+..++|+||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 34799999999999999999874320 0001111 11222 24457789999999999998
Q ss_pred ecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhh
Q psy11743 364 VDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFE 427 (551)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~ 427 (551)
.+-. ....+++.-+| +..|..-|+ ..+++++++||+|.+
T Consensus 111 vDF~--------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~----------- 165 (548)
T 3vqt_A 111 QDFS--------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE----------- 165 (548)
T ss_dssp GGCS--------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC-----------
T ss_pred HHHH--------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch-----------
Confidence 8632 44555555554 556777776 468889999999983
Q ss_pred hhccChhhHHHHHHHHHH
Q psy11743 428 DRSSTSNSVQAYIISALR 445 (551)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~ 445 (551)
..++....+++.+.|.
T Consensus 166 --~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 166 --ALHPLDVMADIEQHLQ 181 (548)
T ss_dssp --CCCHHHHHHHHHHHHT
T ss_pred --hcchhHhhhhhhhhcC
Confidence 2233446677777774
No 431
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00017 Score=72.18 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..-.++|+|++|||||||+|.|+|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 346899999999999999999998653
No 432
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.12 E-value=0.0002 Score=72.22 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC-------CCCCChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH-------KLDISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~-------~~~~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.+ +..-.... ..+++.+.. .+.|
T Consensus 168 ~l~iwDtgGQe~-----------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 168 IFRMVDVGGQRS-----------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEECCSHH-----------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred eeEEEEcCCchh-----------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 578999999854 4445556778999999999765 11112222 233443332 3689
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++++||+|+..
T Consensus 237 iiL~~NK~DL~~ 248 (327)
T 3ohm_A 237 VILFLNKKDLLE 248 (327)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999999854
No 433
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.10 E-value=0.0013 Score=65.45 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.|+++|.+|+||||++..|.+.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998753
No 434
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.05 E-value=0.0019 Score=60.38 Aligned_cols=103 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH---HHHHhC----CCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS---IEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~---l~~l~~----~~~~vilVlNK 210 (551)
++..-.+||-.+ +.....+...++.+.+++|++|||+|+.+....+.-.++ ...+.+ .+.|++|..||
T Consensus 97 k~~~~~~~~~~~-----~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 97 KMFSRHNEGDDQ-----QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hcccccCCCccc-----cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 355666776322 122233566677899999999999999863332322233 222222 36789999999
Q ss_pred C-CCCC---HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 A-DMVD---HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~-Dl~~---~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. |+.. ..++.+. + .|..+ .. .-.+..+||.+|.|+
T Consensus 172 qqDlp~Ams~~EI~e~----L-~L~~l-~R-~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 172 SQGDVKRMPCFYLAHE----L-HLNLL-NH-PWLVQDTEAETLTGF 210 (227)
T ss_dssp SSTTSCBCCHHHHHHH----T-TGGGG-CS-CEEEEEEETTTCTTH
T ss_pred CcCccCCCCHHHHHHH----c-CCcCC-CC-CEEEEEeECCCCcCH
Confidence 5 5643 2333221 1 12222 23 336888999999987
No 435
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.04 E-value=0.0013 Score=65.68 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 347899999999999999999875
No 436
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.87 E-value=0.0006 Score=69.57 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.-.++|+|++|+|||||+|.|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45899999999999999999999753
No 437
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.86 E-value=0.0011 Score=65.11 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.+++++|++|+||||++|.|.|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999873
No 438
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.84 E-value=0.004 Score=64.98 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=39.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+.. .+-.+|.+++|+|+.. + .+ ....+..+...-...-+|+||+|..
T Consensus 181 ~DvVIIDTaG~l~~d~~-------l~~el~~i~~~~~pd~vlLVvDa~t-g-q~-av~~a~~f~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEP-------LMGELARLKEVLGPDEVLLVLDAMT-G-QE-ALSVARAFDEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp CSEEEEECCCCSSCCHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-T-TH-HHHHHHHHHHHTCCCEEEEESGGGC
T ss_pred CCEEEEcCCCcccccHH-------HHHHHHHhhhccCCceEEEEEeccc-h-HH-HHHHHHHHHhcCCceEEEEeCcCCc
Confidence 35899999997652110 1222211 1236899999999974 3 22 2233333332112356789999975
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 439
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.82 E-value=0.01 Score=62.07 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.9
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
..|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 478899999999999999776
No 440
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.77 E-value=0.0015 Score=65.14 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+|+++|.+|+||||++|.|.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999987
No 441
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.70 E-value=0.00051 Score=71.22 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=46.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC----------CCChHHHHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL----------DISDEFRRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.+.++++|+|+|.++. ........++..+.. .+.|
T Consensus 218 ~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 218 NFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred cceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 578999999864 344555667899999999999851 111122344444433 3578
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++|+||+|+..
T Consensus 287 iiLvgNK~DL~~ 298 (402)
T 1azs_C 287 VILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEEChhhhh
Confidence 999999999853
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.66 E-value=0.003 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++++|++|+|||||+|.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 44689999999999999999999 54
No 443
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.48 E-value=0.011 Score=54.49 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=46.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilVlNK~ 211 (551)
..+++||||+... ......+..+|.+++++.+.. .. .....+++.+.+. +.++.+|+|++
T Consensus 76 yD~viiD~~~~~~-------------~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS-------------VITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS-------------HHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC-------------HHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4589999998653 123455678999999999985 33 5556777777654 35679999999
Q ss_pred CCC
Q psy11743 212 DMV 214 (551)
Q Consensus 212 Dl~ 214 (551)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 964
No 444
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.44 E-value=0.0015 Score=72.17 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=63.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCC--C-------CcccccCCC------ccc---ceEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD--F-------PGIHIGPEP------TTD---RFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~--~-------~~~~v~~~~------~~t---r~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+|+|....|||||.-.|+... + .+..+.+.- |.| ......|++..++|+||||-.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D---- 79 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD---- 79 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS----
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH----
Confidence 58999999999999999997441 0 011111111 122 1233567899999999999875
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------cccccccccc---------cceeEEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQTP---------EVARVYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~~~v~~~~~wd~~ 416 (551)
|.....+++.-+| +..|..-|+. .++.|+++||+|.+
T Consensus 80 ----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 80 ----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp ----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred ----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 3345555555554 5667777763 57779999999984
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.42 E-value=0.0029 Score=63.10 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..-.++++|++|+|||||+|.|.|...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 446899999999999999999999764
No 446
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.39 E-value=0.0049 Score=61.25 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.++++|.+|+||||++..|.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999875
No 447
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.09 E-value=0.0033 Score=58.81 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=23.4
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.....-.++|+|++|+|||||++.|.|..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455689999999999999999999964
No 448
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.00 E-value=0.0094 Score=59.86 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=34.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCccc--ccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIH--IGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~--v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+++++|..||||||+++.+.+.-.+... +++..+.. ...+ ...-.+.+.||||-.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~-~~~v-~~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LEHF-STLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC-CEEE-CSSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeee-eEEE-ccEEEEEEEECCCchh
Confidence 4789999999999999988765432211 12222222 1112 1234567889999764
No 449
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.93 E-value=0.0092 Score=62.04 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=37.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC--CcccccCCCcccc-eEEEEec-CCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF--PGIHIGPEPTTDR-FIAVMYD-EREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~--~~~~v~~~~~~tr-~~~~~~~-~~~~~l~dt~gi~~~ 366 (551)
....++++|++|+||||++|.|.|..- .|........+|+ ....... ..++.+.|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 456899999999999999999999521 1222222222333 2222222 235778899998653
No 450
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.89 E-value=0.0041 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.++|+|++|+|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
No 451
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.86 E-value=0.0038 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..++|+|++|+|||||++.|+|..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999853
No 452
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0049 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..++|+|++|+|||||++.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999864
No 453
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.75 E-value=0.0061 Score=56.71 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
+....|+|+|++|+|||||+++|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999864
No 454
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.62 E-value=0.075 Score=49.56 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=44.6
Q ss_pred cCeEEEeCCCC-CCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGI-LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi-~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~vilVlNK~Dl~ 214 (551)
..+++||||+. ... .+..++..+|.+++++.+.. ........+++.+.. .+.++.+|+|++|..
T Consensus 68 yD~viiD~p~~~~~~-------------~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-------------DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSSS-------------HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCcH-------------HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 35899999986 431 23456688999999999873 222223455566655 256788999999976
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 4
No 455
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.58 E-value=0.0074 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.++|+|++|+|||||++.|.|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999986
No 456
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.45 E-value=0.0072 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++|+|++|+|||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999954
No 457
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.0088 Score=56.63 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++|+|++|+|||||++.|+|..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34579999999999999999999975
No 458
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.38 E-value=0.0075 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.++|+|++|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999864
No 459
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.37 E-value=0.02 Score=63.88 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=59.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC-----C----CcccccCC------Cccc-c--eEEEEec-------CCCccccCCc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD-----F----PGIHIGPE------PTTD-R--FIAVMYD-------EREGSVPGNA 361 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~-----~----~~~~v~~~------~~~t-r--~~~~~~~-------~~~~~l~dt~ 361 (551)
-.|+|+|....|||||.-.|+-.. . .+..+.+. -|.| + .+...|. +..++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 379999999999999999887441 0 01111111 1122 1 2223342 4568899999
Q ss_pred eeecCCCCCchhhhhhhHHHhhhhhhcccc-------Cccccccccc---------ccceeEEEecccCCC
Q psy11743 362 LVVDPKKQFRPLDKFGNSFLNRFQCSLVNS-------PVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 362 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|-.+ |.....+++.-+ |+..|..-|+ ..++.|+++||.|.+
T Consensus 94 GHvD--------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVD--------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTT--------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred CCcc--------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 9876 234444444444 5677888777 367889999999984
No 460
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.37 E-value=0.0096 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+|+|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999986
No 461
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.31 E-value=0.0087 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++|+|||||++.|.+.-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999864
No 462
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.29 E-value=0.0082 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999865
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.27 E-value=0.011 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.++++|+.|+|||||++.|.|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999975
No 464
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.23 E-value=0.0091 Score=57.15 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455689999999999999999999865
No 465
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.13 E-value=0.01 Score=56.99 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.. -.++|+|++|+|||||++.|.|-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 689999999999999999999965
No 466
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.12 E-value=0.013 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+.++|+|.+|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999986
No 467
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.12 E-value=0.029 Score=55.64 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=40.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEE-EEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIR-IVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vi-lVlNK~ 211 (551)
..++|||||+..... .+..++..+|.+++|+++.. ........+++.+.. .+.+++ +|+|++
T Consensus 157 yD~ViiD~p~~~~~~------------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 157 TDVVIFDVLGDVVCG------------GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp CSEEEEEECCSSCCG------------GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred CCEEEEeCCCccchH------------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecC
Confidence 468999998765411 11123578999999998873 212233455666654 344444 899999
Q ss_pred CC
Q psy11743 212 DM 213 (551)
Q Consensus 212 Dl 213 (551)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 95
No 468
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.013 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++|+||||+++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999998864
No 469
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.10 E-value=0.013 Score=54.66 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...|+|+|++|+||||+++.|++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999874
No 470
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.03 E-value=0.013 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...|+|+|++|+|||||++.|.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999985
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.99 E-value=0.011 Score=58.12 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999999865
No 472
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.99 E-value=0.011 Score=57.47 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999865
No 473
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.97 E-value=0.011 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445689999999999999999999864
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.97 E-value=0.0098 Score=56.11 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999865
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.96 E-value=0.011 Score=56.29 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999999975
No 476
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.95 E-value=0.011 Score=57.00 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999999875
No 477
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.94 E-value=0.01 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.++|+|++|+|||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999997
No 478
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.94 E-value=0.012 Score=57.17 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.8
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....-.++|+|++|+|||||++.|+|.-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445689999999999999999999853
No 479
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.94 E-value=0.013 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...-.++|+|++|+|||||++.|.|-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999996
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.94 E-value=0.011 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355689999999999999999999965
No 481
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.93 E-value=0.0069 Score=56.33 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EEecCCCccccCCcee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPGNALV 363 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~~~~~~~~l~dt~gi 363 (551)
++..++++|++|+||||++|.|++.. +.......+.|||... -..++..+.++|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~-~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN-PEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC-TTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC-CccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 45578999999999999999999874 1233445556666321 2244555666655543
No 482
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.93 E-value=0.087 Score=57.37 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=27.1
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 172 VDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 172 aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
.+.+++|..+.. ....+....++.+...+.+ .-+|+|++...
T Consensus 198 ~t~vvlV~~~~~-~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 198 RTRLVLVARLQK-STLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp TEEEEEEEESCH-HHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred CcEEEEEeCCCc-cHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 347888988763 3334445666667665554 45789999754
No 483
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.92 E-value=0.013 Score=56.24 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999999864
No 484
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.92 E-value=0.011 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
..-.++++|++|+|||||++.+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345799999999999999997653
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.89 E-value=0.016 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|--
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999864
No 486
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.89 E-value=0.012 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999865
No 487
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.87 E-value=0.013 Score=57.16 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...-.++|+|++|+|||||++.|+|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999996
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.85 E-value=0.012 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345589999999999999999999875
No 489
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.84 E-value=0.013 Score=56.96 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999999865
No 490
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.79 E-value=0.013 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455689999999999999999999863
No 491
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.75 E-value=0.015 Score=56.73 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455689999999999999999999865
No 492
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.01 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|+|+|++|+|||||++.|++.-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999864
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.71 E-value=0.014 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999975
No 494
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.70 E-value=0.0037 Score=59.72 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~D 212 (551)
..++|||||+.... ....++..+|.+++|+++.... ......+.+.+.+.+ ..+.+|+|+++
T Consensus 132 yD~viiD~pp~~~~-------------~~~~~l~~aD~viiv~~~~~~s-~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH-------------LTRGTAKAVDMMIAVIEPNLNS-IKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT-------------CCHHHHTTCSEEEEEECSSHHH-HHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH-------------HHHHHHHHCCEEEEecCCCHHH-HHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 46899999876541 1234568899999999987411 122234444444444 45789999998
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.68 E-value=0.014 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999999865
No 496
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.68 E-value=0.016 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999865
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.64 E-value=0.015 Score=56.78 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999999865
No 498
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.59 E-value=0.016 Score=53.54 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.++|+|++|+|||||++.|.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999853
No 499
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.59 E-value=0.018 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg 78 (551)
.++|+|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
No 500
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.58 E-value=0.019 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++||||||+.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998754
Done!