RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11743
(551 letters)
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 386 bits (991), Expect = e-128
Identities = 213/394 (54%), Positives = 255/394 (64%), Gaps = 19/394 (4%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ K PE TV LK++Y+ KLLPLE+ Y F FHSP EDADFD KP
Sbjct: 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPM 67
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV--------PFS 110
V++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+V P
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + + VL+ ISI+DTPGILSG KQRV RGYDF VL WFAE
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAE 187
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVD IILLFDAHKL+ISDEF +I ALRGH+DKIR+VLNKADMV+ QQLMRVYGALMW+L
Sbjct: 188 RVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GKV+ TPEV RVYIGSFW QPL+ NRRLFE EEQDLF+D+Q LPR+AALRKLNDL+KR
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKR 307
Query: 291 ARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 350
ARL + + K + G+ + K L P I
Sbjct: 308 ARLVRVHAYIISYLKKEMPTVFGKENKKKQ------LILKLPVIF---AKIQLEHHISPG 358
Query: 351 DEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384
D + L+ +F L L+
Sbjct: 359 DFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDM 392
Score = 158 bits (400), Expect = 3e-42
Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 250 QPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTV 309
L R + + + L+ L R L L + + EDADFD KP V
Sbjct: 10 SWLKKGGARGQRPEAIRTVTSSLKELYRTK-LLPLEEHYRFGSFHSPALEDADFDGKPMV 68
Query: 310 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369
++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+VPGNALVVDP+K
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKP 128
Query: 370 FRPLDKFGNSFLNRFQCSLVNSPVLKGKVL 399
FR L+ FGN+FLNRF C+ + + VL+ +
Sbjct: 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISI 158
Score = 87.9 bits (217), Expect = 1e-18
Identities = 74/158 (46%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 396 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKE 455
GKV+ TPEV RVYIGSFW QPL+ NRRLFE + I R
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEE---QDLFRDIQGLPRHAALRKLNDL 304
Query: 456 GKKKELIKKLDEIYKQIQREYQISPVFGKK---KELIKKLDEIYKQIQREYQISPGDFPK 512
K+ L++ I +++E VFGK+ K+LI KL I+ +IQ E+ ISPGDFP
Sbjct: 305 VKRARLVRVHAYIISYLKKEMP--TVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPD 362
Query: 513 VEKMQELLQHHDFTKFQTLRPRLIEVADKMLAEDIAHL 550
+KMQELL HDFTKF +L+P+L+E D MLA+DIA L
Sbjct: 363 CQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKL 400
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 4e-11
Identities = 60/427 (14%), Positives = 125/427 (29%), Gaps = 117/427 (27%)
Query: 149 SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208
+GE Q Y + +L F D + FD D+ D + +L
Sbjct: 11 TGEHQ-----YQYKDILSVF---EDAFVDNFDCK--DVQDMPKS--------------IL 46
Query: 209 NKADMVDH-----QQLMRVYGALMWSLGKVLQTPEVARVYIGSF------W------DQP 251
+K + +DH + L W+L + + E+ + ++ + +
Sbjct: 47 SKEE-IDHIIMSKDAVSGTL-RLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 252 LVHDVNRRLFEDEEQDLFKDLQSL-----PRNAALRKLNDLIKRARLAKAPYEDADFDAK 306
+ R++ ++ L+ D Q R KL + R A
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKN-------- 152
Query: 307 PTVMLVGQYSTGKTTFI-----RYLLERDFPG----IHIGPEPTTDRFIAVMYDEREGSV 357
V++ G +GKT Y ++ +++ + + + ++
Sbjct: 153 --VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 358 PGNALVVDPKKQFRPLDKFGNSFLNRF-------QCSLV-----NSPVLKG-----KVLQ 400
P D + + L R C LV N+ K+L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 401 T---PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP-------- 449
T +V + + + L D S+ + +D+P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNP 327
Query: 450 ---SVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKK-LDEIYKQIQREYQI 505
S+ + ++ + D +K + + K +I+ L+ + R+
Sbjct: 328 RRLSIIAES--IRDGLATWDN-WKHVNCD--------KLTTIIESSLNVLEPAEYRKMFD 376
Query: 506 SPGDFPK 512
FP
Sbjct: 377 RLSVFPP 383
Score = 59.9 bits (144), Expect = 1e-09
Identities = 78/520 (15%), Positives = 152/520 (29%), Gaps = 165/520 (31%)
Query: 4 WMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVG 63
W++ +SPE TVLE L+K+ ++ + HS +
Sbjct: 186 WLNLKNCNSPE---TVLEMLQKLLYQ----IDPNWTSRSDHSSNIKL------------- 225
Query: 64 QYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFL 123
+ + + R L + + + V+ + + + F
Sbjct: 226 RIHSIQAELRRLLKSKPYE-----------NCLLVLLNVQNAKA----WNAFN------- 263
Query: 124 NRFQC-SLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182
C L+ + + + D LS + L E L
Sbjct: 264 --LSCKILLTT---RFKQVTD---FLSAATTTHISLDHHSMTLT-PDEVKS----LL-LK 309
Query: 183 KLDIS-DEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVAR 241
LD + R E L + ++ I+ A+ + G W K + ++
Sbjct: 310 YLDCRPQDLPR--EVLTTNPRRLSII---AESIRD-------GLATWDNWKHVNCDKLTT 357
Query: 242 VYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNA-----ALRKL------------ 284
+ I S + L E + +F L P +A L +
Sbjct: 358 I-IESSLNV---------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 285 -NDLIKRARLAKAPYE------DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG 337
N L K + + K P E + K + +Y+ ++ Y + + F +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 338 PEPTTDRFIA--VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN-RF-------QCS 387
P P D++ + + + + + F FL+ RF +
Sbjct: 466 P-PYLDQYFYSHIGHH------------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 388 LVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFED-------------RSSTSN 434
N+ G +L T + + Y D RL S ++
Sbjct: 513 AWNAS---GSILNTLQQLKFYKPYICDN---DPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 435 SVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQR 474
++ AL + ++F +E +KQ+QR
Sbjct: 567 LLR----IALMAEDEAIF-------------EEAHKQVQR 589
Score = 55.6 bits (133), Expect = 3e-08
Identities = 87/564 (15%), Positives = 166/564 (29%), Gaps = 147/564 (26%)
Query: 35 EQAYHFHDFHSPPYEDA---DFDAKPTV-MLVGQYSTGKTTFIRYLLERDFPGIHIGPEP 90
E Y + D +EDA +FD K M S + I ++ +D
Sbjct: 13 EHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKD-------AVS 62
Query: 91 TTDRFIAVMYDEREGSVP-F--SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGI 147
T R + ++E V F L KF ++ + + P + ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIK-TEQRQPSMMTRMYIEQRDR 118
Query: 148 LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207
L + Q + V R+ KL R+++ LR + ++
Sbjct: 119 LYNDNQVFAKYN------------VSRLQPY---LKL------RQALLELRPAKN---VL 154
Query: 208 LN------KADMV-----DHQQLMRVYGALMW-SLGKVLQTPE-----VARVY--IGSFW 248
++ K + ++ ++ + W +L +PE + ++ I W
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNW 213
Query: 249 DQPLVHDVNRRLFEDEEQDLFKDLQSLPRNA-ALRKLNDLIKRARLAKAPYEDADFDAKP 307
H N +L Q + L L L + ++ A+ A F+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA------FNLSC 266
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP---EPTTDRFIAVMYDEREGSVPGNALVV 364
++L ++ T F+ H + D R +P L
Sbjct: 267 KILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 365 DPKKQFRPLDKFGNS---FLNRFQ------CSLVNSPVLKG--KVLQTPEVARVY----- 408
+P R L S L + C + + +++ VL+ E +++
Sbjct: 326 NP----RRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSV 380
Query: 409 -----------IGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGK 457
+ W + DV + + S + K KE
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQ-----PKEST 425
Query: 458 KK------ELIKKLDEIY---KQIQREYQISPVFGKKKELIKKLDE-IYKQIQREYQISP 507
EL KL+ Y + I Y I F + LD+ Y I +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HH--- 480
Query: 508 GDFPKVEKMQELLQHHDFTKFQTL 531
++ + T F+ +
Sbjct: 481 --------LKNIEHPERMTLFRMV 496
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 58.8 bits (141), Expect = 3e-09
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 38/193 (19%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSP- 111
++++G GK+TF+ L+ + P P T + Y +
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLP---SDVNPCTAVLTVLRYGPEKKVTIHFND 123
Query: 112 -------------------------LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPG 146
L++ K ++ + + KGI IVD+PG
Sbjct: 124 GKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPG 183
Query: 147 ILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRI 206
+ E + + + I+ + A + E R ++G +
Sbjct: 184 LNDTEAR--------NELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF 235
Query: 207 VLNKADMVDHQQL 219
++N D V +
Sbjct: 236 LVNAWDQVRESLI 248
Score = 40.7 bits (94), Expect = 0.001
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 15/99 (15%)
Query: 258 RRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYST 317
E L + + K + ++++G
Sbjct: 32 AETINKAELAGDSSSGKLSLERDIEDITIASKNLQ-----------QGVFRLLVLGDMKR 80
Query: 318 GKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREG 355
GK+TF+ L+ + P P T + Y +
Sbjct: 81 GKSTFLNALIGENLLP---SDVNPCTAVLTVLRYGPEKK 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 103/597 (17%), Positives = 167/597 (27%), Gaps = 215/597 (36%)
Query: 31 LLPLEQAYHFH------DFHS---PPYEDADFDAKPT--VMLVGQY-----------STG 68
L+P A F F+ P E D +PT LVG++ G
Sbjct: 21 LVP--TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 69 KTT---------FIR-YLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
+ F YL D IH A + E + ++ K
Sbjct: 79 QFDQVLNLCLTEFENCYLEGND---IH--------ALAAKLLQENDTTLV--------KT 119
Query: 119 GNSFLNRFQ-CSLVNSPVLKGISIVDTPGILSGEKQRVDRG----YD-FTG---VLEWFA 169
N + P K + L + V G F G ++F
Sbjct: 120 KELIKNYITARIMAKRPFDKK-----SNSALF---RAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
E D L+ + + + D + S E L L + + + + L W
Sbjct: 172 ELRD----LYQTYHVLVGDLIKFSAETLSE--------LIRTTLDAEKVFTQGLNILEW- 218
Query: 230 LGKVLQTPE-------VARVYIGSFWDQP------LVH-DVNRRLFEDEEQDLFKDLQSL 275
L+ P + + I S P L H V +L +L L+
Sbjct: 219 ----LENPSNTPDKDYLLSIPI-SC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLK-- 268
Query: 276 PRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIH 335
A L+ +A+ F + + + I L F
Sbjct: 269 ---GATGHSQGLVTAVAIAETD-SWESF-----------FVSVRK-AITVL----F---F 305
Query: 336 IGPE-----PTTDRFIAVMYDEREGS--VPGNALVVD--PKKQ-FRPLDKFGNSFL---N 382
IG P T +++ D E + VP L + ++Q ++K NS L
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGK 364
Query: 383 RFQCSLVNSP---VLKG--KVLQ--TPEVARVYIGSFWDQPLVHDVNRRLFEDR------ 429
+ + SLVN V+ G + L + + S DQ +R F +R
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ------SRIPFSERKLKFSN 418
Query: 430 ----------SSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQIS 479
S I L K+ K++ QI
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKN-----NVSFNAKDI---------QI------- 457
Query: 480 PVF----GK-----KKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHH--DF 525
PV+ G + +++ I R P + + + H DF
Sbjct: 458 PVYDTFDGSDLRVLSGSISERI---VDCIIRL----PVKWETTTQFKA---THILDF 504
Score = 52.0 bits (124), Expect = 5e-07
Identities = 66/339 (19%), Positives = 108/339 (31%), Gaps = 124/339 (36%)
Query: 71 TFIRYLLERDFPGIHIGPE-----PTTDRFIAVMYDEREGS--VPFSP-----------L 112
I L F IG P T +++ D E + VP SP +
Sbjct: 298 KAITVL----F---FIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQV 349
Query: 113 DKFGKFGNSFL---NRFQCSLVNSP---VLKGISIVDTPGILSG-----EKQRVDRGYDF 161
+ NS L + + SLVN V+ G P L G K + G D
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-----PPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 162 TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA-DMVDHQQLM 220
+ + F+ER + F L ++ F H +L A D+++ + L+
Sbjct: 405 SRIP--FSERKLKFSNRF----LPVASPF---------HSH----LLVPASDLIN-KDLV 444
Query: 221 RVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAA 280
+ + ++ K +Q P VY +D DL+ L +
Sbjct: 445 K--NNVSFN-AKDIQIP----VY--DTFDG-------------------SDLRVLSGS-I 475
Query: 281 LRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPE 339
++ D I R + ++ T T + DF PG G
Sbjct: 476 SERIVDCIIRLPV--------KWET--TT------QFKATHIL------DFGPGGASGLG 513
Query: 340 PTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGN 378
T R ++G+ G ++V P D +G
Sbjct: 514 VLTHR-------NKDGT--GVRVIVAGTLDINPDDDYGF 543
Score = 40.8 bits (95), Expect = 0.001
Identities = 64/320 (20%), Positives = 107/320 (33%), Gaps = 111/320 (34%)
Query: 286 DLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE--RDFPG---IHIGPEP 340
DL K ++ A+ + AD K T G +S +L+ + P IH G E
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDT---YG-FS---------ILDIVINNPVNLTIHFGGE- 1679
Query: 341 TTDRFIAVMYDE--REGSVPGNALVVDPKKQFRPLDK------FG--NSFLNR--F-Q-C 386
+ I Y E V G + +K F+ +++ F L+ F Q
Sbjct: 1680 -KGKRIRENYSAMIFETIVDGK---LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 387 SLVNS----PVLKGKVLQTPEVARVYIG----------------SFWDQPLVHDVNRR-- 424
+ LK K L P A + G S LV V R
Sbjct: 1736 LTLMEKAAFEDLKSKGL-IPADA-TFAGHSLGEYAALASLADVMSIES--LVEVVFYRGM 1791
Query: 425 -----LFEDRSSTSNSVQAYIISALRKD-MPSVFGKEGKKKELIKKLDEIYKQIQREYQI 478
+ D SN Y + A+ + + F +E L + +++ +
Sbjct: 1792 TMQVAVPRDELGRSN----YGMIAINPGRVAASFSQEA--------LQYVVERVGKR--- 1836
Query: 479 SPVFGKKKELIKKLDEI--Y----KQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLR 532
L+ EI Y +Q Y + GD ++ + +L +F K Q +
Sbjct: 1837 ------TGWLV----EIVNYNVENQQ----YVAA-GDLRALDTVTNVL---NFIKLQ--K 1876
Query: 533 PRLIEVADKMLAEDI-AHLL 551
+IE+ + E++ HL
Sbjct: 1877 IDIIELQKSLSLEEVEGHLF 1896
Score = 36.6 bits (84), Expect = 0.027
Identities = 42/178 (23%), Positives = 58/178 (32%), Gaps = 60/178 (33%)
Query: 24 KKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG 83
K + N+ LP+ FHS A L+ +D
Sbjct: 413 KLKFSNRFLPV-----ASPFHSHLLVPA----------------------SDLINKDLVK 445
Query: 84 IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNR-FQCSLVNSPV------- 135
++ D I V YD +GS D S R C ++ PV
Sbjct: 446 NNVSFNAK-DIQIPV-YDTFDGS------D-LRVLSGSISERIVDC-IIRLPVKWETTTQ 495
Query: 136 LKGISIVD-TPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS--DEF 190
K I+D PG SG R D TGV R+I+ A LDI+ D++
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGV---------RVIV---AGTLDINPDDDY 541
Score = 35.4 bits (81), Expect = 0.051
Identities = 32/165 (19%), Positives = 50/165 (30%), Gaps = 59/165 (35%)
Query: 47 PYEDADFDAKPTVMLV---GQYSTGKTTFIRYLLERDFPG------IHIGPEPTTDRFIA 97
E V +V G ++ + RD G I I P R A
Sbjct: 1778 SIESL-------VEVVFYRGM-------TMQVAVPRDELGRSNYGMIAINP----GRVAA 1819
Query: 98 VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN--SPVLKGISIVDTPGILSGEKQRV 155
E V +++ GK +VN V +G+ + +
Sbjct: 1820 SFSQEALQYV----VERVGKRTGWL-----VEIVNYNVE---NQQYV-----AAGDLRAL 1862
Query: 156 DRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH 200
D T VL + + +I D +L S S+E + GH
Sbjct: 1863 DT---VTNVLNFIKLQ--KI----DIIELQKS----LSLEEVEGH 1894
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 43.8 bits (103), Expect = 6e-05
Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 55/241 (22%)
Query: 39 HFHDFHSPPYEDADFDAKP----------TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP 88
H H HS E+ F P ++LVG+ GK+ +L R
Sbjct: 2 HHHHHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA 61
Query: 89 EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGIL 148
+ T + +E + +VDTPGI
Sbjct: 62 KSITKKCEKRSSSWKETE--------------------------------LVVVDTPGIF 89
Query: 149 SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRGHD--DKIR 205
E + + + + ++L+ + + I + G +
Sbjct: 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMI 149
Query: 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEE 265
++ + D + L + + PE + + F D+ + E E
Sbjct: 150 LIFTRKDDLGDTNLHD----------YLREAPEDIQDLMDIFGDRYCALNNKATGAEQEA 199
Query: 266 Q 266
Q
Sbjct: 200 Q 200
Score = 31.5 bits (71), Expect = 0.61
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 289 KRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAV 348
+ P +++ ++LVG+ GK+ +L R + T +
Sbjct: 12 ENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKR 71
Query: 349 MYDEREGSVPGNALVVD 365
+E + +VVD
Sbjct: 72 SSSWKETEL----VVVD 84
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 40.1 bits (93), Expect = 0.001
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDRFIAVMYDEREGSVPGNALV 363
T+M+VG+ GK+T I L D T + +EG V +
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69
Query: 364 VD 365
VD
Sbjct: 70 VD 71
Score = 36.3 bits (83), Expect = 0.016
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDRFIAVMYDEREGSVPFS 110
T+M+VG+ GK+T I L D T + +EG V
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 39.2 bits (91), Expect = 0.002
Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 55/248 (22%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKF 115
++L+G+ +GK++ + T D
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID---------------------- 40
Query: 116 GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRI 175
+ S + +++ D G Q V FT + + V +
Sbjct: 41 ----------VEHSHLRFLGNMTLNLWDCGG------QDVFMENYFTKQKDHIFQMVQVL 84
Query: 176 ILLFDAHKLDISDE---FRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
I +FD ++ + F ++++ LR + D KI ++L+K D+V + ++ +M +L
Sbjct: 85 IHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNL 144
Query: 231 GKVL--QTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLI 288
+ + S WD+ L ++ + L ++ + N L
Sbjct: 145 SETSSEFGFPNLIGFPTSIWDESLYKAWSQIV-----CSLIPNMSNHQSN-----LKKFK 194
Query: 289 KRARLAKA 296
+ +
Sbjct: 195 EIMNALEI 202
Score = 29.2 bits (65), Expect = 3.3
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343
++L+G+ +GK++ + T D
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID 40
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 38.4 bits (89), Expect = 0.003
Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 48/207 (23%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLD 113
+KP ++L+G +GK++ + + + P + E T
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST---------------------- 55
Query: 114 KFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVD 173
N+ +++ I D PG + D F G
Sbjct: 56 ----------NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG--------TG 97
Query: 174 RIILLFDAHKLDISD--EFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWS 229
+I + DA + ++ D + ++K D + + +
Sbjct: 98 ALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR 157
Query: 230 LGKVLQTPEVARVYIG----SFWDQPL 252
L + ++++ S +D +
Sbjct: 158 ANDDLADAGLEKLHLSFYLTSIYDHSI 184
Score = 29.9 bits (67), Expect = 1.5
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343
+KP ++L+G +GK++ + + + P + E T
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK 57
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 38.2 bits (88), Expect = 0.005
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-----TDRFIAVMYDEREGSVPGNAL 362
T+M+VG+ GK+T I L D + T + A + E V
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79
Query: 363 VVD 365
VVD
Sbjct: 80 VVD 82
Score = 34.8 bits (79), Expect = 0.060
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92
T+M+VG+ GK+T I L D +
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAE 54
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 37.8 bits (89), Expect = 0.006
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 142 VDTPGILSGEKQRVDRGYDFTGVLEWFAER----VDRIILLFDAHKLDISDEFRRSIEAL 197
VDTPG+ EK+ ++R ++ A V+ +I + + + DE + L
Sbjct: 61 VDTPGLHMEEKRAINR------LMNKAASSSIGDVELVIFVVEGTRWTPDDEMV--LNKL 112
Query: 198 RGHDDKIRIVLNKADMVDHQQ 218
R + + +NK D V +
Sbjct: 113 REGKAPVILAVNKVDNVQEKA 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 38.2 bits (88), Expect = 0.006
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365
++ VG+ GK+T + L F G + + YD +E +V +V
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Score = 35.9 bits (82), Expect = 0.031
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP 108
++ VG+ GK+T + L F G + + YD +E +V
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 37.6 bits (87), Expect = 0.009
Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 50/199 (25%)
Query: 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219
DF +L E ++ + D D + F + + + +V NKAD++
Sbjct: 60 DFLSMLHRIGESKALVVNIVDI--FDFNGSFIPGLPRFAADNPIL-LVGNKADLLP---- 112
Query: 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFK-DLQSLPRN 278
V + + RR+ E+ L S +
Sbjct: 113 -----------------RSVKYPKLLRWM---------RRMAEELGLCPVDVCLVSAAKG 146
Query: 279 AALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDF---PGIH 335
+ K+ + I R R V +VG + GK+TFI ++E I
Sbjct: 147 IGMAKVMEAINRYR------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVIT 194
Query: 336 IGPEP-TTDRFIAVMYDER 353
P TT I + +
Sbjct: 195 TSYFPGTTLDMIEIPLESG 213
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 36.5 bits (85), Expect = 0.020
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 139 ISIVDTPGILSGEK---QRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE 195
+++VDTPG+ + RV++ V R D IL+ D+ D+ +
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARR---VFY----RADCGILVTDSAPTPYEDDV---VN 134
Query: 196 ALRGHDDKIRIVLNKADMVDHQQ 218
+ + +V+NK D++ +
Sbjct: 135 LFKEMEIPFVVVVNKIDVLGEKA 157
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 36.4 bits (85), Expect = 0.023
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 14/91 (15%)
Query: 135 VLKGIS--IVDTPGILSG----EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 188
+ + DT G+ E + + R D I+ L D + D
Sbjct: 277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK-------MAEADLILYLLDLGTERLDD 329
Query: 189 EFRRSIEALRGHDDKIRI-VLNKADMVDHQQ 218
E E H + V NK D +
Sbjct: 330 ELTEIRELKAAHPAAKFLTVANKLDRAANAD 360
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.4 bits (80), Expect = 0.036
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 135 VLKGIS--IVDTPGILSG----EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 188
+ G+ I+DT G+ E+ ++R + E+ DR++ + D D D
Sbjct: 48 HIDGMPLHIIDTAGLREASDEVERIGIERAWQE-------IEQADRVLFMVDGTTTDAVD 100
Query: 189 --EFRRSIEALRGHDDKIRIVLNKADMVDHQQLMR 221
E A I +V NKAD+ M
Sbjct: 101 PAEIWPEFIARLPAKLPITVVRNKADITGETLGMS 135
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 35.1 bits (80), Expect = 0.052
Identities = 30/246 (12%), Positives = 58/246 (23%), Gaps = 50/246 (20%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYLLER---DFPGIHIGPEPTTDRFIAVMYDEREGSVPFS 110
+ V + G+ +GK++FI L + G T +
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH---------- 116
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P + + D PGI G Y + +
Sbjct: 117 -----------------------PNIPNVVFWDLPGI--GSTNFPPDTY----LEKMKFY 147
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
D I++ + +A+ + V K D +
Sbjct: 148 EYDFFIIISATRFKKNDIDI---AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEK 204
Query: 231 GKVLQTPEVARVYIGSFWDQPLV-----HDVNRRLFEDEEQDLFKDLQSLPRNAALRKLN 285
+ + +P + +V F L DL R+ + L
Sbjct: 205 VLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLP 264
Query: 286 DLIKRA 291
++
Sbjct: 265 NITDSV 270
Score = 30.4 bits (68), Expect = 1.5
Identities = 32/277 (11%), Positives = 81/277 (29%), Gaps = 30/277 (10%)
Query: 251 PLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVM 310
+ + + ++ + +++ ++D +K + V
Sbjct: 25 KKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEID-----------SSVLNVA 73
Query: 311 LVGQYSTGKTTFIRYLLER---DFPGIHIGPEPTTDRFIAVMYDEREG----SVPGNALV 363
+ G+ +GK++FI L + G T + +PG
Sbjct: 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133
Query: 364 VDPKKQFRPLDKFGNS--FLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDV 421
P + KF F+ + + K + + ++ + D + ++
Sbjct: 134 NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEA 193
Query: 422 NRRLFE-DRSSTSNSVQAYIISALRK---DMPSVFGKEGKKK------ELIKKLDEIYKQ 471
+ D+ ++ ++ R+ P +F K L+ KL
Sbjct: 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253
Query: 472 IQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPG 508
+R + + +I+K + KQ +
Sbjct: 254 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAAD 290
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 34.8 bits (80), Expect = 0.062
Identities = 37/184 (20%), Positives = 60/184 (32%), Gaps = 66/184 (35%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKF 115
PTV++ G + GK+T ++ L I P T R I V E
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPE---IASYPFTTRGINVGQFEDGY---------- 213
Query: 116 GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGIL--------SGEKQRVDRGYDFTGVLEW 167
R+Q I+DTPG+L EKQ +
Sbjct: 214 --------FRYQ-------------IIDTPGLLDRPISERNEIEKQAILA---------- 242
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR---------IVLNKADMVDHQQ 218
+ II + D S+ +E +++ +V+NK D+ D +
Sbjct: 243 LRYLGNLII-----YIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN 297
Query: 219 LMRV 222
+ R+
Sbjct: 298 IKRL 301
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.8 bits (81), Expect = 0.071
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 135 VLKGIS--IVDTPGILSG-----EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 187
V++GI IVDT G+ S E+ ++R E+ D ++ + DA +
Sbjct: 287 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQE-------IEKADIVLFVLDASS-PLD 338
Query: 188 DEFRRSIEALRGHDDKIRIVLNKADMVDHQQ 218
+E R+ +E ++ + +V+NK D+V+
Sbjct: 339 EEDRKILERIKNK--RYLVVINKVDVVEKIN 367
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 34.6 bits (79), Expect = 0.074
Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 49/194 (25%)
Query: 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219
DF +L + ++ + D + S + + G++ + +V NKAD++
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGS--WLPGLHRFVGNNKVL-LVGNKADLIP---- 110
Query: 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNA 279
V + + + + + L S +
Sbjct: 111 -----------------KSVKHDKVKHW--------MRYSAKQLGLKPEDVFLISAAKGQ 145
Query: 280 ALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG----IH 335
+ +L D I+ R K V +VG + GK+TFI +++ I
Sbjct: 146 GIAELADAIEYYRGGK------------DVYVVGCTNVGKSTFINRMIKEFSDETENVIT 193
Query: 336 IGPEP-TTDRFIAV 348
P TT I +
Sbjct: 194 TSHFPGTTLDLIDI 207
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.0 bits (78), Expect = 0.096
Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 58/176 (32%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG 116
T++L G + GK++F+ + + + T + + V + + +
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRANVD---VQSYSFTTKNLYVGHFDHKL----------- 75
Query: 117 KFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER----V 172
N++Q I+DTPG+L DR ++ +E +
Sbjct: 76 -------NKYQ-------------IIDTPGLL-------DRAFENRNTIEMTTITALAHI 108
Query: 173 DRIILLFDAHKLDISDEFRRSIEALRGHDDKIR---------IVLNKADMVDHQQL 219
+ +IL +DIS++ +I+ I+ I NK D + L
Sbjct: 109 NGVIL----FIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 34.1 bits (77), Expect = 0.12
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-----TDRFIAVMYDEREGSVPGNAL 362
T+M+VG+ GK+T I L D + P T + A + E V
Sbjct: 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLT 98
Query: 363 VVD 365
VVD
Sbjct: 99 VVD 101
Score = 30.6 bits (68), Expect = 1.3
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-----TDRFIAVMYDEREGSVPFS 110
T+M+VG+ GK+T I L D + P T + A + E V
Sbjct: 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.0 bits (79), Expect = 0.12
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 135 VLKGIS--IVDTPGILSG----EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 188
V+ GI ++DT GI EK V+R A D ++L DA +
Sbjct: 268 VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA-------ANTADLVLLTIDAAT-GWTT 319
Query: 189 EFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219
+ E ++ + +V+NK D+V+ Q +
Sbjct: 320 GDQEIYEQVKHR--PLILVMNKIDLVEKQLI 348
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 32.9 bits (76), Expect = 0.21
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 171 RVDRIILLFDA----HKLDISDEFRRSIE-ALRGHDDKIRIVLNKADMVD 215
+D +I L DA +++ + + A D RI+L K D+
Sbjct: 122 LLDGVIALVDAVHADEQMNQFTIAQSQVGYA-----D--RILLTKTDVAG 164
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 33.3 bits (75), Expect = 0.22
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE----PTTDRFIAVMYDEREGSVPGNALV 363
T+M+VG+ GK+T I L D T + +EG V +
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Query: 364 VD 365
VD
Sbjct: 93 VD 94
Score = 30.2 bits (67), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDF 81
T+M+VG+ GK+T I L D
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDL 56
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 32.3 bits (74), Expect = 0.24
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 137 KGISIVDTPGI---LSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDA-HKLDISDEFR 191
K I+D PG + K+ +R D +E A+ +D +L+ D +I +
Sbjct: 44 KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWE 103
Query: 192 RS---------IEALRGHDDKIRIVLNKADMVDHQQ 218
+ + LR D + +NK D + + Q
Sbjct: 104 KRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ 139
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.8 bits (76), Expect = 0.27
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 142 VDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD 201
VDTPG+ + + V E A+ V+ ++ + D + E AL+
Sbjct: 60 VDTPGLHK-PMDALGE-FMDQEVYEALAD-VNAVVWVVDLRH-PPTPEDELVARALKPLV 115
Query: 202 DKIRIVL--NKADMV-DHQQLMRVYGALM 227
K+ I+L NK D ++ M+ Y L+
Sbjct: 116 GKVPILLVGNKLDAAKYPEEAMKAYHELL 144
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (69), Expect = 0.27
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 455 EGKKKELIKKLDEIYKQIQRE-------------YQISPVFGKKKELIKKLDEIYKQIQR 501
E ++K L ++L+E +++Q+E Y+ +P G L ++ E I+R
Sbjct: 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 73
Score = 29.1 bits (65), Expect = 1.0
Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 484 KKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQEL-LQHHDFTKFQTLRPRLIEVADKM 542
++K L ++L+E +++Q+E ++KM+++ + +L P++ E +
Sbjct: 16 QRKRLQQQLEERSRELQKEVDQREA----LKKMKDVYEKTPQMGDPASLEPQIAETLSNI 71
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.1 bits (73), Expect = 0.38
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 22/124 (17%)
Query: 116 GK--FGNSFL--NRFQCSLVNSPV---------LKG--ISIVDTPGILSGEKQRVDRGYD 160
GK NS + + S + + G I+I+DTPG++ E V+
Sbjct: 48 GKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV--EAGYVNHQAL 105
Query: 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHD--DKIRIVLNKADMVD 215
+D ++ + + + ++ + A+ G + K +VL A
Sbjct: 106 ELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165
Query: 216 HQQL 219
+L
Sbjct: 166 PDEL 169
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 32.0 bits (72), Expect = 0.42
Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 38/187 (20%)
Query: 39 HFHDFHSPPYEDADFDAKP--TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI 96
H H HS E+ F + ++LVG+ GK+ +L + RF
Sbjct: 2 HHHHHHSSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQR-------------RFF 48
Query: 97 AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVD 156
+ + + + + G+ ++ + +VDTP I S + + D
Sbjct: 49 S--------RLGATSVTRACTTGSRRWDKCH-----------VEVVDTPDIFSSQVSKTD 89
Query: 157 RGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR--RSIEALRGHD--DKIRIVLNKAD 212
G + G + +LL + + + R + + G D + IV + +
Sbjct: 90 PGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149
Query: 213 MVDHQQL 219
+ L
Sbjct: 150 DLAGGSL 156
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 32.1 bits (72), Expect = 0.46
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 57 PTVMLVGQYSTGKTTFIRYLL 77
P V++VG TGKT+ R L
Sbjct: 139 PRVVIVGGSQTGKTSLSRTLC 159
Score = 32.1 bits (72), Expect = 0.46
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 307 PTVMLVGQYSTGKTTFIRYLL 327
P V++VG TGKT+ R L
Sbjct: 139 PRVVIVGGSQTGKTSLSRTLC 159
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 32.3 bits (74), Expect = 0.48
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 25/111 (22%)
Query: 58 TVMLVGQYSTGKTTFIRYLL--------ERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF 109
+ ++G GKTTF R L+ + +P + I YD
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP---QRIFPNYDGTVQQYLE 352
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDT----PGILS-GEKQRV 155
+ + F V K +++ LS GE Q++
Sbjct: 353 NASKDALSTSSWFFEE---------VTKRLNLHRLLESNVNDLSGGELQKL 394
Score = 29.6 bits (67), Expect = 3.4
Identities = 69/384 (17%), Positives = 125/384 (32%), Gaps = 85/384 (22%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFP-----GIHIGPEPTTDRF----IAVMYDEREGSVP 108
+ ++G+ GKTT ++ L P +G + RF I Y + S
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY-NYFKELYSNE 85
Query: 109 FSPLDKFGK--------FG--NSFLNRFQCSLVNSPVLKGISIVDT----PGILS-GEKQ 153
+ K G N L + V + +++ + ILS G Q
Sbjct: 86 LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145
Query: 154 RVDRGYDFTGVLEWFAERVDRIILLFD---AHKLDIS--DEFRRSIEALRG--------H 200
R+ L D + +FD ++ LD+ ++I L H
Sbjct: 146 RLL----VAASL---LREAD--VYIFDQPSSY-LDVRERMNMAKAIRELLKNKYVIVVDH 195
Query: 201 DDKIRIVLNKADMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDV 256
D IVL + D ++ VYG + ARV I +F + +
Sbjct: 196 D---LIVL--DYLTDLIHIIYGESSVYG--------RVSKSYAARVGINNF-LKGYLPAE 241
Query: 257 NRRLFEDEEQDLFKDLQSLPRNA---ALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVG 313
N ++ DE + + K++ L + K +IK+ + ++ + + ++G
Sbjct: 242 NMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILG 301
Query: 314 QYSTGKTTFIRYLL--------ERDFPGIHIGPEPTTDRFIAVMYD----EREGSVPGNA 361
GKTTF R L+ + +P + I YD + + +A
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQILSYKP---QRIFPNYDGTVQQYLENASKDA 358
Query: 362 LVVDPKKQFRPLDKFG-NSFLNRF 384
L + + L
Sbjct: 359 LSTSSWFFEEVTKRLNLHRLLESN 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 31.7 bits (73), Expect = 0.48
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 17 ETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVML-VGQYSTGKTTFI 73
+ + E +K+ L P E+ P + + K V+L VG GKTT I
Sbjct: 62 KDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTI 119
Score = 30.6 bits (70), Expect = 1.1
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 270 KDLQSLPR---NAALRKLNDLIKRARLAKAPYEDADFDAKPTVML-VGQYSTGKTTFI 323
KDL+ + L +L P + + K V+L VG GKTT I
Sbjct: 62 KDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTI 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.50
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 29/80 (36%)
Query: 454 KEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKK----LDEIYKQIQREYQISPGD 509
+E ++++ +++LD K ++E +K L+E + ++ Q+
Sbjct: 91 RE-EQRKRLQELDAASKV------------MEQEWREKAKKDLEEWNQ--RQSEQVE--- 132
Query: 510 FPKVEKM-----QELLQHHD 524
K + + Q D
Sbjct: 133 --KNKINNRIADKAFYQQPD 150
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 32.0 bits (73), Expect = 0.52
Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 11/71 (15%)
Query: 14 EMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFI 73
+ + + L + K P+ E D +LV G
Sbjct: 212 TLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCD----FVLVA---AG-NLDT 263
Query: 74 RYLL---ERDF 81
+ R
Sbjct: 264 VDKMHPALRSR 274
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.2 bits (70), Expect = 0.70
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 35/165 (21%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK 117
++LVG+ TGK+ +L + +G + T + +
Sbjct: 24 RIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLT-KTCSKSQGSWGN------------ 70
Query: 118 FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIIL 177
+ I I+DTP + S + + A ++L
Sbjct: 71 -------------------REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLL 111
Query: 178 LFDAHKLDISDEFR-RSIEALRGHD--DKIRIVLNKADMVDHQQL 219
+ + D+ + ++ + G D ++ + ++ L
Sbjct: 112 VTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSL 156
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.70A {Staphylococcus aureus subsp}
SCOP: c.94.1.1
Length = 295
Score = 31.2 bits (71), Expect = 0.75
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 430 SSTSNSVQAYI-ISALRKDMPSVFGKEGKKKELIKKL------DEIYKQIQREYQ--ISP 480
S S++V+ YI I A+ + K+ E K +Q + + P
Sbjct: 227 KSNSDAVKPYINIVAVNDK--------DLDNKTYAKIVELYHSKEAQKALQEDVKDGEKP 278
Query: 481 VFGKKKELIKKLDEIYK 497
V K E+ + K
Sbjct: 279 VNLSKDEIKAIETSLAK 295
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 31.5 bits (72), Expect = 0.75
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 202 DKIRIVLNKADMVDHQQLMRVY 223
DKI IV NK D+VD +Q Y
Sbjct: 136 DKIIIVQNKIDLVDEKQAEENY 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 31.4 bits (72), Expect = 0.81
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 202 DKIRIVLNKADMVDHQQLMRVY 223
I I NK ++VD ++ + Y
Sbjct: 138 KNIIIAQNKIELVDKEKALENY 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 31.2 bits (70), Expect = 0.97
Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSP-LDKFGK 117
+++G TGK++ I+ + + +I ++ + E + + L + K
Sbjct: 33 TLVLGLRRTGKSSIIKIGIN-ELNLPYI--------YLDLRKFEERNYISYKDFLLELQK 83
Query: 118 FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVD-RII 176
N + R L ++GI I+ + ++ F +LE F + +I
Sbjct: 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRL---SFANLLESFEQASKDNVI 140
Query: 177 LLFD-AHKLD--ISDEFRRSIEALRGHDDKIRIVL 208
++ D A +L ++ + +I+ ++
Sbjct: 141 IVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIM 175
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 31.1 bits (71), Expect = 1.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 202 DKIRIVLNKADMVDHQQLMRVY 223
+ IV NK D+V ++ + Y
Sbjct: 130 KNLIIVQNKVDVVSKEEALSQY 151
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.4 bits (68), Expect = 1.3
Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 50/202 (24%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
V+L+G GK++ + + P + E T++
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSN-------------PSLEHFSTLIDL 48
Query: 119 GNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 178
++++ PG L+ + D F + V ++ +
Sbjct: 49 ---------------------AVMELPGQLNYFEPSYDSERLF--------KSVGALVYV 79
Query: 179 FDAHKLDISD--EFRRSIEALRGHDDKIRI--VLNKADMVDHQQLMRVYGALMWSLGKVL 234
D+ I+ IE + I I +++K D + + +M G+ L
Sbjct: 80 IDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEEL 139
Query: 235 QTPEVARVYIG----SFWDQPL 252
+ V + S +D +
Sbjct: 140 LELGLDGVQVSFYLTSIFDHSI 161
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 30.1 bits (69), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 49 EDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 79
D F+A+P + G GK+T LLER
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFS-LLER 50
Score = 30.1 bits (69), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 299 EDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 329
D F+A+P + G GK+T LLER
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFS-LLER 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.4
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 485 KKELIKKLDEIYKQIQREYQISPGDFP 511
+K+ +KKL K Y + P
Sbjct: 18 EKQALKKLQASLKL----Y--ADDSAP 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 30.5 bits (68), Expect = 1.5
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 463 KKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQH 522
L K++ E + K+ K + + + + D PK++K++E+++
Sbjct: 295 SALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIRE 354
Query: 523 HDFTKFQTLRPRLIEVADKMLAEDIAHLL 551
K + ++ + A+ I + L
Sbjct: 355 QLQRKQNSK--IIVFTNYRETAKKIVNEL 381
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.7 bits (66), Expect = 1.6
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 309 VMLVGQYSTGKTTFIRYLLER-DFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367
++L G S GK+ +R L P + G D I M + + + G D
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFG----VDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 368 KQFRP 372
P
Sbjct: 62 VSIGP 66
Score = 27.4 bits (60), Expect = 8.6
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 59 VMLVGQYSTGKTTFIRYLLER-DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK 117
++L G S GK+ +R L P + G D I M + + + D G
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFG----VDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 118 F 118
Sbjct: 62 V 62
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 30.0 bits (67), Expect = 2.0
Identities = 33/224 (14%), Positives = 59/224 (26%), Gaps = 54/224 (24%)
Query: 39 HFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAV 98
H H HS E+ F + +VG T E++ IG +RF+
Sbjct: 2 HHHHHHSSGRENLYFQGTYNISVVGLSGT----------EKEKGQCGIGKSCLCNRFVRP 51
Query: 99 MYDE-------REGSVPFS----PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGI 147
DE + F D F +G + C +++ +D
Sbjct: 52 SADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTF 111
Query: 148 --------LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL--------------D 185
K+ L +F + F+ ++ D
Sbjct: 112 QPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171
Query: 186 ISDEFRRSIEALRGHDDKIR-----------IVLNKADMVDHQQ 218
+S R+ + + +VL K D +
Sbjct: 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY 215
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.0 bits (68), Expect = 2.2
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 17/123 (13%)
Query: 211 ADMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQ 266
+ D ++ VYG + P+ R I F + D N R E +
Sbjct: 222 DYLSDIIHVVYGEPGVYG--------IFSQPKGTRNGINEFLR-GYLKDENVRFRPYEIK 272
Query: 267 DLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKP--TVMLVGQYSTGKTTFIR 324
+ L L+K E + K + +VG GKTTF++
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKD--YGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK 330
Query: 325 YLL 327
L
Sbjct: 331 MLA 333
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 29.8 bits (66), Expect = 2.8
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 300 DADFDAKPTVMLV-GQYSTGKTTFIRYLLERDFP---GIHIGPEPTT-------DRFIAV 348
D + + G Y GKTT L I + EP + + I
Sbjct: 5 KTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICG 64
Query: 349 MYDEREGSVPGNALVVDPKK 368
+Y + + G+ D ++
Sbjct: 65 IYGTQTRRLNGDVSPEDAQR 84
Score = 29.8 bits (66), Expect = 2.8
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 50 DADFDAKPTVMLV-GQYSTGKTTFIRYLLERDFP---GIHIGPEP 90
D + + G Y GKTT L I + EP
Sbjct: 5 KTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP 49
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.4 bits (65), Expect = 2.9
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 46 PPYEDADFDAKPTVMLV-GQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 104
P + + + + + G + GK+TF+ L + + PEP +A + +
Sbjct: 13 PSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQL-CEDWEVVPEP-----VARWCNVQS 66
Query: 105 GSVPFSPLDKFGKFGNSFLNRF 126
F L K G + L
Sbjct: 67 TQDEFEELTMSQKNGGNVLQMM 88
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.9 bits (64), Expect = 3.4
Identities = 21/201 (10%), Positives = 50/201 (24%), Gaps = 45/201 (22%)
Query: 318 GKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFG 377
GK+TF++ L + +P H+ EP + Q +
Sbjct: 14 GKSTFVKLLTKT-YPEWHVATEPVAT----------------WQNIQAAGNQKACTAQSL 56
Query: 378 NSFLNRF------QCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSS 431
+ L+ + ++ + F ++ L ++FE
Sbjct: 57 GNLLDMMYREPARWSYTFQTFSFLSRLKV-------QLEPFPEKLLQARKPVQIFERSVY 109
Query: 432 TSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKK 491
+ + A + + + + + E+ L
Sbjct: 110 SDRYIFAKNLFENGSLSDIEW----------HIYQDWHSFLLWEFASRITLHGFIYLQAS 159
Query: 492 LDEIYKQIQR-----EYQISP 507
K++ + E I
Sbjct: 160 PQVCLKRLYQRAREEEKGIEL 180
Score = 28.9 bits (64), Expect = 4.1
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 68 GKTTFIRYLLERDFPGIHIGPEPTTD-----RFIAVMYDEREGSVPFSPLDKFGKFGNSF 122
GK+TF++ L + +P H+ EP + LD + +
Sbjct: 14 GKSTFVKLLTKT-YPEWHVATEPVATWQNIQAAGNQKACTAQSLGNL--LDMMYREPARW 70
Query: 123 LNRFQCSLVNS 133
FQ S
Sbjct: 71 SYTFQTFSFLS 81
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T
3j0l_T
Length = 200
Score = 28.8 bits (65), Expect = 3.5
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 330 DFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLV 389
++ + I +P +IA + + VP A + Q + K + R +L+
Sbjct: 18 NYDEVKIQ-DPCFQNYIACTTTKSQVFVPHTA----GRYQVKKFRKTQCPIVERLIGTLM 72
Query: 390 NSPVLKGK 397
GK
Sbjct: 73 FHGRNAGK 80
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.6 bits (65), Expect = 4.1
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 48 YEDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 79
++ + K + +VG+ +GK+T + L++R
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQR 57
Score = 28.6 bits (65), Expect = 4.1
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 298 YEDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 329
++ + K + +VG+ +GK+T + L++R
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQR 57
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.1 bits (66), Expect = 4.8
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 23/137 (16%)
Query: 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS----DEFRRSIEA 196
+ D PGI+ G + G +F + R R++L + LD + +
Sbjct: 209 LADIPGIIEGASEGKGLGLEFLRHIA----RT-RVLL----YVLDAADEPLKTLETLRKE 259
Query: 197 LRGHDDKIR-----IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251
+ +D + + LNK D+++ + + + AL VL + +
Sbjct: 260 VGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGL-----PA 314
Query: 252 LVHDVNRRLFEDEEQDL 268
L ++ + ++
Sbjct: 315 LKEALHALVRSTPPPEM 331
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 28.5 bits (63), Expect = 5.3
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--PEP 90
+ L G Y GK+T R + G PEP
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEP 43
Score = 28.5 bits (63), Expect = 5.3
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--PEP 340
+ L G Y GK+T R + G PEP
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEP 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 28.7 bits (65), Expect = 6.0
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
Query: 415 QPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQR 474
+ DV + + + + + I L++ + + F + E + K E++++ R
Sbjct: 669 NSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLR 728
Query: 475 EYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQ 521
E ++ + E+Y+ ++E + EK +LQ
Sbjct: 729 ER-----------ILAQSIEVYQ--RKEEVVGAEMMRHFEKGV-MLQ 761
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.8 bits (64), Expect = 6.1
Identities = 26/184 (14%), Positives = 44/184 (23%), Gaps = 22/184 (11%)
Query: 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219
+ + D L ++L + + + + I L ++D Q
Sbjct: 329 GEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAW 388
Query: 220 MRVYGALMWSLGKVLQTPE--VARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPR 277
+ L + + N EDE +DL SL
Sbjct: 389 FTHI---TPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAY 445
Query: 278 NAALRKLNDLIKRARLAKAPYEDADFDAKPT--VMLVGQYSTGKTTFIRYLLERDFPGIH 335
A K K + G GK+T +R + G
Sbjct: 446 GA---------------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP 490
Query: 336 IGPE 339
E
Sbjct: 491 TQEE 494
Score = 28.1 bits (62), Expect = 8.7
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPE 89
+ G GK+T +R + G E
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVDGFPTQEE 494
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 28.7 bits (63), Expect = 6.1
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 290 RARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG-IHIGPEP 340
R + A + V + G + GKTT + L+ I PEP
Sbjct: 33 RQQEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 84
Score = 27.9 bits (61), Expect = 9.7
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 45 SPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG-IHIGPEP 90
+ + V + G + GKTT + L+ I PEP
Sbjct: 38 TEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 84
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 28.3 bits (64), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 49 EDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 79
+ +F T LVG +GK+T + LL R
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAK-LLYR 68
Score = 28.3 bits (64), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 299 EDADFDAKP--TVMLVGQYSTGKTTFIRYLLER 329
+ +F T LVG +GK+T + LL R
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAK-LLYR 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.4 bits (64), Expect = 6.8
Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 18 TVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKP--TVMLVGQYSTGKTTFIRY 75
+ ++V + +E D+ S E + + + +VG GKTTF++
Sbjct: 342 RFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 76 L--LERDFPGIHIGPEPTT---DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130
L +E G + + T ++I Y+ + ++ +
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYEL----------LSKIDSSKLNSNF 450
Query: 131 VNSPVLKGISIVDT----PGILS-GEKQRV 155
+ +LK + I+D LS GE QRV
Sbjct: 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 28.4 bits (63), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 85 HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG 116
IG +PT F +V+ E G P SPL G
Sbjct: 88 KIGADPTGLPFNSVIALELHGGKPLSPLVNAG 119
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 28.4 bits (64), Expect = 7.4
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 8/46 (17%)
Query: 164 VLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209
L VD + IS R ++ G + +
Sbjct: 133 SLRKIGTEVDVLTY--------ISQYTLRRFKSAFGSHPTFEHLPS 170
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical
bundle, vesicular transport, tethering, protein
transport; NMR {Saccharomyces cerevisiae}
Length = 204
Score = 27.8 bits (61), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 460 ELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEI 495
E +KKLDEIY ++ Q++ K L K L E+
Sbjct: 83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEM 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 27.7 bits (62), Expect = 8.1
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 308 TVMLVGQYSTGKTT----FIRYLLERDFPGIHIGPEPTTDRFIAVMYD--------EREG 355
+ L G+ TGKT FI L P I++ E + D I +
Sbjct: 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKK 84
Query: 356 SVPGNALVVDPKKQFRPLDKFGNSFLNR 383
+ +AL+ + + Q+ ++ +N+
Sbjct: 85 LIIIDALMKEKEDQWSLVNLTPEELVNK 112
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 28.2 bits (62), Expect = 8.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG-PEP 90
V + G + GKTT + L+ + PEP
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39
Score = 28.2 bits (62), Expect = 8.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG-PEP 340
V + G + GKTT + L+ + PEP
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 28.1 bits (63), Expect = 8.4
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 206 IVLNKADMVDHQQLMRV 222
+V+ K+D +++ R
Sbjct: 130 VVITKSDNAGTEEIKRT 146
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 27.6 bits (62), Expect = 9.1
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 155 VDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-----DEFRRSIEALRGHDDKIRIVLN 209
VD G V W E +D + ++ + + + + +I I+LN
Sbjct: 124 VDFGASIDHVGVWVLEHLDELCIVTT---PSLQSLRRAGQLLKLCKEFEKPISRIEIILN 180
Query: 210 KAD 212
+AD
Sbjct: 181 RAD 183
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 9.7
Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 73/319 (22%)
Query: 58 TVMLVGQYSTGKTTFIRY---LLERDFPGIHIGPEPTT-----------DRFIAVMYDER 103
+ LVG GK+T ++ + + PE + F ++ D+
Sbjct: 105 VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDI 164
Query: 104 EGSVPFSPLDKFGKFGNSFLN--RFQCSLVNSPVLKGIS----IVDTPGI---------- 147
++ + + L+ + K + +
Sbjct: 165 -KAIIKPQYVDN--IPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEK 221
Query: 148 LS-GEKQRVDRGYDFTGVLEWFAERVDRIILLFD----AHKLDIS--DEFRRSIEALRGH 200
LS GE QR + D + +FD LD+ + I +L
Sbjct: 222 LSGGELQRFA----IGMSC---VQEAD--VYMFDEPSSY--LDVKQRLNAAQIIRSLLAP 270
Query: 201 DDKIRI------VLNKADMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQ 250
+ VL + D ++ VYG V+ P R I F D
Sbjct: 271 TKYVICVEHDLSVL--DYLSDFVCIIYGVPSVYG--------VVTLPASVREGINIFLDG 320
Query: 251 PLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKP--T 308
+ + R E + + + L ++A R + + + +
Sbjct: 321 HIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEI 380
Query: 309 VMLVGQYSTGKTTFIRYLL 327
++++G+ TGKTT I+ L
Sbjct: 381 LVMMGENGTGKTTLIKLLA 399
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.412
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,903,037
Number of extensions: 570816
Number of successful extensions: 2149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 174
Length of query: 551
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 453
Effective length of database: 3,965,535
Effective search space: 1796387355
Effective search space used: 1796387355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)