RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11743
(551 letters)
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 85.6 bits (211), Expect = 6e-19
Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 44/271 (16%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY-----------DEREG 105
P +++VG S+GK++ + ++ RDF G T R + + + G
Sbjct: 25 PQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVTRRPLILQLTHLPIADDGSQTQEWG 82
Query: 106 SVPFSPLDKFGKF-----------------GNSFLNRFQCSLVNSPVLKGISIVDTPGIL 148
P D F F + + SP + +++VD PGI
Sbjct: 83 EFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGIT 142
Query: 149 SGEKQR--VDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDDKIR 205
D ++ + ++ + II+ D+ + + + + + +
Sbjct: 143 KVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI 202
Query: 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEE 265
V+ K D++D A+ G+V+ I + + R + E
Sbjct: 203 GVITKLDLMDKGT-----DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257
Query: 266 Q-----DLFKDLQSLPRNAALRK-LNDLIKR 290
++K + + A L K LN L+
Sbjct: 258 LYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288
Score = 44.4 bits (104), Expect = 2e-05
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 283 KLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 342
+L +I + + D P +++VG S+GK++ + ++ RDF G T
Sbjct: 2 QLIPVINKLQDVFNTLGSDPLDL-PQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVT 58
Query: 343 DRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKF 376
R + + + G+ + +P D F
Sbjct: 59 RRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMF 92
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 83.8 bits (206), Expect = 2e-18
Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 29/285 (10%)
Query: 30 KLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE 89
L+PL D S ++AD D P + +VG S GK++ + + RDF G
Sbjct: 3 DLIPLVN--RLQDAFSAIGQNADLD-LPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSG 57
Query: 90 PTTDRFIAVMY--------------------DEREGSVPFSPLDKFGKFGNSFLNRFQCS 129
T R + + E + D+
Sbjct: 58 IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINL 117
Query: 130 LVNSPVLKGISIVDTPGILS---GEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI 186
V SP + +++VD PG+ G++ ++++ + I+ + A+
Sbjct: 118 RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 177
Query: 187 SDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246
+ + + + + + V+ K D++D R + V R
Sbjct: 178 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 237
Query: 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRK-LNDLIKR 290
+ + + ++ L L+K LN +
Sbjct: 238 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 282
Score = 46.0 bits (108), Expect = 5e-06
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 3/109 (2%)
Query: 281 LRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-- 338
+ L L+ R + A + P + +VG S GK++ + + RDF G
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 339 -EPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQC 386
P + + + E D ++ ++ + +
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 109
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 39.2 bits (90), Expect = 5e-04
Identities = 26/229 (11%), Positives = 74/229 (32%), Gaps = 38/229 (16%)
Query: 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365
+P++++ G ++GKT+ + L PT + + +GS +VD
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSV-------RPTVVSQEPLSAADYDGS---GVTLVD 52
Query: 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRL 425
+ K + R + ++ V + L
Sbjct: 53 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---------------LTTTAEFL 97
Query: 426 FEDRSSTSNSVQAYI---ISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVF 482
+ S T +S + I I+ + ++ + K L ++ ++ ++ ++
Sbjct: 98 VDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERK 157
Query: 483 GKKKELIKKLDEI--------YKQIQREYQISPGDFP--KVEKMQELLQ 521
+++ + ++ + ++ G K+ + +E +
Sbjct: 158 INEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWID 206
Score = 33.8 bits (76), Expect = 0.034
Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 8/156 (5%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKF 115
+P++++ G ++GKT+ + L + D V
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT------VVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 116 GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRI 175
K + + V I +VD+ + D + E E I
Sbjct: 57 VKLRYKLSDYLKTRAKF--VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 114
Query: 176 ILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211
++ + +L + + +AL K+ K+
Sbjct: 115 LIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 150
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 35.7 bits (81), Expect = 0.008
Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 25/195 (12%)
Query: 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366
V LVG S GK+T + + P I T + ++ D
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVE-------------TDD 47
Query: 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLF 426
+ F D G + + G Q + R +
Sbjct: 48 GRSFVMADLPG---------LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY 98
Query: 427 EDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKK 486
+D + + + Y + + V K + + L+ +++ +Y + P+ +
Sbjct: 99 DDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-AENLEAFKEKLTDDYPVFPISAVTR 157
Query: 487 ELIKKL-DEIYKQIQ 500
E +++L E+ Q++
Sbjct: 158 EGLRELLFEVANQLE 172
Score = 29.9 bits (66), Expect = 0.49
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG 116
V LVG S GK+T + + I T + E + F D G
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNLGMVETDDGRSFVMADLPG 58
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 33.4 bits (76), Expect = 0.042
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 16/138 (11%)
Query: 139 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR 198
S VD PG D+ + A ++D IL+ A + R I R
Sbjct: 69 YSHVDCPG-----------HADYIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLAR 116
Query: 199 GHD-DKIRIVLNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFW--DQPLVH 254
I + +NK DMVD +L+ V + L + + V GS + +
Sbjct: 117 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 176
Query: 255 DVNRRLFEDEEQDLFKDL 272
+ R E+E D +L
Sbjct: 177 NPKTRRGENEWVDKIWEL 194
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 32.6 bits (73), Expect = 0.061
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF---SPLDKF 115
+++G TGK+ + +E+ F + + + + ++F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 116 GKFGNSFLNRFQCSLV 131
S+ +L+
Sbjct: 68 RSVTRSYYRGAAGALL 83
Score = 31.8 bits (71), Expect = 0.13
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV 357
+++G TGK+ + +E+ F + + +
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 56
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 32.2 bits (72), Expect = 0.080
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 104
+FD ++++G S GKT+F+ + F + + + +++
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR 53
Score = 32.2 bits (72), Expect = 0.080
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 354
+FD ++++G S GKT+F+ + F + + + +++
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR 53
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 32.1 bits (72), Expect = 0.091
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 104
D+D ++L+G GKT +R + FP V + +
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 53
Score = 32.1 bits (72), Expect = 0.091
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 354
D+D ++L+G GKT +R + FP V + +
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 53
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 32.0 bits (71), Expect = 0.097
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 100
T++ G+ + GK+T I L + + G P R I +
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIE 41
Score = 32.0 bits (71), Expect = 0.097
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 350
T++ G+ + GK+T I L + + G P R I +
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIE 41
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 31.4 bits (70), Expect = 0.15
Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPL---DKF 115
V+L+G GK+ + +F ++ D + +++
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 116 GKFGNSFLNRFQCSLV 131
+ +++ +L+
Sbjct: 67 RRITSAYYRGAVGALL 82
Score = 31.0 bits (69), Expect = 0.24
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER 353
V+L+G GK+ + +F ++ D +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 51
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 31.4 bits (70), Expect = 0.17
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER 103
D+D ++ +G GKTTF+ + F I R V+Y+ +
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 52
Score = 31.4 bits (70), Expect = 0.17
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER 353
D+D ++ +G GKTTF+ + F I R V+Y+ +
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 52
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.4 bits (70), Expect = 0.18
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 52 DFDAKPT--VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF 109
D D T ++++G+ GK++ + + F + + D + +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Score = 31.4 bits (70), Expect = 0.19
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 302 DFDAKPT--VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 351
D D T ++++G+ GK++ + + F + + D
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD 52
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.1 bits (69), Expect = 0.20
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
V + G GK++ + ++ F +I PT + + + D G
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYI---PTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 119 GNSFLNRFQC 128
+ R
Sbjct: 62 QFPAMQRLSI 71
Score = 29.6 bits (65), Expect = 0.73
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER 353
V + G GK++ + ++ F +I T R +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI 49
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 31.2 bits (70), Expect = 0.23
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 172 VDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
VD++IL+ + S + + ++ + +V+NK D+ D L +V
Sbjct: 11 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70
Query: 231 GKV 233
G
Sbjct: 71 GLY 73
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.8 bits (68), Expect = 0.23
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG 105
V+++G GKT+ + + + F + T +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYK---ATIGADFLTKEVMVDD 48
Score = 30.8 bits (68), Expect = 0.23
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG 355
V+++G GKT+ + + + F + T +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYK---ATIGADFLTKEVMVDD 48
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 30.7 bits (68), Expect = 0.27
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 3/109 (2%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV---PFSPLDKF 115
++ +G+ S GKT+ I + F + + ++R + + ++F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 116 GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGV 164
S++ ++V + S T + + V
Sbjct: 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 111
Score = 29.9 bits (66), Expect = 0.49
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG 355
++ +G+ S GKT+ I + F + + T E
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTY---QATIGIDFLSKTMYLED 46
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.6 bits (68), Expect = 0.31
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 51 ADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++D ++L+G GK+ + + + +I
Sbjct: 1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI 36
Score = 30.6 bits (68), Expect = 0.31
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 301 ADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++D ++L+G GK+ + + + +I
Sbjct: 1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI 36
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
+++VG + GKTT + L + T + ++ F+ D G+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 119 GNSFLNRFQC 128
L R
Sbjct: 56 KIRPLWRHYF 65
Score = 29.2 bits (64), Expect = 0.78
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPG 359
+++VG + GKTT + L + + V G
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 53
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.8 bits (68), Expect = 0.36
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 100
V+ VG +GKT LL + ++ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNN 44
Score = 30.8 bits (68), Expect = 0.36
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 350
V+ VG +GKT LL + ++ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNN 44
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.0 bits (66), Expect = 0.45
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368
++VG + GKT + FP ++ PT AV ++
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68
Query: 369 QFRPLDKFGNSFLNRFQC 386
+ L + F
Sbjct: 69 DYDRLRPLSYPMTDVFLI 86
Score = 28.4 bits (62), Expect = 1.7
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF 109
++VG + GKT + FP ++ PT AV
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTVGGKQYLL 59
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.3 bits (67), Expect = 0.46
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 24/182 (13%)
Query: 59 VMLVGQYSTGKTTFIRYLLE-----RDFPGIHIGP-------EPTTDRFIAVMYDE--RE 104
V+ VG +GKTT +++ EP+ D V +E RE
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 105 GSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGV 164
G P + + N + ++ ++DTPG + + G
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH-EFGVRLMEN 121
Query: 165 LEWFAERVDRIILLFDAHKLD----ISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220
L ++ + D L ++ LNK D++ ++
Sbjct: 122 L-----PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 176
Query: 221 RV 222
R
Sbjct: 177 RH 178
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.8 bits (66), Expect = 0.46
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 104
+++G GK+ + E+ F + ++
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 52
Score = 29.8 bits (66), Expect = 0.46
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 354
+++G GK+ + E+ F + ++
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 52
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.1 bits (67), Expect = 0.48
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 104
++L+G GKT + E F I + + D +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR 54
Score = 30.1 bits (67), Expect = 0.48
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE 354
++L+G GKT + E F I + + D +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR 54
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 29.3 bits (66), Expect = 0.48
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 452 FGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQR 501
+ K K++ K+D + ++++ I + E+ L + I
Sbjct: 61 YEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISN 110
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 29.7 bits (65), Expect = 0.52
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERD 80
TV++VG+ + GK+T L+++
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKK 24
Score = 29.7 bits (65), Expect = 0.52
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERD 330
TV++VG+ + GK+T L+++
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKK 24
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.7 bits (65), Expect = 0.56
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
++ +G + GKTT + L +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQP 30
Score = 29.7 bits (65), Expect = 0.56
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++ +G + GKTT + L +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQP 30
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 30.3 bits (67), Expect = 0.57
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEP--TTDRFIAVMYDEREGSVPFSPLDKFGKF 118
+VG+ + GK+TF D + I P T + + V Y ++ P + G
Sbjct: 5 VVGKPNVGKSTFFSAATLVD---VEIANYPFTTIEANVGVTY-----AITDHPCKELGCS 56
Query: 119 GNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFT 162
N ++ L P + +VD G++ G + G F
Sbjct: 57 PNPQNYEYRNGLALIP----VKMVDVAGLVPGAHEGRGLGNKFL 96
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.9 bits (66), Expect = 0.60
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF 109
++L+G +GK+T ++ + G I T + + + G
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSE 55
Score = 29.9 bits (66), Expect = 0.63
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++L+G +GK+T ++ + G I
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGI 32
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.7 bits (65), Expect = 0.65
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++VG + GK++ I+ + F +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYK 32
Score = 29.7 bits (65), Expect = 0.65
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++VG + GK++ I+ + F +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYK 32
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.6 bits (65), Expect = 0.68
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 101
++VG + GKT + FPG +I ++
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG 50
Score = 29.6 bits (65), Expect = 0.68
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 351
++VG + GKT + FPG +I ++
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG 50
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 0.69
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
++++G + GKT FP R AV D + +F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 119 GNSFLNRFQCS 129
S + + +
Sbjct: 65 RKSMVQHYYRN 75
Score = 28.1 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++++G + GKT FP
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTE 32
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 29.6 bits (65), Expect = 0.70
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++VG + GKT + + FP +++
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYV 32
Score = 29.6 bits (65), Expect = 0.70
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++VG + GKT + + FP +++
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYV 32
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.1 bits (64), Expect = 0.79
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
V+++G GK+ + F + +PT + F + LD G
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKY---DPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 119 GNSFLNR 125
+ +
Sbjct: 63 QFASMRD 69
Score = 27.6 bits (60), Expect = 2.5
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
V+++G GK+ + F +
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYD 33
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 29.8 bits (66), Expect = 0.87
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 23/229 (10%)
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGN 120
+VG + GK+TF R + + P T D A + VP D +
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVA------VPDERFDWLCEAYK 68
Query: 121 SFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFD 180
+++ D G+ G V G F VD I +
Sbjct: 69 PKSRVPAF----------LTVFDIAGLTKGASTGVGLGNAFLS----HVRAVDAIYQVVR 114
Query: 181 AHKLDISDEFRRSIEALRGH---DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTP 237
A ++ +R D++ I + + L ++ +L +
Sbjct: 115 AFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKE 174
Query: 238 EVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLND 286
E A + + + + + + E ++ L L + +N
Sbjct: 175 EQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNM 223
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 0.90
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE 102
V+++G GKT+ + + + + V D
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG 48
Score = 29.3 bits (64), Expect = 0.90
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE 352
V+++G GKT+ + + + + V D
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG 48
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 8/165 (4%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368
++++G + GKTT ++ D I + V G K
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQ-------K 57
Query: 369 QFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFED 428
R + + + ++ + + Q + + L+ N++
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 429 RSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKK-LDEIYKQI 472
S + +A + ++R + G E + +D + I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
Score = 28.1 bits (61), Expect = 1.8
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
++++G + GKTT ++ D I
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISP 32
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.4 bits (65), Expect = 0.92
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 272 LQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDF 331
+ + A KL +L+ + T++++G+ GK++ + ++
Sbjct: 7 INTFA-PATQTKLLELLGNLKQEDVN--------SLTILVMGKGGVGKSSTVNSIIGERV 57
Query: 332 PGIHIGPEPTTDR 344
I
Sbjct: 58 VSISPFQSEGPRP 70
Score = 27.1 bits (59), Expect = 4.9
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94
T++++G+ GK++ + ++ I
Sbjct: 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP 70
>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
{Shewanella loihica [TaxId: 359303]}
Length = 90
Score = 27.8 bits (62), Expect = 0.93
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 173 DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212
++ + LF+ + DI ++ + IE D + I + + D
Sbjct: 52 EQALSLFEQFRFDIEEQAEKLIEQ-EAFDVQGHIQVERVD 90
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.1 bits (64), Expect = 0.99
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
V++VG GK+ + +F +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYE 34
Score = 29.1 bits (64), Expect = 0.99
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
V++VG GK+ + +F +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYE 34
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.8 bits (63), Expect = 1.0
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG 116
V LVG + GK++ + + I P P T + E F+ D G
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Score = 28.5 bits (62), Expect = 1.4
Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 13/183 (7%)
Query: 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366
V LVG + GK++ + + P I P T + V+ E + D
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERF----TLADI 56
Query: 367 KKQFRPLD---KFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNR 423
G FL + V VL + + P +
Sbjct: 57 PGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPS 116
Query: 424 RLFEDRS-STSNSVQAYIISALRKDMPSVFGKEGKKK----ELIKKLDEIYKQIQREYQI 478
+ ++ + AL ++ +V L + L + +
Sbjct: 117 LVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMP 176
Query: 479 SPV 481
PV
Sbjct: 177 KPV 179
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.9 bits (63), Expect = 1.1
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 100
+++VG GKT + + FP ++ PT +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYV---PTVFENYTASF 43
Score = 28.9 bits (63), Expect = 1.1
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 350
+++VG GKT + + FP ++ PT +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYV---PTVFENYTASF 43
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 29.2 bits (64), Expect = 1.1
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368
++VG + GKT + FP ++ PT AV ++
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYV---PTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 369 QFRPLDKFGNSFLNRFQC 386
+ L + F
Sbjct: 63 DYDRLRPLSYPQTDVFLV 80
Score = 28.8 bits (63), Expect = 1.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
++VG + GKT + FP ++
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYV 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.9 bits (63), Expect = 1.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIH 85
++++G GKTT + L +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTI 34
Score = 28.9 bits (63), Expect = 1.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIH 335
++++G GKTT + L +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTI 34
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+ LVG +GKTTF+ + F I
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMI 32
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+ LVG +GKTTF+ + F I
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMI 32
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 1.2
Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 8/135 (5%)
Query: 54 DAKPTV-MLVGQYSTGKTTFI----RYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP 108
+ K V ++VG GKTT I RY + + T R G
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD--TFRAAGGTQLSEWGKRL 60
Query: 109 FSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLE-W 167
P+ + + + + + VDT G L + ++ +
Sbjct: 61 SIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKA 120
Query: 168 FAERVDRIILLFDAH 182
E + L+ DA
Sbjct: 121 DPEEPKEVWLVLDAV 135
Score = 27.8 bits (61), Expect = 3.0
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 304 DAKPTV-MLVGQYSTGKTTFI----RYLLERDFPGIHIGPEPTTD 343
+ K V ++VG GKTT I RY + +
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 47
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.8 bits (63), Expect = 1.2
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+ + G+ GK+ + L + F +
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYD 32
Score = 28.8 bits (63), Expect = 1.2
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+ + G+ GK+ + L + F +
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYD 32
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPG---IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKF 115
++L+G+ + GK++ + + DF IG T R + + + ++F
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 116 GKFGNSFLNRFQCSLV 131
+ Q +LV
Sbjct: 66 ASLAPMYYRNAQAALV 81
Score = 28.1 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++L+G+ + GK++ + + DF
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKE 33
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.5 bits (62), Expect = 1.3
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE 102
+++VG GK+ ++ F + + I +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI 52
Score = 28.5 bits (62), Expect = 1.3
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE 352
+++VG GK+ ++ F + + I +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI 52
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.5 bits (62), Expect = 1.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+ ++G S GK++ +E F +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYD 34
Score = 28.5 bits (62), Expect = 1.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+ ++G S GK++ +E F +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYD 34
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
++LVG TGKTTF++ L +F ++
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYV 33
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++LVG TGKTTF++ L +F ++
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYV 33
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.3 bits (62), Expect = 1.5
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++G GK+ + ++ F +H
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHD 33
Score = 28.3 bits (62), Expect = 1.5
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++G GK+ + ++ F +H
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHD 33
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.2 bits (62), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
++L+G GK+ + +E F I
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFI 32
Score = 28.2 bits (62), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
++L+G GK+ + +E F I
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFI 32
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.0 bits (64), Expect = 1.7
Identities = 36/265 (13%), Positives = 79/265 (29%), Gaps = 30/265 (11%)
Query: 265 EQDLFKDLQSLPRNAALRKLNDLIKRA--RLAKAPYEDADFDAKPTVMLVGQYSTGKTTF 322
Q++ ++ R ++ N I A + + V + G+ +GK++F
Sbjct: 22 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSV---------LNVAVTGETGSGKSSF 72
Query: 323 IRYLLER---DFPGIHIGPEPTTDRFIAVMYDEREGSV----PGNALVVDPKKQFRPLDK 375
I L + G T + V PG P + K
Sbjct: 73 INTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132
Query: 376 FGNS--FLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRR-LFEDRSST 432
F F+ + + K + + ++ + D + ++ + D+
Sbjct: 133 FYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 192
Query: 433 SNSVQAYIISALRK---DMPSVFGKEGKK------KELIKKLDEIYKQIQREYQISPVFG 483
++ ++ R+ P +F K L+ KL +R + +
Sbjct: 193 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPN 252
Query: 484 KKKELIKKLDEIYKQIQREYQISPG 508
+I+K + KQ +
Sbjct: 253 ITDSVIEKKRQFLKQRIWLEGFAAD 277
Score = 27.4 bits (60), Expect = 4.5
Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 45/159 (28%)
Query: 59 VMLVGQYSTGKTTFIRYLLER---DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKF 115
V + G+ +GK++FI L + G T +
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH--------------- 103
Query: 116 GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRI 175
P + + D PGI S LE
Sbjct: 104 ------------------PNIPNVVFWDLPGIGSTNFPPDTY-------LEKMKFYEYDF 138
Query: 176 ILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214
++ A + +D +A+ + V K D
Sbjct: 139 FIIISATRFKKNDID--IAKAISMMKKEFYFVRTKVDSD 175
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.4 bits (62), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
V+L+G+ GKT+ + E F HI
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHI 33
Score = 28.4 bits (62), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
V+L+G+ GKT+ + E F HI
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHI 33
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++VG GK+ L++ F +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYD 33
Score = 28.0 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++VG GK+ L++ F +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYD 33
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 28.3 bits (62), Expect = 1.8
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
+D VMLVG GKT + + F F + D V
Sbjct: 2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDVDGVKVKLQM 60
Query: 112 LDKFG 116
D G
Sbjct: 61 WDTAG 65
Score = 27.9 bits (61), Expect = 2.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFP 332
+D VMLVG GKT + + F
Sbjct: 2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFL 32
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 2.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 54 DAKPTV-MLVGQYSTGKTTFI 73
D P V MLVG TGK T
Sbjct: 9 DKIPYVIMLVGVQGTGKATTA 29
Score = 28.2 bits (62), Expect = 2.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 304 DAKPTV-MLVGQYSTGKTTFI 323
D P V MLVG TGK T
Sbjct: 9 DKIPYVIMLVGVQGTGKATTA 29
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.2 bits (61), Expect = 2.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 101
V +VG+ + GK+T + LL I P+ T R ++ +
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE 50
Score = 28.2 bits (61), Expect = 2.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 351
V +VG+ + GK+T + LL I P+ T R ++ +
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE 50
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.0 bits (61), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIH 85
V L+G GK++ + +E F
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNI 33
Score = 28.0 bits (61), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIH 335
V L+G GK++ + +E F
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNI 33
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.1 bits (61), Expect = 2.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 95
++ +G + GKTT + L + PT++
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 52
Score = 28.1 bits (61), Expect = 2.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 345
++ +G + GKTT + L + PT++
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 52
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 28.1 bits (62), Expect = 2.4
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 139 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-------R 191
++++D PG DF + + D IL+ +
Sbjct: 86 VTVIDAPG-----------HRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE 134
Query: 192 RSIEALRGHDDKIRIVLNKADMVDHQQ 218
++ A ++ + +NK D V +
Sbjct: 135 HALLAFTLGVRQLIVAVNKMDSVKWDE 161
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 2.5
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFP 82
++L+G+ + GK++ + ++ F
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFH 32
Score = 27.7 bits (60), Expect = 2.5
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFP 332
++L+G+ + GK++ + ++ F
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFH 32
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.8 bits (60), Expect = 2.6
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDF 81
V++ G+ + GK++ + L R+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREA 26
Score = 27.8 bits (60), Expect = 2.6
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDF 331
V++ G+ + GK++ + L R+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREA 26
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 28.3 bits (63), Expect = 2.7
Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 175 IILLFDAHKLDISDEFRRSIEALRGHDDKIRIV----LNKADMVDHQQL--MRVYGALMW 228
+ L D ++EF+ ++ + K I+ + + ++ + +R A +
Sbjct: 53 WVFLNDE---PFTEEFKEAVTKAVSSEVKFGILPKEHWSYPEWINQTKAAEIRADAATKY 109
Query: 229 SLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQ 273
G + R G FW L+ + + + + L+ D+
Sbjct: 110 IYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDIN 154
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.6 bits (60), Expect = 2.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGP 88
V+L+G GK++ + + F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHT 38
Score = 27.6 bits (60), Expect = 2.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGP 338
V+L+G GK++ + + F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHT 38
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.7 bits (60), Expect = 3.0
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHI 86
+++VG GK+ ++ F +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYD 35
Score = 27.7 bits (60), Expect = 3.0
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHI 336
+++VG GK+ ++ F +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYD 35
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.6 bits (60), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLE 78
+L G GKTT +R++L
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILN 25
Score = 27.6 bits (60), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 307 PTVMLVGQYSTGKTTFIRYLLE 328
+L G GKTT +R++L
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILN 25
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.4 bits (59), Expect = 3.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDF 81
V+L+G GK+ R +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVED 26
Score = 27.4 bits (59), Expect = 3.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDF 331
V+L+G GK+ R +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVED 26
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 3.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFP 82
D V G+ + GK++ + L +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSL 42
Score = 27.4 bits (59), Expect = 3.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFP 332
D V G+ + GK++ + L +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSL 42
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 3.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIH 85
+++VG GK+ ++ F +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDY 33
Score = 27.3 bits (59), Expect = 3.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIH 335
+++VG GK+ ++ F +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDY 33
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 3.6
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92
+ T++L+G + G+ L+ + TT
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 39
Score = 27.1 bits (59), Expect = 3.6
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 342
+ T++L+G + G+ L+ + TT
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 39
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 3.8
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
++++G GK+ ++ F + +PT + + LD G
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 119 GNSFLNRFQCSLVNSPVL 136
+ + L
Sbjct: 63 QFTAMRDLYMKNGQGFAL 80
Score = 27.3 bits (59), Expect = 3.9
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368
++++G GK+ ++ F + +PT + + L +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 369 QFRPLDKFGNSFLN--RFQCSLVNSPVLKG---------KVLQTPEVARVYIGSFWDQPL 417
QF + S+ +V T +V + +G+ D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 418 VHDVNRRLFEDRSSTSNSVQAYIISAL 444
V + ++ + + SA
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAK 149
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.4 bits (59), Expect = 3.8
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 288 IKRARLAKAPYEDADF--DAKPTVMLVGQYSTGKTTFIRYL 326
+ ++ + + + + P + L G+ + GK++FI L
Sbjct: 3 VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSL 43
Score = 26.3 bits (56), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYL 76
P + L G+ + GK++FI L
Sbjct: 21 GGLPEIALAGRSNVGKSSFINSL 43
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 3.9
Identities = 25/200 (12%), Positives = 65/200 (32%), Gaps = 13/200 (6%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVVDPK 367
++L+G +GK+TFI+ + G+ PTT + +
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHGSGV-----PTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 368 KQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFE 427
+++ + S + S + +++ E ++ + P + + LF
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 428 DRSSTSNSVQAYIISALRKDMPSVFGK----EGKKKELIKKLDEIYKQIQREYQISPVFG 483
++ + + S L P G + ++ ++K ++ +
Sbjct: 120 NK--KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177
Query: 484 KKKELIKKL-DEIYKQIQRE 502
E I+ + + I +
Sbjct: 178 TDTENIRFVFAAVKDTILQL 197
Score = 26.8 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGI 84
++L+G +GK+TFI+ + G+
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHGSGV 30
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 27.7 bits (61), Expect = 4.0
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 307 PTVMLV---GQYSTGKTTFIRYLLER-DFPGIHIGPEPTT-------DRFIAVMYDEREG 355
PT++ V G + GKTT + L+ I PEP T IA +Y +
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 61
Query: 356 SVPGNALVVDPKKQFRPLDKFGNSFLNRFQC 386
G D + + +
Sbjct: 62 LDQGEISAGDAA---VVMTSAQITMGMPYAV 89
Score = 26.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 57 PTVMLV---GQYSTGKTTFIRYLLER-DFPGIHIGPEP 90
PT++ V G + GKTT + L+ I PEP
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.4 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 56 KPTV-MLVGQYSTGKTTFI----RYLLER 79
P V M+VG TGKTT + ++
Sbjct: 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 38
Score = 27.4 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 306 KPTV-MLVGQYSTGKTTFI----RYLLER 329
P V M+VG TGKTT + ++
Sbjct: 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 38
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.3 bits (60), Expect = 4.0
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 56 KPTV-MLVGQYSTGKTTFI 73
P V ++VG GKTT I
Sbjct: 8 APFVILMVGVNGVGKTTTI 26
Score = 27.3 bits (60), Expect = 4.0
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 306 KPTV-MLVGQYSTGKTTFI 323
P V ++VG GKTT I
Sbjct: 8 APFVILMVGVNGVGKTTTI 26
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 27.7 bits (61), Expect = 4.2
Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 469 YKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQIS-PGDFPK------VEKMQELLQ 521
+ EY++ F + + + EI K I+ + P + + + +
Sbjct: 69 FSNYMEEYKV--DFKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFD 126
Query: 522 HHDFTKFQTLRPRLIEVADKMLAEDIA 548
+ D F ++ ++ + I
Sbjct: 127 NSDTKGFVNAINLYNKMIREIPRQRII 153
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
subtilis [TaxId: 1423]}
Length = 110
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 452 FGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQI 499
G+E +E + + + +Q+ +IS + ++ + + E+ K I
Sbjct: 56 AGEE-ITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKII 102
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 4.7
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIH 85
+ ++G +GK++ I L + +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLE 34
Score = 26.9 bits (58), Expect = 4.7
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIH 335
+ ++G +GK++ I L + +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLE 34
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 26.4 bits (58), Expect = 5.2
Identities = 8/25 (32%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 23 LKKVYKNKLLPLEQAYHFHDFHSPP 47
LKK Y L E PP
Sbjct: 93 LKKQYIQCLYAFEC-KIERGEDPPP 116
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.0 bits (59), Expect = 5.5
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 172 VDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
VD+ +L+F A + S R + + +D + I + K D+++ Q A
Sbjct: 11 VDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYA 67
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 25.5 bits (56), Expect = 5.7
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 486 KELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRLI 536
++ K + + + ++IS ++ +LL H K Q P LI
Sbjct: 10 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 60
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.8 bits (58), Expect = 5.8
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 2/87 (2%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVDP 366
V+ VG GK+TFI+ L + + R+G
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPD 76
Query: 367 KKQFRPLDKFGNSFLNRFQCSLVNSPV 393
+ +C + +
Sbjct: 77 VPSRARYIQCAKDAGVPCRCFNFCATI 103
Score = 26.0 bits (56), Expect = 8.7
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 46 PPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLER 79
P V+ VG GK+TFI+ L
Sbjct: 4 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVS 37
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 6.3
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 38 YHFHDFHSPPYEDADFDAKP--TVMLVGQYSTGKTTFIRYLL 77
+ ++D +P +D + + TV VG GK+T I +
Sbjct: 24 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 25.8 bits (57), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 459 KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQI 499
K++ KQIQ +S F K+++L L +I K +
Sbjct: 63 ASFQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYLSDIEKIV 103
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 27.1 bits (60), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 335 HIGPEPTTDRFIAVMYDEREGSVPGNALV 363
IG +PT F +V+ E G P + LV
Sbjct: 87 KIGADPTGLPFNSVIALELHGGKPLSPLV 115
Score = 26.3 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 HIGPEPTTDRFIAVMYDEREGSVPFSPL 112
IG +PT F +V+ E G P SPL
Sbjct: 87 KIGADPTGLPFNSVIALELHGGKPLSPL 114
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.6 bits (57), Expect = 6.5
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 28/183 (15%)
Query: 308 TVMLVGQYSTGKTTFIRYLLER------DFPGIHIGPEPTTDRFIAVMYDEREGSVPGNA 361
V +VG+ + GK+T +L + PG P Y + +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 362 LVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVAR-------------VY 408
V+P+ + + + + ++ +G Q +A
Sbjct: 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNK 129
Query: 409 IGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEI 468
+ +D +LF ++ + SA + + +I ++
Sbjct: 130 WDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW-----NID----RMIDAMNLA 180
Query: 469 YKQ 471
Y
Sbjct: 181 YAS 183
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 25.6 bits (56), Expect = 6.6
Identities = 8/86 (9%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 466 DEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDF 525
++ ++ I +Q+ ++ ++ L + + RE ++ + E + + ++
Sbjct: 4 EDAWRDITNAWQLRT---RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPG 60
Query: 526 TKFQTLRPRLIEVADKMLAEDIAHLL 551
+ + L + + + L+
Sbjct: 61 SLGELDSLGLSGSEIRFHGKTLLALV 86
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 6.6
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKF 118
V+L G + GK+T +R L ER P +H TT D + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERI-PNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 63
Query: 119 GNSFLNRFQC 128
L +
Sbjct: 64 QGELLEWAEI 73
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 26.2 bits (56), Expect = 7.9
Identities = 7/49 (14%), Positives = 11/49 (22%), Gaps = 12/49 (24%)
Query: 278 NAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326
KL + R A +++ G I L
Sbjct: 8 RPDFEKLVASYQAGRGHHA------------LLIQALPGMGDDALIYAL 44
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.3 bits (56), Expect = 8.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIH 85
V+L+G+ GK+T
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDS 32
Score = 26.3 bits (56), Expect = 8.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIH 335
V+L+G+ GK+T
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDS 32
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 26.7 bits (58), Expect = 8.2
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQ 218
+ +D + L DA ++ +S + L+ ++LNKAD D
Sbjct: 14 KLIDIVYELVDA-RIPMSSRNPMIEDILKNK--PRIMLLNKADKADAAV 59
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 101
K ++ +G +GK+T+ R + ++ +I + +A
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEER 47
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD 351
K ++ +G +GK+T+ R + ++ +I + +A
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEER 47
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.2 bits (56), Expect = 8.4
Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366
+ +VG+ + GK+T + LL + + T R + + + ++ + +
Sbjct: 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNR--- 423
+++ + + + V++G + + P++ VN+
Sbjct: 66 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDN 125
Query: 424 --------RLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDE 467
+ +S N + ISA + + K L E
Sbjct: 126 VQEKADLLPHLQFLASQMNFLDIVPISAETGL-----NVDTIAAIVRKHLPE 172
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.4 bits (58), Expect = 8.4
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 49 EDADFDAKP--TVMLVGQYSTGKTTFIRYLL 77
D F+A+P + G GK+T L
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Score = 26.4 bits (58), Expect = 8.4
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 299 EDADFDAKP--TVMLVGQYSTGKTTFIRYLL 327
D F+A+P + G GK+T L
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.1 bits (56), Expect = 8.4
Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 307 PTVMLVGQYSTGKTTFIRYL---LERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363
P +LVG +GK+T R L L + E T R IA ++
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEE 61
Query: 364 VDPKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFW---DQPLVHD 420
+ D + V + + V+ A + +PL+
Sbjct: 62 DVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAG 121
Query: 421 VN-----RRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKL 465
+ R L R+ V + R++ +V + ++ +L
Sbjct: 122 PDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVV------RHILSRL 165
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.1 bits (56), Expect = 8.5
Identities = 25/175 (14%), Positives = 38/175 (21%), Gaps = 27/175 (15%)
Query: 59 VMLVGQYSTGKTTFIRYLLER----------------DFPGIHIGPEPTT-----DRFIA 97
V L G GKTT I E G IG + T
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 98 VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR 157
V + G + Q +L S + E +++
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLT----SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL 119
Query: 158 GYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212
I+L +E +R D + K +
Sbjct: 120 FSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVTKEN 172
Score = 26.1 bits (56), Expect = 9.5
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 309 VMLVGQYSTGKTTFIRYLLER 329
V L G GKTT I E
Sbjct: 4 VFLTGPPGVGKTTLIHKASEV 24
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 84
Score = 25.1 bits (55), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 3 SWMSKNEDSSPEMYETVLEGLKKV 26
SW+ KN+ + E +E + L+KV
Sbjct: 43 SWLDKNQTAEKEEFEHQQKELEKV 66
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 26.4 bits (57), Expect = 8.7
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 459 KELIKKLDEIYKQIQREYQISPV-------FGKKKELIKKLDEIYKQIQREYQISPGDFP 511
+ +K +++YKQ R I+ ++ E + + +I+
Sbjct: 20 RVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKN 79
Query: 512 KVEKMQELLQHHDFTK 527
K+ K++E+L+ H K
Sbjct: 80 KIRKLREILERHRKDK 95
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.4 bits (57), Expect = 8.8
Identities = 21/172 (12%), Positives = 46/172 (26%), Gaps = 21/172 (12%)
Query: 57 PTVMLVGQYSTGKTTFI----RYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPL 112
V + G GK+T I L + +P++ R + ++
Sbjct: 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMAR---- 107
Query: 113 DKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV 172
L + + + G G+D V +
Sbjct: 108 ----------LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 157
Query: 173 DRIILLFDAHKLDI-SDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMR 221
+ + L + ++ ++ + I +NKAD D ++
Sbjct: 158 ETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRAS 209
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 203
Score = 26.2 bits (57), Expect = 9.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 459 KELIKKLDEIYKQIQREYQISP---VFGKKKELIKKLDEIYKQIQR 501
EL KL I KQ +++ + SP V G+ +K ++ I +++ R
Sbjct: 17 GELKIKLRGIRKQYRKQNKHSPIEFVTGR----VKPIESIKEKMAR 58
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.1 bits (57), Expect = 9.9
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 50 DADFDAKP--TVMLVGQYSTGKTTFIRY---LLERDFPGIHIGPEPTTDRFIAVMYDERE 104
+++G +GK+T I L+ D ++ + T++ A +Y
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 105 GSVPFSP 111
+P
Sbjct: 82 VRTFQTP 88
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 10.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 59 VMLVGQYSTGKTTFIRYLLERD 80
+++VG+ + GK+T + LL D
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNED 24
Score = 25.7 bits (55), Expect = 10.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 309 VMLVGQYSTGKTTFIRYLLERD 330
+++VG+ + GK+T + LL D
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNED 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.412
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,168,707
Number of extensions: 110492
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 242
Length of query: 551
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,171,896
Effective search space: 540244056
Effective search space used: 540244056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)