BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11746
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 29 PMDDEARVAAPVLKGGAFDGVKDMVSPFGYKRGEGIDAGQGEPDWIVNKDRHKYDSIFSS 88
P+ E+ + + V+KGGAFDG M PFG+ GEG G + +W+V KD+ YD IF +
Sbjct: 2 PLGSESLMPSQVVKGGAFDGT--MNGPFGHGYGEGAGEGIDDVEWVVGKDKPTYDEIFYT 59
Query: 89 LNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148
L+PV+GK+TGANAK EMVKSKLPN+VLGKIWKL+DVDKDG LD +EFALA HLI+VK+ G
Sbjct: 60 LSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEG 119
Query: 149 YDIPTELPDHLVPPSKR 165
+++P +LP HLVPPSKR
Sbjct: 120 HELPADLPPHLVPPSKR 136
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 113/163 (69%), Gaps = 10/163 (6%)
Query: 9 VLQVVDKMLSEDIAHLMQQIPMDDEARVAAPVLKGGAFDGVKDMVSPFGYKRG------E 62
+L+ +D ML++DIA LM + ++ V A V GGAF+G + + PF +RG +
Sbjct: 385 LLEALDDMLAQDIAKLMPLLRQEELESVEAGV-AGGAFEGTR--MGPF-VERGPDEAIED 440
Query: 63 GIDAGQGEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLS 122
G + + + +W+V KD+ KYD IF +L P DGK++G+ AK MV +KLPNSVLG+IWKLS
Sbjct: 441 GEEGSEDDAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVGTKLPNSVLGRIWKLS 500
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
DVD+DG LD +EFALA HLI+ K+ G+ +PT LP LVPPSKR
Sbjct: 501 DVDRDGMLDDEEFALASHLIEAKLEGHGLPTNLPRRLVPPSKR 543
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex With
Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 84/99 (84%)
Query: 67 GQGEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDK 126
G + +W+V KD+ YD IF +L+PV+GK+TGANAK EMVKSKLPN+VLGKIWKL+DVDK
Sbjct: 4 GSDDVEWVVGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDK 63
Query: 127 DGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
DG LD +EFALA HLI+VK+ G+++P +LP HLVPPSKR
Sbjct: 64 DGLLDDEEFALANHLIKVKLEGHELPADLPPHLVPPSKR 102
>pdb|2JXC|A Chain A, Structure Of The Eps15-Eh2 Stonin2 Complex
Length = 100
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 69 GEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDG 128
G P + +D+ KYD+IF SL+PV+G ++G K ++ SKLP +LG++W+LSD+D DG
Sbjct: 4 GSPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 63
Query: 129 FLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
LD DEFA+AM L+ + +P LP LVPPSKR
Sbjct: 64 MLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKR 100
>pdb|1EH2|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15, Nmr, 20 Structures
Length = 106
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 69 GEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDG 128
G P + +D+ KYD+IF SL+PV+G ++G K ++ SKLP +LG++W+LSD+D DG
Sbjct: 4 GSPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDG 63
Query: 129 FLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
LD DEFA+AM L+ + +P LP LVPPSKR
Sbjct: 64 MLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKR 100
>pdb|1F8H|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfr
Length = 95
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 73 WIVN-KDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLD 131
W V +D+ KYD+IF SL+PV+G ++G K ++ SKLP +LG++W+LSD+D DG LD
Sbjct: 2 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLD 61
Query: 132 ADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
DEFA+AM L+ + +P LP LVPPSKR
Sbjct: 62 RDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKR 95
>pdb|1FF1|A Chain A, Structure Of The Second Eps15 Homology Domain Of Human
Eps15 In Complex With Ptgssstnpfl
Length = 95
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 73 WIVN-KDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLD 131
W V +D+ KYD+IF SL+PV+G ++G K ++ SKLP +LG++W+LSD+D DG LD
Sbjct: 2 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLD 61
Query: 132 ADEFALAMHLIQVKIGGYDIPTELPDHLVPPSK 164
DEFA+AM L+ + +P LP LVPPSK
Sbjct: 62 RDEFAVAMFLVYCALEKEPVPMSLPPALVPPSK 94
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 72 DWIV-NKDRHKYDSIFSSLN-PVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGF 129
+W V R KY +F+S + + G +TG A+ +++S LP + L IW LSD+D+DG
Sbjct: 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGK 64
Query: 130 LDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
L A+EF LAMHLI V + G +P LP +PPS R
Sbjct: 65 LTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFR 100
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 74 IVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDAD 133
I ++R K+D F SL P+ G +TG A+ +S LP VL +IW L+D++ DG +D
Sbjct: 27 ITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQV 86
Query: 134 EFALAMHLIQVKIGGYDIPTELP 156
EF++AM LI++K+ GY +P+ LP
Sbjct: 87 EFSIAMKLIKLKLQGYQLPSALP 109
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 74 IVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDA 132
I ++ R Y + F ++ P ++G + G+ AK KSKLP L IW+LSD DKDG L
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTL 62
Query: 133 DEFALAMHLIQVKIGGYDIPTELPDHLVP 161
DEF A HL+ + GYD+P +LP+ L+P
Sbjct: 63 DEFCAAFHLVVARKNGYDLPEKLPESLMP 91
>pdb|3FIA|A Chain A, Crystal Structure Of The Eh 1 Domain From Human
Intersectin- 1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 74 IVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDAD 133
I ++R K+D F SL P+ G +TG A+ +S LP VL +IW L+D + DG D
Sbjct: 27 ITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQV 86
Query: 134 EFALAMHLIQVKIGGYDIPTELP 156
EF++A LI++K+ GY +P+ LP
Sbjct: 87 EFSIAXKLIKLKLQGYQLPSALP 109
>pdb|1C07|A Chain A, Structure Of The Third Eps15 Homology Domain Of Human
Eps15
Length = 95
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 73 WIVN-KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFL 130
W+V+ ++ KYD IF + +DG V+G + +K+ LP+++L IW L D G L
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKL 61
Query: 131 DADEFALAMHLIQVK-IGGYDIPTELPDHLVPPS 163
D+FALA HLI K I G D P L ++PPS
Sbjct: 62 SKDQFALAFHLISQKLIKGIDPPHVLTPEMIPPS 95
>pdb|1IQ3|A Chain A, Solution Structure Of The Eps15 Homology Domain Of A Human
Pob1
Length = 110
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 70 EPDWIVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDG 128
EP I + R Y + F SL P ++G+ AK KSKL L IW+LSD D DG
Sbjct: 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDG 71
Query: 129 FLDADEFALAMHLIQVKIGGYDIPTELPDHLVP 161
L EF A HLI + GY +P LP L P
Sbjct: 72 ALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQP 104
>pdb|1QJT|A Chain A, Solution Structure Of The Apo Eh1 Domain Of Mouse
Epidermal Growth Factor Receptor Substrate 15, Eps15
Length = 99
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 94 GKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPT 153
G+V +A A + KS LP+ +LGKIW L+D D G L EF +A+ L+ G ++
Sbjct: 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSL 85
Query: 154 ELPDHLVPPSKRGD 167
VPP + D
Sbjct: 86 SSLSLAVPPPRFHD 99
>pdb|1ZKJ|A Chain A, Structural Basis For The Extended Substrate Spectrum Of
Cmy- 10, A Plasmid-encoded Class C Beta-lactamase
Length = 359
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 5 HTCFVLQVVDKMLSEDI---AHLMQQIPMDDEARVAAPVLKGGAFDGV 49
T F + V K L+ + A + + +DD+A AP LKG AFD +
Sbjct: 58 QTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASRHAPWLKGSAFDSI 105
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 96 VTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142
+ G N KA N + +++ D +KDGF+D EF A++LI
Sbjct: 48 LQGLNQKA--------NKHIDQVYNTFDTNKDGFVDFLEFIAAVNLI 86
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 88 SLNPVDGKVTGANAKAEM--------VKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ N D +G K E+ + K N VLG+ +D +KD +D DEF M
Sbjct: 440 AFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGE----ADQNKDNMIDFDEFVSMM 495
Query: 140 HLI 142
H I
Sbjct: 496 HKI 498
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 119 WKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKRGD 167
+KL D+D DG++ +E + I +G ELP+ P KR D
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGN---TVELPEEENTPEKRVD 150
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 68 QGEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVL 115
Q P+ ++ H YD F+S ++G +KAE+VKS+ N L
Sbjct: 1010 QTNPEXSWSEGXHIYDQGFNSGTLKHWTISGDASKAEIVKSQGANDXL 1057
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 98 GANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFA-LAMHLIQV-KIGGYDIPTEL 155
G+ A++ + S + S +IW D D G+L+ E L L+Q K G ++ E+
Sbjct: 1 GSMAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEM 60
Query: 156 PDHLVPPSKRGDAR 169
+ +R D +
Sbjct: 61 KTFVDQYGQRDDGK 74
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 79 RHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKI--WKLSDVDKDGFLDADEFA 136
R +++F + VD +G +A ++K +L K+ W L+ K F+DAD
Sbjct: 49 RKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLV 108
Query: 137 LA 138
LA
Sbjct: 109 LA 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,791,734
Number of Sequences: 62578
Number of extensions: 255519
Number of successful extensions: 698
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 38
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)