Query psy11746
Match_columns 172
No_of_seqs 217 out of 1050
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:53:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954|consensus 100.0 9.9E-45 2.1E-49 317.6 12.2 159 4-167 373-531 (532)
2 PF12763 EF-hand_4: Cytoskelet 100.0 1.9E-30 4.1E-35 192.6 8.1 94 76-169 6-101 (104)
3 KOG1029|consensus 99.9 5.6E-23 1.2E-27 191.6 9.9 99 71-169 185-285 (1118)
4 smart00027 EH Eps15 homology d 99.8 6.1E-20 1.3E-24 132.8 11.3 94 72-165 1-96 (96)
5 KOG1029|consensus 99.8 5.5E-20 1.2E-24 171.8 9.2 91 70-160 5-96 (1118)
6 KOG1955|consensus 99.8 8.3E-20 1.8E-24 164.7 7.4 91 71-161 221-313 (737)
7 KOG0998|consensus 99.5 1.9E-14 4.2E-19 138.4 8.1 98 70-167 118-218 (847)
8 KOG0998|consensus 99.4 1.2E-13 2.7E-18 132.9 4.1 100 71-170 271-375 (847)
9 cd00052 EH Eps15 homology doma 99.3 9.6E-12 2.1E-16 82.5 7.8 66 82-147 1-67 (67)
10 PF13499 EF-hand_7: EF-hand do 99.0 1.4E-09 2.9E-14 72.6 6.8 59 81-139 1-66 (66)
11 cd05022 S-100A13 S-100A13: S-1 98.8 2.7E-08 5.8E-13 71.9 8.1 70 79-148 7-82 (89)
12 cd05027 S-100B S-100B: S-100B 98.7 1.5E-07 3.3E-12 67.5 8.7 68 79-146 7-84 (88)
13 cd05025 S-100A1 S-100A1: S-100 98.6 2E-07 4.3E-12 66.6 8.2 70 79-148 8-87 (92)
14 cd05029 S-100A6 S-100A6: S-100 98.6 2.7E-07 5.9E-12 66.2 7.9 66 80-145 10-83 (88)
15 cd05026 S-100Z S-100Z: S-100Z 98.6 2.7E-07 5.9E-12 66.6 7.7 68 79-146 9-86 (93)
16 KOG0027|consensus 98.6 2.4E-07 5.2E-12 71.7 7.4 63 78-140 83-148 (151)
17 cd05023 S-100A11 S-100A11: S-1 98.6 6.8E-07 1.5E-11 64.3 9.0 69 78-146 7-85 (89)
18 cd05031 S-100A10_like S-100A10 98.5 7E-07 1.5E-11 64.1 8.5 68 79-146 7-84 (94)
19 cd00213 S-100 S-100: S-100 dom 98.5 1E-06 2.2E-11 62.1 8.7 68 76-143 4-81 (88)
20 PF13833 EF-hand_8: EF-hand do 98.5 6.3E-07 1.4E-11 57.6 6.2 49 92-140 1-52 (54)
21 PTZ00183 centrin; Provisional 98.4 1.1E-06 2.3E-11 66.6 8.3 67 76-142 13-82 (158)
22 COG5126 FRQ1 Ca2+-binding prot 98.4 8.2E-07 1.8E-11 70.7 7.4 63 77-139 89-154 (160)
23 PTZ00184 calmodulin; Provision 98.4 1.8E-06 3.8E-11 64.4 8.2 67 76-142 7-76 (149)
24 KOG0027|consensus 98.3 2.9E-06 6.2E-11 65.6 8.0 70 76-145 4-76 (151)
25 cd00051 EFh EF-hand, calcium b 98.3 3.9E-06 8.5E-11 52.5 6.7 58 82-139 2-62 (63)
26 cd00252 SPARC_EC SPARC_EC; ext 98.2 5.5E-06 1.2E-10 62.6 7.6 62 76-139 44-106 (116)
27 cd05030 calgranulins Calgranul 98.2 1.2E-05 2.6E-10 57.4 8.1 66 79-144 7-82 (88)
28 PTZ00183 centrin; Provisional 98.2 9.1E-06 2E-10 61.5 7.8 62 79-140 89-153 (158)
29 KOG0041|consensus 98.1 8.8E-06 1.9E-10 67.3 6.7 73 71-143 90-165 (244)
30 PTZ00184 calmodulin; Provision 98.1 2.5E-05 5.4E-10 58.2 7.9 61 79-139 83-146 (149)
31 cd05024 S-100A10 S-100A10: A s 98.0 4.6E-05 1E-09 55.5 8.0 66 80-145 8-80 (91)
32 PF14658 EF-hand_9: EF-hand do 97.9 6.5E-05 1.4E-09 51.6 6.6 58 84-141 2-64 (66)
33 COG5126 FRQ1 Ca2+-binding prot 97.8 8.3E-05 1.8E-09 59.3 7.8 67 76-143 16-85 (160)
34 KOG0034|consensus 97.7 0.00014 3E-09 59.3 7.9 64 79-142 103-176 (187)
35 PF00036 EF-hand_1: EF hand; 97.6 8.3E-05 1.8E-09 42.9 3.0 27 114-140 1-27 (29)
36 KOG0028|consensus 97.4 0.00065 1.4E-08 54.4 7.3 63 78-140 104-169 (172)
37 KOG0037|consensus 97.3 0.00079 1.7E-08 56.1 7.3 65 79-143 123-190 (221)
38 KOG0044|consensus 97.3 0.00079 1.7E-08 55.2 6.3 62 77-140 99-174 (193)
39 PLN02964 phosphatidylserine de 97.2 0.0016 3.4E-08 61.9 8.5 65 77-141 176-243 (644)
40 KOG0044|consensus 97.1 0.0023 5E-08 52.5 7.4 74 79-152 63-139 (193)
41 KOG0377|consensus 97.1 0.0019 4.2E-08 59.0 7.5 67 79-145 546-619 (631)
42 PRK12309 transaldolase/EF-hand 97.0 0.0015 3.3E-08 58.7 6.5 54 79-143 333-387 (391)
43 KOG0046|consensus 96.9 0.0037 8E-08 58.1 8.1 75 71-145 6-89 (627)
44 KOG0031|consensus 96.9 0.005 1.1E-07 49.2 7.5 62 79-140 100-164 (171)
45 PLN02964 phosphatidylserine de 96.8 0.0032 6.8E-08 59.9 6.8 68 70-141 131-207 (644)
46 PF13405 EF-hand_6: EF-hand do 96.8 0.0026 5.6E-08 36.6 3.9 25 82-106 2-27 (31)
47 PF14788 EF-hand_10: EF hand; 96.6 0.0084 1.8E-07 39.2 5.8 47 95-141 1-49 (51)
48 PF13405 EF-hand_6: EF-hand do 96.6 0.0023 5E-08 36.8 2.9 27 114-140 1-27 (31)
49 PF13202 EF-hand_5: EF hand; P 96.6 0.0023 4.9E-08 35.6 2.6 24 115-138 1-24 (25)
50 KOG0028|consensus 96.6 0.0083 1.8E-07 48.1 6.7 65 76-140 29-96 (172)
51 KOG4223|consensus 96.5 0.0033 7.2E-08 55.1 4.4 64 69-136 234-300 (325)
52 PF00036 EF-hand_1: EF hand; 96.5 0.0054 1.2E-07 35.2 3.7 26 82-107 2-28 (29)
53 KOG0036|consensus 96.5 0.012 2.7E-07 53.3 7.8 64 77-140 11-78 (463)
54 KOG0030|consensus 96.5 0.01 2.3E-07 46.6 6.4 71 76-146 7-82 (152)
55 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0024 5.1E-08 47.9 1.9 60 78-137 52-112 (113)
56 KOG0037|consensus 95.9 0.043 9.3E-07 45.9 7.9 68 79-146 56-127 (221)
57 KOG0036|consensus 95.9 0.019 4E-07 52.2 5.9 67 76-142 78-147 (463)
58 PF13499 EF-hand_7: EF-hand do 95.5 0.013 2.9E-07 38.4 2.7 29 115-143 2-30 (66)
59 KOG0030|consensus 95.4 0.061 1.3E-06 42.3 6.6 58 80-138 88-148 (152)
60 PF13202 EF-hand_5: EF hand; P 95.2 0.034 7.3E-07 30.8 3.3 23 83-105 2-25 (25)
61 smart00054 EFh EF-hand, calciu 95.2 0.027 5.9E-07 29.4 2.9 26 115-140 2-27 (29)
62 KOG0038|consensus 94.9 0.051 1.1E-06 43.4 4.7 53 85-137 113-173 (189)
63 KOG4223|consensus 94.7 0.06 1.3E-06 47.3 5.1 65 77-141 74-141 (325)
64 KOG0040|consensus 94.7 0.087 1.9E-06 54.4 6.9 64 76-139 2249-2322(2399)
65 KOG0031|consensus 94.7 0.21 4.5E-06 40.1 7.7 67 76-149 28-97 (171)
66 KOG0034|consensus 94.6 0.13 2.9E-06 41.8 6.7 62 82-143 68-134 (187)
67 KOG2643|consensus 94.3 0.023 5E-07 51.8 1.8 54 92-145 212-265 (489)
68 KOG4251|consensus 93.6 0.067 1.4E-06 46.0 3.1 61 77-137 98-164 (362)
69 PF05517 p25-alpha: p25-alpha 92.8 0.83 1.8E-05 35.8 8.2 66 83-148 2-76 (154)
70 cd00051 EFh EF-hand, calcium b 92.2 0.26 5.6E-06 30.0 3.7 28 115-142 2-29 (63)
71 smart00054 EFh EF-hand, calciu 91.7 0.33 7.1E-06 24.9 3.3 26 82-107 2-28 (29)
72 KOG0377|consensus 91.7 0.95 2.1E-05 41.9 8.1 68 81-148 465-582 (631)
73 PF09279 EF-hand_like: Phospho 91.5 0.43 9.4E-06 32.9 4.6 58 82-139 2-67 (83)
74 PF13833 EF-hand_8: EF-hand do 89.8 0.65 1.4E-05 29.1 3.9 29 79-107 24-53 (54)
75 PF14788 EF-hand_10: EF hand; 88.3 0.93 2E-05 29.6 3.8 31 77-107 18-49 (51)
76 KOG2643|consensus 85.9 0.4 8.7E-06 44.0 1.5 59 93-153 402-463 (489)
77 cd00213 S-100 S-100: S-100 dom 84.5 1.5 3.2E-05 30.3 3.6 29 113-141 8-38 (88)
78 KOG3555|consensus 83.0 1.6 3.4E-05 39.2 3.9 53 85-139 255-308 (434)
79 smart00027 EH Eps15 homology d 81.5 2.2 4.8E-05 30.1 3.6 29 113-141 10-38 (96)
80 cd00052 EH Eps15 homology doma 80.8 2.3 5E-05 27.1 3.2 25 117-141 3-27 (67)
81 KOG4065|consensus 79.4 3.1 6.8E-05 32.0 3.9 54 85-138 72-142 (144)
82 KOG0042|consensus 77.3 5 0.00011 38.3 5.3 69 75-143 588-659 (680)
83 cd05025 S-100A1 S-100A1: S-100 75.3 4.3 9.3E-05 28.4 3.5 28 113-140 9-38 (92)
84 PF05042 Caleosin: Caleosin re 74.1 7 0.00015 31.7 4.8 55 79-134 95-159 (174)
85 cd00252 SPARC_EC SPARC_EC; ext 72.3 6.2 0.00013 29.6 3.9 29 111-139 46-74 (116)
86 cd05027 S-100B S-100B: S-100B 69.7 7 0.00015 27.6 3.5 29 113-141 8-38 (88)
87 cd05031 S-100A10_like S-100A10 66.9 8.3 0.00018 27.1 3.4 29 113-141 8-38 (94)
88 KOG2562|consensus 66.0 5.7 0.00012 36.8 2.9 52 83-134 314-372 (493)
89 KOG4578|consensus 65.2 6.5 0.00014 35.3 3.0 54 86-139 339-396 (421)
90 TIGR03830 CxxCG_CxxCG_HTH puta 63.7 13 0.00029 27.1 4.2 48 73-120 41-89 (127)
91 cd05026 S-100Z S-100Z: S-100Z 63.3 11 0.00025 26.6 3.6 30 78-107 51-81 (93)
92 KOG4347|consensus 62.4 14 0.00029 35.7 4.8 62 71-135 548-612 (671)
93 KOG4004|consensus 61.4 3.8 8.2E-05 34.3 0.9 54 86-140 193-249 (259)
94 KOG4251|consensus 60.6 23 0.0005 30.8 5.5 53 89-141 290-345 (362)
95 PF10334 DUF2421: Protein of u 60.2 31 0.00067 28.4 6.1 77 79-161 83-161 (229)
96 cd05024 S-100A10 S-100A10: A s 59.8 14 0.0003 26.8 3.5 31 76-106 44-75 (91)
97 PF00404 Dockerin_1: Dockerin 58.9 16 0.00034 19.5 2.7 18 123-140 1-18 (21)
98 cd05030 calgranulins Calgranul 58.8 16 0.00034 25.6 3.6 29 79-107 50-79 (88)
99 cd05022 S-100A13 S-100A13: S-1 58.7 15 0.00032 26.2 3.4 29 113-141 8-37 (89)
100 cd05023 S-100A11 S-100A11: S-1 58.0 17 0.00036 25.8 3.6 31 77-107 49-80 (89)
101 KOG2562|consensus 57.2 12 0.00027 34.7 3.5 55 83-137 142-198 (493)
102 PF12174 RST: RCD1-SRO-TAF4 (R 55.9 20 0.00043 24.7 3.6 48 95-143 8-55 (70)
103 cd05029 S-100A6 S-100A6: S-100 51.7 23 0.00051 24.9 3.6 29 79-107 50-79 (88)
104 PRK12309 transaldolase/EF-hand 51.2 26 0.00057 31.7 4.6 33 110-142 331-363 (391)
105 KOG0751|consensus 48.4 21 0.00045 33.9 3.5 64 78-144 106-178 (694)
106 KOG0751|consensus 48.0 53 0.0011 31.3 6.0 45 92-136 87-131 (694)
107 KOG3866|consensus 47.7 28 0.0006 31.2 4.0 55 85-139 249-322 (442)
108 PF08976 DUF1880: Domain of un 46.7 15 0.00032 28.0 1.9 28 110-137 4-31 (118)
109 PF14747 DUF4473: Domain of un 46.4 31 0.00066 24.1 3.4 35 94-128 4-38 (82)
110 PF09069 EF-hand_3: EF-hand; 44.3 1.2E+02 0.0026 21.9 7.4 59 80-140 3-74 (90)
111 KOG0041|consensus 41.9 27 0.00058 29.4 2.9 33 112-144 98-130 (244)
112 PF04225 OapA: Opacity-associa 39.7 30 0.00066 24.4 2.6 29 97-125 9-37 (85)
113 PRK09430 djlA Dna-J like membr 38.3 1.1E+02 0.0023 26.1 6.2 64 77-140 50-119 (267)
114 cd07313 terB_like_2 tellurium 36.4 71 0.0015 22.3 4.2 21 113-135 74-94 (104)
115 PF14658 EF-hand_9: EF-hand do 36.1 74 0.0016 21.7 3.9 29 79-107 34-64 (66)
116 TIGR02675 tape_meas_nterm tape 34.1 61 0.0013 22.2 3.3 24 84-107 17-42 (75)
117 KOG0169|consensus 33.6 79 0.0017 31.1 5.0 62 79-140 135-199 (746)
118 KOG3555|consensus 29.6 36 0.00079 30.8 1.9 41 80-120 282-324 (434)
119 KOG0035|consensus 29.0 97 0.0021 31.2 4.9 61 79-139 746-814 (890)
120 KOG2243|consensus 27.7 1.1E+02 0.0024 33.2 5.1 55 86-140 4063-4119(5019)
121 KOG4347|consensus 26.5 87 0.0019 30.4 3.9 34 110-143 552-585 (671)
122 KOG3866|consensus 24.5 46 0.001 29.9 1.6 40 97-136 225-267 (442)
123 PRK14136 recX recombination re 23.8 5.1E+02 0.011 22.9 9.1 60 77-140 160-219 (309)
124 PLN02952 phosphoinositide phos 23.4 2E+02 0.0043 27.7 5.8 46 93-139 14-63 (599)
125 COG2818 Tag 3-methyladenine DN 23.0 26 0.00055 28.8 -0.2 39 71-109 45-85 (188)
126 PF02022 Integrase_Zn: Integra 21.8 1.4E+02 0.003 18.3 3.0 24 101-124 12-35 (40)
127 cd08313 Death_TNFR1 Death doma 20.9 1.3E+02 0.0028 21.1 3.1 47 95-148 8-54 (80)
128 KOG1707|consensus 20.7 72 0.0016 30.7 2.2 24 112-135 194-217 (625)
129 cd08315 Death_TRAILR_DR4_DR5 D 20.6 1.7E+02 0.0037 21.0 3.8 39 80-121 4-42 (96)
130 PLN02222 phosphoinositide phos 20.4 3.3E+02 0.0072 26.1 6.6 61 78-139 23-88 (581)
131 smart00548 IRO Motif in Iroquo 20.3 18 0.00039 20.3 -1.1 11 117-127 7-17 (26)
132 PF05042 Caleosin: Caleosin re 20.3 1.4E+02 0.003 24.3 3.5 50 112-161 6-69 (174)
No 1
>KOG1954|consensus
Probab=100.00 E-value=9.9e-45 Score=317.64 Aligned_cols=159 Identities=57% Similarity=0.957 Sum_probs=152.6
Q ss_pred ccccchHHHHHHHhHHHHHHHHhcCccchhhhhccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHH
Q psy11746 4 YHTCFVLQVVDKMLSEDIAHLMQQIPMDDEARVAAPVLKGGAFDGVKDMVSPFGYKRGEGIDAGQGEPDWIVNKDRHKYD 83 (172)
Q Consensus 4 ~~~~~~i~~~d~~l~~di~~lm~~ip~e~~~~~~~~~~~gg~~~~~~~~~~Pf~~~~~~~~~~g~~~~~W~~~~e~~~y~ 83 (172)
|-|+|+|+.||+||+.|||+||.++++|+ ...+.+.|+||||+++ ..+||+ +|+|..+|.++.+|++.+++..|+
T Consensus 373 ~lkpklle~vD~mla~di~~Lm~~~kkee-~~~~~~~v~GgAf~~t--t~gpfg--~geg~~eg~d~~ewvv~~dk~~yd 447 (532)
T KOG1954|consen 373 PLKPKLLEVVDDMLAYDIAELMGKIKKEE-EAAPQDGVIGGAFPGT--TEGPFG--YGEGAGEGADEAEWVVSKDKPTYD 447 (532)
T ss_pred ccCccHHHHHHHHHHhhHHHHHHHhcchh-hhCccccccccccCCc--ccCCCC--CCcccccCCcccceeeecCCcchH
Confidence 67999999999999999999999999999 6677888999999999 899994 558888999999999999999999
Q ss_pred HHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy11746 84 SIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPS 163 (172)
Q Consensus 84 ~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G~~LP~~LP~~L~pps 163 (172)
++|++|.|.+|+|||..++..|.+|+||+++|++||+|+|+|+||+||.+||++|-|||+.+++|++||.+||+||+|||
T Consensus 448 e~fy~l~p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghelp~~lp~hl~pps 527 (532)
T KOG1954|consen 448 EIFYTLSPVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHELPSELPKHLVPPS 527 (532)
T ss_pred hhhhcccccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccCccccCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy11746 164 KRGD 167 (172)
Q Consensus 164 ~r~~ 167 (172)
+|..
T Consensus 528 ~r~~ 531 (532)
T KOG1954|consen 528 KRGE 531 (532)
T ss_pred cccC
Confidence 9974
No 2
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.96 E-value=1.9e-30 Score=192.56 Aligned_cols=94 Identities=50% Similarity=0.908 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC--CCCCC
Q psy11746 76 NKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG--YDIPT 153 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G--~~LP~ 153 (172)
++|+.+|..+|+.+++.+|+|+|++++.+|.+|+||.++|++||+|+|.|+||+||++||++|||||..+++| .+||.
T Consensus 6 ~~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~lP~ 85 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPLPS 85 (104)
T ss_dssp CCHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS---S
T ss_pred HHHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCCch
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988754 59999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy11746 154 ELPDHLVPPSKRGDAR 169 (172)
Q Consensus 154 ~LP~~L~pps~r~~~~ 169 (172)
+||++|+|||+|...+
T Consensus 86 ~LP~~L~p~s~~~~~~ 101 (104)
T PF12763_consen 86 SLPPSLIPPSKRPLVQ 101 (104)
T ss_dssp SSSGGGSSSCG-----
T ss_pred hcCHHHCCCCcccccc
Confidence 9999999999998644
No 3
>KOG1029|consensus
Probab=99.88 E-value=5.6e-23 Score=191.60 Aligned_cols=99 Identities=43% Similarity=0.787 Sum_probs=95.1
Q ss_pred CCCCC-hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 71 PDWIV-NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 71 ~~W~~-~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
..|.| ...+.+|+++|+.+|+ ..|++||.++|..|..|+||..+|.+||.|+|+|+||+|+.+||++|||||.++..|
T Consensus 185 ~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sG 264 (1118)
T KOG1029|consen 185 EEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSG 264 (1118)
T ss_pred hhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcC
Confidence 58999 5779999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy11746 149 YDIPTELPDHLVPPSKRGDAR 169 (172)
Q Consensus 149 ~~LP~~LP~~L~pps~r~~~~ 169 (172)
.+||.+||+.|||||.|....
T Consensus 265 q~lP~tlP~E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 265 QPLPKTLPPELVPPSFRSSRS 285 (1118)
T ss_pred CCCCCCCChhhcCcccccccC
Confidence 999999999999999997643
No 4
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.83 E-value=6.1e-20 Score=132.80 Aligned_cols=94 Identities=59% Similarity=1.024 Sum_probs=90.5
Q ss_pred CCCC-hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCC
Q psy11746 72 DWIV-NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGY 149 (172)
Q Consensus 72 ~W~~-~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G~ 149 (172)
+|.+ +++...|.++|..+|. ++|+|+.++++.+|.+.+++.+.+.+||+.+|.+++|.|+++||+.+|+++...+.|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 1 DWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 4777 7788999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy11746 150 DIPTELPDHLVPPSKR 165 (172)
Q Consensus 150 ~LP~~LP~~L~pps~r 165 (172)
+||.+||++|+|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
T smart00027 81 PIPASLPPSLIPPSKR 96 (96)
T ss_pred CCCccCCHhhcCCCcC
Confidence 9999999999999987
No 5
>KOG1029|consensus
Probab=99.81 E-value=5.5e-20 Score=171.78 Aligned_cols=91 Identities=43% Similarity=0.795 Sum_probs=87.6
Q ss_pred CCCCCC-hhhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 70 EPDWIV-NKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 70 ~~~W~~-~~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
...|.| ++++.+|++.|..|.++.|+|+|+++|++|.+|+||..+|.+||.|+|.|+||++|..||.+||+||+.++.|
T Consensus 5 ~n~WavT~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 5 TNPWAVTDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred CCccccchHHHHHHHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 368998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q psy11746 149 YDIPTELPDHLV 160 (172)
Q Consensus 149 ~~LP~~LP~~L~ 160 (172)
.+||..|||+|+
T Consensus 85 ~~lP~~LPPsll 96 (1118)
T KOG1029|consen 85 IQLPPVLPPSLL 96 (1118)
T ss_pred CcCCCCCChHHh
Confidence 999999999663
No 6
>KOG1955|consensus
Probab=99.80 E-value=8.3e-20 Score=164.67 Aligned_cols=91 Identities=41% Similarity=0.745 Sum_probs=88.2
Q ss_pred CCCCC-hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 71 PDWIV-NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 71 ~~W~~-~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
..|-| ++.|++|-..|.++.+ -+|+|+|..+|+||.+|+||-.+|.+||.|+|.|+||-|+.+|||.|||||..+++|
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNg 300 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNG 300 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccC
Confidence 57998 7889999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q psy11746 149 YDIPTELPDHLVP 161 (172)
Q Consensus 149 ~~LP~~LP~~L~p 161 (172)
++||..||..|-|
T Consensus 301 ypLPe~LP~~L~P 313 (737)
T KOG1955|consen 301 YPLPESLPHCLHP 313 (737)
T ss_pred CCCCCCCccccCh
Confidence 9999999999987
No 7
>KOG0998|consensus
Probab=99.52 E-value=1.9e-14 Score=138.42 Aligned_cols=98 Identities=48% Similarity=0.799 Sum_probs=92.9
Q ss_pred CCCCCC-hhhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc-
Q psy11746 70 EPDWIV-NKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIG- 147 (172)
Q Consensus 70 ~~~W~~-~~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~- 147 (172)
...|.+ ..++.+|..+|..+.+++|.++|+.++.+|.+++|+...|.+||.++|.|.+|.|++.||++|||||..+++
T Consensus 118 ~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 118 PFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred ccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 367888 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCCCCCCCCCC
Q psy11746 148 -GYDIPTELPDHLVPPSKRGD 167 (172)
Q Consensus 148 -G~~LP~~LP~~L~pps~r~~ 167 (172)
-.+.|..+|+.+|||+++..
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~ 218 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSEL 218 (847)
T ss_pred ccCCCCccCCcccCCcchhcc
Confidence 46999999999999999863
No 8
>KOG0998|consensus
Probab=99.41 E-value=1.2e-13 Score=132.90 Aligned_cols=100 Identities=36% Similarity=0.698 Sum_probs=95.3
Q ss_pred CCC--CC-hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH-
Q psy11746 71 PDW--IV-NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK- 145 (172)
Q Consensus 71 ~~W--~~-~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~- 145 (172)
..| ++ +.++..|.++|.+.|. .+|+|++.+++.+|+.+||+...|.+||.++|++++|+|+++||+++||++..+
T Consensus 271 ~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~ 350 (847)
T KOG0998|consen 271 VSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKR 350 (847)
T ss_pred cccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhh
Confidence 468 77 8999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCC
Q psy11746 146 IGGYDIPTELPDHLVPPSKRGDARP 170 (172)
Q Consensus 146 ~~G~~LP~~LP~~L~pps~r~~~~~ 170 (172)
.+|+.||..||.+++|++.|....+
T Consensus 351 ~~g~~lP~vl~~s~~p~~~~~~~~~ 375 (847)
T KOG0998|consen 351 AEGRSLPSVLPSSLIPSENRKQTNP 375 (847)
T ss_pred hcCCCCcccccccccCccccccCCc
Confidence 8999999999999999999987654
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.32 E-value=9.6e-12 Score=82.46 Aligned_cols=66 Identities=55% Similarity=0.920 Sum_probs=63.0
Q ss_pred HHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q psy11746 82 YDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIG 147 (172)
Q Consensus 82 y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~ 147 (172)
|+++|..+|+ ++|.|+.++++.+|.+.+++++.+.+||+.+|.+++|.|+++||+.+|+++..+++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6789999999 89999999999999999999999999999999999999999999999999998874
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.01 E-value=1.4e-09 Score=72.55 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=52.4
Q ss_pred HHHHHHhhcCC-CCCeeeHHHHHHHHHhcCC------CHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 81 KYDSIFSSLNP-VDGKVTGANAKAEMVKSKL------PNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 81 ~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~L------p~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
+++++|..+|. ++|+|+..+++.++...+. ..+.+.+||+.+|.|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999 9999999999999998764 34667777999999999999999999876
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.81 E-value=2.7e-08 Score=71.86 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCC--CCCeeeHHHHHHHHHh-cC--CCH-HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 79 RHKYDSIFSSLNP--VDGKVTGANAKAEMVK-SK--LPN-SVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 79 ~~~y~~iF~~lD~--~dG~Isg~e~k~~~~~-S~--Lp~-~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
...+.++|+.+|+ ++|+|+.++++.+|.+ .+ ++. +.+..+.+-+|.|+||.|+++||+..|.-+..+..|
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4678999999998 8999999999999988 44 777 999999999999999999999999988877766544
No 12
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.68 E-value=1.5e-07 Score=67.54 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcC-C-CCC-eeeHHHHHHHHHh-----cC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLN-P-VDG-KVTGANAKAEMVK-----SK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 79 ~~~y~~iF~~lD-~-~dG-~Isg~e~k~~~~~-----S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
...+.++|..+| + ++| +|+.++++.+|++ .+ .+.+.+..+++.+|.|+||+++++||+..+.-+..+.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~ 84 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTAC 84 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 467899999998 6 899 6999999999998 55 5678899999999999999999999988877766654
No 13
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.64 E-value=2e-07 Score=66.62 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcC-C-CCC-eeeHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 79 RHKYDSIFSSLN-P-VDG-KVTGANAKAEMVK-S------KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 79 ~~~y~~iF~~lD-~-~dG-~Isg~e~k~~~~~-S------~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
...+.++|+.+| . ++| +|+..+++.+|.+ . ..+.+.+.+|++..|.|++|.|+++||+.+|.-+..+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 467899999997 8 999 5999999999975 2 2478999999999999999999999999999888877544
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.59 E-value=2.7e-07 Score=66.25 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCC--C-CCeeeHHHHHHHHHh-----cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q psy11746 80 HKYDSIFSSLNP--V-DGKVTGANAKAEMVK-----SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145 (172)
Q Consensus 80 ~~y~~iF~~lD~--~-dG~Isg~e~k~~~~~-----S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~ 145 (172)
...-++|++++. + +|+|+.++++.+|.+ .+++.+++.+|++.+|.|++|+|+++||+..|.-+.++
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 456788999987 4 779999999999963 34799999999999999999999999998777665543
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.59 E-value=2.7e-07 Score=66.57 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcC-C-CCC-eeeHHHHHHHHHh------c-CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLN-P-VDG-KVTGANAKAEMVK------S-KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 79 ~~~y~~iF~~lD-~-~dG-~Isg~e~k~~~~~------S-~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
-..+.++|..+| . ++| +||.++++.+|.+ + ..+...+.+|.+..|.|+||.||++||+..|.-+..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~ 86 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 467888999999 4 888 6999999999965 2 34778999999999999999999999999887776553
No 16
>KOG0027|consensus
Probab=98.56 E-value=2.4e-07 Score=71.71 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=58.3
Q ss_pred hHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 78 DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 78 e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
....++++|..+|+ ++|+||.++++.+|.+. +++.+.+..+++.+|.|+||+++++||+..|.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 45689999999999 99999999999999985 47899999999999999999999999998875
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.55 E-value=6.8e-07 Score=64.33 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=58.2
Q ss_pred hHHHHHHHHhh-cCC-CCC-eeeHHHHHHHHHhc-------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q psy11746 78 DRHKYDSIFSS-LNP-VDG-KVTGANAKAEMVKS-------KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 78 e~~~y~~iF~~-lD~-~dG-~Isg~e~k~~~~~S-------~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
.......+|+. .+. ++| +||.+|++.+|.+. +.....+.+||+.+|.|+||.|+++||+..|.-+..+-
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~ 85 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVAC 85 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34678899999 666 655 99999999999874 56789999999999999999999999998877666553
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=7e-07 Score=64.11 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCC--C-CCeeeHHHHHHHHHh-------cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP--V-DGKVTGANAKAEMVK-------SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 79 ~~~y~~iF~~lD~--~-dG~Isg~e~k~~~~~-------S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
...+..+|..+|. + +|+|+..+++.+|.. .+.+.+.+.+|++.+|.+++|.|+++||+.+|.-+....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4678899999985 4 699999999999875 246889999999999999999999999998887666554
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.50 E-value=1e-06 Score=62.08 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHhhcCC---CCCeeeHHHHHHHHHh-cC--C----CHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP---VDGKVTGANAKAEMVK-SK--L----PNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~---~dG~Isg~e~k~~~~~-S~--L----p~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
+++...+..+|..+|+ ++|+|+.++++.++.. .+ + .+..+.+||+..|.+++|.|+++||+..|.-..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4566789999999999 7899999999999975 33 3 489999999999999999999999988766543
No 20
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.46 E-value=6.3e-07 Score=57.59 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=44.6
Q ss_pred CCCeeeHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 92 VDGKVTGANAKAEMVKS--K-LPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 92 ~dG~Isg~e~k~~~~~S--~-Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
.+|+|+.++++.++... + ++.+++..|++.+|.|++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999653 5 8899999999999999999999999998874
No 21
>PTZ00183 centrin; Provisional
Probab=98.45 E-value=1.1e-06 Score=66.65 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
+.+...+..+|..+|+ ++|+|+..+++.++...+ ++...+..+|+..|.+++|.|+++||+.+++..
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 5677889999999999 999999999999998755 688899999999999999999999999887754
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.43 E-value=8.2e-07 Score=70.69 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=58.4
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
..++++...|..+|. ++|+|+..+++.+++.. .++.+.+..+.+.+|.|+||+|++++|+.++
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 347899999999999 99999999999999874 5999999999999999999999999999765
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.40 E-value=1.8e-06 Score=64.43 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
.++...+...|..+|. ++|.|+..+++.++...+ ...+.+.++|+..|.+++|.|+++||+.+++..
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4567889999999999 999999999999988754 568899999999999999999999999888754
No 24
>KOG0027|consensus
Probab=98.32 E-value=2.9e-06 Score=65.64 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~ 145 (172)
..+...+.++|..+|. ++|+|+..++..+|+..+ .+...+..+.+.+|.|++|.|+++||+..|......
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~ 76 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEE 76 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcc
Confidence 3456789999999999 999999999999999876 459999999999999999999999999988866543
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.28 E-value=3.9e-06 Score=52.52 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=51.9
Q ss_pred HHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 82 YDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 82 y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
...+|..+|. .+|.|+..+++.++... ..+.+.+..+|+..|.+++|.|+++||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999 89999999999999875 5789999999999999999999999998653
No 26
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.23 E-value=5.5e-06 Score=62.60 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
+..+....-.|..+|. +||+||.+|++.++ ......-+.++.+.+|.|+||+|+++||+.++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4456777888999999 99999999999987 44557888999999999999999999999877
No 27
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.18 E-value=1.2e-05 Score=57.37 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCC---CCCeeeHHHHHHHHHhc---CCC----HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP---VDGKVTGANAKAEMVKS---KLP----NSVLGKIWKLSDVDKDGFLDADEFALAMHLIQV 144 (172)
Q Consensus 79 ~~~y~~iF~~lD~---~dG~Isg~e~k~~~~~S---~Lp----~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~ 144 (172)
......+|.+++. .+|+|+.++++.+|.+. .++ .+.+.+||+..|.|++|.|+++||+..|.-+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3566788999986 36899999999999742 244 899999999999999999999999988876543
No 28
>PTZ00183 centrin; Provisional
Probab=98.17 E-value=9.1e-06 Score=61.50 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+..++.+|..+|+ ++|+|+..+++.++...+ ++.+.+..+....|.+++|.|+++||..+|.
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3568899999999 899999999999998765 8999999999999999999999999987763
No 29
>KOG0041|consensus
Probab=98.10 E-value=8.8e-06 Score=67.28 Aligned_cols=73 Identities=26% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCCChhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHH--HHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 71 PDWIVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSV--LGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 71 ~~W~~~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~--L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
..|...++...|..+|.++|. .||+|+..++|-.|.+.|.|.+- |..+++.+|-|.||+|++.||++.-+...
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 457777778899999999999 99999999999999999999775 56899999999999999999998777654
No 30
>PTZ00184 calmodulin; Provisional
Probab=98.05 E-value=2.5e-05 Score=58.17 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
...+..+|..+|. ++|+|+..+++.++...+ ++...+..|.+..|.+++|.|+++||+.+|
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 4578899999999 899999999999998754 789999999999999999999999998765
No 31
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.99 E-value=4.6e-05 Score=55.46 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHHh-------cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q psy11746 80 HKYDSIFSSLNPVDGKVTGANAKAEMVK-------SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145 (172)
Q Consensus 80 ~~y~~iF~~lD~~dG~Isg~e~k~~~~~-------S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~ 145 (172)
...-.+|.++....|.+|..+++.++.+ ..-....+.+|++..|.|+||.+|+.||+..+.-+.++
T Consensus 8 ~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 8 EKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4566789998876789999999999864 34578999999999999999999999999888777665
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=97.87 E-value=6.5e-05 Score=51.63 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=52.4
Q ss_pred HHHhhcCC-CCCeeeHHHHHHHHHhc---CCCHHHHHHHHHhhCCCCC-CccCHHHHHHHHHH
Q psy11746 84 SIFSSLNP-VDGKVTGANAKAEMVKS---KLPNSVLGKIWKLSDVDKD-GFLDADEFALAMHL 141 (172)
Q Consensus 84 ~iF~~lD~-~dG~Isg~e~k~~~~~S---~Lp~~~L~~IW~LaD~d~d-G~Ld~~EF~lAmhL 141 (172)
..|+.+|+ +.|.|.-..++.+|+.- +-+++.|..+.+..|.++. |.++++.|+.+|.-
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46999999 99999999999999873 4578999999999999998 99999999999963
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.84 E-value=8.3e-05 Score=59.28 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~--S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
.++.+.|++.|..+|+ ++|.|+..++..+|+. .+.+++.+.+|.+..|. +.|.+++.||+.+|--..
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5677999999999999 9999999999999986 56899999999999999 889999999999986554
No 34
>KOG0034|consensus
Probab=97.75 E-value=0.00014 Score=59.30 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh---cCCC--HHH----HHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK---SKLP--NSV----LGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~---S~Lp--~~~----L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
+.+.+=+|..+|. ++|+|+.++++.++.. .+.+ .+. +.++...+|.|+||+|+++||+-++.-.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4567778999999 9999999999998876 4555 444 4566789999999999999999987644
No 35
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.57 E-value=8.3e-05 Score=42.93 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 114 VLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 114 ~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
++.++.+..|.|+||+|+++||..+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 467889999999999999999998875
No 36
>KOG0028|consensus
Probab=97.42 E-value=0.00065 Score=54.35 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 78 DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 78 e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
.+......|..+|- .+|+||...++.+.... +|.++.|..+..-||.|+||-++.+||...|.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 46778888999988 99999999999999885 59999999999999999999999999987764
No 37
>KOG0037|consensus
Probab=97.34 E-value=0.00079 Score=56.06 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
...|+++|..+|+ ++|.|+..|++..|...| |+.+.+..|.+-.|....|.|++++|+.++--+.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 5679999999999 999999999999999865 9999999999999988899999999988765444
No 38
>KOG0044|consensus
Probab=97.25 E-value=0.00079 Score=55.18 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh----cC---------CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK----SK---------LPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~----S~---------Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+++..|. |..+|. ++|+|+..+...++.. .+ -+.+...+|++..|.|+||.|+.+||.-+..
T Consensus 99 eekl~w~--F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 99 EEKLKWA--FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHhhhh--heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4455555 999999 9999999998776653 22 3688899999999999999999999987764
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=97.19 E-value=0.0016 Score=61.93 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
.+....+++|..+|. ++|.|+.+++..++...+ .+.+.+.++.+..|.|++|+|+.+||.-+|..
T Consensus 176 ~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 176 TERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 344568899999998 899999999999888644 78889999999999999999999999877665
No 40
>KOG0044|consensus
Probab=97.08 E-value=0.0023 Score=52.46 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCCCCC
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIP 152 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~--S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G~~LP 152 (172)
...-+.+|+.+|. ++|.|+..+....+.. .|-..+-|.=..++.|.|+||+|+++|++-.+.-|.........|
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 4455667999999 9999999997666653 477788888777999999999999999999998888877665555
No 41
>KOG0377|consensus
Probab=97.08 E-value=0.0019 Score=59.04 Aligned_cols=67 Identities=18% Similarity=0.388 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHH---h---cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMV---K---SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~---~---S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~ 145 (172)
+.....||+.+|. ++|.||-+|.+.... + -.++.+.+.++-+..|.|+||.+|..||.-|-+|+...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 5667889999999 999999999886553 2 34889999999999999999999999999999999874
No 42
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.05 E-value=0.0015 Score=58.69 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
+..++.+|..+|. ++|+|+.+++.. ...+++..|.|+||.++++||..++.-+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4566788999999 999999998742 57899999999999999999999886543
No 43
>KOG0046|consensus
Probab=96.94 E-value=0.0037 Score=58.08 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=64.2
Q ss_pred CCCCC----hhhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCC-----HHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 71 PDWIV----NKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLP-----NSVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 71 ~~W~~----~~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp-----~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
..|.. .+|.....+-|.++|.++|+|+-.++...|.+++++ .+.++.+..-++.|.+|+++++||+-+++=
T Consensus 6 ~~~~~~~~tq~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 6 DPWLQSQLTQEELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred chhhcccccHHHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45653 567788999999999999999999999999998765 689999999999999999999999986665
Q ss_pred HHHH
Q psy11746 142 IQVK 145 (172)
Q Consensus 142 I~~~ 145 (172)
+..+
T Consensus 86 l~s~ 89 (627)
T KOG0046|consen 86 LKSK 89 (627)
T ss_pred hhhh
Confidence 5433
No 44
>KOG0031|consensus
Probab=96.89 E-value=0.005 Score=49.16 Aligned_cols=62 Identities=13% Similarity=0.317 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
..-....|..+|+ +.|+|..+.+|++|..- +++.+++.++|+.+-.|..|.+|+.+|+-++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4567788999999 99999999999999874 59999999999999999999999999987664
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=96.81 E-value=0.0032 Score=59.94 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=54.3
Q ss_pred CCCCC--ChhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCC---CHHH---HHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 70 EPDWI--VNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKL---PNSV---LGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 70 ~~~W~--~~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~L---p~~~---L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+.+|. +.++...+.+.|+.+|+ ++|++ +..++...+. +... +.++.+..|.|++|.|+++||+.+|.
T Consensus 131 e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 131 ELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred eecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 34554 36778889999999999 89997 6666766662 3333 78999999999999999999998886
Q ss_pred H
Q psy11746 141 L 141 (172)
Q Consensus 141 L 141 (172)
-
T Consensus 207 ~ 207 (644)
T PLN02964 207 A 207 (644)
T ss_pred H
Confidence 3
No 46
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.78 E-value=0.0026 Score=36.56 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=14.5
Q ss_pred HHHHHhhcCC-CCCeeeHHHHHHHHH
Q psy11746 82 YDSIFSSLNP-VDGKVTGANAKAEMV 106 (172)
Q Consensus 82 y~~iF~~lD~-~dG~Isg~e~k~~~~ 106 (172)
++++|+.+|. ++|+|+.++++.++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4556666666 566666666666655
No 47
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.63 E-value=0.0084 Score=39.22 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=38.9
Q ss_pred eeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 95 KVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 95 ~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
++|..|++.+++.-+ ++++-...+.+.+|.+++|+|+.+||....+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 578999999999865 67889999999999999999999999876654
No 48
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.62 E-value=0.0023 Score=36.76 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 114 VLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 114 ~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
.+.++++..|.|++|+|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999998876
No 49
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.60 E-value=0.0023 Score=35.58 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHH
Q psy11746 115 LGKIWKLSDVDKDGFLDADEFALA 138 (172)
Q Consensus 115 L~~IW~LaD~d~dG~Ld~~EF~lA 138 (172)
|.+..+.+|.|+||.|+.+||...
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345667777777777777777653
No 50
>KOG0028|consensus
Probab=96.59 E-value=0.0083 Score=48.10 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+..+..-+..|+.+++ ++|+|++.+++..++..| .+.+.+.++..-.|.++.|.|++++|...|-
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 4455666777777777 777777777776666544 4466666666666666677777777766554
No 51
>KOG4223|consensus
Probab=96.52 E-value=0.0033 Score=55.06 Aligned_cols=64 Identities=27% Similarity=0.475 Sum_probs=52.2
Q ss_pred CCCCCCChhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHH
Q psy11746 69 GEPDWIVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFA 136 (172)
Q Consensus 69 ~~~~W~~~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~ 136 (172)
.+++|+.++ ++ +.|...|. +||++++++++..+.=+ .........+.--+|.|+||+|+++|-+
T Consensus 234 ~epeWv~~E-re---~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 234 EEPEWVLTE-RE---QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred CCccccccc-HH---HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHh
Confidence 358999843 22 55666788 99999999999888754 4568889999999999999999999964
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.47 E-value=0.0054 Score=35.24 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.7
Q ss_pred HHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 82 YDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 82 y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
.+++|+.+|+ ++|+|+.+|++.+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999 9999999999999874
No 53
>KOG0036|consensus
Probab=96.46 E-value=0.012 Score=53.29 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCC---HHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLP---NSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp---~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+...+|+.+|+.+|. ++|.|+-.++...+.+.+.| .+....|.+..|.|+||.+|+.||--.+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 335789999999999 99999999999988876544 78888999999999999999999976654
No 54
>KOG0030|consensus
Probab=96.45 E-value=0.01 Score=46.58 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCC--CHHHHHHHHHhhCCC--CCCccCHHHHHHHHHHHHHHh
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKL--PNSVLGKIWKLSDVD--KDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~L--p~~~L~~IW~LaD~d--~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
++....++++|..+|. +||+|++.++-.+|+..|. ++..+.+...-.+.+ +--+|++++|+-.+.-|....
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 4556899999999999 9999999999999998775 477777776666555 337899999998776665443
No 55
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.28 E-value=0.0024 Score=47.89 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q psy11746 78 DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFAL 137 (172)
Q Consensus 78 e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~l 137 (172)
.+....=.|..||. +||.|+..|++.+.....-+..=+....+-+|.|+||.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34445556999999 9999999999998765555666788999999999999999999874
No 56
>KOG0037|consensus
Probab=95.94 E-value=0.043 Score=45.86 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh---cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK---SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~---S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~ 146 (172)
-.....+|...|. ..|+|+.+|+...+.. +....+..+-|..+.|.+++|++++.||...-.-|+.=+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr 127 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWR 127 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Confidence 4567788999999 8999999999999984 679999999999999999999999999998877777544
No 57
>KOG0036|consensus
Probab=95.88 E-value=0.019 Score=52.16 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
.....+...+|..+|. .||.|+.+|+.+.+++. +|+++.+.+|.+..|.|+++.|+.+||--.+-|.
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 4445667788999999 99999999999999986 4889999999999999999999999997766554
No 58
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.47 E-value=0.013 Score=38.39 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 115 L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
|+++|+..|.|++|+|+.+||..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 78999999999999999999999887654
No 59
>KOG0030|consensus
Probab=95.43 E-value=0.061 Score=42.34 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHH
Q psy11746 80 HKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALA 138 (172)
Q Consensus 80 ~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lA 138 (172)
+.|-+-...+|+ ++|.|.++++|.+|... +|+.+.+.++..=. .|.+|.++++.|+-.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 345555677899 99999999999999985 59999999886432 356799999999864
No 60
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.20 E-value=0.034 Score=30.75 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred HHHHhhcCC-CCCeeeHHHHHHHH
Q psy11746 83 DSIFSSLNP-VDGKVTGANAKAEM 105 (172)
Q Consensus 83 ~~iF~~lD~-~dG~Isg~e~k~~~ 105 (172)
+++|..+|. ++|+||.+|++.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568999999 99999999998853
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.19 E-value=0.027 Score=29.36 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 115 LGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 115 L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
+.++++.+|.+++|.|++.||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56788888898889999998887664
No 62
>KOG0038|consensus
Probab=94.88 E-value=0.051 Score=43.36 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHhhcCC-CCCeeeHHHHHHHHH---hcCCCHHHHH----HHHHhhCCCCCCccCHHHHHH
Q psy11746 85 IFSSLNP-VDGKVTGANAKAEMV---KSKLPNSVLG----KIWKLSDVDKDGFLDADEFAL 137 (172)
Q Consensus 85 iF~~lD~-~dG~Isg~e~k~~~~---~S~Lp~~~L~----~IW~LaD~d~dG~Ld~~EF~l 137 (172)
.|..+|- +|++|..+++...+. +.+|+.+.+. +|...||.|+||+|++.||--
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~ 173 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEH 173 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 4777787 899999998877665 4789987765 556889999999999999854
No 63
>KOG4223|consensus
Probab=94.69 E-value=0.06 Score=47.34 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
+.+.+...+|.++|. ++|.|+-.+++..++.+ +.-.....+-|...|.|+||.++.+|+..+++-
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 456889999999998 99999999999998875 456777778888999999999999999888764
No 64
>KOG0040|consensus
Probab=94.68 E-value=0.087 Score=54.44 Aligned_cols=64 Identities=17% Similarity=0.428 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--C-------CHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--L-------PNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--L-------p~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
.+.-..|.-+|+.+|. .+|+++-...+.+++..| | |...+..|..++|++++|+++..+|+..|
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 4445789999999999 999999999999998743 4 45689999999999999999999998877
No 65
>KOG0031|consensus
Probab=94.67 E-value=0.21 Score=40.06 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCC
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK--LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGY 149 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~--Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G~ 149 (172)
+...+.+++.|..+|. +||.|..++++..|.+.| .+++.|..+.+-+ .|-|++.-| +-|..-++.|-
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~F---LTmfGekL~gt 97 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVF---LTMFGEKLNGT 97 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHH---HHHHHHHhcCC
Confidence 5667899999999999 999999999999998855 7899999998865 478885544 44555555553
No 66
>KOG0034|consensus
Probab=94.58 E-value=0.13 Score=41.83 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=42.9
Q ss_pred HHHHHhhcCC-CCCe-eeHHHHHHHHHh---cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 82 YDSIFSSLNP-VDGK-VTGANAKAEMVK---SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 82 y~~iF~~lD~-~dG~-Isg~e~k~~~~~---S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
-..||+.+++ ++|. |+..+....+.- .....+.++=..++.|.+++|.|+++|+..+++..-
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 3455666666 5555 777776666653 234445777888889999999999998888777553
No 67
>KOG2643|consensus
Probab=94.31 E-value=0.023 Score=51.85 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q psy11746 92 VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145 (172)
Q Consensus 92 ~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~ 145 (172)
.+|.||..+-.=++.-...|....+--.++.|.|+||.||++||...+.||...
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ 265 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQ 265 (489)
T ss_pred CCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhc
Confidence 579999999887777778889999999999999999999999999999998754
No 68
>KOG4251|consensus
Probab=93.58 E-value=0.067 Score=46.04 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh-c----CCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK-S----KLPNSVLGKIWKLSDVDKDGFLDADEFAL 137 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~-S----~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~l 137 (172)
+.+.+...+|.+.|. .+|+||..+++..+++ . .-..+.-.--++.+|+|+||.+.-+||-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 446788999999999 8999999999876654 1 22334444567899999999999999954
No 69
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.84 E-value=0.83 Score=35.81 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=51.4
Q ss_pred HHHHhhc----CCCCCeeeHHHHHHHHHhcC-----CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 83 DSIFSSL----NPVDGKVTGANAKAEMVKSK-----LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 83 ~~iF~~l----D~~dG~Isg~e~k~~~~~S~-----Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
+++|..+ ......+++.....+++.++ ++...+.-|+.-+-..+...|++++|..||.+|......
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 4566666 23667899999999998865 589999999998776666789999999999999887654
No 70
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=92.19 E-value=0.26 Score=29.97 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 115 LGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 115 L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
+..+++..|.+++|.|+++||..++...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 5678999999999999999999988754
No 71
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.71 E-value=0.33 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 82 YDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 82 y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
++.+|..+|. ++|.|+..+++.++.+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4678999999 8899999999988764
No 72
>KOG0377|consensus
Probab=91.69 E-value=0.95 Score=41.95 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=53.4
Q ss_pred HHHHHHhhcCC-CCCeeeHHHHHHHHHh---cCCC---------------------------------------------
Q psy11746 81 KYDSIFSSLNP-VDGKVTGANAKAEMVK---SKLP--------------------------------------------- 111 (172)
Q Consensus 81 ~y~~iF~~lD~-~dG~Isg~e~k~~~~~---S~Lp--------------------------------------------- 111 (172)
....-|...|+ ..|+|+-.....++.+ .+||
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 34556889999 8999999887776654 2232
Q ss_pred -HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 112 -NSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 112 -~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
.+.|..|++..|.|+.|.++.+||..|..|...-.+|
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~ 582 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG 582 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC
Confidence 2456789999999999999999999999998766554
No 73
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.49 E-value=0.43 Score=32.90 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHh----cCCCHHHHHHHHHhhCCC----CCCccCHHHHHHHH
Q psy11746 82 YDSIFSSLNPVDGKVTGANAKAEMVK----SKLPNSVLGKIWKLSDVD----KDGFLDADEFALAM 139 (172)
Q Consensus 82 y~~iF~~lD~~dG~Isg~e~k~~~~~----S~Lp~~~L~~IW~LaD~d----~dG~Ld~~EF~lAm 139 (172)
.+.+|.++..+.+.||.++++.+|.. ..++.+.+.+|......+ ..+.|+.++|...|
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 35789999667899999999999975 357888888888776543 46999999998866
No 74
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=89.80 E-value=0.65 Score=29.12 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
....+.+|+.+|+ ++|+|+..+....|.+
T Consensus 24 ~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 24 EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4558999999999 9999999999998863
No 75
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=88.28 E-value=0.93 Score=29.62 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
-+..+-..+|..+|+ ++|.+.++|...++..
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 345667789999999 9999999999999864
No 76
>KOG2643|consensus
Probab=85.87 E-value=0.4 Score=44.01 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=42.4
Q ss_pred CCeeeHHHHHHHHHh---cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCCCCCC
Q psy11746 93 DGKVTGANAKAEMVK---SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPT 153 (172)
Q Consensus 93 dG~Isg~e~k~~~~~---S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G~~LP~ 153 (172)
++-|+..+.+.+-.. -.|++.++.-|..+.|.|+||.|+.+||+..|+-= ...|-++|.
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R--mhrgl~~p~ 463 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR--MHRGLELPK 463 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH--hhccccCCc
Confidence 345555555544433 24777888889999999999999999999998743 234666665
No 77
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=84.47 E-value=1.5 Score=30.34 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCC--CCCCccCHHHHHHHHHH
Q psy11746 113 SVLGKIWKLSDV--DKDGFLDADEFALAMHL 141 (172)
Q Consensus 113 ~~L~~IW~LaD~--d~dG~Ld~~EF~lAmhL 141 (172)
..+.+++...|. |++|.|+.+||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 467888999999 89999999999998864
No 78
>KOG3555|consensus
Probab=82.98 E-value=1.6 Score=39.24 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=45.2
Q ss_pred HHhhcCC-CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 85 IFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 85 iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
+|++||. .||+++..|++.+-. .-...=++-..+.+|..+||.|+-.|++-.-
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~l--dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIEL--DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhccccccccccCHHHhhhhhc--cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 4999999 899999999998864 4456678889999999999999999998653
No 79
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=81.49 E-value=2.2 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 113 SVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 113 ~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
..+.++....|.|++|.|+.+|+..+|..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34667778999999999999999999864
No 80
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=80.85 E-value=2.3 Score=27.15 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.3
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 117 KIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 117 ~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
++.+..|.|++|.|+.+|+..++.-
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5667889999999999999988753
No 81
>KOG4065|consensus
Probab=79.37 E-value=3.1 Score=32.03 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHhhcCC-CCCeeeHHHHHHHHH------hcC-----CC-HHHH----HHHHHhhCCCCCCccCHHHHHHH
Q psy11746 85 IFSSLNP-VDGKVTGANAKAEMV------KSK-----LP-NSVL----GKIWKLSDVDKDGFLDADEFALA 138 (172)
Q Consensus 85 iF~~lD~-~dG~Isg~e~k~~~~------~S~-----Lp-~~~L----~~IW~LaD~d~dG~Ld~~EF~lA 138 (172)
.|+..|- ++|+|+|-++...+. .+| |+ ...| ..|.+--|.|+||.||+.||+.+
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3777777 899999988866553 233 33 3334 45556678899999999999865
No 82
>KOG0042|consensus
Probab=77.33 E-value=5 Score=38.31 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred ChhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 75 VNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 75 ~~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S--~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
.+++-..|+.-|..+|. +.|+++-..+...|..- +.+.+.++++-+-+|.+..|+...+||...|--+.
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 37788999999999999 99999999999999873 69999999999999999999999999887665543
No 83
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=75.33 E-value=4.3 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHhhC-CCCCC-ccCHHHHHHHHH
Q psy11746 113 SVLGKIWKLSD-VDKDG-FLDADEFALAMH 140 (172)
Q Consensus 113 ~~L~~IW~LaD-~d~dG-~Ld~~EF~lAmh 140 (172)
+.|.++.++.| .|++| .|+..||..+|.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~ 38 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHH
Confidence 56888999997 99999 599999999985
No 84
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.13 E-value=7 Score=31.69 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCC---------CHHHHHHHHHhhCCCCCCccCHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKL---------PNSVLGKIWKLSDVDKDGFLDADE 134 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~L---------p~~~L~~IW~LaD~d~dG~Ld~~E 134 (172)
.++++++|.+.+. ..+.+|..|+.+.++.-.. ..-+-.-+|.|+ .|+||.|.++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~ 159 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKED 159 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHH
Confidence 5789999999998 7789999999999876332 244455677776 56689998875
No 85
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=72.28 E-value=6.2 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.6
Q ss_pred CHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 111 PNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 111 p~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
-...|.-.+...|.|+||.|+.+|...++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 35668888899999999999999998654
No 86
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=69.75 E-value=7 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.7
Q ss_pred HHHHHHHHhhC-CCCCC-ccCHHHHHHHHHH
Q psy11746 113 SVLGKIWKLSD-VDKDG-FLDADEFALAMHL 141 (172)
Q Consensus 113 ~~L~~IW~LaD-~d~dG-~Ld~~EF~lAmhL 141 (172)
..|.++.+..| .|++| +|+.+||..+|.-
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 46778889998 79999 6999999999864
No 87
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=66.87 E-value=8.3 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCC-CC-CCccCHHHHHHHHHH
Q psy11746 113 SVLGKIWKLSDV-DK-DGFLDADEFALAMHL 141 (172)
Q Consensus 113 ~~L~~IW~LaD~-d~-dG~Ld~~EF~lAmhL 141 (172)
..+.++.+..|. |+ +|+|+.+|+..+|.-
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 346677788887 87 699999999998863
No 88
>KOG2562|consensus
Probab=65.95 E-value=5.7 Score=36.85 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=36.3
Q ss_pred HHHHhhcC-----CCCCeeeHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHH
Q psy11746 83 DSIFSSLN-----PVDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADE 134 (172)
Q Consensus 83 ~~iF~~lD-----~~dG~Isg~e~k~~~~~--S~Lp~~~L~~IW~LaD~d~dG~Ld~~E 134 (172)
+.||..+. ..+|+++.++..-+... -+-.+..|.-+.+..|.++||.|+..|
T Consensus 314 dRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 314 DRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred HHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHH
Confidence 56677322 26778887777766553 345677777778888888888888776
No 89
>KOG4578|consensus
Probab=65.18 E-value=6.5 Score=35.27 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=45.7
Q ss_pred HhhcCC-CCCeeeHHHHHH---HHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 86 FSSLNP-VDGKVTGANAKA---EMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 86 F~~lD~-~dG~Isg~e~k~---~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
|..||. .++-|...|.+. ++.+..-+..=.+++.+.+|+|+|-+|+++|+.-.+
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 999999 889999988765 455566788888999999999999999999986544
No 90
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=63.72 E-value=13 Score=27.08 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred CCC-hhhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHH
Q psy11746 73 WIV-NKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWK 120 (172)
Q Consensus 73 W~~-~~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~ 120 (172)
++. +......+.+++.+-..+|.+++.+++....+.|++...|.+++.
T Consensus 41 ~~~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~gltq~~lA~~lg 89 (127)
T TIGR03830 41 LLDPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLGLSQREAAELLG 89 (127)
T ss_pred EEcHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 444 455666777777776689999999999999999999999998874
No 91
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=63.26 E-value=11 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 78 DRHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 78 e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
....+++++..+|. ++|.|+..+...++..
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 45679999999999 8999999999888764
No 92
>KOG4347|consensus
Probab=62.41 E-value=14 Score=35.73 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=50.4
Q ss_pred CCCCChhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHHH
Q psy11746 71 PDWIVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEF 135 (172)
Q Consensus 71 ~~W~~~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~--S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF 135 (172)
..|. ........+|..+|. .+|.|+..++...+.. ++--.+.+.-+++|.|.++| .++.+|-
T Consensus 548 ~pw~--~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 548 LPWA--VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred Cchh--HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4676 445667888999998 8999999999888764 66677888888999999999 8888876
No 93
>KOG4004|consensus
Probab=61.44 E-value=3.8 Score=34.35 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=40.6
Q ss_pred HhhcCC--CCCeeeHHHHHHHHHhcCCC-HHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 86 FSSLNP--VDGKVTGANAKAEMVKSKLP-NSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 86 F~~lD~--~dG~Isg~e~k~~~~~S~Lp-~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
|-.||. .||++|-.++..+- .--+| ..-......-+|.|+||+|..+|+.-...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~-ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR-APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCcccccccccccccc-CCcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 667787 89999998886652 22344 34566788999999999999999976543
No 94
>KOG4251|consensus
Probab=60.60 E-value=23 Score=30.79 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=43.1
Q ss_pred cCC-CCCeeeHHHHHHHHH--hcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q psy11746 89 LNP-VDGKVTGANAKAEMV--KSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHL 141 (172)
Q Consensus 89 lD~-~dG~Isg~e~k~~~~--~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhL 141 (172)
+|. .+|+++..++..+.- ...+.......|..+.|.++|.+|+.+|.+---.|
T Consensus 290 IDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 290 IDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred hhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 455 899999999998863 35577888999999999999999999987654443
No 95
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=60.16 E-value=31 Score=28.37 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh-cCCCCCCCCC
Q psy11746 79 RHKYDSIFSSLNPVDGKVTGANAKAEMVKSKL-PNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI-GGYDIPTELP 156 (172)
Q Consensus 79 ~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~L-p~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~-~G~~LP~~LP 156 (172)
++.|.++...+......+ ..+.-.. ..+ |......+-+....-+...+ .+.+..++++..++ .|.+||.-||
T Consensus 83 ~~~Y~~l~~~~~~il~~l--~~l~~~~--~~l~~~~~~~~l~~~~~~~~~~~~--~~i~~vl~~ls~al~~g~pLP~~lp 156 (229)
T PF10334_consen 83 KETYQRLLELCQNILDLL--SLLSYVS--TRLEPSEWRERLLRRTGWLRPELI--GDIFSVLYMLSSALRTGQPLPPYLP 156 (229)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHH--HHcchhhHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHHhcCCCCCccCC
Confidence 567888877763211111 1111122 334 66666666666655444333 23567778888775 7999999999
Q ss_pred CCCCC
Q psy11746 157 DHLVP 161 (172)
Q Consensus 157 ~~L~p 161 (172)
..|+.
T Consensus 157 ~pl~~ 161 (229)
T PF10334_consen 157 APLVR 161 (229)
T ss_pred cchHH
Confidence 87653
No 96
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=59.78 E-value=14 Score=26.77 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHH
Q psy11746 76 NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMV 106 (172)
Q Consensus 76 ~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~ 106 (172)
..+....+++|..+|. +||.|++.|...++.
T Consensus 44 ~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 44 QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4567889999999999 999999999877664
No 97
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=58.87 E-value=16 Score=19.51 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=13.3
Q ss_pred CCCCCCccCHHHHHHHHH
Q psy11746 123 DVDKDGFLDADEFALAMH 140 (172)
Q Consensus 123 D~d~dG~Ld~~EF~lAmh 140 (172)
|+|+||.++--.|++.-.
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 788999999888776543
No 98
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=58.84 E-value=16 Score=25.59 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
......+|..+|. ++|.|+.++...++..
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 5778899999999 8999999999887764
No 99
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=58.74 E-value=15 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHHHHhhCC-CCCCccCHHHHHHHHHH
Q psy11746 113 SVLGKIWKLSDV-DKDGFLDADEFALAMHL 141 (172)
Q Consensus 113 ~~L~~IW~LaD~-d~dG~Ld~~EF~lAmhL 141 (172)
..|..+.+..|. +++|+|+..||-..|.=
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 467888999999 99999999999887753
No 100
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=58.02 E-value=17 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 77 KDRHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
.+....+++|..+|. ++|.|+..+...++.+
T Consensus 49 ~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 49 KDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 345778999999999 9999999999887754
No 101
>KOG2562|consensus
Probab=57.20 E-value=12 Score=34.73 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=48.1
Q ss_pred HHHHhhcCC-CCCeeeHHHHHHHHHh-cCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q psy11746 83 DSIFSSLNP-VDGKVTGANAKAEMVK-SKLPNSVLGKIWKLSDVDKDGFLDADEFAL 137 (172)
Q Consensus 83 ~~iF~~lD~-~dG~Isg~e~k~~~~~-S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~l 137 (172)
-.+|.+++. .+|.|+.....+..++ .-+..+.+.++.++.+..+.|+|..++|.-
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~ 198 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKP 198 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHH
Confidence 456888888 8999999999888776 568999999999999999999998888765
No 102
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=55.86 E-value=20 Score=24.68 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=37.5
Q ss_pred eeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 95 KVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 95 ~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
.+++..+-..+. ..||.+....|-...+.=+.++|+++||+--|..|.
T Consensus 8 ~~~F~~L~~~l~-~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALS-KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 355555555543 568888888998888888889999999999888775
No 103
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=51.73 E-value=23 Score=24.90 Aligned_cols=29 Identities=10% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK 107 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~ 107 (172)
....+++|..+|. ++|+|+.++...++.+
T Consensus 50 ~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4678889999999 8999999999877754
No 104
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=51.17 E-value=26 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q psy11746 110 LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142 (172)
Q Consensus 110 Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI 142 (172)
.-.+.+..+.+++|.|+||.++.+||.-+-.++
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~~~~~F 363 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLGSDAVF 363 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 447888999999999999999999996433333
No 105
>KOG0751|consensus
Probab=48.42 E-value=21 Score=33.87 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCC--------HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q psy11746 78 DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLP--------NSVLGKIWKLSDVDKDGFLDADEFALAMHLIQV 144 (172)
Q Consensus 78 e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp--------~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~ 144 (172)
....|..+|..+|+ ++|.+|.++.+++|.++.+. .+-+.. ..-.++.-.+++.||...+|=...
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~~ 178 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQL 178 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHHH
Confidence 36789999999999 99999999999999986543 333333 333444567899999888876653
No 106
>KOG0751|consensus
Probab=47.95 E-value=53 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=19.9
Q ss_pred CCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHH
Q psy11746 92 VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFA 136 (172)
Q Consensus 92 ~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~ 136 (172)
+||.||..|.+.+=.-.=-|+..-..++.+.|..+.|.+++++|.
T Consensus 87 KDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~ 131 (694)
T KOG0751|consen 87 KDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVA 131 (694)
T ss_pred ccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHH
Confidence 444444444443322222344444444445554444444444443
No 107
>KOG3866|consensus
Probab=47.74 E-value=28 Score=31.20 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=40.6
Q ss_pred HHhhcCC-CCCeeeHHHHHHHHHhc-------CCCHHHH-----------HHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 85 IFSSLNP-VDGKVTGANAKAEMVKS-------KLPNSVL-----------GKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 85 iF~~lD~-~dG~Isg~e~k~~~~~S-------~Lp~~~L-----------~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
.|...|- +||.++-.++-++|.+- +-+.++. ..+++-+|+|+|-.++.+||+.+.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 3555555 89999999999998751 2222222 368899999999999999998653
No 108
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=46.73 E-value=15 Score=28.04 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhhCCCCCCccCHHHHHH
Q psy11746 110 LPNSVLGKIWKLSDVDKDGFLDADEFAL 137 (172)
Q Consensus 110 Lp~~~L~~IW~LaD~d~dG~Ld~~EF~l 137 (172)
|++++..+.|+-.-+|..|+|.+.||+-
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~ 31 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLS 31 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHH
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHH
Confidence 6889999999999999999999999975
No 109
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=46.39 E-value=31 Score=24.14 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=30.2
Q ss_pred CeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCC
Q psy11746 94 GKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDG 128 (172)
Q Consensus 94 G~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG 128 (172)
+..+.++++..|..+|++.+.+..|+++...-+.+
T Consensus 4 ~~pt~ee~kaEL~aAGmS~~aidgi~~i~~~~~~~ 38 (82)
T PF14747_consen 4 PPPTEEEAKAELVAAGMSEKAIDGIVKIAEKFKSQ 38 (82)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 44578999999999999999999999998776554
No 110
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.26 E-value=1.2e+02 Score=21.86 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHHh-------------cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 80 HKYDSIFSSLNPVDGKVTGANAKAEMVK-------------SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 80 ~~y~~iF~~lD~~dG~Isg~e~k~~~~~-------------S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
.+|+-+|..+...+|.++...+..++.. .|-.+..++.....+- ..-.++.++|+--|.
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 6899999999879999999999888864 2336777888887773 445788889987664
No 111
>KOG0041|consensus
Probab=41.90 E-value=27 Score=29.42 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q psy11746 112 NSVLGKIWKLSDVDKDGFLDADEFALAMHLIQV 144 (172)
Q Consensus 112 ~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~ 144 (172)
-.....+++..|.++||+||..|.-.+|.-+..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga 130 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA 130 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCC
Confidence 456778999999999999999999888865543
No 112
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=39.69 E-value=30 Score=24.37 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=21.2
Q ss_pred eHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q psy11746 97 TGANAKAEMVKSKLPNSVLGKIWKLSDVD 125 (172)
Q Consensus 97 sg~e~k~~~~~S~Lp~~~L~~IW~LaD~d 125 (172)
+|+.+..+|.+.|||.++|.+|.+.-+..
T Consensus 9 ~GDtLs~iF~~~gls~~dl~~v~~~~~~~ 37 (85)
T PF04225_consen 9 SGDTLSTIFRRAGLSASDLYAVLEADGEA 37 (85)
T ss_dssp TT--HHHHHHHTT--HHHHHHHHHHGGGT
T ss_pred CCCcHHHHHHHcCCCHHHHHHHHhccCcc
Confidence 56889999999999999999999876543
No 113
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.29 E-value=1.1e+02 Score=26.07 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhhcCC---CCCeeeHHHHH---HHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNP---VDGKVTGANAK---AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~---~dG~Isg~e~k---~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
.+...+..+|..+-. .||.||-.|+. .+|.+.+|+.+.-...-++.+.-+....+.++|+-.+.
T Consensus 50 ~q~~ff~a~~aLl~~vAkADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 50 RQALFFNTTFAVMGHLAKAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFR 119 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 345566777777654 79999998875 45556799988855555555555555688888876653
No 114
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=36.41 E-value=71 Score=22.34 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=9.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHH
Q psy11746 113 SVLGKIWKLSDVDKDGFLDADEF 135 (172)
Q Consensus 113 ~~L~~IW~LaD~d~dG~Ld~~EF 135 (172)
..|.-+|.++-.| |.++..|=
T Consensus 74 ~~l~~L~~vA~AD--G~~~~~E~ 94 (104)
T cd07313 74 ELVEALWEVAYAD--GELDEYEE 94 (104)
T ss_pred HHHHHHHHHHHhc--CCCCHHHH
Confidence 3444445554443 44444443
No 115
>PF14658 EF-hand_9: EF-hand domain
Probab=36.13 E-value=74 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCC-CC-CeeeHHHHHHHHHh
Q psy11746 79 RHKYDSIFSSLNP-VD-GKVTGANAKAEMVK 107 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~d-G~Isg~e~k~~~~~ 107 (172)
....+.+.+.+|| +. |.|+.+....+|++
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3578889999999 54 99999999999875
No 116
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=34.09 E-value=61 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=16.7
Q ss_pred HHHhhcCC--CCCeeeHHHHHHHHHh
Q psy11746 84 SIFSSLNP--VDGKVTGANAKAEMVK 107 (172)
Q Consensus 84 ~iF~~lD~--~dG~Isg~e~k~~~~~ 107 (172)
.+...+.. ..|++++++++.++.+
T Consensus 17 ~~~~ql~Q~~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 17 GALIQLSQMLASGKLRGEEINSLLEA 42 (75)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 33444444 7899999999888754
No 117
>KOG0169|consensus
Probab=33.57 E-value=79 Score=31.15 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~--S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
..-...+|+..|+ .+|.++..++..++.. ..+...-+..+.+.+|..+++++...+|.-.-+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 3456778999999 9999999999998876 568888899999999999999999998876543
No 118
>KOG3555|consensus
Probab=29.58 E-value=36 Score=30.81 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCC-HHHHHHHHH
Q psy11746 80 HKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLP-NSVLGKIWK 120 (172)
Q Consensus 80 ~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp-~~~L~~IW~ 120 (172)
.-.+..|+++|. .||.||..|.--.|.+++.| .+++.+|=+
T Consensus 282 ~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc~~e~~riqk 324 (434)
T KOG3555|consen 282 ACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPCQAELCRIQK 324 (434)
T ss_pred hHHHHHHhhhcccccCccccchhhhhhccCCCccccHHHHHHh
Confidence 345677999999 99999999999999999876 556666654
No 119
>KOG0035|consensus
Probab=28.98 E-value=97 Score=31.18 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCCHH-------HHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 79 RHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNS-------VLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 79 ~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~Lp~~-------~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
...++++|+..+. ..|.++..+.+..++..|.... ...+|.+..|.+.-|.+++.+|.--|
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 5778999999999 6677999999999999876533 34455577777777999999996543
No 120
>KOG2243|consensus
Probab=27.74 E-value=1.1e+02 Score=33.21 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=47.1
Q ss_pred HhhcCC-CCCeeeHHHHHHHHHhc-CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 86 FSSLNP-VDGKVTGANAKAEMVKS-KLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 86 F~~lD~-~dG~Isg~e~k~~~~~S-~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
|..+|| +.|.||..+....|... ....+.+.-+..-+..|.+.++|+++|+--.|
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 667788 89999999998888764 47888999999999999999999999986555
No 121
>KOG4347|consensus
Probab=26.47 E-value=87 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q psy11746 110 LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143 (172)
Q Consensus 110 Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~ 143 (172)
.+..-+.++|.+-|.+.+|.|++.+|+.++-.+.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 4567789999999999999999999998877655
No 122
>KOG3866|consensus
Probab=24.50 E-value=46 Score=29.85 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=24.8
Q ss_pred eHHHHHHHHHhc-CCCHHHH--HHHHHhhCCCCCCccCHHHHH
Q psy11746 97 TGANAKAEMVKS-KLPNSVL--GKIWKLSDVDKDGFLDADEFA 136 (172)
Q Consensus 97 sg~e~k~~~~~S-~Lp~~~L--~~IW~LaD~d~dG~Ld~~EF~ 136 (172)
|.+++++++..| ||..+.. ...+.|.|+|+||.||..|.-
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELE 267 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELE 267 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHH
Confidence 445555555543 4443332 244578899999999977653
No 123
>PRK14136 recX recombination regulator RecX; Provisional
Probab=23.84 E-value=5.1e+02 Score=22.91 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q psy11746 77 KDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140 (172)
Q Consensus 77 ~e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmh 140 (172)
..+..|...++.|...+ -|-.|++.-|.+-+.+.+++.++..-+-. .|+||...|+-..-
T Consensus 160 ~~~~lk~kAL~lLSrRe--RSe~ELr~KL~kkG~~ee~IE~VIerLke--~gYLDDeRFAesyV 219 (309)
T PRK14136 160 PARSLKGRALGYLSRRE--YSRAELARKLAPYADESDSVEPLLDALER--EGWLSDARFAESLV 219 (309)
T ss_pred cHHHHHHHHHHHhhccc--ccHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCcCHHHHHHHHH
Confidence 45677888888886533 37789999999999999999998866544 47999999987644
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=23.44 E-value=2e+02 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=25.2
Q ss_pred CCeeeHHHHHHHHHhcC----CCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q psy11746 93 DGKVTGANAKAEMVKSK----LPNSVLGKIWKLSDVDKDGFLDADEFALAM 139 (172)
Q Consensus 93 dG~Isg~e~k~~~~~S~----Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAm 139 (172)
.|+++..++..+.+..+ .+..++..||.-.-.++ +.|+.++|...+
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL 63 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFL 63 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHH
Confidence 46666666655444332 35666666665553332 456666665443
No 125
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.05 E-value=26 Score=28.82 Aligned_cols=39 Identities=15% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCCCC-hhhHHHHHHHHhhcCC-CCCeeeHHHHHHHHHhcC
Q psy11746 71 PDWIV-NKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSK 109 (172)
Q Consensus 71 ~~W~~-~~e~~~y~~iF~~lD~-~dG~Isg~e~k~~~~~S~ 109 (172)
..|.+ -+.++.|++.|..+|+ .=-..+-+++..+|...|
T Consensus 45 LSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g 85 (188)
T COG2818 45 LSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAG 85 (188)
T ss_pred chHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc
Confidence 67997 7889999999999997 555566666666665544
No 126
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=21.79 E-value=1.4e+02 Score=18.26 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhCC
Q psy11746 101 AKAEMVKSKLPNSVLGKIWKLSDV 124 (172)
Q Consensus 101 ~k~~~~~S~Lp~~~L~~IW~LaD~ 124 (172)
++.+-.+.|+|..+.++|++.++.
T Consensus 12 ~~~L~~~f~ip~~vAk~IV~~C~~ 35 (40)
T PF02022_consen 12 AKALRHKFGIPRLVAKQIVNQCPK 35 (40)
T ss_dssp HHHHHHHHT--HHHHHHHHHHSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHCHH
Confidence 444555789999999999988764
No 127
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.91 E-value=1.3e+02 Score=21.09 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=30.6
Q ss_pred eeeHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q psy11746 95 KVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148 (172)
Q Consensus 95 ~Isg~e~k~~~~~S~Lp~~~L~~IW~LaD~d~dG~Ld~~EF~lAmhLI~~~~~G 148 (172)
.|.....+.+.++.||++.++..|=. +. . +..|=..-|-..=..+.|
T Consensus 8 ~v~~~~wk~~~R~LGlse~~Id~ie~----~~--~-~~~Eq~yqmL~~W~~~~g 54 (80)
T cd08313 8 EVPPRRWKEFVRRLGLSDNEIERVEL----DH--R-RCRDAQYQMLKVWKERGP 54 (80)
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHH----hC--C-ChHHHHHHHHHHHHHhcC
Confidence 36778899999999999999988842 21 2 455544444444444444
No 128
>KOG1707|consensus
Probab=20.74 E-value=72 Score=30.72 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHH
Q psy11746 112 NSVLGKIWKLSDVDKDGFLDADEF 135 (172)
Q Consensus 112 ~~~L~~IW~LaD~d~dG~Ld~~EF 135 (172)
...|.+|.+++|.|.||.|+-.|-
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~El 217 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAEL 217 (625)
T ss_pred HHHHHHHHhhhccccccccchhhh
Confidence 457889999999999999998875
No 129
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.59 E-value=1.7e+02 Score=21.00 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCCHHHHHHHHHh
Q psy11746 80 HKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKL 121 (172)
Q Consensus 80 ~~y~~iF~~lD~~dG~Isg~e~k~~~~~S~Lp~~~L~~IW~L 121 (172)
+..+..|+.+. ..|...+.+.++++.||+..++..|=.-
T Consensus 4 ~~l~~~f~~i~---~~V~~~~Wk~laR~LGLse~~I~~i~~~ 42 (96)
T cd08315 4 ETLRRSFDHFI---KEVPFDSWNRLMRQLGLSENEIDVAKAN 42 (96)
T ss_pred hHHHHHHHHHH---HHCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34555666553 3466789999999999999999988654
No 130
>PLN02222 phosphoinositide phospholipase C 2
Probab=20.38 E-value=3.3e+02 Score=26.11 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhcCCCCCeeeHHHHHHHHHhc----CCCHHHHHHHHHhhC-CCCCCccCHHHHHHHH
Q psy11746 78 DRHKYDSIFSSLNPVDGKVTGANAKAEMVKS----KLPNSVLGKIWKLSD-VDKDGFLDADEFALAM 139 (172)
Q Consensus 78 e~~~y~~iF~~lD~~dG~Isg~e~k~~~~~S----~Lp~~~L~~IW~LaD-~d~dG~Ld~~EF~lAm 139 (172)
.+...+.+|..+.. ++.++.++++.+|... ....+...+|++... ..+.+.++.+.|...|
T Consensus 23 ~~~ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 23 APREIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred CcHHHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 34578888988754 5799999999999873 345667777776532 2346779999998876
No 131
>smart00548 IRO Motif in Iroquois-class homeodomain proteins (only). Unknown function.
Probab=20.32 E-value=18 Score=20.32 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=8.4
Q ss_pred HHHHhhCCCCC
Q psy11746 117 KIWKLSDVDKD 127 (172)
Q Consensus 117 ~IW~LaD~d~d 127 (172)
+||.|+|+-..
T Consensus 7 KIWSLAetAts 17 (26)
T smart00548 7 KIWSLADTATS 17 (26)
T ss_pred ceeeHHHhhhc
Confidence 68999988543
No 132
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=20.29 E-value=1.4e+02 Score=24.29 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHH--------------HHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy11746 112 NSVLGKIWKLSDVDKDGFLDADEF--------------ALAMHLIQVKIGGYDIPTELPDHLVP 161 (172)
Q Consensus 112 ~~~L~~IW~LaD~d~dG~Ld~~EF--------------~lAmhLI~~~~~G~~LP~~LP~~L~p 161 (172)
.++|+|=....|.|+||.|..-|= +++.-+|+....=...|.-+|..++|
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~ 69 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFR 69 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCcee
Confidence 345666666777777777765553 22344444444334556666665554
Done!