RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11746
(172 letters)
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 167 bits (425), Expect = 2e-54
Identities = 83/137 (60%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 29 PMDDEARVAAPVLKGGAFDGVKDMVSPFGYKRGEGIDAGQGEPDWIVNKDRHKYDSIFSS 88
P+ E+ + + V+KGGAFDG + PFG+ GEG G + +W+V KD+ YD IF +
Sbjct: 2 PLGSESLMPSQVVKGGAFDGTMN--GPFGHGYGEGAGEGIDDVEWVVGKDKPTYDEIFYT 59
Query: 89 LNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGG 148
L+PV+GK+TGANAK EMVKSKLPN+VLGKIWKL+DVDKDG LD +EFALA HLI+VK+ G
Sbjct: 60 LSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEG 119
Query: 149 YDIPTELPDHLVPPSKR 165
+++P +LP HLVPPSKR
Sbjct: 120 HELPADLPPHLVPPSKR 136
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 155 bits (392), Expect = 2e-45
Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 10 LQVVDKMLSEDIAHLMQQIPMDDEARVAAPVLKGGAFDGVKDMVSPFGY--KRGEGIDAG 67
L+ +D ML++DIA LM + ++ V A V G G +G +
Sbjct: 386 LEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFEGTRMGPFVERGPDEAIEDGEEGS 445
Query: 68 QGEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKD 127
+ + +W+V KD+ KYD IF +L P DGK++G+ AK MV +KLPNSVLG+IWKLSDVD+D
Sbjct: 446 EDDAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRD 505
Query: 128 GFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKRGDARPEE 172
G LD +EFALA HLI+ K+ G+ +PT LP LVPPSKR E
Sbjct: 506 GMLDDEEFALASHLIEAKLEGHGLPTNLPRRLVPPSKRRQKGSAE 550
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 136 bits (344), Expect = 3e-42
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 51 DMVSPFGYKRGEGIDAGQGEPDW-IVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSK 109
+ G W I ++R K+D F SL P+ G +TG A+ +S
Sbjct: 3 HHHHHHSHVAQFPTPFGGSLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSG 62
Query: 110 LPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
LP VL +IW L+D++ DG +D EF++AM LI++K+ GY +P+ LP +
Sbjct: 63 LPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVA 118
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 133 bits (337), Expect = 2e-41
Identities = 47/103 (45%), Positives = 66/103 (64%)
Query: 68 QGEPDWIVNKDRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKD 127
G P + +D+ KYD+IF SL+PV+G ++G K ++ SKLP +LG++W+LSD+D D
Sbjct: 3 WGSPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHD 62
Query: 128 GFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKRGDARP 170
G LD DEFA+AM L+ + +P LP LVPPSKR
Sbjct: 63 GMLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKRKTWLE 105
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 131 bits (331), Expect = 2e-40
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 65 DAGQGEPDW-IVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLS 122
++ + W I + R Y + F SL P ++G+ AK KSKL L IW+LS
Sbjct: 6 NSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELS 65
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKRGD 167
D D DG L EF A HLI + GY +P LP L P D
Sbjct: 66 DADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQPEFIVTD 110
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 128 bits (323), Expect = 3e-39
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 72 DWIVNK-DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGF 129
+W V + R KY +F+S + + G +TG A+ +++S LP + L IW LSD+D+DG
Sbjct: 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGK 64
Query: 130 LDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
L A+EF LAMHLI V + G +P LP +PPS R
Sbjct: 65 LTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFR 100
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 121 bits (305), Expect = 1e-36
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 73 WIVNK-DRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFL 130
W+V+ ++ KYD IF + +DG V+G + +K+ LP+++L IW L D G L
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKL 61
Query: 131 DADEFALAMHLIQVKI-GGYDIPTELPDHLVPPS 163
D+FALA HLI K+ G D P L ++PPS
Sbjct: 62 SKDQFALAFHLISQKLIKGIDPPHVLTPEMIPPS 95
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 119 bits (300), Expect = 6e-36
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 73 W-IVNKDRHKYDSIFSSLNP-VDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFL 130
W I ++ R Y + F ++ P ++G + G+ AK KSKLP L IW+LSD DKDG L
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGAL 60
Query: 131 DADEFALAMHLIQVKIGGYDIPTELPDHLVP 161
DEF A HL+ + GYD+P +LP+ L+P
Sbjct: 61 TLDEFCAAFHLVVARKNGYDLPEKLPESLMP 91
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 113 bits (285), Expect = 1e-33
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 77 KDRHKYDSIFSSLNPV-DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF 135
Y+ + + G+V +A A + KS LP+ +LGKIW L+D D G L EF
Sbjct: 8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEF 67
Query: 136 ALAMHLIQVKIGGYDIPTELPDHLVPPSKRGD 167
+A+ L+ G ++ VPP + D
Sbjct: 68 FVALRLVACAQNGLEVSLSSLSLAVPPPRFHD 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 8e-05
Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 75/197 (38%)
Query: 15 KMLSEDIAHLMQQIPMDDEARVAAPVLKG--GAFDGVKDMVSPFGY-------KRGEGID 65
+L + + Q +P E P ++D ++ + K I+
Sbjct: 305 SLLLKYLDCRPQDLP--REVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIE 360
Query: 66 AG--QGEPDWIVNKDRHKYD--SIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIW-- 119
+ EP + R +D S+F P + +P +L IW
Sbjct: 361 SSLNVLEPA----EYRKMFDRLSVF----PPS--------------AHIPTILLSLIWFD 398
Query: 120 --------------KLSDVDKDGFLDADEFALAMHLIQVK---------------IGGYD 150
K S V+K E +++ I ++ + Y+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 151 IPTEL-PDHLVPPSKRG 166
IP D L+PP
Sbjct: 455 IPKTFDSDDLIPPYLDQ 471
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 31.4 bits (72), Expect = 0.024
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143
DG V+ KA + K + +L I+K D D +G +D +EFA IQ
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQ 66
Score = 28.3 bits (64), Expect = 0.28
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 114 VLGKIWKLSDVDKDGFLDADEFALAMHLIQVKI 146
+ ++K DV+ DG + +E + +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIK 33
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 33.5 bits (77), Expect = 0.028
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
GK+T + + + +D +KD +D DEF MH
Sbjct: 449 SGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMH 496
Score = 28.9 bits (65), Expect = 0.83
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 100 NAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMHLIQ 143
N K E+ + K + I K D DK+G+++ EF ++ M
Sbjct: 386 NFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQI 430
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 33.1 bits (76), Expect = 0.033
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
+GK++ + L + ++ D + DG +D +EF +
Sbjct: 440 NGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 487
Score = 26.6 bits (59), Expect = 4.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 100 NAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMHLIQV 144
+ + S + I +D D++G++D EF +AM +
Sbjct: 377 GEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSL 422
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 30.5 bits (70), Expect = 0.043
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
DGK++ + + + K ++ DVD +G L+ADEF +
Sbjct: 15 DGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.047
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 4 YHTC--FVLQVVDKMLSEDIAHLMQQIPMDDEARVAAPVLK----G-GAFDGVKDMVSPF 56
Y T L+V+ +SE I + ++P+ E G G G+ +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 57 GYKRGEG---IDAG--QGEPD 72
K G G I AG PD
Sbjct: 520 --KDGTGVRVIVAGTLDINPD 538
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 32.1 bits (73), Expect = 0.050
Identities = 5/48 (10%), Positives = 11/48 (22%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
D + + +P S + + + FA
Sbjct: 123 DNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Score = 28.3 bits (63), Expect = 1.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 120 KLSDVDKDGFLDADEFALAMH 140
D + DG ++ D+F LA+
Sbjct: 20 TFYDCNHDGVIEWDDFELAIK 40
Score = 27.5 bits (61), Expect = 2.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 120 KLSDVDKDGFLDADEFALAMH 140
++D D +D E++
Sbjct: 116 DVNDTSGDNIIDKHEYSTVYM 136
Score = 27.1 bits (60), Expect = 2.3
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 78 DRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFAL 137
+ ++ + + T E + + + K +D ++D + +E+
Sbjct: 31 EWDDFELAIKKICNLHSWPTDGKKHNEARATL--KLIWDGLRKYADENEDEQVTKEEWLK 88
Query: 138 AMH 140
Sbjct: 89 MWA 91
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 32.0 bits (73), Expect = 0.073
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
GK++ S + + + D + DG +D DEF +
Sbjct: 432 SGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479
Score = 27.7 bits (62), Expect = 2.1
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 97 TGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMHLIQV 144
A M+ + + ++ D DK+G+++ EF +AM +
Sbjct: 366 RMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTL 414
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 30.4 bits (69), Expect = 0.077
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 95 KVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
GA+ E + L ++ D ++ G L+ +EF
Sbjct: 15 YFQGADGDGEELAR------LRSVFAACDANRSGRLEREEFRALC 53
Score = 29.6 bits (67), Expect = 0.14
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
G++ +A + ++ + +++ D D+DG + EFA
Sbjct: 41 SGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGF 87
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 31.2 bits (70), Expect = 0.12
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
KIW+ D D G++ A E + + ++ P +L ++
Sbjct: 106 FMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYT 150
Score = 30.8 bits (69), Expect = 0.16
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
+IW+ D D +G+++ E + K+ D T+
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITD 52
Score = 28.9 bits (64), Expect = 0.77
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 118 IWKLSDVDKDGFLDADEFALAMHL 141
+ D++KDG + E AL + L
Sbjct: 245 LLTHCDMNKDGKIQKSELALCLGL 268
Score = 26.6 bits (58), Expect = 4.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
+ K+ D +KDG LD ++ A +
Sbjct: 152 AMMKIFDKNKDGRLDLNDLARIL 174
Score = 25.8 bits (56), Expect = 8.4
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + + + D DG L +E A +
Sbjct: 47 KDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMI 83
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 30.7 bits (70), Expect = 0.17
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
GK+T +++ + ++ + D + DG +D +EF M
Sbjct: 137 SGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMM 183
Score = 25.7 bits (57), Expect = 6.8
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIG 147
L +I++ D + DG LD E + G
Sbjct: 42 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKG 74
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 30.5 bits (69), Expect = 0.18
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
D ++ L ++ + D + DG L +EF +A
Sbjct: 108 DNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155
Score = 29.3 bits (66), Expect = 0.41
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQV 144
L ++ D ++D + DE+ + ++ +
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGMLGL 125
Score = 28.1 bits (63), Expect = 0.96
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLI 142
+ + D DKDG + +F
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERF 35
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 30.6 bits (69), Expect = 0.18
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
DG V K M +P ++ +D DK G L+ E
Sbjct: 142 DGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
Score = 29.4 bits (66), Expect = 0.51
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIG 147
L K + D+D DG ++ DE ++ +
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVN 70
Score = 28.2 bits (63), Expect = 0.98
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 100 NAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
+ + L + + + D D DG +D DE M
Sbjct: 115 RERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMK 155
Score = 27.5 bits (61), Expect = 1.8
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 98 GANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
A + + + + V+ L +++ A
Sbjct: 66 RQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANR 108
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 29.5 bits (67), Expect = 0.19
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
A++ + + K + + D DK GF++ DE L +
Sbjct: 32 AKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQ 69
Score = 26.1 bits (58), Expect = 3.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 123 DVDKDGFLDADEFALAMH 140
D D DG + DE+A +
Sbjct: 91 DSDGDGAIGVDEWAALVK 108
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 29.6 bits (67), Expect = 0.20
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
+ I++ D D+ G+LD DE +
Sbjct: 43 VKDIFRFIDNDQSGYLDGDELKYFLQ 68
Score = 26.5 bits (59), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 123 DVDKDGFLDADEFALAMH 140
D D DG + ADEF +H
Sbjct: 90 DNDGDGKIGADEFQEMVH 107
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.21
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L +I+++ D D+ GF++ DE +
Sbjct: 43 LKEIFRILDNDQSGFIEEDELKYFLQ 68
Score = 27.2 bits (61), Expect = 1.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DG + A+EF +
Sbjct: 90 DHDGDGKIGAEEFQEMV 106
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 30.5 bits (69), Expect = 0.21
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 85 IFSSLNPVDGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
+ S L ++ +G N S+ ++L +++ S V G + +
Sbjct: 92 LASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLA 149
Score = 27.1 bits (60), Expect = 3.0
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMHL 141
GK + + K + K +P L K++ + + D G + A+A L
Sbjct: 136 SGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDL 187
Score = 26.7 bits (59), Expect = 4.9
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 93 DGKVTGANAKAEMVK---SKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
G+++ + + + + + DVD L EF + +
Sbjct: 267 SGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLV 316
Score = 26.7 bits (59), Expect = 4.9
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L ++ D + +G L EF
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFV 215
Score = 26.3 bits (58), Expect = 5.4
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 123 DVDKDGFLDADEFALAM 139
D D+ + E+
Sbjct: 233 DEDESDDVGFSEYVHLG 249
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 30.3 bits (69), Expect = 0.22
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+G ++ + + + +I + D++ G + EF
Sbjct: 53 NGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGC 99
Score = 26.1 bits (58), Expect = 5.2
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDA--------DEFALAM 139
DG ++ ++ + + L N+ + + K G EF M
Sbjct: 122 DGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYM 176
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 30.1 bits (68), Expect = 0.23
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
DG VT A+ + +P + + D D DG + E A
Sbjct: 112 DGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 28.5 bits (64), Expect = 0.77
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 123 DVDKDGFLDADEFALAMH 140
D D +G +D +F+ A
Sbjct: 14 DQDGNGHIDRSDFSGAAK 31
Score = 28.2 bits (63), Expect = 0.95
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L ++D D DG + + A A+
Sbjct: 100 LHAALGVADTDGDGAVTVADTARALT 125
Score = 26.6 bits (59), Expect = 3.6
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 112 NSVLGKIWKLSDVDKDGFLDADEFALAMH 140
++ + ++D D D + +EF
Sbjct: 54 EALWQGLAGIADRDGDQRITREEFVTGAV 82
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 30.3 bits (68), Expect = 0.24
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
DG V + +L + + ++ + D + + +
Sbjct: 119 DGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYY 166
Score = 28.7 bits (64), Expect = 0.67
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
D++ DG + ++F M + G +
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQ 55
Score = 28.3 bits (63), Expect = 0.94
Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 78 DRHKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFAL 137
+ ++ + + V+ M + +D++KD + +E+
Sbjct: 27 QDNDFEDMMTRYKEVNKGSLSDADYKSMQA--SLEDEWRDLKGRADINKDDVVSWEEYLA 84
Query: 138 AMH 140
Sbjct: 85 MWE 87
Score = 27.2 bits (60), Expect = 2.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
+ ++K DV DG +D +EF
Sbjct: 107 IPFLFKGMDVSGDGIVDLEEFQNYCK 132
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 30.2 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 85 IFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
I S+ + + + K P V+ +I+ L D + DG L +EF
Sbjct: 120 IVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174
Score = 26.3 bits (58), Expect = 5.6
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 104 EMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142
++ ++ + +++ D + D +D E+ A++L+
Sbjct: 50 KVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLV 88
Score = 25.5 bits (56), Expect = 8.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
D D++G +D E + I + E
Sbjct: 105 DKDRNGCIDRQELLDIVESIYKLKKACSVEVE 136
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 29.6 bits (67), Expect = 0.34
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 108 SKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
L + + + D + G LD +EF A+
Sbjct: 68 LVLDQAEAEGVCRKWDRNGSGTLDLEEFLRAL 99
Score = 28.1 bits (63), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L + ++ D D LDADEF +
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLA 64
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.9 bits (66), Expect = 0.36
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 86 FSSL--NPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143
F L +P+DG ++ + ++ D+D D ++ DE+A + Q
Sbjct: 161 FGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 220
Query: 144 VKI 146
I
Sbjct: 221 KDI 223
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 29.0 bits (65), Expect = 0.51
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
DG++ A + + + + + D + +G L DE A+
Sbjct: 116 DGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
Score = 27.8 bits (62), Expect = 1.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAM 139
+ I + D + DG ++ADEFA +
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWL 128
Score = 27.4 bits (61), Expect = 1.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIG 147
D D +G L+ +F I G
Sbjct: 17 DFDGNGALERADFEKEAQHIAEAFG 41
Score = 27.0 bits (60), Expect = 2.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 118 IWKLSDVDKDGFLDADEFALAMH 140
+ K + V DG L ++F
Sbjct: 63 LAKEAGVGSDGSLTEEQFIRVTE 85
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 28.4 bits (64), Expect = 0.61
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
+ + S + K++ + D DK GF++ +E L +
Sbjct: 32 STVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLK 69
Score = 26.1 bits (58), Expect = 3.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DG + +EF +
Sbjct: 91 DTDGDGKIGVEEFQSLV 107
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 28.0 bits (63), Expect = 0.65
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 105 MVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
+ K + K++ + D DK GF++ DE +
Sbjct: 33 VGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILK 68
Score = 26.5 bits (59), Expect = 2.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 123 DVDKDGFLDADEFALAMH 140
D D DG + +EF+ +
Sbjct: 90 DKDGDGKIGVEEFSTLVA 107
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 29.1 bits (65), Expect = 0.66
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 117 KIWKLSDVDKDGFLDADEFALAMH 140
K W+ D D GF++ +E +
Sbjct: 107 KTWRKYDTDHSGFIETEELKNFLK 130
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 117 KIWKLSDVDKDGFLDADEFALAMH 140
+IW D D G+L+ E +
Sbjct: 20 EIWLHFDADGSGYLEGKELQNLIQ 43
Score = 27.5 bits (61), Expect = 2.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
K ++L D D +G++D +E +
Sbjct: 193 FNKAFELYDQDGNGYIDENELDALLK 218
Score = 25.6 bits (56), Expect = 9.9
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
KL D + DG L+ E A + + + + +
Sbjct: 154 KLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEF 193
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 28.6 bits (64), Expect = 0.76
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
DG V+ KA + L + + D +K+G + DEF + ++
Sbjct: 116 DGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVN 165
Score = 27.8 bits (62), Expect = 1.3
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
++ + + +E A+
Sbjct: 61 FLRVADQLGLAPGVRISVEEAAVNAT 86
Score = 27.8 bits (62), Expect = 1.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 123 DVDKDGFLDADEFALAMHLI 142
DV DGF+ +++ L I
Sbjct: 24 DVTGDGFISREDYELIAVRI 43
Score = 26.6 bits (59), Expect = 3.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 123 DVDKDGFLDADEFALAM 139
D DKDG++ EF +
Sbjct: 112 DTDKDGYVSLPEFKAFL 128
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 28.9 bits (65), Expect = 0.76
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
GK++ + S + L I + D +KDG +D +EF +
Sbjct: 431 SGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
Score = 28.1 bits (63), Expect = 1.5
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 82 YDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMH 140
D + + + + + + L D+D G ++ EF A A+
Sbjct: 350 RDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAID 409
Query: 141 LIQV 144
+
Sbjct: 410 RTIL 413
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 27.8 bits (62), Expect = 0.76
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 80 HKYDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
HK+ L D +V ++++ + KI K D +DG + F +
Sbjct: 16 HKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 28.7 bits (64), Expect = 0.78
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
KI+KL D ++DG++ DEF
Sbjct: 151 KIFKLMDKNEDGYITLDEF 169
Score = 25.2 bits (55), Expect = 9.6
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
L ++L D++ DG++ DE + + +G E
Sbjct: 101 LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNE 140
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 28.6 bits (64), Expect = 0.89
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
KL D D +G +D +E +Q G + E
Sbjct: 100 KLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPE 134
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
++ D++ DG L +EF M
Sbjct: 139 LVFHKIDINNDGELTLEEFINGM 161
Score = 26.7 bits (59), Expect = 3.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 108 SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143
++ N + +++ D +KDGF+D EF A++LI
Sbjct: 52 NQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIM 87
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 28.6 bits (64), Expect = 0.96
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 104 EMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + S+ + + +D D D + EF +
Sbjct: 145 VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 28.3 bits (63), Expect = 1.00
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
+I+ + D + DG L EF
Sbjct: 151 RIFAMMDKNADGKLTLQEF 169
Score = 26.0 bits (57), Expect = 6.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
L +KL D+D DG++ +E + I +G E
Sbjct: 101 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE 140
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 28.4 bits (63), Expect = 1.0
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 82 YDSIFSSLNPVDGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEF 135
+ + + + +T + K P KIWK + D L EF
Sbjct: 126 KNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEF 179
Score = 28.4 bits (63), Expect = 1.1
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVP 161
L + L DVD +G + +E + I I D+ D P
Sbjct: 109 LEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTP 155
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEF 135
++ I + SD+D+DG ++ EF
Sbjct: 141 MKQLIDNILEESDIDRDGTINLSEF 165
Score = 26.7 bits (59), Expect = 3.8
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
++ D D DG L+ ++ + ++ + + + L+
Sbjct: 105 RIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLI 145
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 28.2 bits (63), Expect = 1.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
++ D +KDG + DEF
Sbjct: 144 VFFQKMDKNKDGIVTLDEF 162
Score = 25.5 bits (56), Expect = 9.3
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPD 157
L + L D++KDG+++ +E + + + G L +
Sbjct: 94 LRWTFNLYDINKDGYINKEEM-MDIVKAIYDMMGKYTYPVLKE 135
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 28.2 bits (63), Expect = 1.2
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEFALAM 139
++ K ++ +D DG +D +E+ +
Sbjct: 164 IEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
Score = 25.6 bits (56), Expect = 8.2
Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
+L D+ + GF++ E + + G ++ + + ++
Sbjct: 129 QLYDLKQQGFIERQEVKQMVVAT-LAESGMNLKDTVIEDII 168
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 27.6 bits (61), Expect = 1.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
K+ D D + LD E + A+ + + G P D L+
Sbjct: 75 KMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELI 115
Score = 27.2 bits (60), Expect = 2.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
+ + D + DG++D EFA ++
Sbjct: 120 GVLRDDDKNNDGYIDYAEFAKSL 142
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.1 bits (60), Expect = 1.5
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + + K+ D ++D +D E+ + +
Sbjct: 43 PSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 27.8 bits (62), Expect = 1.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEFALAM 139
++ K + +D DG +D DE+ +
Sbjct: 153 IEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
Score = 27.8 bits (62), Expect = 1.6
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
KL D+ + GF++ +E + + + + ++ + +V
Sbjct: 118 KLYDLRQTGFIEREELKEMVVAL-LHESELVLSEDMIEVMV 157
Score = 25.5 bits (56), Expect = 9.0
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVK 145
N +I+ + DV ++G ++ EF ++ +
Sbjct: 72 RNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPS 106
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 108 SKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLI 142
S N + ++++ D +KDG++D E+ A+ L+
Sbjct: 47 SPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLV 81
Score = 27.8 bits (62), Expect = 1.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
++ D++ DG L +EF +
Sbjct: 135 MVFDKIDINGDGELSLEEFMEGV 157
Score = 25.9 bits (57), Expect = 6.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLI 142
L +KL DVD +G +D E + I
Sbjct: 90 LRWYFKLYDVDGNGCIDRGELLNIIKAI 117
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 28.0 bits (62), Expect = 1.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
++ D +KDG + DEF
Sbjct: 177 VFFQKMDKNKDGIVTLDEF 195
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/41 (17%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 104 EMVKSKLPN-----SVLGKIWKLSDVDKDGFLDADEFALAM 139
++++++ P+ L +++ D + DG + +EF + +
Sbjct: 33 QLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLV 73
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 27.8 bits (62), Expect = 1.7
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKRGDAR 169
+ G L+ E A+ + G+ I L RG A
Sbjct: 127 ARARSGTLEPHEILPALQQL-----GFYINQRTSLLLHRLFARGMAF 168
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 26.7 bits (59), Expect = 1.9
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
M+ K+ + D + DG + DE+ +
Sbjct: 45 NHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLI 81
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 27.5 bits (61), Expect = 1.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
++ D +KDG + DEF +
Sbjct: 190 TFFQKMDKNKDGVVTIDEFIESC 212
Score = 26.4 bits (58), Expect = 4.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
L + L D++KDG++ +E M I + G L +
Sbjct: 140 LNWAFNLYDINKDGYITKEEMLDIMKAI-YDMMGKCTYPVLKEDAP 184
Score = 26.4 bits (58), Expect = 5.2
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQ 143
+ ++ D D +G + ++F + ++
Sbjct: 100 STTYAHFLFNAFDTDHNGAVSFEDFIKGLSILL 132
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 26.8 bits (60), Expect = 2.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 121 LSDVDKDGFLDADEFALAMHL 141
L V +G + +F + L
Sbjct: 16 LDAVKAEGSFNHKKFFALVGL 36
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
A + + + + K++K D D GF++ +E +
Sbjct: 32 ALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVL 68
Score = 25.6 bits (57), Expect = 4.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DG + DEF +
Sbjct: 91 DKDGDGKIGIDEFETLV 107
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 27.5 bits (61), Expect = 2.0
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 111 PNSVLGKIWKLSDVDKDGFLDADEFALAM 139
++ I + SD+D+DG ++ EF +
Sbjct: 172 MKQLIDNILEESDIDRDGTINLSEFQHVI 200
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 27.5 bits (61), Expect = 2.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
KI++ D ++DG L +EF
Sbjct: 151 KIFRQMDTNRDGKLSLEEF 169
Score = 25.6 bits (56), Expect = 8.1
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
L + + D+D +G++ E + I + E
Sbjct: 101 LKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTP 145
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 27.7 bits (61), Expect = 2.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 117 KIWKLSDVDKDGFLDADEFALAM 139
+ ++ D ++DG + DEF
Sbjct: 217 RFFQKMDRNQDGVVTIDEFLETC 239
Score = 26.2 bits (57), Expect = 6.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
L + L D++KDG + +E M I +G + P D
Sbjct: 167 LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAP 211
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 26.8 bits (59), Expect = 2.2
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + + K+ D ++D +D E+ + +
Sbjct: 55 PSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 27.1 bits (60), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 117 KIWKLSDVDKDGFLDADEF 135
KI+ + D +KDG L +EF
Sbjct: 151 KIFNMMDKNKDGQLTLEEF 169
Score = 25.5 bits (56), Expect = 9.1
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHL 159
L ++L D+D +G + DE + I +G E D
Sbjct: 101 LIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTP 145
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
D + +D +EF A+ K+ + E
Sbjct: 140 DASGNMLVDEEEFKRAVP----KLEAWGAKVE 167
Score = 26.4 bits (58), Expect = 5.4
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 95 KVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYD 150
+V + V+ + S ++ G D EF L L+ I +
Sbjct: 76 EVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEF-LEFRLMLCYIYDFF 130
Score = 25.6 bits (56), Expect = 8.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYD 150
D + G + DEFA +++ G
Sbjct: 177 DKNGTGSVTFDEFAAWASAVKLDADGDP 204
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 26.3 bits (58), Expect = 2.4
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
++S + K+ K D + D +D EF + +
Sbjct: 42 PGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 26.4 bits (58), Expect = 2.6
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + + K+ D ++D +D E+ + +
Sbjct: 46 PSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 26.3 bits (58), Expect = 2.6
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
V K+ L K+ D + D +D E+A+ +
Sbjct: 44 PSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 26.8 bits (60), Expect = 2.8
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTEL 155
L + + D D G++ ++ + G +P
Sbjct: 54 LKSTFLVLDEDGKGYITKEQLKKGLEKD-----GLKLPYNF 89
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 25.9 bits (57), Expect = 2.9
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ ++ V+ K+ + D + DG D EF +
Sbjct: 42 SHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFV 78
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 26.7 bits (60), Expect = 3.0
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
G +T + + + + + ++ + D D DG +D +EF M
Sbjct: 113 SGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMM 159
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 25.7 bits (57), Expect = 3.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 123 DVDKDGFLDADEFALAM 139
D + DG + +EF A
Sbjct: 59 DKNSDGKISKEEFLNAN 75
Score = 24.9 bits (55), Expect = 5.8
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTE 154
D + DG++ A E M + +
Sbjct: 17 DANGDGYVTALELQTFMVTLDAYKALSKDKVK 48
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 26.8 bits (60), Expect = 3.1
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 109 KLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+L + + + D G + D+F
Sbjct: 106 RLSDQFHDILIRKFDRQGRGQIAFDDFIQGC 136
Score = 26.4 bits (59), Expect = 3.5
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 117 KIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
+++ D D G +D +E A+ GY + + D L+
Sbjct: 78 NVFRTYDRDNSGMIDKNELKQALSGF-----GYRLSDQFHDILI 116
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 26.0 bits (58), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 123 DVDKDGFLDADEFALAMH 140
D D DG + DEFA +
Sbjct: 90 DKDGDGMIGVDEFAAMIK 107
Score = 24.8 bits (55), Expect = 9.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
A++ + + K + + D DK GF++ DE L +
Sbjct: 31 AKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQ 68
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 26.7 bits (59), Expect = 3.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 120 KLSDVDKDGFLDADEFALAM 139
D++ +G +D M
Sbjct: 57 MEFDLNNEGEIDLMSLKRMM 76
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 25.9 bits (57), Expect = 3.2
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + + + KI K D + DG +D EF + +
Sbjct: 42 SSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 25.9 bits (57), Expect = 3.7
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 109 KLPNSVLGKIWKLSDVDKDGFLDADEFALAMH 140
L + ++W V+ G L +F
Sbjct: 56 ILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87
Score = 24.7 bits (54), Expect = 8.8
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 123 DVDKDGFLDADEFALAMH 140
D K + +EF +
Sbjct: 34 DTMKTNTISREEFRAICN 51
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 26.7 bits (59), Expect = 3.8
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+G +T KA + + +++ D+D+ G LD DE
Sbjct: 123 NGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQH 171
Score = 25.5 bits (56), Expect = 8.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 120 KLSDVDKDGFLDADEFALAMH 140
+ D D++G + DE+
Sbjct: 116 DIVDKDQNGAITLDEWKAYTK 136
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 25.9 bits (57), Expect = 3.9
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 102 KAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
K E+ ++ S + + K D + D +D E+++ +
Sbjct: 39 KKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 26.4 bits (59), Expect = 3.9
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
G +T + L + + + K D D DG +D EFA M
Sbjct: 96 SGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMM 142
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 26.0 bits (58), Expect = 4.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DG + ADEFA +
Sbjct: 90 DSDHDGKIGADEFAKMV 106
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 26.0 bits (58), Expect = 4.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 123 DVDKDGFLDADEFALAM 139
D D +G +D +EFA
Sbjct: 46 DADGNGEIDQNEFAKFY 62
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 26.0 bits (58), Expect = 4.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 93 DGKVTGANAK---AEMVKSKLP----NSVLGKIWKLSDVDKDGFLDADEFALAM 139
DG ++ MV + L ++ K +D D DG + +EF +
Sbjct: 89 DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 142
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 25.2 bits (56), Expect = 4.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 120 KLSDVDKDGFLDADEFALAM 139
L D +K G +D E +AM
Sbjct: 14 DLFDTNKTGSIDYHELKVAM 33
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 26.2 bits (58), Expect = 4.8
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 123 DVDKDGFLDADEFALAM 139
D+D G LD DE
Sbjct: 159 DLDNAGDLDVDEMTRQH 175
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 25.2 bits (56), Expect = 5.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DGF+D +EF
Sbjct: 48 DTDGDGFIDFNEFISFC 64
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 25.2 bits (56), Expect = 5.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 93 DGKVTGANAKAEMVK--SKLPNSVLGKIWKLSDVDKDGFLDADEF-ALAMH 140
G +T K + + S+L S + + +D+DK G +D EF A +H
Sbjct: 37 SGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVH 87
Score = 24.8 bits (55), Expect = 7.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L +++K+ D D G + DE +
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLK 50
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 26.1 bits (58), Expect = 5.5
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 93 DGKVTGANAKAEMVKS--KLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
DG++ +A ++ S ++ + + D + G L D++
Sbjct: 107 DGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELS 155
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 25.1 bits (55), Expect = 5.8
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 104 EMVKSKLPN----SVLGKIWKLSDVDKDGFLDADEFALAM 139
++++++ P +K D++ DG ++ EF + +
Sbjct: 36 KLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 26.0 bits (58), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 120 KLSDVDKDGFLDADEFALAM 139
L D++ DGFLD E +AM
Sbjct: 30 SLFDMNNDGFLDYHELKVAM 49
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 25.2 bits (55), Expect = 6.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
A +++ VL ++ K D+D DG LD EF +
Sbjct: 46 AAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLI 82
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 25.2 bits (55), Expect = 6.6
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 103 AEMVKSKLPNSVLGKIWKLSDVDKDGFLDADEFALAM 139
+ + S+ ++ KI D +KD +D +EF + +
Sbjct: 43 TDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 25.9 bits (57), Expect = 6.8
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 93 DGKVTGANAK---AEMVKSKL----PNSVLGKIWKLSDVDKDGFLDADEFALAM 139
DGK++ MV ++ ++ + + +D D DG + EF ++
Sbjct: 128 DGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 26.2 bits (58), Expect = 6.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 119 WKLSDVDKDGFLDADEFALAM 139
+ L++V+ GFL AD+ A
Sbjct: 44 FTLTEVEGIGFLTADKLWQAR 64
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 25.0 bits (55), Expect = 7.1
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 120 KLSDVDKDGFLDADEFALAM 139
D++ +G +D +
Sbjct: 39 MEFDLNGNGDIDIMSLKRML 58
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 24.9 bits (55), Expect = 7.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 123 DVDKDGFLDADEFALAM 139
D D DGF+ DEF
Sbjct: 56 DTDGDGFISFDEFTDFA 72
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 25.6 bits (57), Expect = 8.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 115 LGKIWKLSDVDKDGFLDADEFALAMH 140
L I+ DVD G L + E +
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLK 84
Score = 25.2 bits (56), Expect = 9.9
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 93 DGKVTGANAKAEMVKSKLPNSVLGKIWKL----SDVDKDGFLDADEFALAM 139
+GK++ K + + N ++ K D++ DG +D EF L M
Sbjct: 143 NGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMM 193
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 25.4 bits (56), Expect = 8.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 123 DVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
D D G ++ E A+ L+ GY + + +V
Sbjct: 80 DQDGSGTVEHHELRQAIGLM-----GYRLSPQTLTTIV 112
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 25.6 bits (56), Expect = 8.9
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 120 KLSDVDKDGFLDADEFALAMH 140
L D D DG + E M
Sbjct: 319 SLFDKDGDGTITTKELGTVMR 339
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 25.5 bits (56), Expect = 9.3
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 117 KIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
+ + D D+ G +D E A+ + G+ + + + +
Sbjct: 107 QHFISFDTDRSGTVDPQELQKALTTM-----GFRLSPQAVNSIA 145
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 25.5 bits (56), Expect = 9.5
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 117 KIWKLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLV 160
I+K DVD+ G + + E A G+ + L ++
Sbjct: 81 AIYKQFDVDRSGTIGSSELPGAFEAA-----GFHLNEHLYSMII 119
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 24.9 bits (54), Expect = 9.6
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 120 KLSDVDKDGFLDADEFALAMHLIQVKIGGYDIPTELPDHLVPPSKR 165
L D++ DG LD E K+ + + R
Sbjct: 27 ILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLR 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.415
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,791,657
Number of extensions: 168190
Number of successful extensions: 694
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 286
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)