BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1175
(155 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/107 (73%), Positives = 86/107 (80%), Gaps = 2/107 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKP 107
+IDMVKE+ V + +Q +GGRGG NQR R RG A KP
Sbjct: 75 VIDMVKEETVTKNKQSRDQKGGRGGQNQRNRPA--ARGNFGGRANKP 119
>gi|91084013|ref|XP_975325.1| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated
[Tribolium castaneum]
Length = 163
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 27 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 86
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+IDMVKE+ V + R RD +GGRGG NQR R
Sbjct: 87 VIDMVKEEAVVKNRGRDM-KGGRGGQNQRNR 116
>gi|270007999|gb|EFA04447.1| hypothetical protein TcasGA2_TC014750 [Tribolium castaneum]
Length = 130
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 27 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 86
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+IDMVKE+ V + R RD +GGRGG NQR R
Sbjct: 87 VIDMVKEEAVVKNRGRDM-KGGRGGQNQRNR 116
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 87/112 (77%), Gaps = 3/112 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR-GRGGHNMRGMRANNAPKPTLNR 111
+IDMVKE+ ++R R GRGG N R GRGG RG N L+R
Sbjct: 75 VIDMVKEETQVKSRGRGEISKGRGGQNMRSGRGGS--RGAFGNRGRAAPLSR 124
>gi|195434128|ref|XP_002065055.1| GK14878 [Drosophila willistoni]
gi|194161140|gb|EDW76041.1| GK14878 [Drosophila willistoni]
Length = 303
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/95 (73%), Positives = 78/95 (82%), Gaps = 3/95 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQRGRG 92
+IDMVKED ++R R + NRGG NQ R
Sbjct: 75 VIDMVKEDAQAKSRNRGEMNKNRGGNSQQNQNQRA 109
>gi|194761808|ref|XP_001963115.1| GF14101 [Drosophila ananassae]
gi|190616812|gb|EDV32336.1| GF14101 [Drosophila ananassae]
Length = 140
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 79/93 (84%), Gaps = 3/93 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQRG 90
+IDMVKED ++R R + NRGG NQRG
Sbjct: 61 VIDMVKEDAQAKSRNRTEMNKNRGGNSSQNQRG 93
>gi|405977571|gb|EKC42014.1| UPF0632 protein A [Crassostrea gigas]
Length = 697
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/74 (85%), Positives = 72/74 (97%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 21 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECYIRGSTIKYLRIPDE 80
Query: 61 IIDMVKEDQVQRTR 74
+IDMVKE+ +Q+++
Sbjct: 81 VIDMVKEEVIQKSK 94
>gi|195051225|ref|XP_001993055.1| GH13613 [Drosophila grimshawi]
gi|193900114|gb|EDV98980.1| GH13613 [Drosophila grimshawi]
Length = 155
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/95 (73%), Positives = 78/95 (82%), Gaps = 3/95 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQRGRG 92
+IDMVKED ++R R + NRGG NQ R
Sbjct: 75 VIDMVKEDAQAKSRNRAEMNKNRGGNSSQNQNQRA 109
>gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768, partial [Drosophila
yakuba]
Length = 152
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 13 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 72
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQ 88
+IDMVKED ++R R + NRGG NQ
Sbjct: 73 VIDMVKEDAQAKSRNRTEMNKNRGGNASQNQ 103
>gi|25012547|gb|AAN71375.1| RE35747p [Drosophila melanogaster]
Length = 154
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQ 88
+IDMVKED ++R R + NRGG NQ
Sbjct: 75 VIDMVKEDAQAKSRNRTEMNKNRGGNSSQNQ 105
>gi|78706862|ref|NP_001027236.1| CG17768, isoform A [Drosophila melanogaster]
gi|320544912|ref|NP_001188778.1| CG17768, isoform B [Drosophila melanogaster]
gi|45445082|gb|AAF52938.3| CG17768, isoform A [Drosophila melanogaster]
gi|201065957|gb|ACH92388.1| FI07244p [Drosophila melanogaster]
gi|318068412|gb|ADV37028.1| CG17768, isoform B [Drosophila melanogaster]
Length = 154
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQ 88
+IDMVKED ++R R + NRGG NQ
Sbjct: 75 VIDMVKEDAQAKSRNRTEMNKNRGGNSSQNQ 105
>gi|194859892|ref|XP_001969475.1| GG23936 [Drosophila erecta]
gi|190661342|gb|EDV58534.1| GG23936 [Drosophila erecta]
Length = 154
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQ 88
+IDMVKED ++R R + NRGG NQ
Sbjct: 75 VIDMVKEDAQAKSRNRTEMNKNRGGNSSQNQ 105
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQ 88
+IDMVKED ++R R + NRGG NQ
Sbjct: 61 VIDMVKEDAQAKSRNRTEMNKNRGGNASQNQ 91
>gi|195384890|ref|XP_002051145.1| GJ13818 [Drosophila virilis]
gi|194147602|gb|EDW63300.1| GJ13818 [Drosophila virilis]
Length = 140
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 84/108 (77%), Gaps = 7/108 (6%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPEC+IRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECFIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQRGR----GGHNMRGMRA 101
+IDMVKED ++R R + NRGG NQ R G N G+R+
Sbjct: 61 VIDMVKEDAQAKSRNRAEMNKNRGGNSSQNQNQRAPRSGNRNSFGIRS 108
>gi|403303582|ref|XP_003942405.1| PREDICTED: uncharacterized protein LOC101034609 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 161 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 220
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 221 IIDMVKEEVVAKGR 234
>gi|410921860|ref|XP_003974401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Takifugu rubripes]
Length = 147
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 76/88 (86%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 19 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 78
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKED + + R GRGG+ Q
Sbjct: 79 IIDMVKEDVLSKGR-------GRGGAQQ 99
>gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
Length = 144
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 76/88 (86%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKED + + R GRGG+ Q
Sbjct: 75 IIDMVKEDVLSKGR-------GRGGAQQ 95
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 74/85 (87%), Gaps = 7/85 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 188 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 247
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
IIDMVKE+ V + R GRGG
Sbjct: 248 IIDMVKEEVVAKGR-------GRGG 265
>gi|348523129|ref|XP_003449076.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Oreochromis niloticus]
Length = 147
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 76/88 (86%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKE+ V + R GRGG+ Q
Sbjct: 75 IIDMVKEEVVSKGR-------GRGGAQQ 95
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 19 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 78
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 79 IIDMVKEEVVAKGR 92
>gi|354473886|ref|XP_003499163.1| PREDICTED: hypothetical protein LOC100769464 [Cricetulus griseus]
Length = 391
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 268 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 327
Query: 61 IIDMVKEDQVQ 71
IIDMV+E+ +
Sbjct: 328 IIDMVREEAAK 338
>gi|242007513|ref|XP_002424584.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508027|gb|EEB11846.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 126
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 89/114 (78%), Gaps = 7/114 (6%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNI LREVICTSRDGDKFWRMPECYIRGS IKY+RIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDNWMNIILREVICTSRDGDKFWRMPECYIRGSTIKYVRIPDE 60
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR-GRG-GHNMRGMRANNAPKPTLNRN 112
+IDMVKE+ V ++R R + R SNQR GRG G N G R K ++ RN
Sbjct: 61 VIDMVKEEAVLKSRGRGELK-NRSNSNQRGGRGTGRNQFGGRG----KSSITRN 109
>gi|195578187|ref|XP_002078947.1| GD22262 [Drosophila simulans]
gi|194190956|gb|EDX04532.1| GD22262 [Drosophila simulans]
Length = 154
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 75/85 (88%), Gaps = 3/85 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGG 82
+IDMVKED ++R R + NRGG
Sbjct: 75 VIDMVKEDAQAKSRNRTEMNKNRGG 99
>gi|432854576|ref|XP_004067969.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Oryzias
latipes]
Length = 144
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVK++ V + R GRGG+ Q
Sbjct: 75 IIDMVKDEVVSKGR-------GRGGAQQ 95
>gi|209735614|gb|ACI68676.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 150
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 75/88 (85%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKE+ V + R GRGG Q
Sbjct: 75 IIDMVKEEVVSKGR-------GRGGMQQ 95
>gi|209733716|gb|ACI67727.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 147
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 75/88 (85%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKE+ V + R GRGG Q
Sbjct: 75 IIDMVKEEVVSKGR-------GRGGMQQ 95
>gi|41152340|ref|NP_956990.1| U6 snRNA-associated Sm-like protein LSm4 [Danio rerio]
gi|37589787|gb|AAH59435.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|38328316|gb|AAH62285.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
Length = 143
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 75/88 (85%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKE+ V + R GRGG Q
Sbjct: 75 IIDMVKEEVVSKGR-------GRGGMQQ 95
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 75/85 (88%), Gaps = 3/85 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTRQR---DSNRGG 82
+IDMVKED ++R R + NRGG
Sbjct: 61 VIDMVKEDAQAKSRNRTEMNKNRGG 85
>gi|47217413|emb|CAG00773.1| unnamed protein product [Tetraodon nigroviridis]
Length = 131
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 7/88 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IIDMVKE+ + + R GRGG+ Q
Sbjct: 75 IIDMVKEEVLSKGR-------GRGGAQQ 95
>gi|332019235|gb|EGI59745.1| U6 snRNA-associated Sm-like protein LSm4 [Acromyrmex echinatior]
Length = 138
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 85/124 (68%), Gaps = 17/124 (13%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 14 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 73
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR-----------------GRGGHNMRGMRANN 103
+IDMVKED ++R R +G R GRGG G ++ N
Sbjct: 74 VIDMVKEDIQMKSRGRGEMKGRGQNQRGRGGGRGTFGRGGRGPAPLGRGGSTQVGNKSQN 133
Query: 104 APKP 107
P+P
Sbjct: 134 KPRP 137
>gi|195146798|ref|XP_002014371.1| GL19160 [Drosophila persimilis]
gi|194106324|gb|EDW28367.1| GL19160 [Drosophila persimilis]
Length = 151
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 78/97 (80%), Gaps = 3/97 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR---DSNRGGRGGSNQRGRGGH 94
+IDMVKED ++R R + NR + + R G+
Sbjct: 75 VIDMVKEDAQSKSRNRTELNKNRVANSANQRTARSGN 111
>gi|198470479|ref|XP_002133476.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
gi|198145470|gb|EDY72104.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
Length = 137
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 61 VIDMVKEDAQSKSRNR 76
>gi|226372266|gb|ACO51758.1| U6 snRNA-associated Sm-like protein LSm4 [Rana catesbeiana]
Length = 140
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 76/89 (85%), Gaps = 7/89 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
IIDMVKE+ + + R GRGG Q+
Sbjct: 75 IIDMVKEEVMSKGR-------GRGGMQQQ 96
>gi|147902804|ref|NP_001088454.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|54311207|gb|AAH84779.1| LOC495318 protein [Xenopus laevis]
Length = 138
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 76/89 (85%), Gaps = 7/89 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
IIDMVKE+ + + R GRGG Q+
Sbjct: 75 IIDMVKEEVMSKGR-------GRGGMQQQ 96
>gi|45361593|ref|NP_989371.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|39849973|gb|AAH64199.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|52078460|gb|AAH82491.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
Length = 138
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 76/89 (85%), Gaps = 7/89 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
IIDMVKE+ + + R GRGG Q+
Sbjct: 75 IIDMVKEEVMSKGR-------GRGGMQQQ 96
>gi|118790653|ref|XP_318746.3| AGAP009687-PA [Anopheles gambiae str. PEST]
gi|116118049|gb|EAA14138.4| AGAP009687-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTS+DGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDMQSKSRSR 90
>gi|326934546|ref|XP_003213349.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Meleagris
gallopavo]
Length = 174
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 51 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 110
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 111 IIDMVKEEVVSKGR 124
>gi|119605093|gb|EAW84687.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 163
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 39 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 98
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 99 IIDMVKEEVVAKGR 112
>gi|340718599|ref|XP_003397752.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform 1
[Bombus terrestris]
Length = 154
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 30 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 89
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 90 VIDMVKEDVQMKSRGR 105
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Megachile
rotundata]
Length = 158
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 75/88 (85%), Gaps = 2/88 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 34 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 93
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
+IDMVKED ++R R +G G NQ
Sbjct: 94 VIDMVKEDIQMKSRGRGEMKG--RGQNQ 119
>gi|350409693|ref|XP_003488818.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Bombus
impatiens]
gi|380028027|ref|XP_003697713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Apis
florea]
Length = 139
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDVQMKSRGR 90
>gi|328780963|ref|XP_624908.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Apis
mellifera]
Length = 138
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDVQMKSRGR 90
>gi|307195781|gb|EFN77595.1| U6 snRNA-associated Sm-like protein LSm4 [Harpegnathos saltator]
Length = 138
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 85/124 (68%), Gaps = 17/124 (13%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMN+NLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 14 MLVELKNGETYNGHLVSCDNWMNVNLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 73
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR-----------------GRGGHNMRGMRANN 103
+IDMVKED ++R R +G R GRGG G ++ N
Sbjct: 74 VIDMVKEDVQMKSRGRGEIKGRGQSQRGRGGGRGTFGRGGRGPAPLGRGGGTQLGNKSQN 133
Query: 104 APKP 107
P+P
Sbjct: 134 KPRP 137
>gi|157109644|ref|XP_001650762.1| small nuclear ribonucleoprotein sm [Aedes aegypti]
gi|108878946|gb|EAT43171.1| AAEL005355-PA [Aedes aegypti]
Length = 154
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 70/76 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTS+DGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDVQAKSRNR 90
>gi|301753917|ref|XP_002912773.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Ailuropoda melanoleuca]
Length = 152
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>gi|348558677|ref|XP_003465143.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Cavia
porcellus]
Length = 139
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEAVAKGR 88
>gi|307178481|gb|EFN67170.1| U6 snRNA-associated Sm-like protein LSm4 [Camponotus floridanus]
Length = 139
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDIQMKSRGR 90
>gi|395513176|ref|XP_003760805.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Sarcophilus
harrisii]
Length = 152
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 28 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 87
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 88 IIDMVKEEVVSKGR 101
>gi|449279546|gb|EMC87118.1| U6 snRNA-associated Sm-like protein LSm4, partial [Columba livia]
Length = 138
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVSKGR 88
>gi|350535801|ref|NP_001232447.1| U6 snRNA-associated Sm-like protein LSm4 [Taeniopygia guttata]
gi|363743848|ref|XP_418245.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Gallus
gallus]
gi|197129949|gb|ACH46447.1| putative LSM4 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
Length = 138
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVSKGR 88
>gi|387016780|gb|AFJ50509.1| u6 snRNA-associated Sm-like protein LSm4-like [Crotalus
adamanteus]
Length = 139
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVSKGR 88
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 30 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 89
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 90 IIDMVKEEVVAKGR 103
>gi|345488677|ref|XP_003425963.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia
vitripennis]
Length = 138
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 75 VIDMVKEDVQMKSRGR 90
>gi|355703322|gb|EHH29813.1| Glycine-rich protein, partial [Macaca mulatta]
gi|440903986|gb|ELR54561.1| U6 snRNA-associated Sm-like protein LSm4, partial [Bos grunniens
mutus]
Length = 139
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Homo sapiens]
gi|78369240|ref|NP_001030513.1| U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|160837874|ref|NP_001104275.1| LSM4 homolog, U6 small nuclear RNA associated [Canis lupus
familiaris]
gi|386780610|ref|NP_001247502.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|296233291|ref|XP_002761949.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Callithrix
jacchus]
gi|297704123|ref|XP_002828970.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pongo abelii]
gi|338718643|ref|XP_001500651.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Equus
caballus]
gi|397493881|ref|XP_003817824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pan paniscus]
gi|402904782|ref|XP_003915219.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Papio anubis]
gi|410950868|ref|XP_003982124.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Felis catus]
gi|426387786|ref|XP_004060343.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Gorilla gorilla gorilla]
gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName:
Full=Glycine-rich protein; Short=GRP
gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|5919149|gb|AAD56228.1|AF182290_1 U6 snRNA-associated Sm-like protein LSm4 [Homo sapiens]
gi|6563244|gb|AAF17216.1|AF117235_1 glycine-rich protein [Homo sapiens]
gi|9623197|gb|AAF90055.1|AF251218_1 LSm4 autoantigen [Homo sapiens]
gi|5262858|emb|CAB45867.1| Lsm4 protein [Homo sapiens]
gi|12653237|gb|AAH00387.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|13177763|gb|AAH03652.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|18645159|gb|AAH22198.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|23273864|gb|AAH23665.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|73587230|gb|AAI03244.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119605092|gb|EAW84686.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|190690627|gb|ACE87088.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|190691985|gb|ACE87767.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|208966682|dbj|BAG73355.1| LSM4 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296486080|tpg|DAA28193.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|380784377|gb|AFE64064.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Macaca
mulatta]
gi|383408443|gb|AFH27435.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|410214894|gb|JAA04666.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410249724|gb|JAA12829.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410289766|gb|JAA23483.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410328789|gb|JAA33341.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 139
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>gi|355755618|gb|EHH59365.1| hypothetical protein EGM_09452, partial [Macaca fascicularis]
Length = 138
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 14 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 73
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 74 IIDMVKEEVVAKGR 87
>gi|417408054|gb|JAA50600.1| Putative small nuclear ribonucleoprotein snrnp, partial [Desmodus
rotundus]
Length = 142
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 18 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 77
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 78 IIDMVKEEVVAKGR 91
>gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|6692064|emb|CAB65729.1| Lsm4 protein [Mus musculus]
Length = 137
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 74/89 (83%), Gaps = 8/89 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
IIDMV+E+ + GRGG Q+
Sbjct: 75 IIDMVREEAAKGR--------GRGGPQQK 95
>gi|351701223|gb|EHB04142.1| U6 snRNA-associated Sm-like protein LSm4, partial [Heterocephalus
glaber]
Length = 117
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 82/99 (82%), Gaps = 5/99 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLV CD WMNI+L+EVICTSRDGD+FW+MPECYIRGS+IKYLRIPD+
Sbjct: 15 MLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDD 74
Query: 61 IIDMVKED-QVQRTRQR----DSNRGGRGGSNQRGRGGH 94
+ID VKED Q+ + R R D+ RGG + RGRGG+
Sbjct: 75 VIDKVKEDLQLAKMRNRSQSADTGRGGFHRNKARGRGGN 113
>gi|427778567|gb|JAA54735.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 167
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 40 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 99
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKE+ + + R R
Sbjct: 100 VIDMVKEETLIKGRGR 115
>gi|355477275|ref|NP_001239058.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Homo sapiens]
gi|395750752|ref|XP_003779150.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pongo abelii]
gi|397493883|ref|XP_003817825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pan paniscus]
gi|402904784|ref|XP_003915220.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Papio anubis]
gi|426387788|ref|XP_004060344.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Gorilla gorilla gorilla]
gi|431922013|gb|ELK19186.1| U6 snRNA-associated Sm-like protein LSm4 [Pteropus alecto]
Length = 125
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 61 IIDMVKEEVVAKGR 74
>gi|344283091|ref|XP_003413306.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Loxodonta
africana]
Length = 151
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 27 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 86
Query: 61 IIDMVKEDQVQRTR 74
IIDMVK++ V + R
Sbjct: 87 IIDMVKDEVVAKGR 100
>gi|253735672|ref|NP_001156694.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239791415|dbj|BAH72178.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD WMNINLREVICTS+DGD+FWR+PECYIRGSMIKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYIRGSMIKYLRIPDE 74
Query: 61 IIDMVKED-QVQRTRQRDSNRGGRGGSNQR 89
I DMVKED V + R R N+ R R
Sbjct: 75 IFDMVKEDIVVNKARGRTDNQKNRAPRGAR 104
>gi|242247021|ref|NP_001156271.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239790147|dbj|BAH71652.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD WMNINLREVICTS+DGD+FWR+PECYIRGSMIKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYIRGSMIKYLRIPDE 74
Query: 61 IIDMVKED-QVQRTRQRDSNRGGRGGSNQR 89
I DMVKED V + R R N+ R R
Sbjct: 75 IFDMVKEDIVVNKARGRTDNQKNRAPRGAR 104
>gi|346469961|gb|AEO34825.1| hypothetical protein [Amblyomma maculatum]
Length = 142
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKE+ + + R R
Sbjct: 75 VIDMVKEETLVKGRGR 90
>gi|170041265|ref|XP_001848390.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
gi|167864864|gb|EDS28247.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
Length = 156
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 69/75 (92%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNGETYNGHLV+CD WMNINLREVICTS+DGDKFWRMPECYIRGS IKYLRIPDE+
Sbjct: 3 LVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDEV 62
Query: 62 IDMVKEDQVQRTRQR 76
IDMVKED ++R R
Sbjct: 63 IDMVKEDVQAKSRNR 77
>gi|390335655|ref|XP_783129.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 161
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 68/72 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD+WMNINLREVICTSRDGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 42 MLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECYIRGSTIKYLRIPDE 101
Query: 61 IIDMVKEDQVQR 72
+IDMVKE+ V +
Sbjct: 102 VIDMVKEEVVSK 113
>gi|321456471|gb|EFX67578.1| hypothetical protein DAPPUDRAFT_218645 [Daphnia pulex]
Length = 135
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKE+ V + R R
Sbjct: 75 VIDMVKEEVVAKGRGR 90
>gi|149571864|ref|XP_001512156.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like, partial
[Ornithorhynchus anatinus]
Length = 138
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 69/73 (94%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDEI
Sbjct: 15 LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 74
Query: 62 IDMVKEDQVQRTR 74
IDMVKE+ V + R
Sbjct: 75 IDMVKEEVVSKGR 87
>gi|198436639|ref|XP_002128141.1| PREDICTED: similar to GL19160 isoform 1 [Ciona intestinalis]
Length = 127
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 68/72 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGD FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDHFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQR 72
+IDMVKED + +
Sbjct: 75 VIDMVKEDSMSK 86
>gi|427784849|gb|JAA57876.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 142
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKE+ + + R R
Sbjct: 75 VIDMVKEETLIKGRGR 90
>gi|390362890|ref|XP_003730251.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 151
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 68/72 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD+WMNINLREVICTSRDGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 42 MLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECYIRGSTIKYLRIPDE 101
Query: 61 IIDMVKEDQVQR 72
+IDMVKE+ V +
Sbjct: 102 VIDMVKEEVVSK 113
>gi|126345432|ref|XP_001373339.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Monodelphis domestica]
Length = 124
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 69/73 (94%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDEI
Sbjct: 1 LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 60
Query: 62 IDMVKEDQVQRTR 74
IDMVKE+ V + R
Sbjct: 61 IDMVKEEVVSKGR 73
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 5/98 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLV CD WMNI+L+EVICTSRDGD+FW+MPECYIRGS+IKYLRIPD+
Sbjct: 1 MLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDD 60
Query: 61 IIDMVKED-QVQRTRQR----DSNRGGRGGSNQRGRGG 93
+ID VKED Q+ + R R D+ RGG + +GRGG
Sbjct: 61 VIDKVKEDLQLAKMRNRSQSADTGRGGFHRNKAKGRGG 98
>gi|148696909|gb|EDL28856.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 143
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 20 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 79
Query: 61 IIDMVKEDQVQ 71
IIDMV+E+ +
Sbjct: 80 IIDMVREEAAK 90
>gi|157823641|ref|NP_001099543.1| U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus]
gi|159032056|ref|NP_056631.2| U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
gi|12846677|dbj|BAB27261.1| unnamed protein product [Mus musculus]
gi|20073103|gb|AAH26747.1| Lsm4 protein [Mus musculus]
gi|26354156|dbj|BAC40708.1| unnamed protein product [Mus musculus]
gi|74198684|dbj|BAE39816.1| unnamed protein product [Mus musculus]
gi|74228648|dbj|BAE25390.1| unnamed protein product [Mus musculus]
gi|148696910|gb|EDL28857.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149036057|gb|EDL90723.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 138
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQ 71
IIDMV+E+ +
Sbjct: 75 IIDMVREEAAK 85
>gi|281343535|gb|EFB19119.1| hypothetical protein PANDA_000549 [Ailuropoda melanoleuca]
Length = 96
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 69/73 (94%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDEI
Sbjct: 2 LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 61
Query: 62 IDMVKEDQVQRTR 74
IDMVKE+ V + R
Sbjct: 62 IDMVKEEVVAKGR 74
>gi|443711054|gb|ELU05001.1| hypothetical protein CAPTEDRAFT_200433 [Capitella teleta]
Length = 136
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 71/76 (93%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNIN+REVICTSRDGD+FWRMPECY+RGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINMREVICTSRDGDRFWRMPECYVRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
IIDMVKED + + + R
Sbjct: 75 IIDMVKEDNMMKHKGR 90
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 3669 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 3728
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 3729 VIDKVQEETKNRADRK 3744
>gi|449672414|ref|XP_002167952.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Hydra
magnipapillata]
Length = 128
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 71/76 (93%), Gaps = 1/76 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD+WMNINLREVICTSRDGD+FWRM +CYIRGS IKYLRIPDE
Sbjct: 16 MLVELKNGETYNGHLVTCDNWMNINLREVICTSRDGDRFWRMSQCYIRGSTIKYLRIPDE 75
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED +QR +Q+
Sbjct: 76 VIDMVKED-IQRNKQK 90
>gi|344241344|gb|EGV97447.1| U6 snRNA-associated Sm-like protein LSm4 [Cricetulus griseus]
Length = 124
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 1 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 60
Query: 61 IIDMVKEDQVQ 71
IIDMV+E+ +
Sbjct: 61 IIDMVREEAAK 71
>gi|260793240|ref|XP_002591620.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
gi|229276829|gb|EEN47631.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
Length = 126
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 71/78 (91%), Gaps = 2/78 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD+WMNI LR+VICTSRDGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQV--QRTRQR 76
+IDMVKED V QRT+Q+
Sbjct: 75 VIDMVKEDIVSKQRTKQQ 92
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 5/95 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
+ID V+E+ RT +R G R RGG +
Sbjct: 75 VIDKVQEEAKSRT-----DRKPPGVGRARARGGRD 104
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 67/71 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTS DGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSLDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQ 71
IIDMV+E+ +
Sbjct: 75 IIDMVREEAAK 85
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 72/78 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
+ID V+E+ V+R+ ++ +
Sbjct: 75 VIDKVQEETVKRSDRKPT 92
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 68/72 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLREVICTSRDGDKFW++PECY+RGS IKYLRIPDE
Sbjct: 16 MLVELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKFWKIPECYVRGSNIKYLRIPDE 75
Query: 61 IIDMVKEDQVQR 72
+IDMVKE+ Q+
Sbjct: 76 VIDMVKEEVKQQ 87
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 66/74 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD+WMN+ LREVICTSRDGD FWRM ECY+RGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYVRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
+IDMVKE+ R +
Sbjct: 75 VIDMVKEENTARMK 88
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 66/74 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD+WMN+ LREVICTSRDGD FWRM ECY+RGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYVRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
+IDMVKE+ R +
Sbjct: 75 VIDMVKEENTARMK 88
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 10/102 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRD----------SNRGGRGGSNQRGRG 92
+ID V+E++ + R+ + G GG +G G
Sbjct: 75 VIDKVQEEKSRTDRKPPGVGRGRGRGREDAAGAGGRQTKGTG 116
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/101 (63%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGH+V+CD WMN+ L+EVI T+ DGD+F+R+ ECYIRGS IKYLRIPDE
Sbjct: 524 MLVELKNGETYNGHMVSCDTWMNLILKEVIQTNADGDRFFRLSECYIRGSTIKYLRIPDE 583
Query: 61 IIDMVK---EDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
II++VK E QR +RGGRG + RGRG N++G
Sbjct: 584 IINIVKLQNEQNRDNRSQRGISRGGRGINLGRGRGMQNIQG 624
>gi|340376985|ref|XP_003387011.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Amphimedon queenslandica]
Length = 125
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNI L+EVICTSRDGD+FW+MPEC+IRGSMIKYLRIPDE
Sbjct: 17 MLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGDRFWKMPECFIRGSMIKYLRIPDE 76
Query: 61 IIDMVKEDQVQ 71
+ID VKE+ +
Sbjct: 77 VIDKVKEEAFK 87
>gi|363808094|ref|NP_001242473.1| uncharacterized protein LOC100786834 [Glycine max]
gi|255645080|gb|ACU23039.1| unknown [Glycine max]
Length = 138
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 1 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 60
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 61 VIDKVQEETKSRADRK 76
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 69/76 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ RT ++
Sbjct: 75 VIDKVQEETKSRTDRK 90
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 69/75 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQ 75
+ID V+E++ + R+
Sbjct: 75 VIDKVQEEKTRTDRK 89
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 69/75 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQ 75
+ID V+E++ + R+
Sbjct: 75 VIDKVQEEKTRTDRK 89
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 69/75 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQ 75
+ID V+E++ + R+
Sbjct: 75 VIDKVQEEKTRTDRK 89
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R+ ++
Sbjct: 75 VIDKVQEETKSRSDRK 90
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 28 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 87
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 88 VIDKVQEETKNRADRK 103
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 69/75 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQ 75
+ID V+E++ + R+
Sbjct: 75 VIDKVQEEKSRTDRK 89
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 65/68 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKED 68
+ID V+E+
Sbjct: 75 VIDKVQEE 82
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R+ ++
Sbjct: 75 VIDKVQEEIKSRSDRK 90
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKNRADRK 90
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKNRADRK 90
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 65/68 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKED 68
+ID V+E+
Sbjct: 75 VIDKVQEE 82
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 66/72 (91%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQR 72
+ID V+E+ R
Sbjct: 75 VIDKVQEETKSR 86
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 65/68 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKED 68
+ID V+E+
Sbjct: 75 VIDKVQEE 82
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 61 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 120
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 121 VIDKVQEETKNRADRK 136
>gi|391338956|ref|XP_003743819.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 67/68 (98%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSR+GDKFWR+PECY+RG+ I++LRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKFWRIPECYVRGNTIRFLRIPDE 74
Query: 61 IIDMVKED 68
+I+MVKED
Sbjct: 75 VIEMVKED 82
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 66/69 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
+ID V+E++
Sbjct: 75 VIDKVQEEK 83
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 66/76 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECY RG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYXRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWR PECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R+ ++
Sbjct: 75 VIDKVQEETKSRSDRK 90
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 66/76 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVE KNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ + R
Sbjct: 75 VIDKVQEETSKSRSDR 90
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMP+CYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>gi|340383285|ref|XP_003390148.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Amphimedon queenslandica]
Length = 93
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 66/71 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNI L+EVICTSRDG++FW+MPEC+IRGSM KYLRIPDE
Sbjct: 17 MLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGERFWKMPECFIRGSMTKYLRIPDE 76
Query: 61 IIDMVKEDQVQ 71
+ID VKE+ +
Sbjct: 77 VIDKVKEEAFK 87
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG+TYNGHLVNCD WMN+NLREVICTS+DGD+FW+MPECYIRG+ IKY+R+P+E
Sbjct: 17 MLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNE 76
Query: 61 IIDMVKEDQVQRTRQRDSN 79
I+DMV E+ + R R +N
Sbjct: 77 ILDMVNEEDFSK-RDRQAN 94
>gi|328774253|gb|EGF84290.1| hypothetical protein BATDEDRAFT_85018 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%), Gaps = 1/82 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
ML+ELKNG+T+NGHLVNCD +MN+NLREVI TS DG+KFW++PE YIRGS IKYLR+PDE
Sbjct: 15 MLIELKNGDTFNGHLVNCDPYMNVNLREVIRTSADGEKFWKIPEIYIRGSTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
I+D+VKE+Q R RQ D RGG
Sbjct: 75 ILDLVKEEQ-SRPRQNDDRRGG 95
>gi|391339536|ref|XP_003744104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 67/68 (98%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSR+GDKFWR+PECYIRG+ I++LRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKFWRIPECYIRGNTIRFLRIPDE 74
Query: 61 IIDMVKED 68
+I+MVK+D
Sbjct: 75 VIEMVKDD 82
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS DGD+FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
++D VKE+Q R R++NR RGG RGG
Sbjct: 75 LLDQVKEEQ---NRAREANRNSRGGHTGPNRGG 104
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 75/97 (77%), Gaps = 7/97 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS +GDKFW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRG----GSNQRGRGG 93
++D VKE+Q R R++ R RG G+ QRGRG
Sbjct: 75 LLDAVKEEQ---NRAREAGRSARGAHVSGAGQRGRGA 108
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 73/93 (78%), Gaps = 3/93 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHL+NCD++MNI LREV TS DG++FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLINCDNFMNITLREVYQTSADGERFWKLKECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
++D VKE+Q TR R++ R RG GRGG
Sbjct: 75 LLDAVKEEQ---TRAREAGRSARGSHVSGGRGG 104
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 68/78 (87%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGETYNGH+V CD WMN++LREVICTS+DGD+FWR+PE YIRG+ IKYLR+PDE
Sbjct: 15 VLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
+ID VKE+ +R +R +
Sbjct: 75 VIDKVKEENYKRDEKRPA 92
>gi|384489888|gb|EIE81110.1| hypothetical protein RO3G_05815 [Rhizopus delemar RA 99-880]
Length = 129
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 76/111 (68%), Gaps = 25/111 (22%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET+NGHLVNCD+WMN+ LREVI TS +GDKFWR+PECYIRG+ IKYL +P+E
Sbjct: 15 MLVELKSGETFNGHLVNCDNWMNLTLREVIQTSPEGDKFWRLPECYIRGNTIKYLNVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDS------------------------NRGGRGGSN 87
I+DMVKE++ RTRQ + RGGRG SN
Sbjct: 75 IVDMVKEEE-SRTRQSGTRGGRGGRGGGRDGNRGGRGNNRNQTRGGRGASN 124
>gi|340718601|ref|XP_003397753.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
2 [Bombus terrestris]
Length = 148
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 64/76 (84%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLRE DGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 30 MLVELKNGETYNGHLVSCDSWMNINLRE------DGDKFWRMPECYIRGSTIKYLRIPDE 83
Query: 61 IIDMVKEDQVQRTRQR 76
+IDMVKED ++R R
Sbjct: 84 VIDMVKEDVQMKSRGR 99
>gi|324507721|gb|ADY43268.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 130
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNI+LR+ ICTSRDGD+F +MPE Y+RGS IKYLRIPD+
Sbjct: 16 MLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYVRGSTIKYLRIPDD 75
Query: 61 IIDMVKEDQVQRTR--QRDSNRGGRG 84
++++VK D+V+ R Q+D R R
Sbjct: 76 VVELVK-DEVKEVRRQQKDQQRAKRA 100
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%), Gaps = 4/88 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG LVNCD WMN+ LREV+ TS DGDKF R+PE Y+RGS IKYLR+PDE
Sbjct: 75 MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 134
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
I+D+VK+ QV + +NRGGRGG +Q
Sbjct: 135 IVDVVKDQQV----KDQANRGGRGGMHQ 158
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 69/81 (85%), Gaps = 3/81 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR---DGDKFWRMPECYIRGSMIKYLRI 57
MLVELKNGETYNGHLV+CD WMNI+LREVICTS+ DGD+FWRMPECYIRG+ IKYLR+
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIRGNTIKYLRV 74
Query: 58 PDEIIDMVKEDQVQRTRQRDS 78
PDE+ID V+E+ + R+ S
Sbjct: 75 PDEVIDKVQEETKRSDRKPPS 95
>gi|440791795|gb|ELR13033.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 131
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 65/68 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNINLR+VICTSRDG++FWR+P+CYIRG+ IKYL IPDE
Sbjct: 1 MLVELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDE 60
Query: 61 IIDMVKED 68
+IDMV+E+
Sbjct: 61 VIDMVQEN 68
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 74/96 (77%), Gaps = 7/96 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHL+NCD++MNI LREV TS +GD+FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRFWKLKECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRG----GSNQRGRG 92
++D VKE+Q R R++ R RG G+ RGRG
Sbjct: 75 LLDAVKEEQ---NRAREAGRSARGAHVSGAGARGRG 107
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 66/78 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L+ELKNGETYNGH+V CD WMNI+LREVICTS+DGD+FWRMPE YIRG+ IKYLR+PDE
Sbjct: 15 VLIELKNGETYNGHMVQCDTWMNIHLREVICTSKDGDRFWRMPEAYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
++D KE +R +R +
Sbjct: 75 VLDKAKEADFRRDEKRPA 92
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 3/92 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGE +NGHLVNCD++MNI LREV TS DG++FW++ ECYIRGS IKY+R+P+
Sbjct: 15 MLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECYIRGSTIKYIRVPET 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
++D+VKE+Q+ R R++ + RGG N RGRG
Sbjct: 75 LLDVVKEEQL---RAREAGKSQRGGLNDRGRG 103
>gi|392591224|gb|EIW80552.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 127
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 70/80 (87%), Gaps = 3/80 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS DGD+FW++ ECYIRGS IKYLR+PD+
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYIRGSTIKYLRVPDQ 74
Query: 61 IIDMVKEDQVQRTRQRDSNR 80
++D+VKEDQ+ R R++NR
Sbjct: 75 LLDVVKEDQL---RAREANR 91
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 59/61 (96%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 I 61
+
Sbjct: 75 V 75
>gi|396487975|ref|XP_003842766.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
gi|312219343|emb|CBX99287.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
Length = 114
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 70/88 (79%), Gaps = 4/88 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG L+NCD WMN+ LREV+ TS DGDKF R+PE Y+RGS IKYLR+PDE
Sbjct: 1 MLVELKSGETLNGLLINCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 60
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
I+D+VKE Q + +NRGGRGG +Q
Sbjct: 61 IVDVVKEQQA----KDQANRGGRGGMHQ 84
>gi|324523014|gb|ADY48174.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 166
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNI+LR+ ICTSRDGD+F +MPE Y+RGS IKYLRIPD+
Sbjct: 52 MLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYVRGSTIKYLRIPDD 111
Query: 61 IIDMVKEDQVQRTR--QRDSNRGGRG 84
++++VK D+V+ R Q+D R R
Sbjct: 112 VVELVK-DEVKEVRRQQKDQQRAKRA 136
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNG LVNCD WMN++LR+V+CTSRDGDKFW++PECYIRG+ IKYLR+PDE
Sbjct: 1 MLVELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPDE 60
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V ++ V++ R+
Sbjct: 61 VIDKVVDEPVKKERKE 76
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 15/108 (13%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD WMNI+LR+ ICTSRDGD+F +M E Y+RGS IKYLRIPD+
Sbjct: 47 MLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDD 106
Query: 61 IIDMVKEDQVQ-RTRQRDSNRGGRG--------------GSNQRGRGG 93
++++VKE+ + R +Q+D R R S RGRGG
Sbjct: 107 VVELVKEEVKEVRRQQKDQQRAKRNLQGVRGGGQQGRGGVSGARGRGG 154
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNG L +CD WMN++L+EVICTS+DGD+FWRM ECY+RG+ IKY+ +PDE
Sbjct: 673 MLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEECYVRGNTIKYVCVPDE 732
Query: 61 IIDMVKEDQVQRTRQRDS 78
++D V+E+ R QR+S
Sbjct: 733 VLDKVREEMKNRP-QRES 749
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 59/62 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 II 62
+
Sbjct: 75 VF 76
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L+EV+ TS +GDKF+R+ ECY+RG+ IKYLR+PDE
Sbjct: 130 MLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDE 189
Query: 61 IIDMVKEDQVQR 72
IID+VKE Q Q+
Sbjct: 190 IIDLVKETQTQQ 201
>gi|195995525|ref|XP_002107631.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588407|gb|EDV28429.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 96
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 61/61 (100%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD++MNINLREVICTS+DGD+FW+MPECY+RG+MIKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVNCDNFMNINLREVICTSKDGDRFWKMPECYLRGNMIKYLRIPDE 74
Query: 61 I 61
+
Sbjct: 75 V 75
>gi|402581860|gb|EJW75807.1| small nuclear ribonucleoprotein, partial [Wuchereria bancrofti]
Length = 123
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV CD WMNI+LR+ ICTSRDGD+F +M E Y+RGS IKYLRIPD+
Sbjct: 14 MLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDD 73
Query: 61 IIDMVKEDQVQ-RTRQRDSNRGGR 83
++++VKE+ + R +Q+D R R
Sbjct: 74 VVELVKEEVKEVRRQQKDQQRAKR 97
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 64/71 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
ML+ELKNG+TYNG LV+ D WMN+NL EVICTSRDGD+FW++ ECYIRG+ IKYLRIPDE
Sbjct: 15 MLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYIRGNSIKYLRIPDE 74
Query: 61 IIDMVKEDQVQ 71
IID+V+E+++
Sbjct: 75 IIDLVQEEEIS 85
>gi|242207126|ref|XP_002469417.1| predicted protein [Postia placenta Mad-698-R]
gi|220731446|gb|EED85290.1| predicted protein [Postia placenta Mad-698-R]
Length = 106
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 72/94 (76%), Gaps = 7/94 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV T+ DGD+FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRG----GSNQRG 90
++D VKE+Q + R++ R RG G+ RG
Sbjct: 75 LLDAVKEEQ---NKAREAGRSARGAHVSGAGNRG 105
>gi|242212742|ref|XP_002472203.1| predicted protein [Postia placenta Mad-698-R]
gi|220728761|gb|EED82649.1| predicted protein [Postia placenta Mad-698-R]
Length = 96
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 3/85 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV T+ DGD+FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
++D VKE+Q + R++ R RG
Sbjct: 75 LLDAVKEEQ---NKAREAGRSARGA 96
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 6/104 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETYNG LVNCD+WMNINL+ VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 61 IIDMV-KEDQVQRT--RQR-DSNRG-GRG-GSNQRGRGGHNMRG 98
IID+V +E+Q RT +QR DSNRG GRG G RGRG + RG
Sbjct: 75 IIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMN++LREVICTS+DGD+FWRM CY+RG+ IKY+ +PDE
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYVRGNTIKYICVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+I +V+E+ +++++ +
Sbjct: 75 VIGLVQEENLKKSQMK 90
>gi|443922752|gb|ELU42142.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 137
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 67/79 (84%), Gaps = 3/79 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD +MNI LREV TS +GD+FW++ ECYIRGSMIKYLR+PD
Sbjct: 25 MLVELKNGETFNGHLVNCDTFMNITLREVYQTSPEGDRFWKLKECYIRGSMIKYLRVPDA 84
Query: 61 IIDMVKEDQVQRTRQRDSN 79
++D VKE+Q+ R RD+N
Sbjct: 85 LLDNVKEEQL---RARDAN 100
>gi|393905582|gb|EFO18954.2| hypothetical protein LOAG_09541 [Loa loa]
Length = 135
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLV CD WMNI+LR+ ICTSRDGD+F +M E Y+RGS IKYLRIPD+
Sbjct: 16 MLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDD 75
Query: 61 IIDMVKEDQVQ-RTRQRDSNRGGR 83
++++VKE+ + R +Q+D R R
Sbjct: 76 VVELVKEEVKEVRRQQKDQQRAKR 99
>gi|391341871|ref|XP_003745250.1| PREDICTED: uncharacterized protein LOC100904769 [Metaseiulus
occidentalis]
Length = 196
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 62/68 (91%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINL EVIC SR+GDK WR+PECY+R + I++ RIPDE
Sbjct: 95 MLVELKNGETYNGHLVSCDNWMNINLGEVICKSREGDKVWRIPECYVRCNTIRFPRIPDE 154
Query: 61 IIDMVKED 68
+I+MVKED
Sbjct: 155 VIEMVKED 162
>gi|340960256|gb|EGS21437.1| hypothetical protein CTHT_0032950 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 769
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/74 (70%), Positives = 62/74 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IID+VKE Q Q+ R
Sbjct: 75 IIDIVKEQQQQQHR 88
>gi|312086540|ref|XP_003145116.1| hypothetical protein LOAG_09541 [Loa loa]
Length = 120
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLV CD WMNI+LR+ ICTSRDGD+F +M E Y+RGS IKYLRIPD+
Sbjct: 1 MLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDD 60
Query: 61 IIDMVKEDQVQ-RTRQRDSNRGGR 83
++++VKE+ + R +Q+D R R
Sbjct: 61 VVELVKEEVKEVRRQQKDQQRAKR 84
>gi|302681117|ref|XP_003030240.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
gi|300103931|gb|EFI95337.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
Length = 129
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV T+ DGDKFW++ ECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDKFWKLKECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQV 70
++D VK++Q+
Sbjct: 75 LLDQVKDEQI 84
>gi|407920870|gb|EKG14049.1| Protein-tyrosine phosphatase receptor/non-receptor type
[Macrophomina phaseolina MS6]
Length = 1134
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 49/64 (76%), Positives = 58/64 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS DGD+FWR+PE YIRG+ IKYLR+PDE
Sbjct: 1 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDE 60
Query: 61 IIDM 64
IID+
Sbjct: 61 IIDL 64
>gi|409044160|gb|EKM53642.1| hypothetical protein PHACADRAFT_260106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 130
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 63/69 (91%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS +GDKFW++ ECYIRGS IKYLR+PD+
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLKECYIRGSTIKYLRVPDQ 74
Query: 61 IIDMVKEDQ 69
++D+VKE+Q
Sbjct: 75 LLDVVKEEQ 83
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 67/79 (84%), Gaps = 3/79 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS +GD+FW++ ECYIRGS IKYLR+PD+
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYIRGSTIKYLRVPDQ 74
Query: 61 IIDMVKEDQVQRTRQRDSN 79
++D VKE+Q R R++N
Sbjct: 75 LLDAVKEEQ---NRAREAN 90
>gi|339249295|ref|XP_003373635.1| putative LSM domain protein [Trichinella spiralis]
gi|316970184|gb|EFV54162.1| putative LSM domain protein [Trichinella spiralis]
Length = 307
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
ML+ELKNGETYNGHL CD WMN++LR+VICTS++GD+FWR+PE +IRG IKYLRIP+E
Sbjct: 16 MLIELKNGETYNGHLEACDCWMNVHLRDVICTSKEGDRFWRIPEAFIRGCSIKYLRIPEE 75
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
++D V+ D+++ TR+ R
Sbjct: 76 VMDCVR-DEIKETRKHQRENAKRKS 99
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 59/61 (96%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG+TYNGHLVNCD WMN+NLREVICTS+DGD+FW+MPECYIRG+ IKY+R+P+E
Sbjct: 15 MLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNE 74
Query: 61 I 61
+
Sbjct: 75 V 75
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 67/78 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMN++L+EVICTS+DGD+FWRM CY+RG+ IKY+ +PDE
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYVRGNTIKYVCVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
+I +V+E+ +++ R +
Sbjct: 75 VIGLVEEENLRKKDSRPT 92
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 59/61 (96%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG+TYNGHLVNCD WMN+NLREVICTS+DGD+FW+MPECYIRG+ IKY+R+P+E
Sbjct: 15 MLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNE 74
Query: 61 I 61
+
Sbjct: 75 V 75
>gi|392560868|gb|EIW54050.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 161
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 67/85 (78%), Gaps = 3/85 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LRE TS +GD+FW++ ECYIRGS IKYLR+PD
Sbjct: 45 MLVELKNGETFNGHLVNCDNFMNITLREAYQTSAEGDRFWKLKECYIRGSTIKYLRVPDT 104
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
++D VK++Q R R++ R RG
Sbjct: 105 LLDAVKDEQ---NRAREAGRSARGS 126
>gi|325186130|emb|CCA20631.1| unnamed protein product putative [Albugo laibachii Nc14]
Length = 143
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 63/72 (87%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG+TYNGH NCD WMNINL +VICTS+DGD+FW+MPECYIRG+ +KY+R+P+E
Sbjct: 1 MLVELKNGDTYNGHFKNCDTWMNINLCDVICTSKDGDRFWKMPECYIRGNTVKYVRVPNE 60
Query: 61 IIDMVKEDQVQR 72
I+ +V+E+ R
Sbjct: 61 ILGLVQEENTNR 72
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 74/98 (75%), Gaps = 7/98 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETYNG+L+NCD+WMNINLR VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETYNGYLINCDNWMNINLRNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 61 IIDM-VKEDQVQRTR--QRDSNRGGRGGSNQRGRGGHN 95
IID+ V+E+Q+ R + N GRG RGRG N
Sbjct: 75 IIDLVVEEEQISRPHNLSKGDNTTGRG----RGRGDSN 108
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 60/67 (89%), Gaps = 3/67 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR---DGDKFWRMPECYIRGSMIKYLRI 57
MLVELKNGETYNGHLV+CD WMNI+LREVICTS+ DGD+FWRMPECYIRG+ IKYLR+
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIRGNTIKYLRV 74
Query: 58 PDEIIDM 64
PDE+ D
Sbjct: 75 PDEVSDF 81
>gi|326432761|gb|EGD78331.1| hypothetical protein PTSG_09397 [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGE+YNGHLVNCDH+MNI LR V TS+DGD+FW++ ECYIRGS IKYLR+PDE
Sbjct: 15 MLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECYIRGSTIKYLRLPDE 74
Query: 61 IIDMVKEDQ 69
IIDMV + +
Sbjct: 75 IIDMVIQSE 83
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 64/74 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNG L +CD WMN++L+EVICTS+DGD+FWRM ECY+RG+ IKY+ +PDE
Sbjct: 15 MLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYVRGNTIKYVCVPDE 74
Query: 61 IIDMVKEDQVQRTR 74
++D+VKE+ R +
Sbjct: 75 VLDVVKEEMKNRPQ 88
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 67/82 (81%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE YIRG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
II+MVKE Q + R NRGG
Sbjct: 75 IIEMVKEQQQNQPSNR--NRGG 94
>gi|452001361|gb|EMD93821.1| hypothetical protein COCHEDRAFT_1154389 [Cochliobolus
heterostrophus C5]
Length = 134
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG LVNCD WMN+ LREV+ TS DGDKF R+PE Y+RGS IKYLR+PDE
Sbjct: 15 MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQ 71
I+D+VKE Q +
Sbjct: 75 IVDIVKEQQAK 85
>gi|451849184|gb|EMD62488.1| hypothetical protein COCSADRAFT_221383 [Cochliobolus sativus
ND90Pr]
Length = 141
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG LVNCD WMN+ LREV+ TS DGDKF R+PE Y+RGS IKYLR+PDE
Sbjct: 15 MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQ 71
I+D+VKE Q +
Sbjct: 75 IVDIVKEQQAK 85
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHL+ CD++MN+ +REV TS +G++FW++PECYIRG+ IKY+R+ D
Sbjct: 114 MLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYIRGNTIKYIRVTDN 173
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
+ID VK+ Q R NR RGG NQ
Sbjct: 174 VIDQVKQ---QEDAYRQQNRSSRGGGNQ 198
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET NGHLV+CD WMN+ L+EVI TS DG+ F R+PE Y+RG+ IKYLR+PDE
Sbjct: 15 LLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRD 77
IID+VKE Q Q+ D
Sbjct: 75 IIDIVKEQQAQQAASGD 91
>gi|393239356|gb|EJD46888.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 62/70 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS +GD+FW++ ECYIRGS IKYLR+PD+
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYIRGSTIKYLRVPDQ 74
Query: 61 IIDMVKEDQV 70
++D VK++Q
Sbjct: 75 LLDTVKQEQT 84
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG LVNCD WMN+ LREV+ TS DGDKF ++PE Y+RGS IKYLR+PDE
Sbjct: 15 MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYVRGSTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQ 71
I+D+VKE Q +
Sbjct: 75 IVDVVKEQQAK 85
>gi|393222663|gb|EJD08147.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 130
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS D D+FW++ ECYIRGS IKYLR+PD+
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSADADRFWKLTECYIRGSTIKYLRVPDK 74
Query: 61 IIDMVKEDQ 69
++D VKE+Q
Sbjct: 75 LLDEVKEEQ 83
>gi|47028321|gb|AAT09093.1| U6 snRNA-associated Sm like protein [Bigelowiella natans]
Length = 119
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 63/68 (92%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVEL+NGETYNGHLV+CD+WMN+ +R VICTSRDG++FW+M ECYI+G+ IKYLRIPDE
Sbjct: 15 MLVELRNGETYNGHLVSCDNWMNLLIRGVICTSRDGERFWQMDECYIKGNTIKYLRIPDE 74
Query: 61 IIDMVKED 68
+++ VKE+
Sbjct: 75 VLEKVKEE 82
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK GET NGHLV+CD +MNI L+EV+ TS DGDKF+R+PECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQ 75
++D VK+ Q + Q
Sbjct: 75 VVDAVKDQQAAQQSQ 89
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE YIRG+ IKYLRIP+E
Sbjct: 17 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
II+MVKE + R NRGG
Sbjct: 77 IIEMVKEQPQNQPSNR--NRGG 96
>gi|330946004|ref|XP_003306672.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
gi|311315722|gb|EFQ85223.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
Length = 90
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NG LVNCD WMN+ LREV+ TS DGDKF R+PE Y+RGS IKYLR+PDE
Sbjct: 1 MLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE 60
Query: 61 IIDMVKEDQVQ 71
I+D+VKE Q +
Sbjct: 61 IVDVVKEQQAK 71
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD++MNI +R+V TS+DGD+FW+MPECYIRG+ IK+LRIPDE
Sbjct: 15 MLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYIRGNNIKFLRIPDE 74
Query: 61 IIDMVKEDQ 69
+ID V E++
Sbjct: 75 VIDQVVEEE 83
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 69/82 (84%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
++D+ ++ Q+++Q NRGG
Sbjct: 75 VVDLARDQ--QQSQQSGRNRGG 94
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHLVNCD++MNI LREV TS +GD+FW++ ECYIRGS IKYLR+PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLRECYIRGSTIKYLRVPDT 74
Query: 61 IIDMVKEDQVQRTRQRD 77
++D VK++Q TR R+
Sbjct: 75 LLDAVKDEQ---TRARE 88
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 59/69 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK GET NGHLV CD +MNI L+EV+ TS DGDKF+R+PECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
++D VKE Q
Sbjct: 75 VVDAVKEQQ 83
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE YIRG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
II+MVKE + R NRGG
Sbjct: 75 IIEMVKEQPQNQPSNR--NRGG 94
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGET+NG+LVNCD+WMNINL+ VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETFNGYLVNCDNWMNINLKNVIRTSKDSDKFWKLQSCYIRGNTIKYISVPDE 74
Query: 61 IIDM-VKEDQVQRTRQRDSN 79
IIDM V+E+QV + Q S+
Sbjct: 75 IIDMVVEEEQVVKQHQPASS 94
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE YIRG+ IKYLRIP+E
Sbjct: 27 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 86
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
II+MVKE + R NRGG
Sbjct: 87 IIEMVKEQPQNQPSNR--NRGG 106
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQR 72
IID VKE Q Q+
Sbjct: 75 IIDHVKEQQSQQ 86
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 64/74 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQVQRTR 74
II+MVKE Q +++
Sbjct: 75 IIEMVKEQQANQSQ 88
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK+G+TYNGHLVN D WMN+NLREV+ TSR+GD+FW++ E Y+RG+ +KYLR+P+E
Sbjct: 16 VLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVRGNTVKYLRVPEE 75
Query: 61 IIDMVKEDQVQRTRQRDS-NRGGRGGSNQRGRGG 93
I+D + + Q Q T + S + R GS + R G
Sbjct: 76 IVDTLTDQQSQTTDKSSSFPKNRRPGSRGKRRWG 109
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK+G+TYNGHLVN D WMN+NLREV+ TSR+GD+FW++ E Y+RG+ +KYLR+P+E
Sbjct: 16 VLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVRGNTVKYLRVPEE 75
Query: 61 IIDMVKEDQVQRTRQRDS-NRGGRGGSNQRGRGGHNMRGMRANNA 104
I+D + + Q Q T + S + R GS RG R NN+
Sbjct: 76 IVDTLTDQQSQTTDKSSSFPKNRRPGS----RGNKVFRRKLLNNS 116
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 64/74 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQVQRTR 74
II+MVKE Q +++
Sbjct: 75 IIEMVKEQQANQSQ 88
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
++D+ ++ Q+ +Q NRGG
Sbjct: 75 VVDLARDQ--QQNQQSGRNRGG 94
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHL+ D++MN+ +REV TS DG+KFW++ ECYIRG+ IKY+R+ D
Sbjct: 14 MLVELKNGETFNGHLIQSDNFMNLTMREVYLTSSDGEKFWKLSECYIRGNTIKYIRVTDN 73
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRG 90
+ID+VK+ + +Q S RGG G RG
Sbjct: 74 VIDIVKQQEDSYRQQNRSARGGAGNGTDRG 103
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
Length = 127
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ LREV+ TS +GD+F R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRT 73
IID+VKE Q Q++
Sbjct: 75 IIDIVKEQQSQQS 87
>gi|67540086|ref|XP_663817.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
gi|40738809|gb|EAA57999.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
Length = 775
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ LREV+ TS +GD+F+++PE Y+RG+ IKYLRIP+E
Sbjct: 25 MLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVRGNNIKYLRIPEE 84
Query: 61 IIDMVKE 67
IIDMVKE
Sbjct: 85 IIDMVKE 91
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IK+LR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
++++ ++ Q +Q + GRGG+ Q
Sbjct: 75 VVEIARDQQ----QQNQPSTRGRGGAQQ 98
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 5/93 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ T+ +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
I+D+ K+ Q + + SNR GRG R G
Sbjct: 75 IVDLAKDQQ----QNQPSNR-GRGSQQHRVDSG 102
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 69/86 (80%), Gaps = 5/86 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ LREV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGS 86
++D+ K+ Q + + SNR RGG
Sbjct: 75 VVDLAKDQQ----QNQPSNR-ARGGQ 95
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 69/86 (80%), Gaps = 5/86 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ LREV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 58 MLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVRGNNIKYLRVPEE 117
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGS 86
++D+ K+ Q + + SNR RGG
Sbjct: 118 VVDLAKDQQ----QNQPSNR-ARGGQ 138
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NGHLV+CD WMN+ L+EV+ TS DGDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 16 MLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDE 75
Query: 61 IIDMVKEDQ 69
IID+VK+ Q
Sbjct: 76 IIDLVKDQQ 84
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 18 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 77
Query: 61 IIDMVKEDQVQRTRQRDSNRGG 82
++D+ ++ Q+ +Q +RGG
Sbjct: 78 VVDLARDQ--QQNQQSGRSRGG 97
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 61/67 (91%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD +MN+ L+EV+ TS +GDKF+R+PECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKE 67
I+D+VK+
Sbjct: 75 IVDIVKD 81
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 64/74 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL +CD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQVQRTR 74
II+MVKE Q +++
Sbjct: 75 IIEMVKEQQANQSQ 88
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQ 69
I++MVKE Q
Sbjct: 75 IVEMVKEQQ 83
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IK+LR+P+E
Sbjct: 34 MLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVPEE 93
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
++++ ++ Q +Q + GRGG+ Q
Sbjct: 94 VVEIARDQQ----QQNQPSTRGRGGAQQ 117
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 62/69 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ T+ +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 67 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 126
Query: 61 IIDMVKEDQ 69
I+D+VKE Q
Sbjct: 127 ILDIVKEQQ 135
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 5/93 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ T+ +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
I+D+ K+ Q + + SNR GRG R G
Sbjct: 75 IVDIAKDQQ----QNQPSNR-GRGSQQHRVDSG 102
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ----VQRTRQRDSNRG 81
++D+ K+ Q RTR +RG
Sbjct: 75 VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ----VQRTRQRDSNRG 81
++D+ K+ Q RTR +RG
Sbjct: 75 VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ----VQRTRQRDSNRG 81
++D+ K+ Q RTR +RG
Sbjct: 75 VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|159129598|gb|EDP54712.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus A1163]
Length = 105
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLRIP+E
Sbjct: 1 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 60
Query: 61 IIDMVKEDQ 69
I++MVKE Q
Sbjct: 61 IVEMVKEQQ 69
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV+CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
IID V E Q
Sbjct: 75 IIDQVSESQ 83
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 59/67 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L+EV+ TS +GD+FWR+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKE 67
II++ +E
Sbjct: 75 IIELARE 81
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 66/78 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGETYNG+L +CD WMN++L EVICTS+DG +F++MPE YIRG+ IKY+ +P+E
Sbjct: 15 VLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
++D V+E+ ++R +R +
Sbjct: 75 VVDKVQEENLRRDEKRPT 92
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ S +GD+F+R+PE YIRG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQASPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQ 69
I++MVKE Q
Sbjct: 75 IVEMVKEQQ 83
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 62/69 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ T+ +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ 69
I+D+V+E Q
Sbjct: 75 ILDVVREQQ 83
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ LREV+ TS +GD+F+++PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKE 67
IIDMVKE
Sbjct: 75 IIDMVKE 81
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NGHLV+CD WMN+ L+EV+ TS DGDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 16 MLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDE 75
Query: 61 IIDMVKEDQ 69
IID+VK+ Q
Sbjct: 76 IIDLVKDQQ 84
>gi|168009632|ref|XP_001757509.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691203|gb|EDQ77566.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 64
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNGETYNGHLVNCD WMNI+LRE ICTS DG+ FWRMPEC+IRG+ IKYLR+PDE+
Sbjct: 2 LVELKNGETYNGHLVNCDTWMNIHLREKICTSEDGNCFWRMPECHIRGNTIKYLRVPDEV 61
>gi|357442545|ref|XP_003591550.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
gi|355480598|gb|AES61801.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
Length = 106
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREV CTS DGD+FW MP+CYIRG+ IKYLR+P
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCYIRGNTIKYLRLPPS 74
Query: 61 I 61
+
Sbjct: 75 L 75
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ L+EV+ TS +GD+F+++PE YIRG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQ 69
I++MV+E Q
Sbjct: 75 IVEMVREQQ 83
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF ++PE Y++G+ IKYLR+PD+
Sbjct: 54 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDD 113
Query: 61 IIDMVKEDQV 70
IID+VKE+Q
Sbjct: 114 IIDVVKENQA 123
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV+CD WMN+ L+EV+ TS +GDKF+R+ E Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
IID+VK+ Q
Sbjct: 75 IIDLVKDQQ 83
>gi|341899817|gb|EGT55752.1| CBN-LSM-4 protein [Caenorhabditis brenneri]
Length = 123
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED 68
++D+VK +
Sbjct: 76 VVDLVKSE 83
>gi|17533617|ref|NP_495514.1| Protein LSM-4 [Caenorhabditis elegans]
gi|12230257|sp|Q19952.1|LSM4_CAEEL RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|351065126|emb|CCD66279.1| Protein LSM-4 [Caenorhabditis elegans]
Length = 123
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED 68
++D+VK +
Sbjct: 76 VVDLVKTE 83
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
IID V E Q
Sbjct: 75 IIDQVTEQQ 83
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQ 69
IID V E Q
Sbjct: 75 IIDQVTEQQ 83
>gi|268562665|ref|XP_002646730.1| C. briggsae CBR-LSM-4 protein [Caenorhabditis briggsae]
Length = 124
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED 68
++D+VK +
Sbjct: 76 VVDLVKTE 83
>gi|308503320|ref|XP_003113844.1| CRE-LSM-4 protein [Caenorhabditis remanei]
gi|308263803|gb|EFP07756.1| CRE-LSM-4 protein [Caenorhabditis remanei]
Length = 123
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED 68
++D+VK +
Sbjct: 76 VVDLVKTE 83
>gi|389633655|ref|XP_003714480.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|351646813|gb|EHA54673.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|440476439|gb|ELQ45036.1| glycine rich protein [Magnaporthe oryzae Y34]
gi|440489076|gb|ELQ68756.1| glycine rich protein [Magnaporthe oryzae P131]
Length = 121
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 57/67 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELKNGET NGHLV CD WMN+ LREV+ TS DGDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 1 MMVELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPDE 60
Query: 61 IIDMVKE 67
+ID VKE
Sbjct: 61 VIDQVKE 67
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+ V+ TS DGD F R+PE Y++G+ IKYLR+PDE
Sbjct: 379 MLVELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYVKGNNIKYLRVPDE 438
Query: 61 IIDMVKE 67
IID VKE
Sbjct: 439 IIDAVKE 445
>gi|358058113|dbj|GAA96092.1| hypothetical protein E5Q_02753 [Mixia osmundae IAM 14324]
Length = 123
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NGHL D++MN+ L+EV TS +GD+FW++PECY++G MIKY+R+ D
Sbjct: 15 MLVELKNGETFNGHLSGADNFMNLTLKEVYQTSANGDQFWKLPECYLKGHMIKYVRVADN 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGR 83
++D VKE + + R R S RG R
Sbjct: 75 VLDTVKEQEAE-FRARASTRGKR 96
>gi|402216859|gb|EJT96942.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 132
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD++MNI LREV TS +GD+FW++ ECY+RGS IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLVNCDNFMNITLREVYQTSPEGDRFWKLKECYVRGSTIKYLRVPDQ 74
Query: 61 IIDMVKEDQ 69
++D V+ +Q
Sbjct: 75 LLDEVQLEQ 83
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETYNG LVNCD+WMNIN+R VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETYNGILVNCDNWMNINMRTVIRTSKDSDKFWKLQGCYIRGNTIKYITVPDE 74
Query: 61 IIDMVKEDQ 69
IID+V E++
Sbjct: 75 IIDLVAEEE 83
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 61/74 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGE Y+G L NCD WMN+++R+ + TS+DGD+FW++ E YIRG+ IKYLRIPD
Sbjct: 16 IMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHIKYLRIPDG 75
Query: 61 IIDMVKEDQVQRTR 74
++DMV+ED ++ R
Sbjct: 76 VVDMVQEDAIRLQR 89
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD++MN+ LREV+ TS +GD+F+R+PE YIRG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ 69
I+++VKE Q
Sbjct: 75 IVEIVKEQQ 83
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 64/78 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGETYNG+L CD WMN++L EVICTS+DG +F++MPE YIRG+ IKY+ +P+E
Sbjct: 15 VLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPEE 74
Query: 61 IIDMVKEDQVQRTRQRDS 78
+I V+E+ ++R +R +
Sbjct: 75 VIGKVQEENLKRDEKRPA 92
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD++MN+ LREV+ TS +GD+F+R+PE YIRG+ IKYLR+P+E
Sbjct: 15 MLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIRGNNIKYLRVPEE 74
Query: 61 IIDMVKEDQ 69
I+++VKE Q
Sbjct: 75 IVEIVKEQQ 83
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 61/74 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF ++PE Y++G+ IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDD 74
Query: 61 IIDMVKEDQVQRTR 74
IID+VKE+Q +
Sbjct: 75 IIDVVKENQANHQQ 88
>gi|224015193|ref|XP_002297255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968091|gb|EED86446.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 62/72 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK+G TYNG LVNCD +MN+NLR+V+CTS++GDKFW++ ECYIRGS +KYLR+P++
Sbjct: 15 LLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYIRGSSVKYLRLPED 74
Query: 61 IIDMVKEDQVQR 72
++ VKE+ R
Sbjct: 75 AVERVKEEDEGR 86
>gi|224015187|ref|XP_002297252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968088|gb|EED86443.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 62/72 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK+G TYNG LVNCD +MN+NLR+V+CTS++GDKFW++ ECYIRGS +KYLR+P++
Sbjct: 15 LLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYIRGSSVKYLRLPED 74
Query: 61 IIDMVKEDQVQR 72
++ VKE+ R
Sbjct: 75 AVERVKEEDEGR 86
>gi|71020725|ref|XP_760593.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
gi|46100481|gb|EAK85714.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
Length = 146
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 19/123 (15%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD++MN+ LREV TS G++FW+ ECYIRGS IKY R+ D
Sbjct: 15 MLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYIRGSTIKYCRVADS 74
Query: 61 IIDMV--KEDQVQRTRQRDSNRGG-RGGSNQ---------------RG-RGGHNMRGMRA 101
+ID V +E+Q ++ RQ+ + GG+N RG RGG RG R
Sbjct: 75 VIDQVRQREEQARKQRQQSGSSANVSGGANSANRAGAANGARGAYTRGARGGTADRGARG 134
Query: 102 NNA 104
NA
Sbjct: 135 TNA 137
>gi|336270436|ref|XP_003349977.1| hypothetical protein SMAC_00869 [Sordaria macrospora k-hell]
gi|380095367|emb|CCC06840.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 130
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 58/69 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL+ CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFARLPEVYVKGNNIKYLRVPDD 74
Query: 61 IIDMVKEDQ 69
+ID+ +E Q
Sbjct: 75 VIDIAREQQ 83
>gi|400596410|gb|EJP64184.1| small nuclear ribonucleoprotein [Beauveria bassiana ARSEF 2860]
Length = 116
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 58/69 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L+EV+ TS +GDKF R+PE Y++G+ IKYLR+P+E
Sbjct: 1 MLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPEE 60
Query: 61 IIDMVKEDQ 69
II++ E Q
Sbjct: 61 IIELATEAQ 69
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 58/66 (87%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GET NGHLV+CD WMN+ L+EV+ TS DGDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 16 MLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDE 75
Query: 61 IIDMVK 66
IID+VK
Sbjct: 76 IIDLVK 81
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET+NGHL NCD++MN+ LREVI T DGDKF+R+PECYIRG+ IKYLRI DE
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 61 IIDMVKEDQVQR 72
++ V + Q Q+
Sbjct: 75 VLSQVAKQQAQQ 86
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 58/69 (84%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL+ CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDD 74
Query: 61 IIDMVKEDQ 69
+ID+ +E Q
Sbjct: 75 VIDIAREQQ 83
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 60/67 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD+WMN+ L+EV+ TS +GD+F+R+PE Y+RG+ IKYLR+P+E
Sbjct: 21 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 80
Query: 61 IIDMVKE 67
++D+ ++
Sbjct: 81 VVDLARD 87
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 61/74 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGE Y+G L NCD WMN+++R+ + TS+DGD+FW++ E YIRG+ +KYLRIPD
Sbjct: 16 IMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHVKYLRIPDG 75
Query: 61 IIDMVKEDQVQRTR 74
++DMV+ED ++ R
Sbjct: 76 VVDMVQEDAIRLQR 89
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 61/74 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGE Y+G L NCD WMN+++R+ + TS+DGD+FW++ E YIRG+ IKYLRIPD
Sbjct: 16 IMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHIKYLRIPDG 75
Query: 61 IIDMVKEDQVQRTR 74
++DMV+ED ++ R
Sbjct: 76 VVDMVQEDAIRLQR 89
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK GET NGHLV+CD +MNI L+EV+ TS +GD F+R+ ECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQR 72
++D+VK+ Q +
Sbjct: 75 VVDVVKDQQANQ 86
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 57/67 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV+CD WMN+ L+EV+ TS +GD+F R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKE 67
IID V E
Sbjct: 75 IIDQVSE 81
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELKNGET NGHLV CD WMN+ ++EV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKE 67
+ID+VKE
Sbjct: 75 VIDLVKE 81
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 57/67 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV+CD WMN+ L+EV+ TS +GD+F R+PE Y++G+ IKYLR+PDE
Sbjct: 30 MLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDE 89
Query: 61 IIDMVKE 67
IID V E
Sbjct: 90 IIDQVSE 96
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET+NGHL NCD++ N+ LREVI T DGDKF+R+PECYIRG+ IKYLRI DE
Sbjct: 29 ILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYIRGNNIKYLRIQDE 88
Query: 61 IIDMVKEDQVQRTRQR 76
++ V + Q Q+ R
Sbjct: 89 VLSQVAKQQAQQRENR 104
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK GET NGHLV+CD +MN+ L+EV+ TS +GDKF+R+ ECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDE 74
Query: 61 IIDMVKE 67
++D VKE
Sbjct: 75 VVDAVKE 81
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKE 67
IID V E
Sbjct: 75 IIDQVTE 81
>gi|290984572|ref|XP_002675001.1| predicted protein [Naegleria gruberi]
gi|284088594|gb|EFC42257.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET+NG L NCD +MN+NL +V CTSRDG +FW+M + YIRG +KY+RI DE
Sbjct: 1 MLVELKNGETFNGTLTNCDQFMNMNLEDVTCTSRDGTRFWKMDKVYIRGYTLKYIRILDE 60
Query: 61 IIDMVKEDQVQRTRQRDSNRG 81
II+ VKE+Q +++R + +G
Sbjct: 61 IINKVKEEQ-KKSRSKPQQQG 80
>gi|126133080|ref|XP_001383065.1| hypothetical protein PICST_54497 [Scheffersomyces stipitis CBS
6054]
gi|126094890|gb|ABN65036.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 147
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 63/84 (75%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L+ELKNGET NG LVNCD WMN+ L++VI TS +G+ F ++PE YIRG+ IKYLR+P+E
Sbjct: 15 ILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYIRGNHIKYLRLPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRG 84
I+D KE + QR+ N+ RG
Sbjct: 75 IMDYAKEQNILNMEQRNRNQKRRG 98
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi strain
H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 17/110 (15%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RG+ +KY+R+ DE
Sbjct: 16 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIRVQDE 75
Query: 61 IID-MVKEDQVQRTRQ----------------RDSNRGGRGGSNQRGRGG 93
ID ++E Q+ R NRGGRGG + GR G
Sbjct: 76 AIDQAIEETNEQKARNIGRGRGGRGRGRGTGRGTDNRGGRGGQMRAGRRG 125
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV+CD WMN+ L+EV+ TS +GD+F R+PE Y++G+ IKYLR+PDE
Sbjct: 15 MLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDE 74
Query: 61 IIDMVKEDQVQR 72
IID + + R
Sbjct: 75 IIDQISQHLTTR 86
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 61/75 (81%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG+TYNG L NCD WMNI L++VI TSRD DKF +M E Y+RG+ IKY+ IP+E
Sbjct: 15 MLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEE 74
Query: 61 IIDMVKEDQVQRTRQ 75
++DMV+E+ + + ++
Sbjct: 75 VLDMVQEEDLSKEKR 89
>gi|343425727|emb|CBQ69261.1| related to U6 snRNA-associated Sm-like protein LSm4 [Sporisorium
reilianum SRZ2]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD++MN+ LREV TS G++FW+ ECYIRGS IKY R+ D
Sbjct: 15 MLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYIRGSTIKYCRVADS 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID VKE + +QR
Sbjct: 75 VIDQVKEHEEHARKQR 90
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK+GET+NGHL+ CD++MN+ L++V T+ DG++FW++PECY+RG+ IKY+R+ DE
Sbjct: 15 LLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYLRGNTIKYIRVADE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGS 86
++D +K Q R R+ + R GS
Sbjct: 75 LLDQIKTTQ---DRDREQYKNQRTGS 97
>gi|388855373|emb|CCF51037.1| related to U6 snRNA-associated Sm-like protein LSm4 [Ustilago
hordei]
Length = 149
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD++MN+ LREV TS G++FW+ ECYIRGS IKY R+ D
Sbjct: 15 MLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYIRGSTIKYCRVADS 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID VKE + +QR
Sbjct: 75 VIDQVKEQEEVARKQR 90
>gi|116196218|ref|XP_001223921.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
gi|88180620|gb|EAQ88088.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
Length = 127
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ LREV+ TS +GDKF R+PE Y++G+ IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDD 74
Query: 61 IIDMV 65
IID+V
Sbjct: 75 IIDVV 79
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL+ CD WMN+ LREV+ TS +GDKF R+ E Y++G+ IKYLR+PD+
Sbjct: 15 MLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLREVYVKGNNIKYLRVPDD 74
Query: 61 IIDMVKEDQ 69
+ID+ +E Q
Sbjct: 75 VIDIAREQQ 83
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 59/71 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET+NGHL CD++MN+ L+EVI T +GDKF+RMPECYIRG+ IKYLR+ DE
Sbjct: 15 ILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYIRGNNIKYLRVQDE 74
Query: 61 IIDMVKEDQVQ 71
+++ V + Q Q
Sbjct: 75 LVEQVAKQQSQ 85
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD +MN+ LREV TS DG++FW+M E +I+G++IKY RI D
Sbjct: 15 MLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADN 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGG-RGG 85
I++ E+Q + R + RGG RGG
Sbjct: 75 ILEQAAEEQ-DKARAANRARGGARGG 99
>gi|344230315|gb|EGV62200.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 140
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 60/85 (70%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET NG L NCD WMN+ L EVI TS + + F ++PE YIRGS IKYLR+P++
Sbjct: 15 ILVELKNGETLNGLLTNCDSWMNLTLSEVIQTSPNAEVFTKIPEIYIRGSHIKYLRLPEQ 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
+D KE + QR+ N+ RGG
Sbjct: 75 TMDYAKEQNMINMEQRNKNQNRRGG 99
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 60/85 (70%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET NG LVNCD WMN+ L VI S +G F ++PECY+RG+ IKY+R+P+E
Sbjct: 15 ILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANGTNFLKLPECYVRGNHIKYMRLPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG 85
++D KE + QR+ N+ R G
Sbjct: 75 LMDYAKEQTLLNLEQRNRNQKRRTG 99
>gi|448536329|ref|XP_003871097.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis Co
90-125]
gi|380355453|emb|CCG24972.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis]
Length = 155
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 55/67 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK GETYNG+L NCD WMN+ L EVI T+ DGD+F ++PE YI+G IKYLRIPD+
Sbjct: 15 ILVELKTGETYNGNLTNCDSWMNLTLHEVIQTNADGDEFAKLPEIYIKGMHIKYLRIPDQ 74
Query: 61 IIDMVKE 67
IID VKE
Sbjct: 75 IIDHVKE 81
>gi|443897116|dbj|GAC74458.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 244
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELKNG T+NGHLV CD++MN+ LREV TS G++FW+ ECYIRGS IKY R+ D +
Sbjct: 125 LVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYIRGSTIKYCRVADSV 184
Query: 62 IDMVKEDQVQRTRQR 76
ID VKE + +QR
Sbjct: 185 IDQVKETEEAARKQR 199
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD++MN+ LREV TS DG++FW+M E +I+G++IKY RI D
Sbjct: 14 MLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFIKGNIIKYFRIADA 73
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
I+D E Q++ NR Q RG
Sbjct: 74 ILDSAFE-------QQEKNRAAAKTRGQSARG 98
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELKNGE++NGHL++CD +MNI LREV T+ D D+FW++ E YIRGS IKYL++
Sbjct: 15 MMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRFWKLKEVYIRGSTIKYLQVQPA 74
Query: 61 IIDMVKEDQVQRTRQ 75
++D VKE+Q Q+ R+
Sbjct: 75 LLDAVKEEQ-QKARE 88
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 23/117 (19%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RGS +KY+R+ D+
Sbjct: 14 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSSVKYIRVQDQ 73
Query: 61 IID-MVKEDQVQRTRQR---------------------DSNRGGRGGS-NQRGRGGH 94
I+ ++E Q++R RGGRGG+ GRGG+
Sbjct: 74 AIENAIEETAEQKSRNAGRGRGGVRGSGRNRGRGFGRGTDKRGGRGGNIRAAGRGGY 130
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLVNCD WMN+ L +V+ TS +GDKF R+ E Y++G+ IKYLR+ +E
Sbjct: 50 MLVELKNGETLNGHLVNCDTWMNLTLTQVVQTSPEGDKFMRLKEVYVKGNNIKYLRVAEE 109
Query: 61 IIDMVKEDQ 69
II++ E Q
Sbjct: 110 IIELATEAQ 118
>gi|50413178|ref|XP_457218.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
gi|49652883|emb|CAG85213.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
Length = 165
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGE+ NG LVNCD WMN+ L++VI +S +G+ F ++PECYIRG+ IKYLR+P+E
Sbjct: 15 ILVELKNGESLNGQLVNCDSWMNLTLKDVIQSSSNGETFVKLPECYIRGNHIKYLRLPEE 74
Query: 61 IIDMVKEDQV 70
I+D KE +
Sbjct: 75 IMDYAKEQNI 84
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated Sm-like
protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated Sm-like
protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 23/117 (19%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RGS +KY+R+ D+
Sbjct: 14 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSSVKYIRVQDQ 73
Query: 61 IID-MVKEDQVQRTRQR---------------------DSNRGGRGGS-NQRGRGGH 94
I+ ++E Q++R RGG+ G+ GRGGH
Sbjct: 74 AIENAIEETAEQKSRNAGRGRGGVRGSGRNRGRGFGRGTDKRGGKAGNIRTTGRGGH 130
>gi|448080879|ref|XP_004194749.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359376171|emb|CCE86753.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 130
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET NG LVNCD WMN+ L V+ S +G F ++PECY+RG+ IKY+R+P+E
Sbjct: 15 ILVELKNGETLNGELVNCDSWMNLTLNNVVQVSENGTNFLKLPECYVRGNHIKYMRLPEE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGR 83
++D KE + QR+ N+ R
Sbjct: 75 LMDYAKEQTLLNLEQRNRNQKRR 97
>gi|401413718|ref|XP_003886306.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
gi|325120726|emb|CBZ56281.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
Length = 98
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELK+GETY+G L NCD +MN++L++ +CTS+DG++FW++ ECYIRG+M+KY+R+ +E
Sbjct: 16 MMVELKSGETYSGLLANCDGFMNLHLKDSVCTSKDGERFWKLTECYIRGNMVKYIRLQEE 75
Query: 61 IIDMVKEDQ 69
+++ K+D+
Sbjct: 76 VLETAKDDK 84
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 56/74 (75%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK G+TYNG +VNCD +MN+NL++VICTS DG+ F ++P CYIRGS IKYLR+P
Sbjct: 15 ILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCYIRGSSIKYLRLPPS 74
Query: 61 IIDMVKEDQVQRTR 74
+++ Q + R
Sbjct: 75 LLETAAAQQEEEER 88
>gi|397636074|gb|EJK72132.1| hypothetical protein THAOC_06366, partial [Thalassiosira
oceanica]
Length = 385
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 58/67 (86%), Gaps = 2/67 (2%)
Query: 5 LKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYI--RGSMIKYLRIPDEII 62
+++G TYNG LV+CD +MNINLR+V+CTS+DGD+FW++ ECYI RGS +KYLR+P+E +
Sbjct: 2 VESGTTYNGRLVSCDTYMNINLRDVVCTSKDGDQFWKLNECYIRCRGSSVKYLRLPEEAV 61
Query: 63 DMVKEDQ 69
D V+E++
Sbjct: 62 DRVQEEE 68
>gi|149036058|gb|EDL90724.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_b [Rattus norvegicus]
Length = 103
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/50 (88%), Positives = 47/50 (94%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQ 71
MNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDEIIDMV+E+ +
Sbjct: 1 MNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAK 50
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RG+ +KY+R+ D+
Sbjct: 16 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIRVQDQ 75
Query: 61 IID-MVKEDQVQRTR 74
ID ++E Q+ R
Sbjct: 76 AIDQAIEETNEQKAR 90
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RG+ +KY+R+ D+
Sbjct: 43 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIRVQDQ 102
Query: 61 IID-MVKEDQVQRTR 74
ID ++E Q+ R
Sbjct: 103 AIDQAIEETNEQKAR 117
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 59/72 (81%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G LV CD +MN++++ +ICTS+DGDKFW++ ECY+RG+ IKY+R+ D+
Sbjct: 16 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSIKYIRVQDQ 75
Query: 61 IIDMVKEDQVQR 72
I+ E+ ++
Sbjct: 76 AIEQAIEETAEQ 87
>gi|354548533|emb|CCE45270.1| hypothetical protein CPAR2_702830 [Candida parapsilosis]
Length = 161
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELK GETYNG+L NCD WMN+ L +VI T+ DGD+F ++ E YI+G IKYLRIPD+
Sbjct: 15 ILVELKTGETYNGNLTNCDSWMNLTLHDVIQTNADGDEFAKIAEIYIKGMHIKYLRIPDQ 74
Query: 61 IIDMVKE 67
I+D VKE
Sbjct: 75 IMDRVKE 81
>gi|134109199|ref|XP_776714.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259394|gb|EAL22067.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 147
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD +MN+ LREV TS DG++FW+M E +I+G++IKY RI D
Sbjct: 15 MLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADN 74
Query: 61 IIDMVKEDQ 69
I++ E+Q
Sbjct: 75 ILEQAAEEQ 83
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 58/76 (76%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNG L CD WMN++L +V+CT++DGD+F + C+IRG+ IKY+ + +E
Sbjct: 15 MLVELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCFIRGNTIKYMCVQEE 74
Query: 61 IIDMVKEDQVQRTRQR 76
II + KE+ +R QR
Sbjct: 75 IIQLAKEENERRAAQR 90
>gi|405119017|gb|AFR93790.1| glycine rich protein [Cryptococcus neoformans var. grubii H99]
Length = 133
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD +MN+ LREV TS DG++FW+M E +I+G++IKY RI D
Sbjct: 1 MLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADN 60
Query: 61 IIDMVKEDQ 69
I++ E+Q
Sbjct: 61 ILEQAAEEQ 69
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNG T+NGHLV CD +MN+ LREV TS DG++FW+M E +I+G++IKY RI D+
Sbjct: 15 MLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADD 74
Query: 61 IIDMVKEDQ 69
I++ +Q
Sbjct: 75 ILEQAAAEQ 83
>gi|346970495|gb|EGY13947.1| small nuclear ribonucleoprotein [Verticillium dahliae VdLs.17]
Length = 130
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 22/91 (24%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGS---------- 50
MLVELKNGET NGHLV CD WMN+ L+EV+ TS +GDKF ++PE Y++G+
Sbjct: 1 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNVRTHLCLFI 60
Query: 51 ------------MIKYLRIPDEIIDMVKEDQ 69
IKYLR+PD+I D+VKE+Q
Sbjct: 61 RSSANAKLIAGLQIKYLRVPDDISDIVKENQ 91
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 57/63 (90%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELK+GETY+G L +CD +MN++L++ +CTS+DG++FW++ ECYIRG+M+KY+R+ DE
Sbjct: 16 MMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIRGNMVKYIRLQDE 75
Query: 61 IID 63
+++
Sbjct: 76 VLE 78
>gi|428671714|gb|EKX72629.1| U6 snRNA-associated protein, putative [Babesia equi]
Length = 111
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
L+ELKNGETY+G L +CD +MNI++ V+CTS+ G FW++ ECYIRG+ +K LR+P+E+
Sbjct: 17 LIELKNGETYSGILESCDAFMNIHMLNVVCTSKSGTDFWKLNECYIRGNNVKSLRLPNEV 76
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
++ KE+ + GRG
Sbjct: 77 AELAKEESKPAAKPNAVAYSGRG 99
>gi|344299688|gb|EGW30041.1| hypothetical protein SPAPADRAFT_57515 [Spathaspora passalidarum
NRRL Y-27907]
Length = 140
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 55/86 (63%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L+ELK GETY G LVN D WMN+ L VI T+ D+F + E YIRG IKYLRIPDE
Sbjct: 15 VLIELKTGETYQGDLVNLDPWMNLTLSNVIHTNTGADEFSKETEVYIRGMHIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGS 86
I+D KE + QR+ N RGG
Sbjct: 75 IMDYAKEQNLLNMEQRNKNVKRRGGD 100
>gi|406697343|gb|EKD00606.1| glycine rich protein [Trichosporon asahii var. asahii CBS 8904]
Length = 154
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 22/92 (23%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSM---------- 51
LVELKNG T+NGHLV+CDH+MN+ LREV TS DG+KFW+M E +I+G++
Sbjct: 16 LVELKNGVTFNGHLVDCDHFMNVTLREVYQTSADGEKFWKMKEMFIKGNVSDRDYFSPTV 75
Query: 52 ------------IKYLRIPDEIIDMVKEDQVQ 71
IKY RI D ++D E+Q Q
Sbjct: 76 KLAYFQERADLQIKYFRIADSVLDQAAEEQKQ 107
>gi|403222920|dbj|BAM41051.1| U6 snRNA-associated sm-like protein lsm4 [Theileria orientalis
strain Shintoku]
Length = 120
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 59/71 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L+ELKNGETY+G L +CD +MN+++ V+CTS++G +FW++ EC+IRG+ +K LR+P+E
Sbjct: 2 VLIELKNGETYSGILDSCDSFMNMHMVNVVCTSKNGTEFWKLNECFIRGNNVKSLRLPNE 61
Query: 61 IIDMVKEDQVQ 71
+ ++ KE++ Q
Sbjct: 62 VAEIAKEEKPQ 72
>gi|449457365|ref|XP_004146419.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 138
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 11/76 (14%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWR+ I
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRVSNI-----------ISSL 63
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 64 VIDKVQEETKSRADRK 79
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETY+G L+ D +MN+ L VI TS+DG +F+RM ECY+RG+ IKY+R+ D
Sbjct: 16 IMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYLRGNNIKYIRMNDN 75
Query: 61 IIDMVKEDQVQR 72
II VK++ +QR
Sbjct: 76 IIGTVKDEMIQR 87
>gi|71027801|ref|XP_763544.1| U6 snRNA-associated protein [Theileria parva strain Muguga]
gi|68350497|gb|EAN31261.1| U6 snRNA-associated protein, putative [Theileria parva]
Length = 141
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 59/76 (77%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
L+ELKNGETY+G L +CD +MN+++ V+CTS+ G FW++ EC+IRG+ +K LR+P+E+
Sbjct: 17 LIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEV 76
Query: 62 IDMVKEDQVQRTRQRD 77
++ KE++ R +++
Sbjct: 77 AEIAKEEKRPRKTRKN 92
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET +G L CD +MN+++R V+ TSR+GDKFW++ EC++RG+ +K +R+PD+
Sbjct: 16 MLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFVRGNNLKSVRLPDQ 75
Query: 61 IIDMVKED--QVQRTRQRDSNRG 81
+ ++ +E+ + Q + +NRG
Sbjct: 76 VANLAEEESRREQLGNLQSTNRG 98
>gi|85000985|ref|XP_955211.1| u6 snrna-associated sm-like protein lsm4 [Theileria annulata
strain Ankara]
gi|65303357|emb|CAI75735.1| u6 snrna-associated sm-like protein lsm4, putative [Theileria
annulata]
Length = 105
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 56/71 (78%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
L+ELKNGETY+G L +CD +MN+++ V+CTS+ G FW++ EC+IRG+ +K LR+P+E+
Sbjct: 17 LIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEV 76
Query: 62 IDMVKEDQVQR 72
++ KE++ R
Sbjct: 77 AEIAKEEKHPR 87
>gi|361127598|gb|EHK99561.1| putative U6 snRNA-associated Sm-like protein LSm4 [Glarea
lozoyensis 74030]
Length = 115
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRG 49
MLVELKNGET NGHLV CD WMN+ L+EV+ TS DGDKF+R+PE Y++G
Sbjct: 15 MLVELKNGETLNGHLVTCDTWMNLTLKEVVQTSPDGDKFYRLPEVYVKG 63
>gi|401885982|gb|EJT50058.1| glycine rich protein [Trichosporon asahii var. asahii CBS 2479]
Length = 63
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
MLVELKNG T+NGHLV+CDH+MN+ LREV TS DG+KFW+M E +I+G+ + YL+
Sbjct: 1 MLVELKNGVTFNGHLVDCDHFMNVTLREVYQTSADGEKFWKMKEMFIKGN-VSYLQ 55
>gi|156083282|ref|XP_001609125.1| U6 snRNA-associated Sm-like protein LSm4 [Babesia bovis T2Bo]
gi|154796375|gb|EDO05557.1| U6 snRNA-associated Sm-like protein LSm4, putative [Babesia bovis]
Length = 104
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 8 GETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKE 67
GETY+G L +CD +MN+++ ICTS+ GD+FW++ EC+IRG+ +K R PDE+ + E
Sbjct: 11 GETYSGILSSCDAFMNVHMINAICTSKKGDEFWKLSECFIRGNNVKSFRFPDEVATVALE 70
Query: 68 DQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
+ + Q + N G RGR H RG
Sbjct: 71 ES-KAMVQENMNINGPDRGASRGRRPHQGRG 100
>gi|444726630|gb|ELW67154.1| hypothetical protein TREES_T100014725 [Tupaia chinensis]
Length = 1488
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/40 (85%), Positives = 36/40 (90%)
Query: 35 DGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTR 74
DGDKFWRMPECYIRGS IKYLRIPDEIIDMVKE+ V + R
Sbjct: 162 DGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGR 201
>gi|45200801|ref|NP_986371.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|44985499|gb|AAS54195.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|374109616|gb|AEY98521.1| FAGL296Wp [Ashbya gossypii FDAG1]
Length = 168
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 10/105 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +ELKNGET G LVN D+WMN+ L+ V+ D+ ++PE Y+RGS IKY+R+ D+
Sbjct: 15 LFIELKNGETIEGELVNVDNWMNLTLQSVVHAGS--DQTLQLPEIYVRGSFIKYIRLQDD 72
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGG-SNQRGRGGHNMRGMRANNA 104
II+ VK+ Q +S + G G QR R G G R NA
Sbjct: 73 IIEKVKQ-------QLNSGKDGSGSNGQQRDRDGRRYNGRREGNA 110
>gi|406865614|gb|EKD18655.1| pentatricopeptide repeat protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 788
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 48/74 (64%), Gaps = 18/74 (24%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHLV CD WMN+ L+EV+ TS IKYLR+PDE
Sbjct: 88 MLVELKNGETLNGHLVTCDTWMNLTLKEVVQTSP-----------------IKYLRVPDE 130
Query: 61 IIDMVKEDQVQRTR 74
IID+VK DQ QR +
Sbjct: 131 IIDLVK-DQQQREQ 143
>gi|312371005|gb|EFR19287.1| hypothetical protein AND_22756 [Anopheles darlingi]
Length = 250
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 35 DGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQR 76
DGDKFWRMPECYIRGS IKYLRIPDE+IDMVKED ++R R
Sbjct: 19 DGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEDVQAKSRNR 60
>gi|363755190|ref|XP_003647810.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891846|gb|AET40993.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET G L N D+WMN+ L V+ + G++ +PE Y+RGS+IKY+++ D+
Sbjct: 15 MLVELKNGETIEGELTNVDNWMNVTLGNVVH--KGGEQVLELPEIYVRGSVIKYIKLQDD 72
Query: 61 IIDMVKE 67
IID VK+
Sbjct: 73 IIDKVKQ 79
>gi|300122633|emb|CBK23201.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVEL NGETYNG LV+CD +MN+ L + I T++ G +F+ + ECYIRG+ +K +R+ +
Sbjct: 32 ILVELTNGETYNGKLVSCDSYMNLVLNDAILTTKTGSRFFHLSECYIRGATVKCIRLSKD 91
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSN 87
+I+ V ++ R R + S+
Sbjct: 92 VINNVPAEEQNSKYNRAVVRSKKPYSS 118
>gi|164657129|ref|XP_001729691.1| hypothetical protein MGL_3235 [Malassezia globosa CBS 7966]
gi|159103584|gb|EDP42477.1| hypothetical protein MGL_3235 [Malassezia globosa CBS 7966]
Length = 86
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMI 52
+LVELKN ET+NGHLV CD++MNI +R+V TS G++FW+MPE YI+GS +
Sbjct: 15 ILVELKNSETFNGHLVACDNYMNITMRDVFQTSSSGEQFWKMPEVYIKGSTV 66
>gi|385305583|gb|EIF49545.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 109
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+VELK GET NG L NCD WMNI +++++ + G+ F+++ Y++G IKY+ + +++
Sbjct: 1 MVELKRGETLNGTLTNCDSWMNITMKDIVVSDAHGENFYKLKSTYVKGIHIKYITMSNDL 60
Query: 62 IDMVKEDQV-QRTRQRDSNRGG 82
ID +E+Q+ +R R N GG
Sbjct: 61 IDKFREEQLKEREYYRHRNNGG 82
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GE+ GHL+ CDHWMN+ L+EV S G+ + E Y+RGS IK L++PDE
Sbjct: 17 MLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQLPDE 76
Query: 61 IIDMVK 66
++ +K
Sbjct: 77 LLHSIK 82
>gi|260944226|ref|XP_002616411.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
gi|238850060|gb|EEQ39524.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
Length = 71
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET G L NCD WMN+ L V+ G+KF ++ E YIRGS IKYLR+PD
Sbjct: 10 ILVELKNGETVIGKLSNCDSWMNLTLSNVVHNYNKGEKFNKIEEIYIRGSHIKYLRLPDS 69
Query: 61 I 61
+
Sbjct: 70 V 70
>gi|198436641|ref|XP_002128163.1| PREDICTED: similar to GL19160 isoform 2 [Ciona intestinalis]
Length = 80
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 34/38 (89%)
Query: 35 DGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQR 72
DGD FWRMPECYIRGS IKYLRIPDE+IDMVKED + +
Sbjct: 2 DGDHFWRMPECYIRGSTIKYLRIPDEVIDMVKEDSMSK 39
>gi|119605095|gb|EAW84689.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_d [Homo sapiens]
Length = 159
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSR G G + + P
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRVGAA-----PTNGGGMQGVHTQPPPS 69
Query: 61 IIDMVKEDQVQR-TRQRDSNRGGRGGSNQRGRGGHNM 96
+ Q R R +RG GG+ Q G GH +
Sbjct: 70 LPGPHGRSQWGRPPRTARPSRGQSGGTGQ-GELGHQV 105
>gi|390362888|ref|XP_003730250.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like, partial
[Strongylocentrotus purpuratus]
Length = 59
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 35 DGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQR 72
DGD+FWRMPECYIRGS IKYLRIPDE+IDMVKE+ V +
Sbjct: 3 DGDRFWRMPECYIRGSTIKYLRIPDEVIDMVKEEVVSK 40
>gi|146422975|ref|XP_001487421.1| hypothetical protein PGUG_00798 [Meyerozyma guilliermondii ATCC
6260]
gi|146388542|gb|EDK36700.1| hypothetical protein PGUG_00798 [Meyerozyma guilliermondii ATCC
6260]
Length = 105
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 5/76 (6%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRG 81
MN+ L++VI +S GD+F ++PE YIRG IKY+R+PDEI+D KE + QR+ +
Sbjct: 1 MNLTLKDVIQSSASGDEFLKLPEIYIRGIHIKYMRMPDEIMDHAKEQNLINMEQRNRTQK 60
Query: 82 GRGG-----SNQRGRG 92
RGG SN+RG G
Sbjct: 61 RRGGGPNFNSNRRGHG 76
>gi|241957447|ref|XP_002421443.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
gi|223644787|emb|CAX40778.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
Length = 148
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 19/86 (22%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVI-CTSRDGDK------------------FWR 41
+L+ELK+G+ YNG+L NCD WMN+ L VI S +G K F +
Sbjct: 15 ILIELKSGQIYNGYLTNCDSWMNLTLHNVIQIDSLNGTKEGEGEGEGERDNKEKENVFLK 74
Query: 42 MPECYIRGSMIKYLRIPDEIIDMVKE 67
+ E YIRG IKYLRIPD+I+ KE
Sbjct: 75 LSEIYIRGIHIKYLRIPDDIMKYAKE 100
>gi|67614518|ref|XP_667378.1| ENSANGP00000016613 [Cryptosporidium hominis TU502]
gi|126648602|ref|XP_001388069.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|54658514|gb|EAL37152.1| ENSANGP00000016613 [Cryptosporidium hominis]
gi|126117157|gb|EAZ51257.1| hypothetical protein cgd4_2710 [Cryptosporidium parvum Iowa II]
Length = 77
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRG 81
MN+ L VIC SRDG+ F++M ECYIRG+ IK +RI DE I+ K+D QR R NRG
Sbjct: 1 MNLALNNVICNSRDGNGFFKMVECYIRGNNIKLIRISDENINTAKDDMTQRETARLGNRG 60
>gi|322695394|gb|EFY87203.1| small nuclear ribonucleoprotein [Metarhizium acridum CQMa 102]
Length = 106
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 20/77 (25%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTS---------RD-----------GDKFW 40
MLVELKNGET NGHLV CD WMN+ LREV+ TS RD GDKF
Sbjct: 15 MLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPVRLTVQSARDGQQREANIAQRGDKFV 74
Query: 41 RMPECYIRGSMIKYLRI 57
R+ E Y++G+ + +
Sbjct: 75 RLKEAYVKGNNVPPFPV 91
>gi|255712429|ref|XP_002552497.1| KLTH0C06248p [Lachancea thermotolerans]
gi|238933876|emb|CAR22059.1| KLTH0C06248p [Lachancea thermotolerans CBS 6340]
Length = 175
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNGET G L N D+WMN+ L +V TS ++ E Y+RG+ IKY+++ D+
Sbjct: 15 LVIELKNGETIVGQLTNVDNWMNLTLTDVTHTS--ASDTVKLSEIYVRGNFIKYIKLQDD 72
Query: 61 IIDMVKE 67
+I+ VK+
Sbjct: 73 VIEKVKQ 79
>gi|50309757|ref|XP_454891.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|15072878|emb|CAC48005.1| hypothetical protein [Kluyveromyces lactis]
gi|49644026|emb|CAG99978.1| KLLA0E20813p [Kluyveromyces lactis]
Length = 183
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 9/83 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M VELKNGET G L + D+WMN+ L V + G+ ++P Y++GS IKY+ + D+
Sbjct: 15 MHVELKNGETVEGTLSDVDNWMNLTLSNVTHVAS-GETL-KLPSFYLKGSFIKYVNLQDD 72
Query: 61 IIDMVKEDQVQRTRQRDSNRGGR 83
IID VK+ Q NRGG+
Sbjct: 73 IIDKVKQ-------QWGQNRGGK 88
>gi|390986477|gb|AFM35758.1| hypothetical protein, partial [Oryza eichingeri]
Length = 33
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/33 (90%), Positives = 32/33 (96%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSR 34
LVELKNGETYNGHLVNCD WMNI+LREVICTS+
Sbjct: 1 LVELKNGETYNGHLVNCDTWMNIHLREVICTSK 33
>gi|365981439|ref|XP_003667553.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
gi|343766319|emb|CCD22310.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
Length = 201
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKF-------WRMPECYIRGSMIK 53
M VELKNGE G L N D+WMN+ L V + D F + E Y+RG+ IK
Sbjct: 15 MRVELKNGEVIEGKLTNVDNWMNLTLSNV-SEYKGSDAFASPQTEVMKSTEIYVRGTFIK 73
Query: 54 YLRIPDEIIDMVKE 67
Y+ +PD+IID+VK+
Sbjct: 74 YINLPDDIIDIVKQ 87
>gi|71395956|ref|XP_802346.1| U6 snRNA-associated Sm-like protein LSm4 [Trypanosoma cruzi strain
CL Brener]
gi|70862121|gb|EAN80900.1| U6 snRNA-associated Sm-like protein LSm4, putative [Trypanosoma
cruzi]
Length = 164
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL NGET NG ++ D MN+ L++ I T +GD FW+ E IRG+ ++ +R+ + +
Sbjct: 74 VELANGETINGTVMRVDRLMNLLLKQCIRTGAEGDVFWKSRESLIRGASVRNVRMDERAL 133
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
M + R + R + G +RGRG
Sbjct: 134 VMPEARAAVRNKSRPDTKKQATGGKKRGRG 163
>gi|444730614|gb|ELW70992.1| Uridine-cytidine kinase 2 [Tupaia chinensis]
Length = 492
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRI 57
ML ELK+GETY+ HLV+CD+ MN++LREVI GD+ W MPEC+I K +++
Sbjct: 7 MLGELKDGETYSDHLVSCDNGMNVSLREVIY----GDRLWCMPECHISSVCAKIVQL 59
>gi|254578266|ref|XP_002495119.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
gi|238938009|emb|CAR26186.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
Length = 173
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV--------ICTSRDGDKFWRMPECYIRGSMI 52
M +ELKNGE G L+N D+WMN+ L + + + E YIRG+ I
Sbjct: 15 MSIELKNGEIVEGELINVDNWMNVTLSNASQFDNIGTTVSVGPSKEVVKAKEVYIRGTYI 74
Query: 53 KYLRIPDEIIDMVKED-----QVQRTRQRDSNRGGRGGSNQRGRGGHN 95
KY+R+ DEIID VK+ S RG R G N G G N
Sbjct: 75 KYIRLQDEIIDQVKQQINNNSNSNNNYGSGSYRGRRSGFNSPGGGSAN 122
>gi|254564743|ref|XP_002489482.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029278|emb|CAY67201.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 122
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN T NG+LV+CD WMN+ L V+ G+ F + P+ Y+ G IK +R+ + II
Sbjct: 17 VELKNNVTINGYLVDCDSWMNLTLENVLEVDATGEHFKKFPQFYVHGVEIKGVRMDENII 76
Query: 63 DMVKEDQ 69
D ++ +
Sbjct: 77 DRARQKE 83
>gi|395333040|gb|EJF65418.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 128
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTQRDG-RVSQLDQVYIRGSMVRFFIVPDMLQ 81
Query: 62 -IDMVKE--DQVQRTRQRDSNRGG----RGGSNQRGRGGHNMRGMR 100
M K R R + RG RG S++RGRG RG+R
Sbjct: 82 NAPMFKRVGPNAMRGRGIGTARGRATIMRGASSRRGRGVPAARGIR 127
>gi|58264244|ref|XP_569278.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107716|ref|XP_777469.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321248376|ref|XP_003191109.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|50260161|gb|EAL22822.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223928|gb|AAW41971.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457576|gb|ADV19322.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118776|gb|AFR93550.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 124
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G L+ + +NI LRE+ T+RDG + ++ + YIRGSMI+++ +PD
Sbjct: 21 VELKTGEMYRGKLMEAEDTLNIALREITVTARDG-RVSQLEQVYIRGSMIRFIIVPD 76
>gi|328349910|emb|CCA36310.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Komagataella
pastoris CBS 7435]
Length = 146
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN T NG+LV+CD WMN+ L V+ G+ F + P+ Y+ G IK +R+ + II
Sbjct: 41 VELKNNVTINGYLVDCDSWMNLTLENVLEVDATGEHFKKFPQFYVHGVEIKGVRMDENII 100
Query: 63 DMVKEDQ 69
D ++ +
Sbjct: 101 DRARQKE 107
>gi|403356719|gb|EJY77960.1| hypothetical protein OXYTRI_00397 [Oxytricha trifallax]
Length = 187
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 7/91 (7%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+V+ KNGE+Y+G L+ CD WMN+ L++VI T+ G +F + + +IRG+ +K +++ +EI
Sbjct: 1 MVDTKNGESYDGTLLKCDDWMNLYLKDVIRTTTTG-QFSKFEQVFIRGNHVKNIQLSEEI 59
Query: 62 IDMVKEDQVQRTRQR------DSNRGGRGGS 86
I+ + + +R ++ +S RGGS
Sbjct: 60 IENYQAELKRRQAEKAIQGNFESEGKQRGGS 90
>gi|71405397|ref|XP_805321.1| U6 snRNA-associated Sm-like protein LSm4 [Trypanosoma cruzi strain
CL Brener]
gi|29468365|gb|AAO85522.1| putative U6 snRNA-associated Sm-like protein LSm4 [Trypanosoma
cruzi]
gi|70868683|gb|EAN83470.1| U6 snRNA-associated Sm-like protein LSm4, putative [Trypanosoma
cruzi]
Length = 113
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL NGET NG ++ D MN+ L++ I T +GD FW+ E IRG+ ++ +R+ + +
Sbjct: 23 VELANGETINGTVMRVDRLMNLLLKQCIRTGAEGDVFWKSRESLIRGASVRNVRMDERAL 82
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
M + + + R + G +RGRG
Sbjct: 83 VMPETRAAVKNKSRPGTKKQATGGKKRGRG 112
>gi|219110787|ref|XP_002177145.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411680|gb|EEC51608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 87
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+KNGE Y G LV + MN++L +V+ T+R+G K +MP Y+RGS I+++ +PD
Sbjct: 21 VEMKNGEIYRGLLVGAEDTMNVSLSDVLRTARNG-KITKMPNVYLRGSSIRFIALPD 76
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ VELK G+TY G L + + +NI+LR++ T RDG + ++ YIRGSM+++ +PD
Sbjct: 20 ITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDG-RVSQLDSVYIRGSMVRFFIVPDM 78
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG---HNMRGMRANNAPKPT 108
+ + +V + GRG RGR N R R AP+P
Sbjct: 79 LQNAPMFKRVGPNAMK-----GRGIGTARGRATIMRANAR--RGRGAPQPA 122
>gi|156846025|ref|XP_001645901.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156116571|gb|EDO18043.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 193
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG-------DKFWRMPECYIRGSMIK 53
+ +ELKNGET G L N D+WMN+ L +VI D + +PE Y+RG+ IK
Sbjct: 15 ITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEGLSVPEIYLRGTYIK 74
Query: 54 YLRIPDEIIDMVKE 67
Y+ + D+II+ V++
Sbjct: 75 YINLQDDIIENVRQ 88
>gi|367011739|ref|XP_003680370.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
gi|359748029|emb|CCE91159.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
Length = 175
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGD--------KFWRMPECYIRGSMIKY 54
VELKNGE G L N D+WMN+ L V G+ + + E Y+RG+ IKY
Sbjct: 17 VELKNGEIVEGELTNVDNWMNLTLSNVSQQDTIGNSGNIAFQKEIVKSQEVYLRGTYIKY 76
Query: 55 LRIPDEIIDMVKEDQVQRTRQRDSNRG 81
+++ D +ID VK+ +D+N G
Sbjct: 77 IKLQDNVIDQVKQQISNNNGSKDNNSG 103
>gi|365761122|gb|EHN02798.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 177
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----------DGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S D K ++ E Y+RG+
Sbjct: 15 MQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENAIDSENNADKSKAIKLNEIYVRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|366989241|ref|XP_003674388.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS 4309]
gi|342300251|emb|CCC68009.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS 4309]
Length = 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV--------ICTSRDGDKFWRMPECYIRGSMI 52
M VELKNGE G L N D+WMN+ L V I T + + + E Y+RG+ I
Sbjct: 15 MRVELKNGEIVEGKLTNVDNWMNLTLSNVSEYKSSDTIATPQ--TEVVKSTEIYVRGTFI 72
Query: 53 KYLRIPDEIIDMVKED------QVQRTRQRDSNRGGRGGS 86
KY+ + D+IID+VK+ R R+ +NR GS
Sbjct: 73 KYINLQDDIIDIVKQQINNNMNNSNRDRKYQNNRYPSSGS 112
>gi|401840547|gb|EJT43325.1| LSM4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 163
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----------DGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S D K ++ E Y+RG+
Sbjct: 1 MQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENGIDSENNADKSKAIKLNEIYVRGT 60
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 61 FIKFIKLQDNIIDKVKQ 77
>gi|261335446|emb|CBH18440.1| U6 snRNA-associated Sm-like protein LSm4p [Trypanosoma brucei
gambiense DAL972]
Length = 127
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL GET NG +V D MN+ L++ I TS DG+ FWR E IRG+ ++ +R+ DE
Sbjct: 23 VELAGGETINGTVVRVDRAMNMVLKQCIRTSADGEAFWRSRESLIRGASVRNVRM-DERA 81
Query: 63 DMVKEDQVQRTRQRDSNRG-GRGGSNQRGRG 92
++ + Q++ + N+ + SN + +G
Sbjct: 82 VIIADAQLREVTSKSKNKNRAKAKSNDKQQG 112
>gi|401626033|gb|EJS44001.1| lsm4p [Saccharomyces arboricola H-6]
Length = 179
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTS----------RDGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + +K ++ E Y+RG+
Sbjct: 15 MQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSGESAINSENNAENNKAVKLNEIYVRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|151944828|gb|EDN63087.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSENNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|154342983|ref|XP_001567437.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064769|emb|CAM42875.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 116
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +GET NG ++ D MN+ +++ T DG+ FW+ EC+IRG+ +K +R+ D +
Sbjct: 24 IELSDGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKSRECFIRGASVKNVRMTDSAL 83
Query: 63 DMVKEDQVQRTRQRDSNRGG 82
V V R+ N+G
Sbjct: 84 VSV---PVPAKRKAAGNKGA 100
>gi|605651|gb|AAA58257.1| regulatory protein [Saccharomyces cerevisiae]
gi|190405674|gb|EDV08941.1| U6 snRNA associated protein [Saccharomyces cerevisiae RM11-1a]
gi|207345878|gb|EDZ72558.1| YER112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271267|gb|EEU06342.1| Lsm4p [Saccharomyces cerevisiae JAY291]
gi|323309425|gb|EGA62642.1| Lsm4p [Saccharomyces cerevisiae FostersO]
gi|323333783|gb|EGA75174.1| Lsm4p [Saccharomyces cerevisiae AWRI796]
gi|323355304|gb|EGA87129.1| Lsm4p [Saccharomyces cerevisiae VL3]
gi|349577787|dbj|GAA22955.1| K7_Lsm4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299814|gb|EIW10906.1| Lsm4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|398364697|ref|NP_011037.3| Lsm4p [Saccharomyces cerevisiae S288c]
gi|731503|sp|P40070.1|LSM4_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|603351|gb|AAC03210.1| Uss1p: core protein of small nuclear ribonucleoprotein
[Saccharomyces cerevisiae]
gi|695736|emb|CAA57975.1| USS1 [Saccharomyces cerevisiae]
gi|285811744|tpg|DAA07772.1| TPA: Lsm4p [Saccharomyces cerevisiae S288c]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|323337992|gb|EGA79231.1| Lsm4p [Saccharomyces cerevisiae Vin13]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|323305273|gb|EGA59020.1| Lsm4p [Saccharomyces cerevisiae FostersB]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|74025772|ref|XP_829452.1| U6 snRNA-associated Sm-like protein LSm4p [Trypanosoma brucei
TREU927]
gi|45331345|gb|AAS57926.1| Lsm4p [Trypanosoma brucei]
gi|70834838|gb|EAN80340.1| U6 snRNA-associated Sm-like protein LSm4p [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 127
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL GET NG +V D MN+ L++ I TS DG+ FWR E IRG+ ++ +R+ DE
Sbjct: 23 VELAGGETINGTVVRVDRAMNMVLKQCIRTSADGEAFWRSRESLIRGASVRNVRM-DERA 81
Query: 63 DMVKEDQVQRTRQRDSNRG---GRGGSNQRGRGGHNMRGMRAN 102
++ + Q++ + N+ + Q+G + G + N
Sbjct: 82 VIIADAQLREVTSKSKNKNRVKAKSNDKQQGERKATLSGEKRN 124
>gi|146096286|ref|XP_001467757.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania infantum
JPCM5]
gi|398020660|ref|XP_003863493.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania donovani]
gi|134072123|emb|CAM70822.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania infantum
JPCM5]
gi|322501726|emb|CBZ36807.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania donovani]
Length = 197
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +GET NG ++ D MN+ +++ T DG+ FW+ EC+IRG+ +K +R+ D +
Sbjct: 105 IELADGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKSRECFIRGASVKNVRMTDSAL 164
Query: 63 DMVKEDQVQRTRQRDSNRGGRG 84
V ++ GG+G
Sbjct: 165 VAVPAPSKRKA------AGGKG 180
>gi|255731564|ref|XP_002550706.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131715|gb|EER31274.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 96
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKE 67
MN+ L VI T+ +GD+F ++PE YIRG IKYLRIPD+I+ KE
Sbjct: 1 MNLTLHNVIQTNSNGDEFTKIPEIYIRGMHIKYLRIPDDIMSYAKE 46
>gi|119605094|gb|EAW84688.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_c [Homo sapiens]
Length = 84
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 42 MPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTR 74
MPECYIRGS IKYLRIPDEIIDMVKE+ V + R
Sbjct: 1 MPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGR 33
>gi|323348917|gb|EGA83154.1| Lsm4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 187
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----------DGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K + E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNXESSKAVKXNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|365766129|gb|EHN07630.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 187
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----------DGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K + E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKSNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|401426861|ref|XP_003877914.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494161|emb|CBZ29458.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 190
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +GET NG ++ D MN+ +++ T DG+ FW+ EC++RG+ +K +R+ D +
Sbjct: 98 IELADGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKARECFVRGASVKNVRMTDSAL 157
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
V R+ +G + GG
Sbjct: 158 VAAP---VPSKRKAAGGKGAHAHKEKSVAGG 185
>gi|259146036|emb|CAY79296.1| Lsm4p [Saccharomyces cerevisiae EC1118]
Length = 187
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----------DGDKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K + E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNVESSKAVKSNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>gi|302679434|ref|XP_003029399.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
gi|300103089|gb|EFI94496.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
Length = 125
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+E+ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 22 VELKTGQLYRGKLAEAEDNLNISLKEITVTGRDG-RVSQLDQVYIRGSMIRFFIVPDML- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANN-APKP 107
++ R + GRG RGR MR R AP P
Sbjct: 80 ----QNAPMFKRVGPNAMKGRGIGTARGR-ATIMRARRGRGVAPTP 120
>gi|157873766|ref|XP_001685387.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania major strain
Friedlin]
gi|68128459|emb|CAJ08573.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania major strain
Friedlin]
Length = 189
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +GET NG ++ D MN+ +++ T DG+ FW+ EC+IRG+ +K +R+ D +
Sbjct: 97 IELADGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKSRECFIRGASVKNVRMTDSAL 156
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMR 97
V V R+ ++G + GG R
Sbjct: 157 VAV---PVLSKRKAAGSKGADTRKEKSVAGGKRPR 188
>gi|169846820|ref|XP_001830124.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
gi|116508894|gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
Length = 126
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMIRFFIVPDMLQ 81
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANN-APKP 107
+ +V R GRG RGR MR R AP P
Sbjct: 82 NAPMFKRVGPNAMR-----GRGIGTARGR-ATIMRARRGRGVAPAP 121
>gi|301108107|ref|XP_002903135.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
gi|262097507|gb|EEY55559.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
Length = 113
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELKNGE Y GHL + MN L +V+ T RDG K ++ Y+RGS IK + +PD
Sbjct: 22 IELKNGEVYRGHLTESEDSMNCQLSDVVLTQRDGQK-SKLELVYVRGSQIKLVILPD 77
>gi|393244822|gb|EJD52333.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 126
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L+ + +NI+L+++ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 22 VELKTGQLYRGKLLEAEDSLNISLKDITVTGRDG-RVSQLDQVYIRGSMIRFFIVPDMLQ 80
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+ +V R GRG RGR
Sbjct: 81 NAPMFKRVGPNAMR-----GRGIGTARGR 104
>gi|389741899|gb|EIM83087.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 126
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+E+ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 22 VELKTGQLYRGKLAEAEDNLNISLKEITVTGRDG-RISQLDQVYIRGSMVRFFIVPDMLQ 80
Query: 63 DMVKEDQVQRTRQRDSNRG-GRG------GSNQRGRGGHNMRGMR 100
+ +V R G RG + +RGRG RG+R
Sbjct: 81 NAPMFKRVGPNAMRGRGIGTARGRATIMRANARRGRGVPAARGIR 125
>gi|353236668|emb|CCA68658.1| related to small nuclear ribonucleoprotein sm d3 [Piriformospora
indica DSM 11827]
Length = 129
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 22 VELKTGQLYRGKLAEAEDSLNISLKDITVTGRDG-RISQLDQVYIRGSMIRFFIVPDMLQ 80
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ +V R GRG RGR
Sbjct: 81 NAPMFKRVGPNAMR-----GRGIGTARGRA 105
>gi|340059607|emb|CCC53997.1| putative small nucleolar ribonucleoprotein-like protein
[Trypanosoma vivax Y486]
Length = 115
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL GET NG +V D MN+ L++ I T+ DG FWR E +RG+ ++ +R+ + +
Sbjct: 23 VELAGGETVNGTVVRVDRAMNMVLKQCIRTASDGATFWRSRETLLRGASVRNVRMDERAL 82
Query: 63 DM-VKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
+ V E + N+GGR G + GG
Sbjct: 83 AVPVTEPRTA------ENKGGRQGVKKNPSGG 108
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G L+ + +NI L+++ T+RDG + +M YIRGSMI+++ +PD
Sbjct: 21 VELKTGEMYRGKLMEAEDNLNIALKDITVTARDG-RVSQMDMVYIRGSMIRFVIVPD 76
>gi|388579924|gb|EIM20243.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 123
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK+G+ Y G L + +N++L+++ T+RDG + ++ + YIRGSMIK+L +PD
Sbjct: 19 IELKSGQMYRGKLQEAEDNLNVSLQDITVTARDG-RVSQLDQVYIRGSMIKFLVVPD 74
>gi|444323153|ref|XP_004182217.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
gi|387515264|emb|CCH62698.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
Length = 196
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP--------ECYIRGSMI 52
M +ELKNGE G L N D+WMN+ L V + +G F P E Y+RG+ I
Sbjct: 15 MTIELKNGEVVEGELTNVDNWMNLTLTNV--SQHNGSDFISGPQVEVVKSKEIYLRGTYI 72
Query: 53 KYLRIPDEIIDMVK 66
KY+ + +IID VK
Sbjct: 73 KYISLQKDIIDQVK 86
>gi|409080651|gb|EKM81011.1| hypothetical protein AGABI1DRAFT_112714 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197565|gb|EKV47492.1| hypothetical protein AGABI2DRAFT_192678 [Agaricus bisporus var.
bisporus H97]
Length = 128
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMIRFFIVPDMLQ 81
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG----GHNMRGMRANNAPK 106
+ +V R GRG RGR + RG A AP+
Sbjct: 82 NAPMFKRVGPNAMR-----GRGIGTARGRATIMRANARRGRGAVPAPR 124
>gi|392594010|gb|EIW83335.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T+RDG + ++ + YIRGSMI++ +PD +
Sbjct: 21 VELKTGQLYRGKLAEAEDNLNISLKDITVTARDG-RVSQLDQVYIRGSMIRFFIVPDMLQ 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ +V R GRG RGR
Sbjct: 80 NAPMFKRVGPNAMR-----GRGIGTARGRA 104
>gi|403373657|gb|EJY86747.1| Small nuclear ribonucleoprotein [Oxytricha trifallax]
Length = 692
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G+L+ + MN+ L +V T +DG ++ + + ++RGS ++++ IP
Sbjct: 20 VELKSGELYRGYLMEAEDTMNMRLDDVYVTGKDGRQY-HLDQVFVRGSQVRFIIIP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNRNELF 115
DM+K + + R + + G+ +GRG RG+ + P+ L ++ F
Sbjct: 75 DMLKNSPMFK-RIANQAKKGKNALLAKGRG----RGIAEEDHPRQNLEASKDF 122
>gi|389644246|ref|XP_003719755.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|351639524|gb|EHA47388.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|440466514|gb|ELQ35778.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae Y34]
gi|440477082|gb|ELQ58226.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae P131]
Length = 119
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ G+TY G L++ + MNI LR++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 ITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R+R N GRG RGR N
Sbjct: 77 --DMLRNAPMFRSR----NVRGRGVGLARGRATVN 105
>gi|393217444|gb|EJD02933.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 22 VELKTGQLYRGKLAEAEDSLNISLKDITVTGRDG-RVSQLDQVYIRGSMVRFFIVPDMLQ 80
Query: 63 DMVKEDQVQRTRQRDSNRG-GRG------GSNQRGRGGHNMRGMR 100
+ +V R G RG + +RGRG RG+R
Sbjct: 81 NAPMFKRVGPNAMRGRGIGTARGRATIMRANARRGRGQPAARGIR 125
>gi|449546694|gb|EMD37663.1| hypothetical protein CERSUDRAFT_123559 [Ceriporiopsis
subvermispora B]
Length = 127
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK G+ Y G L + +NI+L+E+ T RDG + ++ + YIRGSM+++ +PD
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKEITVTQRDG-RVSQLDQVYIRGSMVRFFIVPD 78
>gi|402079014|gb|EJT74279.1| small nuclear ribonucleoprotein Sm D3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ G+TY G L+ + MNI LR++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 ITLEITTGQTYRGKLIEAEDNMNIQLRDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R+R N GRG RGR N
Sbjct: 77 --DMLRNAPMFRSR----NVRGRGVGLARGRATVN 105
>gi|403412007|emb|CCL98707.1| predicted protein [Fibroporia radiculosa]
Length = 127
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSMI++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMIRFFIVPDMLQ 81
Query: 63 DMVKEDQVQRTRQRDSNRG-GRG------GSNQRGRGGHNMRGMR 100
+ +V R G RG + +RGRG RG+R
Sbjct: 82 NAPMFKRVGPNAMRGRGIGTARGRATIMRANARRGRGVPAARGIR 126
>gi|325192510|emb|CCA26944.1| small nuclear ribonucleoprotein Sm D3 putative [Albugo laibachii
Nc14]
Length = 112
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD- 59
+ VELKNGE Y GHL + MN L V+ ++R+G K ++ + Y+RGS IK++ +P+
Sbjct: 20 ITVELKNGEIYRGHLEESEDSMNCQLSNVVLSARNGQK-CKLEQVYVRGSQIKFIILPEL 78
Query: 60 -------EIIDMVKEDQVQRTRQRDSNRGGR 83
E + +K + +R R R R
Sbjct: 79 LKNSPLFEKVRSIKPEPEKRKAHRPKTRRNR 109
>gi|294874372|ref|XP_002766923.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|294881753|ref|XP_002769480.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239868298|gb|EEQ99640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239872939|gb|EER02198.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 119
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VE++ GE Y GHL++ + MN+ + EV+ T RDG K + + YIRGS I+Y+ +PD +
Sbjct: 21 VEMQTGELYRGHLIHTEDNMNLLIAEVVVTRRDG-KQTSLEQAYIRGSKIRYIVVPDNL 78
>gi|366991799|ref|XP_003675665.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
gi|342301530|emb|CCC69299.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
Length = 102
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G L+ + MN+ LR+V+ T D K RM ++RGS IK+ +PD
Sbjct: 21 IELTTGETYRGKLIESEDNMNVQLRDVVVTQTDS-KITRMDHVFVRGSHIKFFVVPD 76
>gi|326428962|gb|EGD74532.1| small nuclear ribonucleoprotein Sm D3 [Salpingoeca sp. ATCC
50818]
Length = 128
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELKNGE Y G L+ + MN +R+V T+RDG + ++ YIRGS IK+ +PD
Sbjct: 21 IELKNGEMYRGKLIEAEDNMNSQMRDVTFTARDG-QVTQLDTVYIRGSKIKFFVLPD 76
>gi|77022848|ref|XP_888868.1| hypothetical protein CaJ7_s010 [Candida albicans SC5314]
gi|76573681|dbj|BAE44765.1| hypothetical protein [Candida albicans]
Length = 95
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQV 70
MN+ L VI T G+KF ++PE YIRG IKYLRIPD+I+ KE +
Sbjct: 1 MNLTLHNVIQTDSRGEKFMKIPEIYIRGIHIKYLRIPDDIMGYAKEQSM 49
>gi|336363219|gb|EGN91635.1| hypothetical protein SERLA73DRAFT_192176 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384161|gb|EGO25309.1| hypothetical protein SERLADRAFT_465253 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMVRFFIVPDMLQ 81
Query: 63 DMVKEDQVQRTRQRDSNRG-GRG------GSNQRGRGGHNMRGMR 100
+ +V R G RG + +RGRG RG+R
Sbjct: 82 NAPMFKRVGPNAMRGRGIGTARGRATIMRANARRGRGVPAARGIR 126
>gi|392569479|gb|EIW62652.1| small nuclear ribonucleo protein Sm D3 [Trametes versicolor
FP-101664 SS1]
Length = 131
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTQRDG-RVSQLDQVYIRGSMVRFFIVPD 78
>gi|390602523|gb|EIN11916.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 127
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 23 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMVRFFIVPDMLQ 81
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG---HNMRGMRANNAPK 106
+ +V R GRG RGR N R R AP+
Sbjct: 82 NAPMFKRVGPNAMR-----GRGIGTARGRATIMRANARRGRGVPAPR 123
>gi|255718497|ref|XP_002555529.1| KLTH0G11396p [Lachancea thermotolerans]
gi|238936913|emb|CAR25092.1| KLTH0G11396p [Lachancea thermotolerans CBS 6340]
Length = 102
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GE Y G LV+ + MN+ LR+V T+RDG RM ++RGS I++ +PD
Sbjct: 21 LELTTGEAYRGKLVDSEDNMNVQLRDVTATARDG-SVTRMDHVFVRGSHIRFFVVPD 76
>gi|238883402|gb|EEQ47040.1| hypothetical protein CAWG_05595 [Candida albicans WO-1]
Length = 97
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQV 70
MN+ L VI T G+KF ++PE YIRG IKYLRIPD+I+ KE +
Sbjct: 1 MNLTLHNVIQTDSRGEKFMKIPEIYIRGIHIKYLRIPDDIMGYAKEQSM 49
>gi|167524150|ref|XP_001746411.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775173|gb|EDQ88798.1| predicted protein [Monosiga brevicollis MX1]
Length = 325
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKNGE Y G LV + MN LR+V T+RDG + + YIRGS I++ +P
Sbjct: 192 IELKNGEIYRGKLVEAEDNMNSQLRDVTFTARDG-QVAHVESVYIRGSKIRFFVLP---- 246
Query: 63 DMVKEDQVQRTRQRDSNRGGRG 84
DM+K + + GRG
Sbjct: 247 DMLKNAPMFKRASAKGMTAGRG 268
>gi|410084212|ref|XP_003959683.1| hypothetical protein KAFR_0K01940 [Kazachstania africana CBS
2517]
gi|372466275|emb|CCF60548.1| hypothetical protein KAFR_0K01940 [Kazachstania africana CBS
2517]
Length = 182
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVI-CTSRDGD---KFWRMPECYIRGSMIKYLR 56
M VELK+GE G L N D+WMN+ LR + + DG + + E Y++G IKY++
Sbjct: 15 MRVELKSGEIIEGELTNVDNWMNLTLRNISEYKNTDGSPQLEVVKSSEIYLKGIYIKYIK 74
Query: 57 IPDEIIDMVKE 67
+ D+II+ VK+
Sbjct: 75 LQDDIINNVKQ 85
>gi|170087186|ref|XP_001874816.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650016|gb|EDR14257.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 127
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G+ Y G L + +NI+L+++ T RDG + ++ + YIRGSM+++ +PD +
Sbjct: 22 VELKTGQLYRGKLAEAEDNLNISLKDITVTGRDG-RVSQLDQVYIRGSMVRFFIVPDMLQ 80
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+ +V R GRG RGR
Sbjct: 81 NAPMFKRVGPNAMR-----GRGIGTARGR 104
>gi|300175666|emb|CBK20977.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD- 59
++VEL NGE Y GHLV + MN L V +RDG K ++ YIRGS ++Y+ +PD
Sbjct: 18 VIVELTNGEKYRGHLVRAEDNMNCQLTNVTMRARDG-KLSKLENVYIRGSRVRYVVLPDI 76
Query: 60 -------EIIDMVKEDQVQRTRQRDSNRG 81
+ + +KE + R+++ +G
Sbjct: 77 LKQSPMFQKVQQLKEAKESVEREKNKLKG 105
>gi|358055777|dbj|GAA98122.1| hypothetical protein E5Q_04805 [Mixia osmundae IAM 14324]
Length = 128
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +ELK G+TY G L++ + +NI++ ++ T RDG + ++ + YIRG MI + +PD
Sbjct: 20 ITIELKTGQTYRGKLLDAEDNLNISMSQITVTQRDG-RVTQLDQVYIRGPMINFFIVPDM 78
Query: 61 I--IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ M K RQ + GRG RGR
Sbjct: 79 LAHAPMFK-------RQGPNALKGRGIGTARGRA 105
>gi|254567285|ref|XP_002490753.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
gi|238030549|emb|CAY68473.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
Length = 100
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
EL +GE+Y G LV + MNI L++V T++DG K M + +IRGS I++ +P EI+
Sbjct: 20 AELTSGESYRGKLVESEDSMNIQLKDVTLTAQDG-KVSHMEQIFIRGSQIRFFSVP-EIL 77
Query: 63 DMVKEDQVQRTRQRDSNRGGR 83
T+ + RG R
Sbjct: 78 KNAPIFNANETKPQAPIRGPR 98
>gi|224008695|ref|XP_002293306.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970706|gb|EED89042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 182
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
++KNGE Y G L+N + MN+ L EV+ T+R+G + ++P Y+RGS ++++ +PD
Sbjct: 89 QMKNGEIYRGLLLNAEDTMNMTLSEVVRTARNG-QVSKLPTVYLRGSGVRFIALPD 143
>gi|410082351|ref|XP_003958754.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
gi|372465343|emb|CCF59619.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
Length = 102
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G L+ + MN+ LR+ I T+ +K +M +IRGS IK+L +PD
Sbjct: 20 LELNNGDTYRGKLLTNEDNMNLQLRDTIVTNAQTNKQTKMDHVFIRGSQIKFLSLPD 76
>gi|294933185|ref|XP_002780640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239890574|gb|EER12435.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 120
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VE++ GE Y GHL++ + MN+ + EV+ T +DG K + + YIRGS I+Y+ +PD +
Sbjct: 21 VEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDG-KQTSLEQAYIRGSKIRYIVVPDNL 78
>gi|116206378|ref|XP_001228998.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183079|gb|EAQ90547.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|85102544|ref|XP_961352.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
gi|12718393|emb|CAC28701.1| probable small nuclear ribonucleoprotein SM D3 [Neurospora crassa]
gi|28922896|gb|EAA32116.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
Length = 116
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|440492904|gb|ELQ75435.1| Small nuclear ribonucleoprotein (snRNP) [Trachipleistophora
hominis]
Length = 91
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN +TY G LV CD MN+ L+ V S DG+K + EC +RGS +K++++ ++++
Sbjct: 17 VELKNNDTYRGTLVACDLLMNLRLKNVRLVSSDGEKDFN--ECILRGSAVKHIKLNNKVL 74
Query: 63 DMVKEDQVQRTR 74
+ ++ V+R R
Sbjct: 75 YV--QEMVERKR 84
>gi|189199034|ref|XP_001935854.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330913493|ref|XP_003296291.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
gi|187982953|gb|EDU48441.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311331686|gb|EFQ95612.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
Length = 118
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +GE Y G L+ + MN+ L+++ T+RDG + + + YIRGS ++Y +PD
Sbjct: 20 VTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRYFIVPDM 78
Query: 61 IIDM--------------VKEDQVQRTRQRDSNRGGRGG 85
+ + + + R R S RGG GG
Sbjct: 79 LRNAPMFRSRGTRGRGVGLARGRATVNRARASTRGGAGG 117
>gi|340904841|gb|EGS17209.1| small nuclear ribonucleoprotein smD3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 114
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LELTTGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQIYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|402466238|gb|EJW01770.1| hypothetical protein EDEG_00361 [Edhazardia aedis USNM 41457]
Length = 121
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTS-----RDGDKFWRMPECYIRGSMIKYL 55
++VELKN + Y G L CD MN+ L+ V T ++G + + ECY++GS+IK++
Sbjct: 15 VVVELKNNDVYEGLLKGCDLSMNLFLKNVSVTKTFLQCKEGFEPEYLQECYLKGSVIKHI 74
Query: 56 RIPDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRA 101
R+ +E++++ ++ + G N R NMR ++A
Sbjct: 75 RLHNEVLNV-------QSNLETKGKDFTNGKNSSRRNSANMRNIQA 113
>gi|145510436|ref|XP_001441151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408390|emb|CAK73754.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRI-PD 59
+++E+K G+TY+G L D +MN+ L V TS+DG+ F + E I+G+ IKY R+ PD
Sbjct: 18 VVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELLIKGNSIKYFRLNPD 77
>gi|342888751|gb|EGU87970.1| hypothetical protein FOXB_01453 [Fusarium oxysporum Fo5176]
gi|408397687|gb|EKJ76827.1| hypothetical protein FPSE_03013 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L++ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLLDAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|302410425|ref|XP_003003046.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
gi|261358070|gb|EEY20498.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
Length = 154
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L+ + MNI L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 ITLEITSGQTYRGKLLEAEDNMNIQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N+ GRG RGR
Sbjct: 77 --DMLRNAPMFRSR----NQRGRGVGLARGRA 102
>gi|50294275|ref|XP_449549.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528863|emb|CAG62525.1| unnamed protein product [Candida glabrata]
Length = 99
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G LV + MN+ LR+V+ TS K RM ++RGS I++ +PD
Sbjct: 19 IELNNGDTYRGKLVESEDNMNVQLRDVMVTS-STQKLSRMDHVFVRGSHIRFFVVPD 74
>gi|171693559|ref|XP_001911704.1| hypothetical protein [Podospora anserina S mat+]
gi|170946728|emb|CAP73532.1| unnamed protein product [Podospora anserina S mat+]
Length = 118
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 VTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAP 105
DM++ + R+R N GRG RGR + RA+ P
Sbjct: 77 --DMLRNAPMFRSR----NVRGRGVGLARGRA--TVSRARASGGP 113
>gi|400601331|gb|EJP68974.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 115
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+ SN GRG RGR
Sbjct: 77 DMLRNAPMFRS----SNLRGRGVGMARGRA 102
>gi|322694233|gb|EFY86068.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium acridum CQMa
102]
Length = 113
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L++ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLLDAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NLRGRGVGLARGRA 102
>gi|336269505|ref|XP_003349513.1| hypothetical protein SMAC_03101 [Sordaria macrospora k-hell]
gi|380093412|emb|CCC09070.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 116
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 VTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 --DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|367037323|ref|XP_003649042.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
gi|346996303|gb|AEO62706.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
Length = 114
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|320589183|gb|EFX01645.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 116
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGRLLEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|46123175|ref|XP_386141.1| hypothetical protein FG05965.1 [Gibberella zeae PH-1]
Length = 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L++ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 270 VTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 326
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 327 --DMLRNAPMFRSR----NVRGRGVGLARGRA 352
>gi|367024463|ref|XP_003661516.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
gi|347008784|gb|AEO56271.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
Length = 114
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|145549786|ref|XP_001460572.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428402|emb|CAK93175.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRI-PD 59
+++E+K G+TY+G L D +MN L V TS+DG+ F + E I+G+ IKY R+ PD
Sbjct: 18 VVIEVKAGDTYDGKLELLDKFMNAKLTNVKHTSKDGNSFHGIKELLIKGNSIKYFRLNPD 77
>gi|164661203|ref|XP_001731724.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
gi|159105625|gb|EDP44510.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
Length = 126
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK G TY G L + + NI+++++ T+RDG K + YIRG+MI+++ +PD
Sbjct: 21 IELKGGATYRGRLFDAEDNFNISMKDIAVTARDG-KQTHLDSVYIRGNMIRFMVVPD 76
>gi|302830880|ref|XP_002947006.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
gi|300268050|gb|EFJ52232.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
Length = 129
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L + MN+ L++V T RDG + ++ +IRGS +++ IPD
Sbjct: 25 VELKSGEMYRGELFEAEDNMNVQLKDVTATGRDG-RVSQLAHIFIRGSRVRFFIIPD 80
>gi|302909812|ref|XP_003050156.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
gi|256731093|gb|EEU44443.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
Length = 384
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L++ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 290 VTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 346
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 347 --DMLRNAPMFRSR----NVRGRGVGLARGRA 372
>gi|340519305|gb|EGR49544.1| predicted protein [Trichoderma reesei QM6a]
gi|358388432|gb|EHK26025.1| hypothetical protein TRIVIDRAFT_27430, partial [Trichoderma virens
Gv29-8]
gi|358392460|gb|EHK41864.1| hypothetical protein TRIATDRAFT_134655, partial [Trichoderma
atroviride IMI 206040]
Length = 114
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 20 ITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 --DMLRNAPMFRSR----NVRGRGVGLARGRA 102
>gi|298714042|emb|CBJ27274.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 113
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VE+KNGE Y GHL + MN + V T RDG + ++ + Y+RGS IK + +PD +
Sbjct: 21 VEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDG-RVSKLEQVYLRGSHIKLVVLPDVLK 79
Query: 63 DMVKEDQVQRTRQRDSN 79
+ VQ+ +++D
Sbjct: 80 NAPVFKPVQKMKKKDEE 96
>gi|310799322|gb|EFQ34215.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 115
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQTYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R N GRG RGR
Sbjct: 77 DMLRNAPMFRSR----NVRGRGVGMARGRA 102
>gi|451851728|gb|EMD65026.1| hypothetical protein COCSADRAFT_36375 [Cochliobolus sativus ND90Pr]
gi|451995470|gb|EMD87938.1| hypothetical protein COCHEDRAFT_1183070 [Cochliobolus
heterostrophus C5]
Length = 116
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +GE Y G L+ + MN+ L+++ T+RDG + + + YIRGS ++Y +P
Sbjct: 20 VTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRYFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+R GRG RGR
Sbjct: 77 --DMLRNAPMFRSRGTR----GRGVGLARGRA 102
>gi|328771488|gb|EGF81528.1| hypothetical protein BATDEDRAFT_7518, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 77
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK G Y G L+N + MN+ LR++ T+R+G + ++ + +IRGS I+++ +PD
Sbjct: 13 IELKTGSVYRGKLLNAEDNMNVQLRDITHTARNG-RVSQLTQVFIRGSQIRFVIVPD 68
>gi|429965895|gb|ELA47892.1| hypothetical protein VCUG_00612 [Vavraia culicis 'floridensis']
Length = 91
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN +TY G LV CD MN+ LR V + DG+K + EC +RGS +K++++ ++++
Sbjct: 17 VELKNNDTYRGTLVACDLLMNLRLRNVRLVNGDGEKDF--SECILRGSAVKHIKLNNKVL 74
>gi|328856039|gb|EGG05162.1| hypothetical protein MELLADRAFT_48913 [Melampsora larici-populina
98AG31]
Length = 138
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ VELK G+ Y G L + + +NI+L+++ T RDG + ++ + YIRG MI+ IPD
Sbjct: 20 ITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDG-RVTQLDQVYIRGPMIRLYVIPDM 78
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ Q +R + GRG RGR
Sbjct: 79 L-------QNAPMFKRGTGVKGRGIGTARGRA 103
>gi|297845022|ref|XP_002890392.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
gi|297336234|gb|EFH66651.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L ++ T++DG K ++ +IRGS ++++ IPD +
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDIL- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
++ D+ G+ S GRG MRG
Sbjct: 80 -----KHAPMFKRLDARIKGKSSSLGVGRGRAAMRG 110
>gi|384497430|gb|EIE87921.1| hypothetical protein RO3G_12632 [Rhizopus delemar RA 99-880]
Length = 129
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK G+ Y G L+ + MNI L+++ T+RDG + ++ + YIRGS +++ +PD
Sbjct: 20 LELKTGQLYRGKLLEAEDNMNIQLKDITVTARDG-RVSQLDQVYIRGSHVRFFIVPD 75
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELKNGE Y G L+ + MN ++ + T+RDG + +M CY+RGS ++++ +PD
Sbjct: 20 VELKNGELYRGTLIESEDNMNCRMKNITVTARDG-RNSQMEYCYVRGSKVRFIILPD 75
>gi|397638104|gb|EJK72932.1| hypothetical protein THAOC_05490 [Thalassiosira oceanica]
Length = 112
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G L+N + MN+ L EV+ T R+G + + Y+RGS I+++ +PD
Sbjct: 21 VEMKSGEIYRGLLLNAEDTMNMTLSEVVRTGRNG-QVTKHSTVYLRGSGIRFIALPD 76
>gi|156550773|ref|XP_001605596.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nasonia
vitripennis]
Length = 142
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAP 124
>gi|323454301|gb|EGB10171.1| hypothetical protein AURANDRAFT_36815 [Aureococcus anophagefferens]
Length = 113
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIK-----YLRI 57
+ELKNGE Y GHL + MN + +V+ T+RDG + ++ YIRGS IK ++ +
Sbjct: 25 IELKNGEIYRGHLDESEETMNCLVTDVVVTARDG-RVTKLENVYIRGSQIKRERRAFMIL 83
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGGRG 84
PD + ++V+ ++ D + RG
Sbjct: 84 PDLLKHSPVFEKVKELKKADDAKPRRG 110
>gi|169614183|ref|XP_001800508.1| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
gi|160707292|gb|EAT82563.2| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
Length = 117
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +GE Y G L+ + MN+ L+++ T+RDG + + + YIRGS ++Y +P
Sbjct: 20 ITLEITSGEVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLEQVYIRGSHVRYFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
DM++ + R+R GRG RGR
Sbjct: 77 --DMLRNAPMFRSRGTR----GRGVGLARGR 101
>gi|156848641|ref|XP_001647202.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
gi|156117886|gb|EDO19344.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
Length = 100
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL GETY G LV+ + MN+ L++V T D K RM ++RGS IK+ +PD +
Sbjct: 19 LELSTGETYRGKLVDSEDNMNVQLQDVTVTGVDS-KVSRMDHVFVRGSHIKFFVVPDLLK 77
Query: 63 DMVKEDQVQRTRQRDSNRGGR 83
+ ++ +++ RG R
Sbjct: 78 NAPLFNKGPQSKPPPPIRGPR 98
>gi|331242127|ref|XP_003333710.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312700|gb|EFP89291.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 131
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ VELK G+ Y G L + + +NI+L+++ T RDG + ++ + YIRG MI+ +PD
Sbjct: 20 ITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDG-RVTQLDQVYIRGPMIRLYVVPDM 78
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ Q +R + GRG RGR
Sbjct: 79 L-------QNAPMFKRGTGVKGRGIGTARGRA 103
>gi|6323176|ref|NP_013248.1| Smd3p [Saccharomyces cerevisiae S288c]
gi|1173457|sp|P43321.1|SMD3_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|807056|gb|AAB32821.1| Smd3 protein, snRNP protein Smd3=D core small nuclear
ribonucleoprotein [Saccharomyces cerevisiae, BJ3434,
Peptide, 101 aa]
gi|1262307|gb|AAB82381.1| Smd3p: Small nuclear ribonucleoprotein D3 homolog [Saccharomyces
cerevisiae]
gi|1360574|emb|CAA97719.1| SMD3 [Saccharomyces cerevisiae]
gi|151941309|gb|EDN59687.1| Sm D3 [Saccharomyces cerevisiae YJM789]
gi|190406176|gb|EDV09443.1| small nuclear ribonucleoprotein Sm D3 [Saccharomyces cerevisiae
RM11-1a]
gi|256273010|gb|EEU07972.1| Smd3p [Saccharomyces cerevisiae JAY291]
gi|259148134|emb|CAY81383.1| Smd3p [Saccharomyces cerevisiae EC1118]
gi|285813562|tpg|DAA09458.1| TPA: Smd3p [Saccharomyces cerevisiae S288c]
gi|323303905|gb|EGA57686.1| Smd3p [Saccharomyces cerevisiae FostersB]
gi|323308144|gb|EGA61397.1| Smd3p [Saccharomyces cerevisiae FostersO]
gi|323332570|gb|EGA73978.1| Smd3p [Saccharomyces cerevisiae AWRI796]
gi|323336667|gb|EGA77933.1| Smd3p [Saccharomyces cerevisiae Vin13]
gi|323353994|gb|EGA85847.1| Smd3p [Saccharomyces cerevisiae VL3]
gi|349579868|dbj|GAA25029.1| K7_Smd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764414|gb|EHN05938.1| Smd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297664|gb|EIW08763.1| Smd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 101
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G TY G LV + MN+ LR+VI T G M + ++RGS IK++ +PD
Sbjct: 21 LELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFVRGSQIKFIVVPD 76
>gi|307192021|gb|EFN75405.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 142
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAP 124
>gi|21555384|gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L ++ T++DG K ++ +IRGS ++++ IPD +
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDIL- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
++ D+ G+ S GRG MRG
Sbjct: 80 -----KHAPMFKRLDARIKGKSSSLGVGRGRAAMRG 110
>gi|367005821|ref|XP_003687642.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
gi|357525947|emb|CCE65208.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
Length = 197
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICT-----SRDGD-KFWRMPECYIRGSMIKY 54
M +ELKNG T G L N D+WMN+ L V+ + DG + + + Y+RG+ IKY
Sbjct: 15 MFIELKNGTTIQGTLTNVDNWMNLTLSNVVQVDNSEPNEDGKVEKITLEQIYLRGTHIKY 74
Query: 55 LRIPDEIIDMV 65
+ + D+II+ V
Sbjct: 75 INLQDDIIENV 85
>gi|119174174|ref|XP_001239448.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|258569991|ref|XP_002543799.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|303314089|ref|XP_003067053.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237904069|gb|EEP78470.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|240106721|gb|EER24908.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037285|gb|EFW19222.1| small nuclear ribonucleoprotein Sm D3 [Coccidioides posadasii str.
Silveira]
gi|392869636|gb|EAS28151.2| small nuclear ribonucleoprotein Sm D3 [Coccidioides immitis RS]
Length = 116
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
DM++ + RTR QR GRG RGR N RG R
Sbjct: 80 DMLRNAPMFRTRGQR-----GRGVGLARGRATVNRARGQR 114
>gi|45270956|gb|AAS56859.1| YLR147C [Saccharomyces cerevisiae]
Length = 101
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G TY G LV + MN+ LR+VI T G M + ++RGS IK++ +PD
Sbjct: 21 LELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFVRGSQIKFIVVPD 76
>gi|212538165|ref|XP_002149238.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|242807429|ref|XP_002484954.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
gi|210068980|gb|EEA23071.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|218715579|gb|EED15001.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 116
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 24/109 (22%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNR 111
DM++ + RTR QRGRG RG K T+NR
Sbjct: 80 DMLRNAPMFRTR------------GQRGRGVGLARG-------KATVNR 109
>gi|332028142|gb|EGI68193.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 141
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-QVGQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAP 124
>gi|307185014|gb|EFN71243.1| Small nuclear ribonucleoprotein Sm D3 [Camponotus floridanus]
Length = 142
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-QVGQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAP 124
>gi|332028955|gb|EGI68973.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 142
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-QVGQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAP 124
>gi|347841024|emb|CCD55596.1| hypothetical protein [Botryotinia fuckeliana]
Length = 117
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITTGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
DM++ + R+R N GRG RGR + AP+
Sbjct: 77 DMLRNAPMFRSR----NTRGRGVGLARGRATVSRARASGRGAPR 116
>gi|19112491|ref|NP_595699.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe 972h-]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5689996|emb|CAB52041.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe]
Length = 97
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL+NG TY G L+ + MN +R++ T+RDG + + + YIRGS I++L +PD
Sbjct: 18 MELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYIRGSHIRFLIVPD 73
>gi|50288171|ref|XP_446514.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525822|emb|CAG59441.1| unnamed protein product [Candida glabrata]
Length = 172
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-------ICTSRDGDKFWRMPECYIRGSMIK 53
M +ELKNG+ G L N D+WMN+ L V T+ K + E Y+RG IK
Sbjct: 15 MRIELKNGDIVEGELTNVDNWMNLTLANVNEYKGSENNTNLPQVKVVKSKEIYVRGVYIK 74
Query: 54 YLRIPDEIIDMVKE 67
Y+ + D+II+ VK+
Sbjct: 75 YITLQDDIIEKVKQ 88
>gi|384251125|gb|EIE24603.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 124
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VELK+GETY G L + N+ L++V T++DG + + ++RGS ++++ IPD
Sbjct: 22 ITVELKSGETYRGELAEAEDSWNVQLKQVTATAKDG-RVSHLEHIFVRGSRVRFVIIPD 79
>gi|328866082|gb|EGG14468.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 170
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELKNGE Y G L+ + MN L+ V T+RDG K ++ + YIRGS I+++ +PD
Sbjct: 20 IELKNGEMYRGTLMQSEDNMNCKLKIVTMTARDG-KQSQLEQIYIRGSKIRFIILPD 75
>gi|154299390|ref|XP_001550114.1| hypothetical protein BC1G_10957 [Botryotinia fuckeliana B05.10]
Length = 117
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITTGQVYRGKLLGAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
DM++ + R+R N GRG RGR + AP+
Sbjct: 77 DMLRNAPMFRSR----NTRGRGVGLARGRATVSRARASGRGAPR 116
>gi|320165991|gb|EFW42890.1| small nuclear ribonucleoprotein Sm D3 [Capsaspora owczarzaki ATCC
30864]
Length = 135
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +ELK E Y G L + MN L ++ TSRDG + R+ + YIRGS +++ +P
Sbjct: 18 VTIELKTSEVYRGKLFQVEDNMNCQLEDITFTSRDG-QVSRLQQVYIRGSKVRFFIVP-- 74
Query: 61 IIDMVKEDQV-QRTRQRDSNRGGR 83
DM++ V +T + ++ GG+
Sbjct: 75 --DMIRHSPVFAKTSAQRAHLGGK 96
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE + G++ + MN+ L EV +RDG + + + Y+RGS I+++ IPD
Sbjct: 20 VELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDG-RPMSLEQVYLRGSQIRFVVIPD 75
>gi|110758613|ref|XP_001120143.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]
gi|380017261|ref|XP_003692578.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Apis florea]
gi|380017263|ref|XP_003692579.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 2
[Apis florea]
Length = 142
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEV-QLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAP 124
>gi|241955335|ref|XP_002420388.1| small nuclear ribonucleoprotein, putative; snRNP core protein,
putative [Candida dubliniensis CD36]
gi|223643730|emb|CAX41466.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 106
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G L+ + MN++L E T K M + +IRGSMI+++ +PD
Sbjct: 20 IELVNGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQVFIRGSMIRFISVPD 76
>gi|168011639|ref|XP_001758510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168011861|ref|XP_001758621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690120|gb|EDQ76488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690231|gb|EDQ76599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L+ C+ N L + T++DG K ++ +IRGS ++Y+ IPD
Sbjct: 22 VELKSGEVYRGSLIECEDNWNSQLESITYTAKDG-KVSQLEHVFIRGSKVRYMIIPD 77
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELKNGE Y G L+ + MN ++ + T++DG + +M CY+RGS ++++ +PD
Sbjct: 20 VELKNGELYRGTLIESEDNMNCRMKNITVTAKDG-RNSQMEYCYVRGSKVRFIILPD 75
>gi|18394883|ref|NP_564119.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis thaliana]
gi|15724292|gb|AAL06539.1|AF412086_1 At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|332191869|gb|AEE29990.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 131
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L ++ T++DG K ++ +IRGS ++++ IPD +
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDIL- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
++ D+ G+ S GRG MRG
Sbjct: 80 -----KHAPMFKRLDARIKGKSSSLGVGRGRGAMRG 110
>gi|50545379|ref|XP_500227.1| YALI0A19030p [Yarrowia lipolytica]
gi|49646092|emb|CAG84160.1| YALI0A19030p [Yarrowia lipolytica CLIB122]
Length = 105
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VEL +G TY G L+ + MN+ +R+V T+R G + + + YIRGS +++ IP+
Sbjct: 21 VELTSGHTYRGKLIEAEDNMNVQIRDVTVTAR-GGRVSHLEQVYIRGSHVRFFSIPE 76
>gi|378726753|gb|EHY53212.1| small nuclear ribonucleoprotein D3 [Exophiala dermatitidis
NIH/UT8656]
Length = 116
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LELTSGQVYRGKLLEAEDNMNVQLKDITATARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + RTR GRG RGR N
Sbjct: 80 DMLRNAPMFRTRGIR----GRGVGLARGRATVN 108
>gi|145493031|ref|XP_001432512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399624|emb|CAK65115.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE + G++ + MN+ L EV +RDG + + + Y+RGS I+++ IPD
Sbjct: 20 VELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDG-RPMSLEQVYLRGSQIRFVVIPD 75
>gi|367016010|ref|XP_003682504.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
gi|359750166|emb|CCE93293.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
Length = 100
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G LV + MN+ LR+ T D K RM ++RGS I++ +PD
Sbjct: 19 LELTTGETYRGKLVESEDNMNVQLRDATVTGAD-SKVTRMNHVFVRGSQIRFFVVPD 74
>gi|296810002|ref|XP_002845339.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
gi|238842727|gb|EEQ32389.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
Length = 116
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +K+ +P
Sbjct: 23 ITLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVKFFIVP-- 79
Query: 61 IIDMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
DM++ + R+R QR GRG RGR N RG R
Sbjct: 80 --DMLRNAPMFRSRGQR-----GRGVGLARGRATVNRARGQR 114
>gi|68489557|ref|XP_711397.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|68489657|ref|XP_711350.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432646|gb|EAK92119.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432696|gb|EAK92167.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|238882554|gb|EEQ46192.1| small nuclear ribonucleoprotein Sm D3 [Candida albicans WO-1]
Length = 106
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G L+ + MN++L E T K M + +IRGSMI+++ +PD
Sbjct: 20 IELINGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQVFIRGSMIRFISVPD 76
>gi|315044655|ref|XP_003171703.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|327297404|ref|XP_003233396.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|311344046|gb|EFR03249.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|326464702|gb|EGD90155.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|326472436|gb|EGD96445.1| pre-mRNA splicing factor [Trichophyton tonsurans CBS 112818]
gi|326481659|gb|EGE05669.1| small nuclear ribonucleoprotein D3 polypeptide [Trichophyton
equinum CBS 127.97]
Length = 116
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +K+ +P
Sbjct: 25 LEITSGHVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVKFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
DM++ + R+R QR GRG RGR N RG R
Sbjct: 80 DMLRNAPMFRSRGQR-----GRGVGLARGRATVNRARGQR 114
>gi|380480731|emb|CCF42263.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 138
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +PD
Sbjct: 22 LEITSGQTYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVPD 77
>gi|403214951|emb|CCK69451.1| hypothetical protein KNAG_0C03440 [Kazachstania naganishii CBS
8797]
Length = 186
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 18/97 (18%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVI-CTSRD-GD-------KFWRMPECYIRGSM 51
M +ELKNGE G L N D+WMN+ L V +RD G+ + ++ E Y++G
Sbjct: 15 MSIELKNGEIIEGELNNVDNWMNLTLINVTEHKTRDFGEISAGKQVEMIKLQEIYLKGIY 74
Query: 52 IKYLRIPDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
IKY+R+ D+IID + RQ+ N G R G+N+
Sbjct: 75 IKYIRLQDDIIDNL--------RQK-INSGNRDGNNK 102
>gi|345560308|gb|EGX43433.1| hypothetical protein AOL_s00215g169 [Arthrobotrys oligospora ATCC
24927]
Length = 123
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 21 LELTSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 75
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R+R GRG RGR N
Sbjct: 76 DMLRNAPMFRSRAVR----GRGVGMARGRATVN 104
>gi|295658451|ref|XP_002789786.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|225682914|gb|EEH21198.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226282930|gb|EEH38496.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226290365|gb|EEH45849.1| small nuclear ribonucleoprotein Sm D3 [Paracoccidioides
brasiliensis Pb18]
gi|327350126|gb|EGE78983.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 116
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
DM++ + R+R QR GRG RGR N RG R
Sbjct: 80 DMLRNAPMFRSRGQR-----GRGVGLARGRATVNRARGQR 114
>gi|340729743|ref|XP_003403155.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
terrestris]
gi|350411432|ref|XP_003489349.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
impatiens]
Length = 142
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-REAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAP 124
>gi|255948872|ref|XP_002565203.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592220|emb|CAP98547.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425774880|gb|EKV13173.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum PHI26]
gi|425780976|gb|EKV18959.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum Pd1]
Length = 117
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 13/98 (13%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 IEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRG-GRGGSN------QRGRG 92
DM++ + RTR QR G RG + QRGRG
Sbjct: 80 DMLRNAPMFRTRGQRGRGVGLARGKATVQRARGQRGRG 117
>gi|383853962|ref|XP_003702491.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Megachile
rotundata]
Length = 142
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + + YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREV-ELENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-----NQRGRG-GHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG G N RG +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAP 124
>gi|444314147|ref|XP_004177731.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
gi|387510770|emb|CCH58212.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
Length = 100
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NGETY G LV + MN+ L++V+ T D K RM + ++RGS I++ +P
Sbjct: 19 LELINGETYKGRLVESEDNMNVQLQDVLVTGTD-SKQSRMDQVFVRGSHIRFFVLPS 74
>gi|366999829|ref|XP_003684650.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
gi|357522947|emb|CCE62216.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
Length = 100
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G LV+ + MN+ LR+V T + + RM + +IRGS I++ +PD
Sbjct: 19 LELSTGETYRGKLVDSEDNMNVQLRDVTHTGVNSE-VTRMDDVFIRGSQIRFFALPD 74
>gi|148909638|gb|ABR17910.1| unknown [Picea sitchensis]
Length = 133
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G+++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGNMIECEDNWNCQLEGITYTAKDG-KVSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+ D+ GRG S GRG
Sbjct: 77 DMLRNAPM--FRRLDARIKGRGSSLGVGRG 104
>gi|388516583|gb|AFK46353.1| unknown [Lotus japonicus]
Length = 132
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 77 DMLKNAPM--FKRLDARVKGKGASLGVGRG 104
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ VELKNG T NG L++C MN++L+ V D + IRG+ I+ + +PDE
Sbjct: 18 LTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATL-LQFINIRGNQIRQILLPDE 76
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
+ ID + V + +++ + + + + R G MRG
Sbjct: 77 LNIDSILAKSVTKIKKQGAGPSAKPATTNK-RAGGPMRG 114
>gi|159480580|ref|XP_001698360.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158282100|gb|EDP07853.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 127
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L + + MN L++V T RDG + ++ +IRGS +++ IPD
Sbjct: 25 VELKSGEMYRGELCDAEDNMNCQLKDVTATGRDG-RVTQLAHLFIRGSRVRFFIIPD 80
>gi|388502716|gb|AFK39424.1| unknown [Lotus japonicus]
Length = 133
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G+++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 24 VELKSGELYRGNMIECEDNWNCQLESITYTAKDG-KTSQLEHVFIRGSKVRFMVIP---- 78
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 79 DMLKNAPM--FKRLDAKIKGKGASLGVGRG 106
>gi|154286938|ref|XP_001544264.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407905|gb|EDN03446.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|225555382|gb|EEH03674.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus
G186AR]
gi|240273870|gb|EER37389.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325094696|gb|EGC48006.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus H88]
Length = 116
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEILSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
DM++ + R+R QR GRG RGR N RG R
Sbjct: 80 DMLRNAPMFRSRGQR-----GRGVGLARGRATVNRARGQR 114
>gi|239613701|gb|EEQ90688.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +PD +
Sbjct: 25 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVPDMLR 83
Query: 62 --IDMVKEDQVQRTR-QRDSNRGGRGGSNQRGRGGHN-MRGMR 100
I++ + R+R QR GRG RGR N RG R
Sbjct: 84 YGINITPNAPMFRSRGQR-----GRGVGLARGRATVNRARGQR 121
>gi|145510771|ref|XP_001441315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408561|emb|CAK73918.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE + G++ + MN+ L EV +RDG + + + Y+RGS I+++ IPD
Sbjct: 20 VELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDG-RPMSLEQVYLRGSQIRFVVIPD 75
>gi|358254548|dbj|GAA55787.1| small nuclear ribonucleoprotein D3 [Clonorchis sinensis]
Length = 715
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E NGE + G LV + MNI + ++I T+RDG + + + YIRGS I++L +P
Sbjct: 20 LETVNGEVFRGKLVEAEDNMNIQMADIILTARDG-RTSNLQQVYIRGSKIRFLILP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAP 105
DM+K + + R G G GRG + M +RA ++P
Sbjct: 75 DMLKNSPMLK---RPLGAKGLG----TGRGKNAM--IRAGDSP 108
>gi|255726920|ref|XP_002548386.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
gi|240134310|gb|EER33865.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
Length = 106
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G L+ + MN++L E T M + +IRGSMI+++ +PD
Sbjct: 20 IELTNGDTYRGKLLENEDNMNLSLYEATVTKGKSGSVEHMDQVFIRGSMIRFVSVPD 76
>gi|407923942|gb|EKG17004.1| hypothetical protein MPH_05830 [Macrophomina phaseolina MS6]
Length = 114
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LELTTGHVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN-MRGMRA 101
DM++ + R+R GRG RGR N RG R
Sbjct: 77 DMLRNAPMFRSRGTR----GRGVGLARGRATVNRARGARG 112
>gi|45200940|ref|NP_986510.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|44985710|gb|AAS54334.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|374109756|gb|AEY98661.1| FAGL157Cp [Ashbya gossypii FDAG1]
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G LV + MN LR+V T+R+G + M ++RGS +++ +PD
Sbjct: 21 LELTTGETYRGKLVGSEDNMNCQLRDVTATARNG-QVTHMDHVFVRGSHVRFFVVPD 76
>gi|440634941|gb|ELR04860.1| small nuclear ribonucleoprotein D3 [Geomyces destructans 20631-21]
Length = 117
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 22 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
DM++ + R+R GRG RGR + AP+
Sbjct: 77 DMLRNAPMFRSRGVK----GRGVGLARGRATVSRARASGRGAPR 116
>gi|67523101|ref|XP_659611.1| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4]
gi|40745683|gb|EAA64839.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487374|tpe|CBF86001.1| TPA: small nuclear ribonucleoprotein SmD3, putative
(AFU_orthologue; AFUA_4G10240) [Aspergillus nidulans
FGSC A4]
Length = 116
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRG-GRGGSN-QRGRG 92
DM++ + RTR QR G RG + QR RG
Sbjct: 80 DMLRNAPMFRTRGQRGRGVGLARGKATVQRARG 112
>gi|70993910|ref|XP_751802.1| small nuclear ribonucleoprotein SmD3 [Aspergillus fumigatus Af293]
gi|119500466|ref|XP_001266990.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|145258404|ref|XP_001402031.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus niger CBS
513.88]
gi|66849436|gb|EAL89764.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus Af293]
gi|119415155|gb|EAW25093.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|134074637|emb|CAK44670.1| unnamed protein product [Aspergillus niger]
gi|159125281|gb|EDP50398.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus A1163]
gi|350632459|gb|EHA20827.1| hypothetical protein ASPNIDRAFT_204683 [Aspergillus niger ATCC
1015]
gi|358370798|dbj|GAA87408.1| small nuclear ribonucleoprotein SmD3 [Aspergillus kawachii IFO
4308]
Length = 116
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +K+ +P
Sbjct: 25 LEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVKFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRG-GRGGSN-QRGRG 92
DM++ + R+R QR G RG + QR RG
Sbjct: 80 DMLRNAPMFRSRGQRGRGVGLARGKATVQRARG 112
>gi|339251454|ref|XP_003372749.1| putative LSM domain protein [Trichinella spiralis]
gi|316968905|gb|EFV53105.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++E GE + G L+ + MN N+ +V T RDG + +M + YIRGS I++L +P
Sbjct: 18 VMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDG-QVAQMEQVYIRGSKIRFLILP-- 74
Query: 61 IIDMVKEDQVQRT------RQRDSNRGGRGGSNQ---------RGRGGHNMRGMRANNAP 105
DM+K + RT + RG RGRG + RG R P
Sbjct: 75 --DMLKNAPMFRTMLKGVPKVPAPPRGKAAAFKSKMFCHFKGGRGRGVFSGRGFRGRAVP 132
Query: 106 K 106
+
Sbjct: 133 R 133
>gi|254584500|ref|XP_002497818.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
gi|238940711|emb|CAR28885.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
Length = 100
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G LV + MN+ LR+V T D + RM ++RGS +++ +PD
Sbjct: 19 LELTTGETYRGKLVESEDNMNVQLRDVTVTGVDS-QVTRMDHVFVRGSHVRFFVVPD 74
>gi|414876857|tpg|DAA53988.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 113
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 42 MPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQR 76
MPECYIRG+ IKYLR+PDE+ID V+E+ + R
Sbjct: 1 MPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDR 35
>gi|363751767|ref|XP_003646100.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889735|gb|AET39283.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G LV + MN LR+V T+R+G + M +IRGS +++ +PD
Sbjct: 21 LELTTGETYRGKLVESEDNMNCQLRDVTATARNG-QVTHMDHVFIRGSHVRFFVVPD 76
>gi|401840421|gb|EJT43250.1| SMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 99
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G TY G LV + MN+ LR+V T G M + ++RGS IK++ +PD
Sbjct: 19 LELTTGATYRGKLVESEDSMNVQLRDVTATEPHG-AVTHMDQIFVRGSQIKFIVVPD 74
>gi|313234834|emb|CBY24778.1| unnamed protein product [Oikopleura dioica]
gi|313246057|emb|CBY35020.1| unnamed protein product [Oikopleura dioica]
Length = 99
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L ++ T ++ + C+IRGS+++Y+R+P E
Sbjct: 17 VELKNDLAITGTLHSVDQYLNIKLNDIFVTEQEKYPHLLSVKNCFIRGSVVRYVRLPAEE 76
Query: 62 IDMVKEDQVQRTRQRDSNR 80
ID R ++ +SNR
Sbjct: 77 IDHQLLQDTAR-KEAESNR 94
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G LV C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSLVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|357519697|ref|XP_003630137.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|355524159|gb|AET04613.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|388503694|gb|AFK39913.1| unknown [Medicago truncatula]
Length = 131
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G+++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGNMIECEDNWNCQLESITYTAKDG-KTSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 77 DMLKNAPM--FKRLDARIKGKGASLGVGRG 104
>gi|351721470|ref|NP_001237722.1| uncharacterized protein LOC100305856 [Glycine max]
gi|356525557|ref|XP_003531391.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Glycine max]
gi|255626793|gb|ACU13741.1| unknown [Glycine max]
Length = 131
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 77 DMLKNAPM--FKRLDARIKGKGASLGVGRG 104
>gi|255539216|ref|XP_002510673.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223551374|gb|EEF52860.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 131
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGSMVECEDNWNCQLESITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>gi|453087211|gb|EMF15252.1| Sm-like ribonucleo protein, partial [Mycosphaerella populorum
SO2202]
Length = 115
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VE+ +G+TY G L+ + MN+ L + T RDG + + YIRGS ++ +P
Sbjct: 22 VEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDG-RVTHLDRVYIRGSHVRLFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R+R N GRG RGR N
Sbjct: 77 DMLRNAPMFRSR----NARGRGVGLARGRATVN 105
>gi|339251460|ref|XP_003372752.1| putative LSM domain protein [Trichinella spiralis]
gi|316968894|gb|EFV53095.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++E GE + G L+ + MN N+ +V T RDG + +M + YIRGS I++L +PD
Sbjct: 18 VMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDG-QVTQMDQVYIRGSKIRFLILPDM 76
Query: 61 I--IDMVKEDQVQRTRQRDSNRGGRGGSNQ---------RGRGGHNMRGMRANNAPK 106
+ M K + RG RGRG + RG R ++A +
Sbjct: 77 LKNAPMFKTMLKGVPKVPAPPRGKAAAFKSKMFCHFEGGRGRGVFSSRGFRGSSAAR 133
>gi|268534544|ref|XP_002632403.1| C. briggsae CBR-SNR-1 protein [Caenorhabditis briggsae]
Length = 136
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G L+ + MN L E I T RDG + ++ +IRG+ I+++ +PD +
Sbjct: 21 LETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDG-RSHQLENVFIRGNKIRFMILPDMLK 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ + R Q+ + G GG +QRGRG
Sbjct: 80 NAPMFKNIGRA-QKGAIGMGLGGLDQRGRG 108
>gi|224065689|ref|XP_002301922.1| predicted protein [Populus trichocarpa]
gi|222843648|gb|EEE81195.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGSMVECEDNWNCQLESITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G L+ + MN L E I T RDG + ++ +IRG+ I+++ +PD +
Sbjct: 21 LETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDG-RSHQLENVFIRGNKIRFMILPDMLK 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ + R Q+ + G GG +QRGRG
Sbjct: 80 NAPMFKNIGRA-QKGAIGMGLGGLDQRGRG 108
>gi|449512675|ref|XP_004164112.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 77 DMLKNAPM--FKRLDARIKGKGASLGVGRG 104
>gi|290983277|ref|XP_002674355.1| predicted protein [Naegleria gruberi]
gi|284087945|gb|EFC41611.1| predicted protein [Naegleria gruberi]
Length = 134
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E K+GE Y G L+ + MN+ L +V T R+G + M YIRGS I+Y +PD
Sbjct: 22 LETKSGELYRGKLIEAEDSMNVQLVDVTVTHRNGQQ-SAMNTVYIRGSKIRYFVLPD 77
>gi|15223010|ref|NP_177757.1| snRNP core protein SMD3 [Arabidopsis thaliana]
gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|332197701|gb|AEE35822.1| snRNP core protein SMD3 [Arabidopsis thaliana]
Length = 128
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G ++ C+ N L + T++DG K ++ +IRGS++++L IPD
Sbjct: 22 VEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSLVRFLVIPD 77
>gi|401411081|ref|XP_003884988.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
gi|325119407|emb|CBZ54960.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
Length = 132
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G L N + MN L+ V T RDG + + + YIRGS +K++ PD
Sbjct: 21 VEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDG-RVVSLEQVYIRGSQVKFIVFPD 76
>gi|333656534|gb|AEF68170.1| Sm-D3-like protein [Physarum polycephalum]
Length = 134
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK GE Y G L+ + MN L + T+RDG + + Y+RGS I++L +PD
Sbjct: 20 IELKTGEVYRGQLIESEDNMNCQLGNITLTARDG-RISNLEHAYVRGSKIRFLILPD 75
>gi|326428074|gb|EGD73644.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 112
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T + DK+ M C+IRGS+I+Y+++
Sbjct: 32 VVVELKNDLSIQGTLTSVDQFLNIKLDDI--TVGNVDKYAHMVSVKNCFIRGSVIRYIQL 89
Query: 58 PDEIID 63
P E +D
Sbjct: 90 PPEHVD 95
>gi|237829847|ref|XP_002364221.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211961885|gb|EEA97080.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221487294|gb|EEE25526.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221507086|gb|EEE32690.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 131
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G L N + MN L+ V T RDG + + + YIRGS +K++ PD
Sbjct: 21 VEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDG-RVVSLEQVYIRGSQVKFIVFPD 76
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G LV C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSLVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G LV C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSLVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|66812912|ref|XP_640635.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74855297|sp|Q54TF6.1|LSM2_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm2
gi|60468648|gb|EAL66651.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 117
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFW-RMPECYIRGSMIKYLRIPD 59
+ VELKN + G L + D ++NI L+++ D + + C+IRGS+++Y+ +P
Sbjct: 15 ITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPA 74
Query: 60 EIID---MVKEDQVQRTRQRDSNRGGRGGSNQRG 90
E +D + +++ Q+ N+ + +NQ+
Sbjct: 75 EDVDVETLQDHSRLEAREQKKQNKQHQEQTNQKS 108
>gi|121707652|ref|XP_001271900.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
gi|119400048|gb|EAW10474.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
Length = 136
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +K+ +PD
Sbjct: 23 VTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVKFFIVPD 80
>gi|414865765|tpg|DAA44322.1| TPA: hypothetical protein ZEAMMB73_746512 [Zea mays]
Length = 126
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G LV C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSLVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|156365662|ref|XP_001626763.1| predicted protein [Nematostella vectensis]
gi|156213651|gb|EDO34663.1| predicted protein [Nematostella vectensis]
Length = 95
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + +G L + D ++N+ L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VIVELKNDLSVHGTLDSVDQFLNLKLTDIDVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P E +D
Sbjct: 73 PSEEVD 78
>gi|91084331|ref|XP_972583.1| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]
Length = 137
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI-- 61
E GE Y G L+ + MN + ++ T RDG + ++ YIRGS I++L +PD +
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RVAQLENVYIRGSKIRFLILPDMLKN 79
Query: 62 IDMVKED----------------QVQRTRQRDSN---RGGRGGSNQR-GRGGHNMRG 98
M K+ Q R R R +N RGGRGG+ Q G+G RG
Sbjct: 80 APMFKKQTKAGTAGRGKSAILRAQAARGRGRGANPAVRGGRGGAWQAPGQGAAAGRG 136
>gi|303273780|ref|XP_003056242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462326|gb|EEH59618.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 122
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELKNGETY G L+ + N L + T RDG + ++ YIRGS I++L IPD
Sbjct: 26 IELKNGETYRGTLLESEDNWNCQLEGITQTGRDG-RVNQLEHAYIRGSKIRFLVIPD 81
>gi|340374852|ref|XP_003385951.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Amphimedon queenslandica]
Length = 112
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + +G L + D ++NI L ++ + D DK+ M C+IRGS+I+Y+++
Sbjct: 16 VIVELKNDLSIHGTLHSVDQYLNIKLTDI--SIPDPDKYPHMLSVKNCFIRGSVIRYVQL 73
Query: 58 PDEIID 63
P E +D
Sbjct: 74 PAEEVD 79
>gi|115725270|ref|XP_001200318.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
gi|115896565|ref|XP_001200071.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
Length = 124
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL+N + G++V+ D +MN+ + +V+ + DG+K M +I+ S+++Y++IPD+ I
Sbjct: 31 VELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEK-THMDSIFIQASLVRYVQIPDD-I 88
Query: 63 DMVK 66
+MVK
Sbjct: 89 NMVK 92
>gi|50307679|ref|XP_453819.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642953|emb|CAH00915.1| KLLA0D17160p [Kluyveromyces lactis]
Length = 100
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+ Y G LV + MN LR+VI T +G K RM + +IRGS IK + +PD
Sbjct: 19 LELNNGDMYRGKLVENEDNMNCQLRDVIFTQANG-KMTRMDDVFIRGSNIKLVVVPD 74
>gi|449455595|ref|XP_004145538.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS + ++ IP
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVSFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G S GRG
Sbjct: 77 DMLKNAPM--FKRLDARIKGKGASLGVGRG 104
>gi|397641451|gb|EJK74654.1| hypothetical protein THAOC_03654 [Thalassiosira oceanica]
Length = 90
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 LKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+K+GE Y G L+N + MN+ L EV+ T R+G + + Y+RGS I+++ +PD
Sbjct: 1 MKSGEIYRGLLLNAEDTMNMTLSEVVRTGRNG-QVTKHSTVYLRGSGIRFIALPD 54
>gi|116780936|gb|ABK21888.1| unknown [Picea sitchensis]
Length = 133
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G+++ C+ N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 22 VELKSGELYRGNMIECEDNWNCQLEGITYTAKDG-KVSQLEHVFIRGSKVRFMVIP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM++ + R+ D+ G+G S GRG
Sbjct: 77 DMLRNAPM--FRRLDARIKGKGSSIGVGRG 104
>gi|313228903|emb|CBY18055.1| unnamed protein product [Oikopleura dioica]
Length = 124
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE + G LV + MNI +++V T R+G ++ YIRG+ IK++ +P +
Sbjct: 21 ETSTGEVFRGKLVEAEEHMNIQMQDVTATYRNGSTA-QLANIYIRGTQIKFMILP----E 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + R+ +G + S
Sbjct: 76 MLKNAPMLKVATRNQAQGQKASS 98
>gi|223975955|gb|ACN32165.1| unknown [Zea mays]
gi|413935154|gb|AFW69705.1| hypothetical protein ZEAMMB73_559735 [Zea mays]
Length = 125
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD +
Sbjct: 22 VELKTGEVYRGSMVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPDMLK 80
Query: 63 DMVKEDQVQ-RTRQRDSNRG-GRG 84
+ +++ R R + S G GRG
Sbjct: 81 NAPMFKRLEARIRGKGSAVGVGRG 104
>gi|224083270|ref|XP_002306975.1| predicted protein [Populus trichocarpa]
gi|222856424|gb|EEE93971.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGGMVECEDNWNCQLESITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>gi|226472944|emb|CAX71158.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 147
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E +GE + G LV + MN+++ ++I TSRDG + + + YIRGS I++L +P
Sbjct: 20 LETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDG-RTSNLQQVYIRGSKIRFLILP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
DM+K + + Q G G N R G RG
Sbjct: 75 DMLKNSPMLKRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 17 VELKNGSIVNGTITSVSPLMNVALRTVKYTPKSRDTVT-LDSMTVRGSTIRYIILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSN 87
+D + D + + + RG +
Sbjct: 76 LDTLLIDDAPKPKNKARKEADRGAAT 101
>gi|115492327|ref|XP_001210791.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|169771623|ref|XP_001820281.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae RIB40]
gi|238485796|ref|XP_002374136.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|83768140|dbj|BAE58279.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|114197651|gb|EAU39351.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|220699015|gb|EED55354.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|391871729|gb|EIT80886.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae 3.042]
Length = 116
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 79
Query: 63 DMVKEDQVQRTR-QRDSNRG-GRGGSN-QRGRG 92
DM++ + R+R QR G RG + QR RG
Sbjct: 80 DMLRNAPMFRSRGQRGRGVGLARGKATVQRARG 112
>gi|405976315|gb|EKC40827.1| Small nuclear ribonucleoprotein Sm D3 [Crassostrea gigas]
Length = 131
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G LV + MN + + T RDG + ++ Y+RGS I++L +PD + +
Sbjct: 21 ETTTGEVYRGKLVEAEDNMNCQMSAITVTYRDG-RVAQLENVYLRGSKIRFLILPDMLKN 79
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
+VQ G+GGS RG+
Sbjct: 80 APMFKRVQ----------GKGGSANRGKSA 99
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSMVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
Length = 135
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G L+ C+ N L + T++DG K ++ ++RGS ++++ IP
Sbjct: 22 VELKSGELYRGTLIECEDNWNCQLENITYTAKDG-KVSQLEHVFVRGSKVRFMIIP---- 76
Query: 63 DMVKEDQV-QRTRQRDSNRGGRGGSNQRGRG 92
DM+K + +R + +G G RGR
Sbjct: 77 DMLKNAPMFKRLEAKIKGKGSAGIGVGRGRA 107
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELK+G+ Y G L + + MN L V T RDG K + +CY+RGS I++ +PD +
Sbjct: 42 IELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDG-KPVSLEQCYLRGSQIRFCILPDMLK 100
Query: 63 DMVKEDQVQRTRQRDSNRGGRG 84
+ + R S G G
Sbjct: 101 NAPMFKLAANAKNRASVLGAAG 122
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSMVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|56756683|gb|AAW26514.1| SJCHGC04758 protein [Schistosoma japonicum]
gi|226469480|emb|CAX76570.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469482|emb|CAX76571.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469484|emb|CAX76572.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469486|emb|CAX76573.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469488|emb|CAX76574.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469490|emb|CAX76575.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469492|emb|CAX76576.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469494|emb|CAX76577.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469496|emb|CAX76578.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226472942|emb|CAX71157.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 130
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E +GE + G LV + MN+++ ++I TSRDG + + + YIRGS I++L +P
Sbjct: 20 LETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDG-RTSNLQQVYIRGSKIRFLILP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
DM+K + + Q G G N R G RG
Sbjct: 75 DMLKNSPMLKRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|452822235|gb|EME29256.1| small nuclear ribonucleoprotein D3 [Galdieria sulphuraria]
Length = 125
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VE K+G+ Y G L + + MN L++V CT RDG K ++RGS I++ +PD
Sbjct: 18 VTVETKSGDLYRGTLYDAEDNMNCQLKKVTCTGRDG-KITPFEHVFLRGSKIRFFIVPD 75
>gi|406867417|gb|EKD20455.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 115
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +PD
Sbjct: 22 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVPD 77
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGAMVECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|256083677|ref|XP_002578067.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|68165953|gb|AAY87930.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|353230790|emb|CCD77207.1| putative small nuclear ribonucleoprotein SM-D3 [Schistosoma
mansoni]
Length = 130
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E +GE + G LV + MN+++ ++I TSRDG + + + YIRGS I++L +P
Sbjct: 20 LETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDG-RTSNLQQVYIRGSKIRFLILP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
DM+K + + Q G G N R G RG
Sbjct: 75 DMLKNSPMLKRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|412993679|emb|CCO14190.1| small nuclear ribonucleoprotein LSM2 [Bathycoccus prasinos]
Length = 94
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP---ECYIRGSMIKYLRIPD 59
VELKN G LV+ D ++NI L V + D +K+ M +C++RGS+++Y++ P+
Sbjct: 17 VELKNDLEIRGTLVSVDQYLNIKLESV--SVLDEEKYPHMKSVRDCFVRGSVVRYVQPPE 74
Query: 60 EIIDM 64
E +D+
Sbjct: 75 ESVDV 79
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELK+G+ Y G L + + MN L V T RDG K + +CY+RGS I++ +PD +
Sbjct: 20 IELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDG-KPVSLEQCYLRGSQIRFCILPDMLK 78
Query: 63 DMVKEDQVQRTRQRDSNRGGRG 84
+ + R S G G
Sbjct: 79 NAPMFKLAANAKNRASVLGAAG 100
>gi|156402297|ref|XP_001639527.1| predicted protein [Nematostella vectensis]
gi|156226656|gb|EDO47464.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E NGE Y G L+ + MN + + T+RDG + ++ + ++RGS I++L +PD +
Sbjct: 20 LETLNGEVYRGKLIEAEDNMNCQMSNITVTARDG-RVSQLEQVFVRGSKIRFLILPDMLK 78
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGS 86
+ ++ + + GRG S
Sbjct: 79 NAPMFKKMTQKGSSGTGAAGRGKS 102
>gi|396081027|gb|AFN82646.1| U6 snRNA associated Sm-like protein [Encephalitozoon romaleae
SJ-2008]
Length = 87
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKN + G L CD MN++L+ V DG + + ECY++G+ IK +++ +I+
Sbjct: 17 LELKNNDHLRGLLYKCDMAMNLHLKSVTIQKEDGSSIF-INECYLKGTSIKLVKLESKIL 75
Query: 63 DMVKEDQV 70
KE+ V
Sbjct: 76 LEQKEEAV 83
>gi|225428263|ref|XP_002282385.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]
gi|297744494|emb|CBI37756.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>gi|261193182|ref|XP_002622997.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
gi|239589132|gb|EEQ71775.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
Length = 124
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +PD
Sbjct: 25 LEITSGQVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVPD 80
>gi|344301770|gb|EGW32075.1| hypothetical protein SPAPADRAFT_138952 [Spathaspora passalidarum
NRRL Y-27907]
Length = 103
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTS-RDGDKFWRMPECYIRGSMIKYLRIPD 59
VEL G+TY G L+ + MN++L +V+ T + GD + M + ++RGSMI+++ +PD
Sbjct: 21 VELTTGDTYRGKLLENEDNMNLSLYDVVITKGKTGDTTY-MNQVFVRGSMIRFISVPD 77
>gi|224082027|ref|XP_002198423.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VEL++ G + + D +MN+ L EV T R G ++ E ++ G I+Y+ IPDE+
Sbjct: 31 VELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQG-AVSQLDELFVTGRNIRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E+Q+Q
Sbjct: 90 IRATIEEQLQ 99
>gi|115443639|ref|NP_001045599.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|41052905|dbj|BAD07817.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|41053239|dbj|BAD08200.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|113535130|dbj|BAF07513.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|215692366|dbj|BAG87786.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692586|dbj|BAG88006.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737277|dbj|BAG96206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189864|gb|EEC72291.1| hypothetical protein OsI_05466 [Oryza sativa Indica Group]
gi|222621997|gb|EEE56129.1| hypothetical protein OsJ_05002 [Oryza sativa Japonica Group]
Length = 132
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSMVECEDNWNCQLDNITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|115451821|ref|NP_001049511.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|108707095|gb|ABF94890.1| Small nuclear ribonucleoprotein Sm D3, putative, expressed [Oryza
sativa Japonica Group]
gi|113547982|dbj|BAF11425.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|215686515|dbj|BAG87776.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765251|dbj|BAG86948.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768316|dbj|BAH00545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 132
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGAMVECEDNWNCQLDNITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|125978707|ref|XP_001353386.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|195160603|ref|XP_002021164.1| GL25187 [Drosophila persimilis]
gi|54642144|gb|EAL30893.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|194118277|gb|EDW40320.1| GL25187 [Drosophila persimilis]
Length = 95
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P E +D
Sbjct: 73 PGEEVD 78
>gi|321473278|gb|EFX84246.1| hypothetical protein DAPPUDRAFT_209723 [Daphnia pulex]
Length = 95
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISIT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P E +D
Sbjct: 73 PPEEVD 78
>gi|359491835|ref|XP_002270532.2| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Vitis
vinifera]
gi|297745546|emb|CBI40711.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G+++ C+ N L + T +DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGNMIECEDNWNCQLESITFTGKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>gi|67476256|ref|XP_653731.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56470719|gb|EAL48353.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449709025|gb|EMD48372.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 111
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +E+K GETY G +V + MN LR+V T++DG + R +IRG+ ++++ +P+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQ-SRTEYIFIRGNQVRFVVLPE 75
>gi|307192020|gb|EFN75404.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 143
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS-------NQRGRGGHNMRGMRANNAP 105
M+K + +R + S GRG S RGRG + R +AP
Sbjct: 76 MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQQHQRNKGTGSAP 125
>gi|325182501|emb|CCA16956.1| 6 snRNAassociated Smlike protein putative [Albugo laibachii Nc14]
Length = 94
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++N+ L V D + M C+IRGS+I+Y++IP +
Sbjct: 17 VELKNDVALMGTLHSVDQYLNMKLMGVSVVESDKYPQLMNMKNCFIRGSVIRYVQIPAQE 76
Query: 62 IDMVKEDQVQRTRQRDSN 79
+D D +Q +R++N
Sbjct: 77 VD---TDLLQDAARREAN 91
>gi|167378504|ref|XP_001734822.1| small nuclear ribonucleoprotein Sm D3 [Entamoeba dispar SAW760]
gi|165903473|gb|EDR29003.1| small nuclear ribonucleoprotein Sm D3, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +E+K GETY G +V + MN LR+V T++DG + R +IRG+ ++++ +P+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQ-SRTEYIFIRGNQVRFVVLPE 75
>gi|407038001|gb|EKE38889.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 111
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +E+K GETY G +V + MN LR+V T++DG + R +IRG+ ++++ +P+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQ-SRTEYIFIRGNQVRFVVLPE 75
>gi|348519431|ref|XP_003447234.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oreochromis niloticus]
gi|348519433|ref|XP_003447235.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oreochromis niloticus]
Length = 140
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
V+L+N T G +VN D +MNI L +V+ R G + ++ + +I G I+Y+ IPD +
Sbjct: 49 VDLRNESTARGRVVNVDAFMNIRLEDVLYRDRRG-QLTQLQDLFITGRNIRYVHIPDH-M 106
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGG 85
D++K + Q + R N G GG
Sbjct: 107 DIMKTIESQLAKIHRVRNFGSEGG 130
>gi|357145745|ref|XP_003573751.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Brachypodium distachyon]
Length = 134
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G ++ C+ N + + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGSMIECEDNWNCQIENITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|302796635|ref|XP_002980079.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
gi|300152306|gb|EFJ18949.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
Length = 95
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L+ C+ N L + T++DG K ++ ++RGS ++++ IPD
Sbjct: 22 VELKSGELYRGTLIECEDNWNCQLENITYTAKDG-KVSQLEHVFVRGSKVRFMIIPD 77
>gi|403213468|emb|CCK67970.1| hypothetical protein KNAG_0A02810 [Kazachstania naganishii CBS
8797]
Length = 100
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL GETY G L+ + MN+ L +V T DG + M ++RGS +++ +PD
Sbjct: 18 LELHTGETYRGRLIGSEDNMNVQLGDVTVTKVDGSR-TTMEHVFVRGSQVRFFTLPD 73
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G Y G L + + NI ++++ T+ DG K + YIRG+M++++ +P
Sbjct: 21 VELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDG-KQSHLENVYIRGNMLRFIIVP---- 75
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+++ + + R + GRG + RGR
Sbjct: 76 DMLQQAPMFK-RIGPNGMKGRGIGSARGRA 104
>gi|17542052|ref|NP_503027.1| Protein SNR-1 [Caenorhabditis elegans]
gi|21542463|sp|Q17348.2|SMD3_CAEEL RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5832794|emb|CAB55132.1| Protein SNR-1 [Caenorhabditis elegans]
Length = 136
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G L + MN L E + T RDG + ++ +IRG+ I+++ +PD +
Sbjct: 21 LETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMILPDMLK 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ + R Q+ + G GG +QRGRG
Sbjct: 80 NAPMFKNIGRA-QKGAIGMGLGGLDQRGRG 108
>gi|303388597|ref|XP_003072532.1| U6 snRNA associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303301673|gb|ADM11172.1| U6 snRNA associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 88
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKN + G L CD MN++L+ V DG + + ECY++G+ IK +++ +I+
Sbjct: 17 LELKNNDHLRGLLYKCDMAMNLHLKSVTIQKEDGSSIF-INECYLKGTSIKLVKLESKIL 75
Query: 63 DMVKEDQVQRTR 74
+E+ V +
Sbjct: 76 LEQREESVSSNK 87
>gi|224082029|ref|XP_002198421.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VEL++ G + + D +MN+ L EV T R G ++ E ++ G I+Y+ IPDE+
Sbjct: 31 VELRDESAAAGRVTSVDAFMNVRLAEVTFTDRRG-AVSQLDELFVTGRNIRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E+Q+Q
Sbjct: 90 IRATIEEQLQ 99
>gi|328351139|emb|CCA37539.1| Calcium-binding mitochondrial carrier protein SCaMC-1-B
[Komagataella pastoris CBS 7435]
Length = 521
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIR 48
EL +GE+Y G LV + MNI L++V T++DG KF R P+ +R
Sbjct: 21 ELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGKKFSRTPQSSMR 65
>gi|328771463|gb|EGF81503.1| hypothetical protein BATDEDRAFT_10632 [Batrachochytrium
dendrobatidis JAM81]
Length = 111
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
+++ELKN G LV+ D ++N L + D ++F M C+IRGS+++Y+RI
Sbjct: 28 VIIELKNDLAIVGKLVSVDQFLNFKLDNI--RVEDEERFPHMMSVKNCFIRGSVVRYVRI 85
Query: 58 PDEIID-MVKEDQVQRTRQRDSNRGG 82
P +D + +D ++ ++ S G
Sbjct: 86 PASKVDTALLQDAARKEAEQQSGNGA 111
>gi|449273124|gb|EMC82732.1| U7 snRNA-associated Sm-like protein LSm10 [Columba livia]
Length = 123
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ T G + N D +MN+ L EV T R G + E ++ G ++Y+ IPDE+
Sbjct: 31 VDLRDESTATGRVTNVDAFMNVRLAEVTYTDRQG-AVSHLDELFVTGRNVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 IRATIERQLQ 99
>gi|406603808|emb|CCH44729.1| putative U6 snRNA-associated Sm-like protein [Wickerhamomyces
ciferrii]
Length = 178
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
LVELK+GET NG L D+ MN+ L +VI TS +KYLR+P+E+
Sbjct: 37 LVELKSGETINGVLTEIDNLMNLTLTDVIETSPVSKD-------------VKYLRLPEEL 83
Query: 62 IDMVKEDQVQ 71
I +K+ +Q
Sbjct: 84 IGEIKQRNLQ 93
>gi|452845934|gb|EME47867.1| hypothetical protein DOTSEDRAFT_42182 [Dothistroma septosporum
NZE10]
Length = 115
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VE+ +G+TY G L+ + MN+ L + T RDG + + YIRGS ++ +P
Sbjct: 22 VEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDG-RVTHLDRVYIRGSHVRLFIVP---- 76
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R+R GRG RGR N
Sbjct: 77 DMLRNAPMFRSR----GTRGRGVGLARGRATVN 105
>gi|50759758|ref|XP_417768.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Gallus gallus]
Length = 123
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ T G + N D +MN+ L EV T R G+ ++ E ++ G ++Y+ IPDE+
Sbjct: 31 VDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGE-VSQLDEIFVTGRNVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 IRATIERQLQ 99
>gi|168003064|ref|XP_001754233.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694787|gb|EDQ81134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 98
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L+ C+ N L V T+ DG K ++ IRGS ++++ IPD
Sbjct: 22 VELKSGEAYRGSLIECEDNWNSQLESVTYTAMDG-KVSQLEHVSIRGSKVRFMIIPD 77
>gi|350410763|ref|XP_003489131.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Bombus
impatiens]
Length = 140
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 60 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 117
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 118 PGDEVDTQLLQDAARK 133
>gi|121543877|gb|ABM55603.1| LSM2-like protein [Maconellicoccus hirsutus]
Length = 96
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
+++ELKN + G L + D ++N+ L+EV T D +K M C+IRGS+++Y+++
Sbjct: 15 VIIELKNDLSMCGTLSSVDQYLNLKLKEV--TVNDTEKHPHMLSVSNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQRTRQRDSNR 80
P DE+ + +D + +++ R
Sbjct: 73 PADEVDTQLLQDATRNEAEKNVTR 96
>gi|412990430|emb|CCO19748.1| Small nuclear ribonucleoprotein Sm D3 [Bathycoccus prasinos]
Length = 131
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G LV + N L V T+RDG K + CY+RGS I+ + +PD
Sbjct: 51 VELKSGELYRGTLVEAEDNWNCQLTNVSHTARDG-KHSSLENCYLRGSKIRMVIVPD 106
>gi|387594121|gb|EIJ89145.1| hypothetical protein NEQG_00964 [Nematocida parisii ERTm3]
gi|387595679|gb|EIJ93302.1| hypothetical protein NEPG_01644 [Nematocida parisii ERTm1]
Length = 83
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+K+G Y G L CD WMNI+++ + + + + ECYI+GS IK + + +
Sbjct: 17 IEMKSGSVYTGTLHKCDLWMNIHMKNAVKNASE-----EIEECYIKGSAIKTVHCKKKHL 71
Query: 63 DMVKEDQVQRTR 74
M + Q ++T+
Sbjct: 72 SMQEILQKRKTK 83
>gi|125543063|gb|EAY89202.1| hypothetical protein OsI_10698 [Oryza sativa Indica Group]
gi|125585557|gb|EAZ26221.1| hypothetical protein OsJ_10089 [Oryza sativa Japonica Group]
Length = 134
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y G +V C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRGAMVECEDNWNCQLDNITFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|398407783|ref|XP_003855357.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici
IPO323]
gi|339475241|gb|EGP90333.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici
IPO323]
Length = 119
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VE+ +G+TY G L+ + MN+ L + T RDG + + YIRGS ++ +PD
Sbjct: 20 VTVEITSGQTYRGKLIEAEDNMNVQLENINVTQRDG-RVTHLDRVYIRGSHVRLFIVPD 77
>gi|242007296|ref|XP_002424477.1| Surfeit locus protein, putative [Pediculus humanus corporis]
gi|212507895|gb|EEB11739.1| Surfeit locus protein, putative [Pediculus humanus corporis]
Length = 401
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L E+ T D DK+ M C+IRGS+++Y+++
Sbjct: 321 VVVELKNDLSICGTLHSVDQYLNIKLTEISVT--DPDKYPHMLSIKNCFIRGSVVRYVQL 378
Query: 58 P-DEIIDMVKEDQVQRTRQRDS 78
P DE+ + +D ++ S
Sbjct: 379 PADEVDTQLLQDAARKEAASQS 400
>gi|145344044|ref|XP_001416549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576775|gb|ABO94842.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 95
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GETY G LV + N + +V RDG K +M YIRGS ++ + IPD
Sbjct: 22 VELKTGETYRGQLVESEDNWNCQMTDVTHVGRDG-KESKMEHVYIRGSKVRMMVIPD 77
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK G Y G L + + NI ++++ T+ DG K + YIRG+M++++ +P
Sbjct: 21 VELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDG-KQSHLENVYIRGNMLRFIIVP---- 75
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+++ + + R + GRG + RGR
Sbjct: 76 DMLQQAPMFK-RIGPNAMKGRGIGSARGRA 104
>gi|212538167|ref|XP_002149239.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|210068981|gb|EEA23072.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 26/109 (23%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ +G+ Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +P
Sbjct: 25 LEITSGQVYRGKLLEDN--MNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP---- 77
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNR 111
DM++ + RTR QRGRG RG K T+NR
Sbjct: 78 DMLRNAPMFRTR------------GQRGRGVGLARG-------KATVNR 107
>gi|448515433|ref|XP_003867337.1| Smd3 core snRNP protein [Candida orthopsilosis Co 90-125]
gi|380351676|emb|CCG21899.1| Smd3 core snRNP protein [Candida orthopsilosis]
Length = 106
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +EL NG+TY G L+ + MN +L +V T+ M + +IRGSMI+++ +PD
Sbjct: 18 ITIELTNGDTYRGKLLENEDNMNSSLFDVTITNGRNGSLKHMDQVFIRGSMIRFVSVPD 76
>gi|195012846|ref|XP_001983759.1| GH15400 [Drosophila grimshawi]
gi|193897241|gb|EDV96107.1| GH15400 [Drosophila grimshawi]
Length = 104
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 24 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 81
Query: 58 PDEIID 63
P + +D
Sbjct: 82 PGDEVD 87
>gi|345488169|ref|XP_001605095.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Nasonia
vitripennis]
Length = 95
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PGDEVD 78
>gi|443704446|gb|ELU01508.1| hypothetical protein CAPTEDRAFT_111414, partial [Capitella
teleta]
Length = 95
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 14 LVVELKNDLSICGTLHSVDQFLNIKLTDISVT--DPDKYPHMLSVKTCFIRGSVVRYVQL 71
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
P D+ +D+ R S QR
Sbjct: 72 P--------ADECDTQLLQDAARKEATQSKQR 95
>gi|195440762|ref|XP_002068209.1| GK10160 [Drosophila willistoni]
gi|194164294|gb|EDW79195.1| GK10160 [Drosophila willistoni]
Length = 106
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 26 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 83
Query: 58 PDEIID 63
P + +D
Sbjct: 84 PGDEVD 89
>gi|383863071|ref|XP_003707006.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Megachile
rotundata]
Length = 112
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 32 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 89
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 90 PGDEVDTQLLQDAARK 105
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G L + MN N+ V T RDG + + +IRG +I+++ +PD
Sbjct: 20 VELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDGS-ISTLEQVFIRGGLIRFVILPD 75
>gi|303273532|ref|XP_003056127.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462211|gb|EEH59503.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 92
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L+E + D ++ M C+IRGS+++Y+++P
Sbjct: 16 VELKNDLAITGLLRSVDQYLNIKLQETVVV--DEARYPHMSSVRSCFIRGSVVRYVQLPP 73
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +RD+ RG
Sbjct: 74 DAVDV---DILHDATRRDA-RGA 92
>gi|378756041|gb|EHY66066.1| hypothetical protein NERG_00762 [Nematocida sp. 1 ERTm2]
Length = 82
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VE+K+G Y G L CD WMNI+++ I ++G + + ECYI+GS IK + + +
Sbjct: 17 VEMKSGSIYTGMLYKCDLWMNIHIKNAI---KNGTE--EIEECYIKGSAIKAVHCKKKHL 71
Query: 63 DM 64
M
Sbjct: 72 SM 73
>gi|110760170|ref|XP_001120188.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Apis
mellifera]
gi|340719471|ref|XP_003398177.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Bombus
terrestris]
gi|380029303|ref|XP_003698316.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Apis
florea]
Length = 95
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PGDEVD 78
>gi|332019962|gb|EGI60422.1| U6 snRNA-associated Sm-like protein LSm2 [Acromyrmex echinatior]
Length = 96
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLYSVDQYLNIKLADISVT--DSEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIIDM 64
P + +D+
Sbjct: 73 PVDEVDI 79
>gi|297839503|ref|XP_002887633.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
gi|297333474|gb|EFH63892.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
Length = 129
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G ++ C+ N L + ++DG K ++ +IRGS+++++ IPD
Sbjct: 22 VEMKSGELYRGSMIECEDNWNCQLENITYKAKDG-KVSQLEHVFIRGSLVRFIVIPD 77
>gi|221127676|ref|XP_002162398.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Hydra
magnipapillata]
Length = 103
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + +G L + D ++NI L ++ T D +++ M C++RGS+++Y+++
Sbjct: 15 VIVELKNDLSISGVLDSVDQFLNIKLTDISVT--DTERYPHMMSVKNCFLRGSVVRYVQL 72
Query: 58 PDEIIDM 64
P E ID+
Sbjct: 73 PPEDIDV 79
>gi|307181671|gb|EFN69174.1| U6 snRNA-associated Sm-like protein LSm2 [Camponotus floridanus]
Length = 95
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 14 VVVELKNDLSICGTLYSVDQYLNIKLADISVT--DSEKYPHMLSVKNCFIRGSVVRYVQL 71
Query: 58 PDEIIDM 64
P + +D+
Sbjct: 72 PVDEVDI 78
>gi|401825621|ref|XP_003886905.1| U6 snRNA associated Sm-like protein [Encephalitozoon hellem ATCC
50504]
gi|392998062|gb|AFM97924.1| U6 snRNA associated Sm-like protein [Encephalitozoon hellem ATCC
50504]
Length = 87
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKN + G L CD MN++L+ DG + + ECY++G+ IK +++ +I+
Sbjct: 17 LELKNNDQLRGLLYKCDMAMNLHLKSATIQKEDGTSVF-INECYLKGTSIKLVKLESKIL 75
Query: 63 DMVKEDQV 70
KE+ V
Sbjct: 76 LEQKEEDV 83
>gi|348672729|gb|EGZ12549.1| hypothetical protein PHYSODRAFT_317573 [Phytophthora sojae]
Length = 99
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWR---MPECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L V + +GDKF + M C+IRGS I+Y++IP
Sbjct: 20 VELKNDVALMGVLDSVDQYLNIKLLNV--SVVEGDKFPQLMNMKNCFIRGSSIRYVQIPA 77
Query: 60 EIID 63
+D
Sbjct: 78 GEVD 81
>gi|195102462|ref|XP_001998083.1| GH23600 [Drosophila grimshawi]
gi|193905529|gb|EDW04396.1| GH23600 [Drosophila grimshawi]
Length = 94
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 14 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 71
Query: 58 PDEIID 63
P + +D
Sbjct: 72 PGDEVD 77
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 136
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +ELK GE Y G L + + MN + + T+RDG + + + YIRGS I+++ +PD
Sbjct: 18 VTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDG-RVTNLEQVYIRGSKIRFMILPD 75
>gi|21358381|ref|NP_648570.1| CG10418 [Drosophila melanogaster]
gi|195327103|ref|XP_002030261.1| GM25341 [Drosophila sechellia]
gi|195376259|ref|XP_002046914.1| GJ13149 [Drosophila virilis]
gi|195493810|ref|XP_002094573.1| GE21899 [Drosophila yakuba]
gi|195589798|ref|XP_002084636.1| GD14374 [Drosophila simulans]
gi|7294589|gb|AAF49929.1| CG10418 [Drosophila melanogaster]
gi|194119204|gb|EDW41247.1| GM25341 [Drosophila sechellia]
gi|194154072|gb|EDW69256.1| GJ13149 [Drosophila virilis]
gi|194180674|gb|EDW94285.1| GE21899 [Drosophila yakuba]
gi|194196645|gb|EDX10221.1| GD14374 [Drosophila simulans]
gi|220951570|gb|ACL88328.1| CG10418-PA [synthetic construct]
Length = 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PGDEVD 78
>gi|301093933|ref|XP_002997811.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
gi|262109897|gb|EEY67949.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
Length = 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWR---MPECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L V +GDKF + M C+IRGS I+Y++IP
Sbjct: 16 VELKNDVALMGVLDSVDQYLNIKLLNVSVV--EGDKFPQLMNMKNCFIRGSSIRYVQIPA 73
Query: 60 EIID 63
+D
Sbjct: 74 GEVD 77
>gi|322787518|gb|EFZ13606.1| hypothetical protein SINV_14465 [Solenopsis invicta]
Length = 115
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN ++ + T RDG + ++ YIRGS I++L +P D
Sbjct: 31 ETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 85
Query: 64 MVKEDQV-QRTRQRDSNRGGRGGS 86
M+K + +R + S GRG S
Sbjct: 86 MLKNAPMFKRPGGKGSGTAGRGKS 109
>gi|225714524|gb|ACO13108.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
Length = 138
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E NGE Y G L+ + MN + V T RDG ++ YIRGS I+++ +PD + +
Sbjct: 21 ETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPDMLKN 79
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS------NQRGRGGHNMRGMRANNA 104
+ R R GRG S RGRG G+ + A
Sbjct: 80 APMFKNMGRGRGSAPASAGRGKSAILREQAARGRGRAGPPGLPGSAA 126
>gi|238598211|ref|XP_002394549.1| hypothetical protein MPER_05548 [Moniliophthora perniciosa FA553]
gi|215463734|gb|EEB95479.1| hypothetical protein MPER_05548 [Moniliophthora perniciosa FA553]
Length = 180
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 20 HWMNINLREVICTSRDGDKFWRMPECYIR 48
H+MNI LREV T+ DGD+FW++ ECYIR
Sbjct: 4 HFMNITLREVYQTNPDGDRFWKLKECYIR 32
>gi|301099937|ref|XP_002899059.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104371|gb|EEY62423.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 134
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWR---MPECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L V +GDKF + M C+IRGS I+Y++IP
Sbjct: 55 VELKNDVALMGVLDSVDQYLNIKLLNVSVV--EGDKFPQLMNMKNCFIRGSSIRYVQIPA 112
Query: 60 EIID 63
+D
Sbjct: 113 GEVD 116
>gi|58393584|ref|XP_320178.2| AGAP012380-PA [Anopheles gambiae str. PEST]
gi|55234277|gb|EAA00211.2| AGAP012380-PA [Anopheles gambiae str. PEST]
Length = 143
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RVGNLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + + + GRG S
Sbjct: 76 MLKNAPMFKKQGAKTGTAGRGKS 98
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago
hordei]
Length = 134
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VELK G Y G L + + N+ +++V T+ DG K + YIRG+M++++ +PD
Sbjct: 19 ITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDG-KQSHLENIYIRGNMLRFIIVPD 76
>gi|417407887|gb|JAA50536.1| Putative snrnp core protein, partial [Desmodus rotundus]
Length = 127
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 47 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 104
Query: 58 PDEIID 63
P + +D
Sbjct: 105 PADEVD 110
>gi|145340671|ref|XP_001415444.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575667|gb|ABO93736.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 130
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
+ VELKN G LV+ D ++NI L T D ++ M C+IRGS+++Y+++
Sbjct: 52 VTVELKNDLAIAGTLVSVDQYLNIKLENTRVT--DEARYPHMRSVRNCFIRGSVVRYVQL 109
Query: 58 PDEIIDM 64
P+ +D+
Sbjct: 110 PEAAVDV 116
>gi|237843693|ref|XP_002371144.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii ME49]
gi|211968808|gb|EEB04004.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii ME49]
gi|221481638|gb|EEE20020.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 101
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
++VELKN G L + D ++NI L V + + C+IRGS ++Y+ +P
Sbjct: 17 IMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERCPHLLSVKNCFIRGSAVRYVHLPP 76
Query: 60 EIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+D+ Q+Q +R+S GSN R R
Sbjct: 77 SAVDV---SQLQDMCRRES-----AGSNDRDR 100
>gi|221504601|gb|EEE30274.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii VEG]
Length = 100
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
++VELKN G L + D ++NI L V + + C+IRGS ++Y+ +P
Sbjct: 16 IMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERCPHLLSVKNCFIRGSAVRYVHLPP 75
Query: 60 EIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+D+ Q+Q +R+S GSN R R
Sbjct: 76 SAVDV---SQLQDMCRRES-----AGSNDRDR 99
>gi|147822390|emb|CAN59901.1| hypothetical protein VITISV_002889 [Vitis vinifera]
Length = 116
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK+GE Y G ++ C+ N L + T++DG K ++ +IRGS + +L I
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSKVPWL-----IP 75
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
DM+K + ++ D+ G+G + GRG
Sbjct: 76 DMLKNAPM--FKRLDARVKGKGSALGVGRG 103
>gi|410730161|ref|XP_003671258.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
gi|401780078|emb|CCD26015.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
Length = 67
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRG 49
VEL GETY G L+ + MNI LR+VI T D K RM ++RG
Sbjct: 19 VELATGETYRGKLIESEDNMNIQLRDVIVTGTDS-KMTRMDHVFVRG 64
>gi|209732182|gb|ACI66960.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 128
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIGAEDNMNCQMSNITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|354547206|emb|CCE43940.1| hypothetical protein CPAR2_501650 [Candida parapsilosis]
Length = 106
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ +EL NG+TY G L+ + MN +L +V T+ M + ++RGSMI+++ +PD
Sbjct: 18 ITIELTNGDTYRGKLLENEDNMNASLFDVTITNGRNGSSKHMDQVFVRGSMIRFVSVPD 76
>gi|281201849|gb|EFA76057.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 351
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +EL+NG+ Y G L+ + MN + + T+++G K ++ + YIRGS I++ +P
Sbjct: 87 ITLELRNGDLYRGTLIESEDNMNCRMENITMTAKNG-KQTQIEQIYIRGSKIRFFILP-- 143
Query: 61 IIDMVKEDQV-QRTRQRDSNRG---GRGGSNQRGRGG 93
DM+K + +R R RG G G S R RGG
Sbjct: 144 --DMLKNAPMFKRIDGRTVLRGKSLGIGRSVGRARGG 178
>gi|405969386|gb|EKC34360.1| U6 snRNA-associated Sm-like protein LSm2, partial [Crassostrea
gigas]
Length = 96
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQFLNIKLTDITVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQRTRQRDSNR 80
P DE + +D ++ ++ R
Sbjct: 73 PADECDTQLLQDAARKEAAQNRQR 96
>gi|313220248|emb|CBY31107.1| unnamed protein product [Oikopleura dioica]
gi|313235868|emb|CBY11255.1| unnamed protein product [Oikopleura dioica]
Length = 162
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD--- 59
VE GE Y G L+ + MN+ LR+V T RDG + + +IRGS +++ +PD
Sbjct: 20 VESATGELYRGVLIEAEDNMNMQLRDVSATYRDG-RSAHLSNIFIRGSQVRFAILPDMLK 78
Query: 60 --EIIDMVKEDQVQRTRQRDSNRG 81
++++ K+ + R R + RG
Sbjct: 79 NAPMLNVDKKSKQPRGLGRGAFRG 102
>gi|146415963|ref|XP_001483951.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146391076|gb|EDK39234.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 106
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G+TY G L+ + MN++L +V+ T M + ++RGSMI+Y+ +P+
Sbjct: 20 LELVTGDTYRGKLLENEDNMNLSLYDVVVTKGRTGATTHMNQVFVRGSMIRYISVPE 76
>gi|350293601|gb|EGZ74686.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 236
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 1 MLVELKNGETYNGHLV-----------NCDHWMNINLREVICTSRDGDKFWRMPECYIRG 49
+ +E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRG
Sbjct: 129 VTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDITVTARDG-RVSHLEQVYIRG 187
Query: 50 SMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
S +++ +P DM++ + R+R N GRG RGR
Sbjct: 188 SHVRFFIVP----DMLRNAPMFRSR----NVRGRGVGLARGRA 222
>gi|238231831|ref|NP_001154102.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
gi|209734524|gb|ACI68131.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
gi|225704048|gb|ACO07870.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
Length = 128
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|194869802|ref|XP_001972524.1| GG15573 [Drosophila erecta]
gi|190654307|gb|EDV51550.1| GG15573 [Drosophila erecta]
Length = 112
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D DK+ M C+IRGS+++Y+++
Sbjct: 32 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIRGSVVRYVQL 89
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 90 PGDEVDTQLLQDAARK 105
>gi|336473142|gb|EGO61302.1| hypothetical protein NEUTE1DRAFT_107812 [Neurospora tetrasperma
FGSC 2508]
Length = 247
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 1 MLVELKNGETYNGHLV-----------NCDHWMNINLREVICTSRDGDKFWRMPECYIRG 49
+ +E+ +G+TY G L+ + MN+ L+++ T+RDG + + + YIRG
Sbjct: 140 VTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDITVTARDG-RVSHLEQVYIRG 198
Query: 50 SMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
S +++ +P DM++ + R+R N GRG RGR
Sbjct: 199 SHVRFFIVP----DMLRNAPMFRSR----NVRGRGVGLARGRA 233
>gi|313214383|emb|CBY42774.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE GE Y G L+ + MN+ LR+V T RDG + + +IRGS +++ +PD
Sbjct: 20 VESATGELYRGVLIEAEDNMNMQLRDVSATYRDG-RSAHLSNIFIRGSQVRFAILPD 75
>gi|346470701|gb|AEO35195.1| hypothetical protein [Amblyomma maculatum]
gi|427786045|gb|JAA58474.1| Putative u6 snrna-associated sm-like protein lsm2 [Rhipicephalus
pulchellus]
Length = 95
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPD 59
++VELKN + G L + D ++NI L ++ T +D + C+IRGS+++Y+++P
Sbjct: 15 VVVELKNDLSMCGTLHSVDQYLNIKLTDISVTEQDKYPHMLSVKNCFIRGSVVRYVQLPA 74
Query: 60 EIID 63
+ +D
Sbjct: 75 DEVD 78
>gi|401887212|gb|EJT51213.1| pre-mRNA splicing factor [Trichosporon asahii var. asahii CBS
2479]
Length = 200
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELK GE Y G L+ + +N+ L+++ T+RDG + ++ + YIRGSM L I I
Sbjct: 21 VELKTGEMYRGKLMEAEDSLNMALKDITVTARDG-RVSQLEQVYIRGSMEWALCIEIWAI 79
Query: 63 DMVK 66
D ++
Sbjct: 80 DTLR 83
>gi|195998846|ref|XP_002109291.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190587415|gb|EDV27457.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 106
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ + D +K+ M C+IRGS+++Y+ +
Sbjct: 15 VIVELKNDLSVCGILHSVDQYLNIKLVDI--SVPDTEKYPHMISVKNCFIRGSVVRYVHL 72
Query: 58 PDEIIDM 64
P E ID+
Sbjct: 73 PAEEIDV 79
>gi|432888006|ref|XP_004075020.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Oryzias latipes]
Length = 117
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD + +
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPDMLKN 79
Query: 64 MVKEDQVQRTRQ-RDSNRG------GRGGSNQRGRG 92
++ Q + RG +G + ++GRG
Sbjct: 80 APMLKSMKNKNQGSGAGRGKAAILKAQGAAKEKGRG 115
>gi|193601302|ref|XP_001946996.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Acyrthosiphon pisum]
Length = 94
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLVDISVT--DPEKYPHMASVRNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|260064054|ref|NP_001004073.1| LSM2 homolog, U6 small nuclear RNA associated isoform 1 [Rattus
norvegicus]
gi|46237602|emb|CAE83980.1| LSM2 homolog, U6 small nuclear RNA associated [S. cerevisiae]
[Rattus norvegicus]
gi|149028028|gb|EDL83479.1| rCG38360, isoform CRA_e [Rattus norvegicus]
Length = 131
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 51 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 108
Query: 58 PDEIID 63
P + +D
Sbjct: 109 PADEVD 114
>gi|229365986|gb|ACQ57973.1| U6 snRNA-associated Sm-like protein LSm2 [Anoplopoma fimbria]
Length = 95
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGALHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|395533886|ref|XP_003768980.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Sarcophilus
harrisii]
Length = 142
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 62 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 119
Query: 58 PDEIID 63
P + +D
Sbjct: 120 PADEVD 125
>gi|270001426|gb|EEZ97873.1| hypothetical protein TcasGA2_TC000255 [Tribolium castaneum]
Length = 95
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DTEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|410958854|ref|XP_003986029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Felis catus]
Length = 98
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 18 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 75
Query: 58 PDEIID 63
P + +D
Sbjct: 76 PADEVD 81
>gi|410920908|ref|XP_003973925.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Takifugu rubripes]
Length = 104
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 24 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 81
Query: 58 PDEIID 63
P + +D
Sbjct: 82 PADEVD 87
>gi|194223357|ref|XP_001491793.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Equus
caballus]
Length = 114
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 34 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 91
Query: 58 PDEIID 63
P + +D
Sbjct: 92 PADEVD 97
>gi|242013355|ref|XP_002427375.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus
humanus corporis]
gi|212511744|gb|EEB14637.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus
humanus corporis]
Length = 136
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + T RDG K ++ YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMVTCSVTYRDG-KVSQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + Q+ S GRG S
Sbjct: 76 MLKNAPMFKRVQKGSGGAGRGKS 98
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + D MN +L+ V T+R+ D + IRG+ I+Y+ +PD +
Sbjct: 17 IELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDP-TSLDSLSIRGNNIRYIVLPDALP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 76 LDTLLVDDAPKPKAR 90
>gi|221131194|ref|XP_002165640.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Hydra
magnipapillata]
Length = 130
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E GE Y G L+ + MN L + T+RDG K ++ + +IRGS I+++ +PD
Sbjct: 22 LETLTGEVYRGKLLEAEDNMNCQLTHITMTARDG-KVAQLEQIFIRGSKIRFVILPD 77
>gi|148227688|ref|NP_001079359.1| uncharacterized protein LOC379046 [Xenopus laevis]
gi|27371312|gb|AAH40973.1| MGC52856 protein [Xenopus laevis]
gi|133736997|gb|AAI33764.1| MGC52856 protein [Xenopus laevis]
Length = 126
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|149237821|ref|XP_001524787.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146451384|gb|EDK45640.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 106
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ NG+ Y G L+ + MN +L +V T+ M + +IRGSMI+++ +PD
Sbjct: 20 IEVNNGDVYRGKLLENEDNMNSSLYDVTITNGKNGSVKHMEQVFIRGSMIRFISVPD 76
>gi|61097894|ref|NP_571571.1| U6 snRNA-associated Sm-like protein LSm2 [Danio rerio]
gi|55715812|gb|AAH85441.1| Smx5 [Danio rerio]
gi|156229994|gb|AAI52151.1| Smx5 [Danio rerio]
gi|182891394|gb|AAI64435.1| Smx5 protein [Danio rerio]
Length = 95
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|332376959|gb|AEE63619.1| unknown [Dendroctonus ponderosae]
Length = 138
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN L ++ T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQLTQITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSN 87
M+K + + +Q + GRG S
Sbjct: 76 MLKNAPMFK-KQTKAGVAGRGKSG 98
>gi|354492832|ref|XP_003508548.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Cricetulus griseus]
Length = 122
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 42 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 99
Query: 58 PDEIID 63
P + +D
Sbjct: 100 PADEVD 105
>gi|47211785|emb|CAF93753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|348513729|ref|XP_003444394.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Oreochromis niloticus]
Length = 127
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|4759160|ref|NP_004166.1| small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gi|13385598|ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus]
gi|56119060|ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus]
gi|62859245|ref|NP_001017093.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|148230601|ref|NP_001084936.1| small nuclear ribonucleoprotein Sm D3 [Xenopus laevis]
gi|302563765|ref|NP_001180981.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|343478171|ref|NP_001230355.1| small nuclear ribonucleoprotein Sm D3 [Sus scrofa]
gi|73995845|ref|XP_849660.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Canis lupus
familiaris]
gi|109093572|ref|XP_001096170.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Macaca mulatta]
gi|109509970|ref|XP_001079870.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|126344584|ref|XP_001362481.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Monodelphis domestica]
gi|149632566|ref|XP_001509901.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Ornithorhynchus anatinus]
gi|149720126|ref|XP_001489110.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Equus
caballus]
gi|291412675|ref|XP_002722599.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3
[Oryctolagus cuniculus]
gi|296191500|ref|XP_002743645.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Callithrix
jacchus]
gi|297708452|ref|XP_002830980.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pongo
abelii]
gi|301779389|ref|XP_002925102.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Ailuropoda
melanoleuca]
gi|332263674|ref|XP_003280877.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nomascus
leucogenys]
gi|344294995|ref|XP_003419200.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Loxodonta
africana]
gi|348584590|ref|XP_003478055.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cavia
porcellus]
gi|392355294|ref|XP_003751996.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|395753126|ref|XP_003779546.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pongo
abelii]
gi|395753128|ref|XP_003779547.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 3 [Pongo
abelii]
gi|395861839|ref|XP_003803182.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Otolemur
garnettii]
gi|397469575|ref|XP_003806425.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Pan paniscus]
gi|410055702|ref|XP_003953897.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pan
troglodytes]
gi|410055704|ref|XP_003953898.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pan
troglodytes]
gi|410976969|ref|XP_003994885.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Felis catus]
gi|426247570|ref|XP_004017554.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Ovis aries]
gi|426393867|ref|XP_004063231.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Gorilla gorilla
gorilla]
gi|51338667|sp|P62318.1|SMD3_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|315583600|pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
gi|315583609|pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
gi|332639436|pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639443|pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639450|pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639460|pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639467|pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639474|pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639484|pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639491|pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639498|pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639508|pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639515|pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639522|pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|600750|gb|AAA57034.1| Sm D3 [Homo sapiens]
gi|12653375|gb|AAH00457.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo
sapiens]
gi|12837822|dbj|BAB23963.1| unnamed protein product [Mus musculus]
gi|12839911|dbj|BAB24705.1| unnamed protein product [Mus musculus]
gi|12859667|dbj|BAB31729.1| unnamed protein product [Mus musculus]
gi|13111955|gb|AAH03150.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo
sapiens]
gi|47122949|gb|AAH70616.1| MGC81359 protein [Xenopus laevis]
gi|47678697|emb|CAG30469.1| SNRPD3 [Homo sapiens]
gi|53130412|emb|CAG31535.1| hypothetical protein RCJMB04_7j2 [Gallus gallus]
gi|74227850|dbj|BAE35738.1| unnamed protein product [Mus musculus]
gi|89266931|emb|CAJ81806.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|90085617|dbj|BAE91549.1| unnamed protein product [Macaca fascicularis]
gi|109451504|emb|CAK54613.1| SNRPD3 [synthetic construct]
gi|109452100|emb|CAK54912.1| SNRPD3 [synthetic construct]
gi|119580074|gb|EAW59670.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo
sapiens]
gi|148699966|gb|EDL31913.1| small nuclear ribonucleoprotein D3, isoform CRA_b [Mus musculus]
gi|149043764|gb|EDL97215.1| rCG60635, isoform CRA_b [Rattus norvegicus]
gi|170285144|gb|AAI61305.1| hypothetical protein LOC549847 [Xenopus (Silurana) tropicalis]
gi|197129341|gb|ACH45839.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129342|gb|ACH45840.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129343|gb|ACH45841.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197692199|dbj|BAG70063.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|197692447|dbj|BAG70187.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|208965532|dbj|BAG72780.1| small nuclear ribonucleoprotein D3 polypeptide [synthetic
construct]
gi|296478296|tpg|DAA20411.1| TPA: small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos
taurus]
gi|355563528|gb|EHH20090.1| hypothetical protein EGK_02876 [Macaca mulatta]
gi|355784846|gb|EHH65697.1| hypothetical protein EGM_02515 [Macaca fascicularis]
gi|380815844|gb|AFE79796.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815846|gb|AFE79797.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815848|gb|AFE79798.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815850|gb|AFE79799.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815852|gb|AFE79800.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|383420997|gb|AFH33712.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|384940658|gb|AFI33934.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|387018114|gb|AFJ51175.1| Small nuclear ribonucleoprotein D3 polypeptide [Crotalus
adamanteus]
gi|410211528|gb|JAA02983.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264204|gb|JAA20068.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264206|gb|JAA20069.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410302836|gb|JAA30018.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|417395981|gb|JAA45024.1| Putative small nuclear ribonucleoprotein sm d3 [Desmodus
rotundus]
gi|432095017|gb|ELK26406.1| Small nuclear ribonucleoprotein Sm D3 [Myotis davidii]
gi|449281570|gb|EMC88617.1| Small nuclear ribonucleoprotein Sm D3 [Columba livia]
Length = 126
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|344307226|ref|XP_003422283.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Loxodonta
africana]
Length = 133
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 53 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 110
Query: 58 PDEIID 63
P + +D
Sbjct: 111 PADEVD 116
>gi|225706764|gb|ACO09228.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
gi|225707146|gb|ACO09419.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
Length = 127
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMANITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|431921560|gb|ELK18914.1| U6 snRNA-associated Sm-like protein LSm2 [Pteropus alecto]
Length = 127
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 47 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 104
Query: 58 PDEIID 63
P + +D
Sbjct: 105 PADEVD 110
>gi|260947028|ref|XP_002617811.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847683|gb|EEQ37147.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 106
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTS-RDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G+TY G L+ + MN++L +V T R G+ + M + ++RGSMI+++ +PD
Sbjct: 20 LELTTGDTYRGKLIENEDNMNLSLYDVTITKGRTGETSY-MNQVFVRGSMIRFVSVPD 76
>gi|62858431|ref|NP_001016402.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|163838653|ref|NP_001106211.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|60618387|gb|AAH90606.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|62871721|gb|AAH94397.1| Lsm2 protein [Xenopus laevis]
gi|89273744|emb|CAJ81423.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|226372864|gb|ACO52057.1| U6 snRNA-associated Sm-like protein LSm2 [Rana catesbeiana]
Length = 95
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|334323708|ref|XP_001376243.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Monodelphis domestica]
Length = 167
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 87 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 144
Query: 58 PDEIID 63
P + +D
Sbjct: 145 PADEVD 150
>gi|318103625|ref|NP_001188170.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
gi|432855577|ref|XP_004068255.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Oryzias
latipes]
gi|308323693|gb|ADO28982.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
Length = 95
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|344239170|gb|EGV95273.1| U6 snRNA-associated Sm-like protein LSm2 [Cricetulus griseus]
gi|351713156|gb|EHB16075.1| U6 snRNA-associated Sm-like protein LSm2, partial [Heterocephalus
glaber]
gi|440898787|gb|ELR50212.1| U6 snRNA-associated Sm-like protein LSm2, partial [Bos grunniens
mutus]
Length = 94
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 14 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 71
Query: 58 PDEIID 63
P + +D
Sbjct: 72 PADEVD 77
>gi|449302555|gb|EMC98564.1| hypothetical protein BAUCODRAFT_137738 [Baudoinia compniacensis
UAMH 10762]
Length = 116
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ VE+ +G+TY G L+ + MN L + T RDG + + YIRGS ++ +P
Sbjct: 20 VTVEIDSGQTYRGKLIEAEDNMNCQLENINVTQRDG-RVTHLDRVYIRGSHVRLFIVP-- 76
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
DM++ + R R +N+ GRG RGR N
Sbjct: 77 --DMLRNAPMFRQR---ANK-GRGVGLARGRATVN 105
>gi|302423008|ref|XP_003009334.1| pentatricopeptide repeat protein [Verticillium albo-atrum
VaMs.102]
gi|261352480|gb|EEY14908.1| pentatricopeptide repeat protein [Verticillium albo-atrum
VaMs.102]
Length = 710
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 22/57 (38%)
Query: 35 DGDKFWRMPECYIRGS----------------------MIKYLRIPDEIIDMVKEDQ 69
+GDKF ++PE Y++G+ IKYLR+PD+IID+VKE+Q
Sbjct: 2 EGDKFVKIPEVYVKGNNVRLHLFSSIRPSANARLIAGLQIKYLRVPDDIIDIVKENQ 58
>gi|255567664|ref|XP_002524811.1| Speckle-type POZ protein, putative [Ricinus communis]
gi|223535995|gb|EEF37654.1| Speckle-type POZ protein, putative [Ricinus communis]
Length = 500
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 424 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 481
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D+ D + +R++ RGG
Sbjct: 482 EGVDI---DLLHDATRREA-RGG 500
>gi|10863977|ref|NP_067000.1| U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|155372081|ref|NP_001094647.1| U6 snRNA-associated Sm-like protein LSm2 [Bos taurus]
gi|158533995|ref|NP_001103571.1| U6 snRNA-associated Sm-like protein LSm2 isoform 2 [Mus musculus]
gi|178056596|ref|NP_001116608.1| U6 snRNA-associated Sm-like protein LSm2 [Sus scrofa]
gi|226443174|ref|NP_001140070.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|260064052|ref|NP_001159394.1| LSM2 homolog, U6 small nuclear RNA associated isoform 2 [Rattus
norvegicus]
gi|386781369|ref|NP_001247614.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|73972304|ref|XP_532081.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Canis lupus
familiaris]
gi|291395796|ref|XP_002714328.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296197733|ref|XP_002746407.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Callithrix
jacchus]
gi|297677734|ref|XP_002816713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pongo
abelii]
gi|327286769|ref|XP_003228102.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Anolis
carolinensis]
gi|332246070|ref|XP_003272173.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nomascus
leucogenys]
gi|332823648|ref|XP_518362.3| PREDICTED: uncharacterized protein LOC462569 [Pan troglodytes]
gi|348576468|ref|XP_003474009.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Cavia
porcellus]
gi|395832028|ref|XP_003789080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Otolemur
garnettii]
gi|397523138|ref|XP_003831598.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pan
paniscus]
gi|402866510|ref|XP_003897424.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Papio
anubis]
gi|403307821|ref|XP_003944381.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Saimiri
boliviensis boliviensis]
gi|426250528|ref|XP_004018987.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Ovis aries]
gi|10720079|sp|Q9Y333.1|LSM2_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=Small nuclear
ribonuclear protein D homolog; AltName: Full=snRNP core
Sm-like protein Sm-x5
gi|52783102|sp|O35900.1|LSM2_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=snRNP core Sm-like
protein Sm-x5
gi|5919145|gb|AAD56226.1|AF182288_1 U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|12239339|gb|AAG49438.1|AF136977_1 snRNP core SM-like protein SM-x5 [Homo sapiens]
gi|16118494|gb|AAL14450.1|AF397035_3 small ribonuclear protein G7b [Mus musculus]
gi|16118503|gb|AAL14458.1|AF397036_3 small ribonuclear protein G7b [Mus musculus]
gi|2463648|gb|AAB72037.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|4529895|gb|AAD21818.1| snRNP [Homo sapiens]
gi|5701852|emb|CAB52190.1| G7b protein [Homo sapiens]
gi|11225487|gb|AAG33023.1| SMX5-like protein [Homo sapiens]
gi|14327936|gb|AAH09192.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|15277249|dbj|BAB63302.1| small nuclear ribonuclear protein D homolog [Homo sapiens]
gi|15679962|gb|AAH14288.1| Lsm2 protein [Mus musculus]
gi|49457288|emb|CAG46943.1| LSM2 [Homo sapiens]
gi|49457310|emb|CAG46954.1| LSM2 [Homo sapiens]
gi|74195973|dbj|BAE30544.1| unnamed protein product [Mus musculus]
gi|119623930|gb|EAX03525.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123988106|gb|ABM83829.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|124000059|gb|ABM87538.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|147225158|emb|CAN13335.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Sus scrofa]
gi|148694757|gb|EDL26704.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149028025|gb|EDL83476.1| rCG38360, isoform CRA_b [Rattus norvegicus]
gi|151557081|gb|AAI50006.1| LSM2 protein [Bos taurus]
gi|208968015|dbj|BAG73846.1| U6 snRNA-associated Sm-like protein LSm2 [synthetic construct]
gi|221221672|gb|ACM09497.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|296474271|tpg|DAA16386.1| TPA: LSM2 homolog, U6 small nuclear RNA associated [Bos taurus]
gi|355561546|gb|EHH18178.1| hypothetical protein EGK_14728 [Macaca mulatta]
gi|355762482|gb|EHH61980.1| hypothetical protein EGM_20136 [Macaca fascicularis]
gi|380785271|gb|AFE64511.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|383411271|gb|AFH28849.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|384943564|gb|AFI35387.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|387019545|gb|AFJ51890.1| U6 snRNA-associated Sm-like protein LSm2 [Crotalus adamanteus]
gi|410206872|gb|JAA00655.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410253898|gb|JAA14916.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410290348|gb|JAA23774.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410329143|gb|JAA33518.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 95
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|91077956|ref|XP_967320.1| PREDICTED: similar to smx5 [Tribolium castaneum]
Length = 99
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 19 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DTEKYPHMLSVKNCFIRGSVVRYVQL 76
Query: 58 PDEIID 63
P + +D
Sbjct: 77 PADEVD 82
>gi|225716266|gb|ACO13979.1| Small nuclear ribonucleoprotein Sm D3 [Esox lucius]
Length = 127
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMANITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|170038404|ref|XP_001847040.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
gi|167882083|gb|EDS45466.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
Length = 155
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQLTVTFRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + + S GRG S
Sbjct: 76 MLKNAPMFKKQGAKSGTAGRGKS 98
>gi|357628758|gb|EHJ77961.1| hypothetical protein KGM_13005 [Danaus plexippus]
Length = 95
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ + D DK+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLSDI--SVIDPDKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|301792294|ref|XP_002931116.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Ailuropoda melanoleuca]
Length = 98
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 18 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 75
Query: 58 PDEIID 63
P + +D
Sbjct: 76 PADEVD 81
>gi|291230978|ref|XP_002735441.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 96
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQFLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|126133653|ref|XP_001383351.1| hypothetical protein PICST_13887 [Scheffersomyces stipitis CBS
6054]
gi|126095500|gb|ABN65322.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 97
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G+TY G L+ + MN++L +V+ T M + ++RGSMI+++ +PD
Sbjct: 18 LELTTGDTYRGKLLENEDNMNLSLYDVVITKGRTGATSYMNQVFVRGSMIRFITVPD 74
>gi|307109545|gb|EFN57783.1| hypothetical protein CHLNCDRAFT_143127 [Chlorella variabilis]
Length = 126
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G + + N+ L V T RDG K M +IRG ++++ +PD
Sbjct: 29 VELKSGEIYRGEMYEAEDNWNVQLSNVQATGRDG-KVTHMEHIFIRGGRVRFVIVPD 84
>gi|389739973|gb|EIM81165.1| U6 snRNA-associated Sm-like protein LSm2 [Stereum hirsutum
FP-91666 SS1]
Length = 96
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L ++ + + C+IRGS+++Y+++P E
Sbjct: 17 VELKNDLSITGTLKSVDQFLNIRLDQIEVMDPARHPHMMAVKNCFIRGSVVRYVQLPSEH 76
Query: 62 ID-MVKEDQVQRTRQRDSNRGGR 83
+D + ED TR+ +N+ R
Sbjct: 77 VDTQLLEDA---TRRESANQAKR 96
>gi|294653209|gb|ADF28512.1| small nuclear robonucleoprotein SMD3 [Pelinobius muticus]
Length = 122
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+E GE Y G LV + MN + +V T RDG + ++ YIRGS I++L +PD +
Sbjct: 20 LETNTGEIYRGRLVEAEDNMNCQMADVTVTYRDG-RVGQLENIYIRGSKIRFLILPDTL 77
>gi|440901202|gb|ELR52187.1| Small nuclear ribonucleoprotein Sm D3, partial [Bos grunniens
mutus]
Length = 107
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|388583883|gb|EIM24184.1| Sm-like ribonucleo protein, partial [Wallemia sebi CBS 633.66]
Length = 115
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC-----YIRGSMIKYLRI 57
+ELKNG +G ++NCD MN +LR V +R+ +P C IRG+ I+Y+ +
Sbjct: 10 IELKNGSVVHGTMINCDPSMNAHLRSVKLITRN------LPACNLDTISIRGNNIRYVIL 63
Query: 58 PDE------IIDMVKEDQVQRTRQRDSNRG 81
PD ++D + +V + ++ R
Sbjct: 64 PDSLPLDTLLVDDAPQPKVNKRKEAIKERA 93
>gi|357631535|gb|EHJ79005.1| hypothetical protein KGM_15381 [Danaus plexippus]
Length = 130
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + V T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + RQ + GRG S
Sbjct: 76 MLKNAPMFK-RQGNKPTAGRGKS 97
>gi|444708595|gb|ELW49650.1| Small nuclear ribonucleoprotein Sm D3 [Tupaia chinensis]
Length = 112
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|209732980|gb|ACI67359.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMANITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|119623931|gb|EAX03526.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 113
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 33 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 90
Query: 58 PDEIID 63
P + +D
Sbjct: 91 PADEVD 96
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNG G +V DH MN LR V T ++ D + IRG+ I++ +PD
Sbjct: 15 VIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDPVS-LETLSIRGNNIRHYILPDS 73
Query: 61 I-ID--MVKEDQVQRTRQRDS 78
+ +D +++E + T++R++
Sbjct: 74 LPLDSLLIEEVPKKSTKKRET 94
>gi|392921511|ref|NP_001256511.1| Protein GUT-2, isoform a [Caenorhabditis elegans]
gi|58081790|emb|CAB03328.3| Protein GUT-2, isoform a [Caenorhabditis elegans]
Length = 97
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D ++F M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PSDQVD 78
>gi|410932149|ref|XP_003979456.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Takifugu rubripes]
gi|281343886|gb|EFB19470.1| hypothetical protein PANDA_014546 [Ailuropoda melanoleuca]
Length = 106
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|387019547|gb|AFJ51891.1| U7 snRNP-specific Sm-like protein LSM10 [Crotalus adamanteus]
Length = 125
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VEL++ G +VN D +MN+ L E T R G R+ + +I G ++Y+ IPDE+
Sbjct: 31 VELRDESVAVGRIVNVDAFMNVRLGEATFTDRHGCA-CRLQDLFITGRNVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 IRATIEQQLQ 99
>gi|308321147|gb|ADO27727.1| small nuclear ribonucleoprotein sm d3 [Ictalurus furcatus]
Length = 128
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VEL++ + G ++N D +MN+ L +V T R G K ++ + +I G ++Y+ IP+E+
Sbjct: 31 VELRDESSAKGSVINVDAFMNVRLEKVTYTDRRG-KESKLDDLFINGRNVRYIHIPEEV 88
>gi|168021867|ref|XP_001763462.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685255|gb|EDQ71651.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 121
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD- 59
+LVEL+N + G L +CD+ MN+ +++ +G + ++P ++RGS I+++ IPD
Sbjct: 25 LLVELRNDLSIRGILDDCDNAMNVIIKDATVEDVEGVQ-KQLPLVFLRGSNIRFVHIPDN 83
Query: 60 -EIIDMVKE 67
+I+ +V+E
Sbjct: 84 VDIMKLVEE 92
>gi|326676382|ref|XP_003200562.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Danio
rerio]
Length = 120
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
V+L++ T G ++N D +MNI L V+ R G K M + +I G ++Y+ IPD+ I
Sbjct: 31 VDLRDESTARGRVINVDAFMNIRLENVLYRDRRGRK-SSMDDLFITGRNVRYVHIPDQ-I 88
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGGSNQ 88
++++ + Q ++ R N G GG +
Sbjct: 89 NIIETIEAQLSKIHRVRNFGAGGGRKE 115
>gi|115497280|ref|NP_001069947.1| small nuclear ribonucleoprotein Sm D3 [Bos taurus]
gi|86437979|gb|AAI12525.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos taurus]
Length = 125
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG--LAQLEQVYIRGSKIRFLILPD 74
>gi|281210502|gb|EFA84668.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKF-WRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L++V D + + C+IRGS+++Y+ +P
Sbjct: 17 VELKNDLSITGLLQSVDQFLNIKLKDVRVEEEDKYPYMLSVKNCFIRGSVVRYVHLPASE 76
Query: 62 IDMVKEDQVQRTRQRDSNRGGR 83
+D+ R R+ + +
Sbjct: 77 VDVETLQDHSRLEAREQKKAQQ 98
>gi|11138539|gb|AAG31434.1|AF204157_1 snRNP core protein SMX5d [Mus musculus]
Length = 119
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 39 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 96
Query: 58 PDEIID 63
P + +D
Sbjct: 97 PADEVD 102
>gi|209731578|gb|ACI66658.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMANITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|351701822|gb|EHB04741.1| Small nuclear ribonucleoprotein Sm D3, partial [Heterocephalus
glaber]
Length = 136
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNRNE 113
M+K + ++ ++ N+G GRG + + + A P++ E
Sbjct: 76 MLKNAPMLKS-MKNKNQGSGA-----GRGKAAILKAQGSTALHPSVQTAE 119
>gi|194747125|ref|XP_001956003.1| GF24817 [Drosophila ananassae]
gi|190623285|gb|EDV38809.1| GF24817 [Drosophila ananassae]
Length = 98
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 18 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 75
Query: 58 PDEIID 63
P + +D
Sbjct: 76 PGDEVD 81
>gi|241742042|ref|XP_002414155.1| conserved hypothetical protein [Ixodes scapularis]
gi|215508009|gb|EEC17463.1| conserved hypothetical protein [Ixodes scapularis]
gi|442754033|gb|JAA69176.1| Putative snrnp core protein [Ixodes ricinus]
Length = 96
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDINVT--DTEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQRTRQRDS 78
P DE+ + +D ++ S
Sbjct: 73 PADEVDTQLLQDAARKEASSQS 94
>gi|198426293|ref|XP_002128585.1| PREDICTED: similar to LSM2 homolog, U6 small nuclear RNA
associated [Ciona intestinalis]
Length = 95
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C++RGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFVRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|395526532|ref|XP_003765416.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Sarcophilus
harrisii]
Length = 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L EV T R G + ++ + ++ G ++Y+ IPDE+
Sbjct: 31 VDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQV-QLDDLFVTGRNVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQRT-RQRDSNRGGRG 84
I E Q+Q R R+ G+G
Sbjct: 90 ITATIEQQLQAIHRVRNFGSEGKG 113
>gi|157118346|ref|XP_001653182.1| small nuclear ribonucleoprotein Sm D1, putative [Aedes aegypti]
gi|158292631|ref|XP_314020.2| AGAP005136-PA [Anopheles gambiae str. PEST]
gi|108883305|gb|EAT47530.1| AAEL001363-PA [Aedes aegypti]
gi|157017082|gb|EAA09471.3| AGAP005136-PA [Anopheles gambiae str. PEST]
Length = 95
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PGDEVD 78
>gi|348513603|ref|XP_003444331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Oreochromis niloticus]
Length = 121
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 41 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 98
Query: 58 PDEIID 63
P + +D
Sbjct: 99 PADEVD 104
>gi|41054297|ref|NP_956054.1| small nuclear ribonucleoprotein D3 polypeptide, like [Danio
rerio]
gi|28278495|gb|AAH45929.1| Small nuclear ribonucleoprotein D3 polypeptide, like [Danio
rerio]
gi|182889668|gb|AAI65492.1| Snrpd3l protein [Danio rerio]
Length = 128
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVSQLEQVYIRGSKIRFLILPD 75
>gi|13994221|ref|NP_085100.1| U6 snRNA-associated Sm-like protein LSm2 isoform 1 [Mus musculus]
gi|11138517|gb|AAG31423.1|AF204146_1 snRNP core protein SMX5 [Mus musculus]
gi|11138519|gb|AAG31424.1|AF204147_1 snRNP core protein SMX5 [Mus musculus]
gi|11138521|gb|AAG31425.1|AF204148_1 snRNP core protein SMX5 [Mus musculus]
gi|11138523|gb|AAG31426.1|AF204149_1 snRNP core protein SMX5 [Mus musculus]
gi|11138525|gb|AAG31427.1|AF204150_1 snRNP core protein SMX5 [Mus musculus]
gi|11138527|gb|AAG31428.1|AF204151_1 snRNP core protein SMX5 [Mus musculus]
gi|11138529|gb|AAG31429.1|AF204152_1 snRNP core protein SMX5 [Mus musculus]
gi|16118493|gb|AAL14449.1|AF397035_2 G7b alternative form [Mus musculus]
gi|16118502|gb|AAL14457.1|AF397036_2 G7b alternative form [Mus musculus]
gi|2463649|gb|AAB72038.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|3986753|gb|AAC84150.1| smRNP [Mus musculus]
gi|3986775|gb|AAC84171.1| smRNP [Mus musculus]
gi|29436560|gb|AAH49543.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|148694756|gb|EDL26703.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 131
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 51 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 108
Query: 58 PDEIID 63
P + +D
Sbjct: 109 PADEVD 114
>gi|195126148|ref|XP_002007536.1| GI13004 [Drosophila mojavensis]
gi|193919145|gb|EDW18012.1| GI13004 [Drosophila mojavensis]
Length = 95
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PGDEVD 78
>gi|328873860|gb|EGG22226.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 99
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKF-WRMPECYIRGSMIKYLRIPDEI 61
VELKN G+L + D ++NI LR++ + + C+IRGS+++Y+ +P +
Sbjct: 17 VELKNDLAITGYLQSVDQFLNIKLRDIRVEEEQKYPYMLSVKNCFIRGSVVRYVHLPADD 76
Query: 62 IDM 64
+D+
Sbjct: 77 VDV 79
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 17 VELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVA-LDTMTVRGSTIRYIILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSN 87
+D + D + + + R GG++
Sbjct: 76 LDTLLIDDAPKPKNK--ARKEVGGAD 99
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 17 VELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVA-LDTMTVRGSTIRYIILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSN 87
+D + D + + + R GG++
Sbjct: 76 LDTLLIDDAPKPKNK--ARKEVGGAD 99
>gi|389610295|dbj|BAM18759.1| small ribonucleoprotein particle protein SmD3 [Papilio xuthus]
Length = 130
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + V T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + RQ + GRG S
Sbjct: 76 MLKNAPMFK-RQGNKPSAGRGKS 97
>gi|359479792|ref|XP_002271534.2| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis
vinifera]
Length = 489
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 413 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 470
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D+ ++ R RGG
Sbjct: 471 EGVDI----ELLHDATRREARGG 489
>gi|308504419|ref|XP_003114393.1| CRE-GUT-2 protein [Caenorhabditis remanei]
gi|308261778|gb|EFP05731.1| CRE-GUT-2 protein [Caenorhabditis remanei]
Length = 97
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
+++ELKN + G L + D ++N+ L ++ T D ++F M C+IRGS+++Y+++
Sbjct: 15 VVIELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PSDQVD 78
>gi|118483945|gb|ABK93861.1| unknown [Populus trichocarpa]
Length = 93
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G+L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGNLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D+ D + +R++ RGG
Sbjct: 75 EGVDV---DLLHDATRREA-RGG 93
>gi|340383261|ref|XP_003390136.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Amphimedon
queenslandica]
Length = 131
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E GE Y G L+ + MN L+ V T+R G + ++ + ++RGSMI++L +PD
Sbjct: 20 LETVMGEIYRGKLLEAEDNMNCQLQNVTVTNRSG-QVSQLEQVFVRGSMIRFLIVPD 75
>gi|395753131|ref|XP_003779548.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 4 [Pongo
abelii]
Length = 120
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + ++ ++ N+G G RG+
Sbjct: 76 MLKNAPMLKS-MKNKNQGSGAG---RGKAA 101
>gi|241690470|ref|XP_002411764.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes
scapularis]
gi|215504603|gb|EEC14097.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes
scapularis]
Length = 122
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN + + T RDG + ++ YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLVEAEDNMNCQMANITVTYRDG-RVAQLENVYIRGSKIRFLILPD 75
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G +V D MN +LR V T ++ + + IRG+ I+Y+ +PD I
Sbjct: 17 IELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVS-LDSLSIRGNNIRYIILPDTIP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
+D + D R + RGGRG
Sbjct: 76 LDTLLVDDEPR---KKPARGGRG 95
>gi|299470069|emb|CBN79246.1| Sm-like protein LSm2 [Ectocarpus siliculosus]
Length = 94
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VELKN G L + D ++N+ L +V + + + + C+IRGS+++Y++IP
Sbjct: 15 IAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPS 74
Query: 60 EIID 63
+D
Sbjct: 75 ADVD 78
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G +V D MN +LR V T ++ + + IRG+ I+Y+ +PD I
Sbjct: 17 IELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVS-LDSLSIRGNNIRYIILPDTIP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
+D + D R + RGGRG
Sbjct: 76 LDTLLVDDEPR---KKPARGGRG 95
>gi|345321417|ref|XP_001520666.2| PREDICTED: hypothetical protein LOC100091911 [Ornithorhynchus
anatinus]
Length = 233
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 153 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 210
Query: 58 PDEIID 63
P + +D
Sbjct: 211 PADEVD 216
>gi|270008821|gb|EFA05269.1| hypothetical protein TcasGA2_TC015424 [Tribolium castaneum]
Length = 152
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + ++ YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RVAQLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + +Q + GRG S
Sbjct: 76 MLKNAPMFK-KQTKAGTAGRGKS 97
>gi|393907050|gb|EFO18420.2| U6 snRNA-associated Sm-like protein LSm2 [Loa loa]
Length = 99
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D +++ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDISVT--DSERYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGGRG 84
P + +D R S R
Sbjct: 73 PADQVDTQLLQDASRKEVMQSKRSATA 99
>gi|296086695|emb|CBI32330.3| unnamed protein product [Vitis vinifera]
Length = 137
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 61 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 118
Query: 60 EIIDM 64
E +D+
Sbjct: 119 EGVDI 123
>gi|430813736|emb|CCJ28938.1| unnamed protein product [Pneumocystis jirovecii]
Length = 99
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
++VELKN + G L +CD ++N+ + + C + K+ + +IRGS+++Y+ I
Sbjct: 15 VVVELKNDLSIRGILKSCDQFLNLRIDD--CQVLEELKYPHLSAVKNMFIRGSVVRYVHI 72
Query: 58 PDEIIDM-VKEDQVQRTRQRDSNRGGR 83
P E +D + ED +R Q S + R
Sbjct: 73 PSENVDTSLLEDATRREAQIQSQKNER 99
>gi|255081394|ref|XP_002507919.1| predicted protein [Micromonas sp. RCC299]
gi|226523195|gb|ACO69177.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK G+TY G L+ + N L + T RDG + ++ Y+RGS I++L IPD
Sbjct: 26 IELKTGDTYRGTLLEAEDNWNCQLEGITHTGRDG-RVNQLENVYVRGSKIRFLIIPD 81
>gi|452985910|gb|EME85666.1| hypothetical protein MYCFIDRAFT_52885 [Pseudocercospora fijiensis
CIRAD86]
Length = 115
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VE+ +G+TY G L+ + MN L + T RDG + + YIRGS ++ +PD
Sbjct: 20 VTVEIDSGQTYRGRLIEAEDNMNCQLENINVTQRDG-RVTHLDRVYIRGSHVRLFIVPD 77
>gi|393238250|gb|EJD45788.1| U6 snRNA-associated Sm-like protein LSm2, partial [Auricularia
delicata TFB-10046 SS5]
Length = 101
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN G L + D ++NI L + + C+IRGS+++Y+++P +
Sbjct: 23 VELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYVQLPANAV 82
Query: 63 D-MVKEDQVQRTRQRDSNRGGR 83
D + ED TR+ +N+ R
Sbjct: 83 DTQLLEDA---TRREAANQAKR 101
>gi|331243742|ref|XP_003334513.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309313503|gb|EFP90094.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 96
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKN G L + D ++N+ L + + + C+IRGS+++Y++IP
Sbjct: 17 IELKNDLAIQGTLASVDQFLNLKLENIKVLDQERHPHMMAVKNCFIRGSVVRYVQIPKAA 76
Query: 62 ID-MVKEDQVQRTRQRDSNRGGR 83
+D + ED TR+ +N R
Sbjct: 77 VDTQLLEDA---TRKEAANTAKR 96
>gi|303311569|ref|XP_003065796.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240105458|gb|EER23651.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 98
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
+++ELKN G L + D ++NI L ++ D DK+ + +IRGS+++Y+ +
Sbjct: 15 VIIELKNDIRIRGILKSVDQYLNIKLDDIEVI--DLDKYPHLSSVKNIFIRGSVVRYIVL 72
Query: 58 PDEIID-MVKEDQVQRTRQRDSNRG 81
P E +D + ED +R +N+
Sbjct: 73 PQEAVDRALLEDATRREAASQANKA 97
>gi|291235317|ref|XP_002737590.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3-like
[Saccoglossus kowalevskii]
Length = 123
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E +GE Y G L+ + MN + + T RDG + ++ YIRGS I++L +PD
Sbjct: 21 ETSSGEVYRGKLIEAEDNMNCQMANITVTYRDG-RVSQLEHVYIRGSKIRFLILPD 75
>gi|403293073|ref|XP_003937547.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L EV T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAEVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|448082089|ref|XP_004195048.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|448086614|ref|XP_004196142.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359376470|emb|CCE87052.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359377564|emb|CCE85947.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
Length = 106
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VEL G+ Y G L+ + MN++L +V T M + ++RGSMI+Y+ +P+
Sbjct: 20 VELTTGDIYRGKLLENEDNMNLSLYDVTITKGKSGSTSYMEQVFVRGSMIRYVMVPE 76
>gi|312087894|ref|XP_003145650.1| snRNP core protein SMX5d [Loa loa]
Length = 132
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D +++ M C+IRGS+++Y+++
Sbjct: 48 VVVELKNDLSICGTLHSVDQYLNMKLTDISVT--DSERYPHMLSVKNCFIRGSVVRYVQL 105
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGGRG 84
P + +D R S R
Sbjct: 106 PADQVDTQLLQDASRKEVMQSKRSATA 132
>gi|194382308|dbj|BAG58909.1| unnamed protein product [Homo sapiens]
Length = 120
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + ++ ++ N+G G RG+
Sbjct: 76 MLKNAPMLKS-MKNKNQGSGAG---RGKAA 101
>gi|442762477|gb|JAA73397.1| Putative small nuclear ribonucleoprotein sm d3, partial [Ixodes
ricinus]
Length = 119
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN + + T RDG + ++ YIRGS I++L +PD
Sbjct: 18 ETNTGEVYRGKLVEAEDNMNCQMANITVTYRDG-RVAQLENVYIRGSKIRFLILPD 72
>gi|19172997|ref|NP_597548.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|19168664|emb|CAD26183.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|449329730|gb|AGE96000.1| U6 snRNA associated sm-like protein [Encephalitozoon cuniculi]
Length = 88
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKN + G L CD MN++L+ V DG + + ECY++G+ I+ +++ +I+
Sbjct: 17 LELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSSIF-INECYLKGTSIRLVKLESKIL 75
Query: 63 DMVKEDQVQRTR 74
+E+ V +
Sbjct: 76 LEQREECVSNNK 87
>gi|403350744|gb|EJY74841.1| hypothetical protein OXYTRI_03781 [Oxytricha trifallax]
Length = 320
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRD------GDKF-WRMPECYIRGSMIKYL 55
++ K+ ETY G L+ D +MN L +V+ T G+KF + Y++G IK +
Sbjct: 5 IQTKSNETYEGTLIQMDKYMNTVLEDVLVTQHSVFHPETGEKFVLNFQQVYLKGISIKNI 64
Query: 56 RIPDEIIDMVKEDQVQR 72
+P + I+ K QV R
Sbjct: 65 ILPKDCIEKYKSQQVAR 81
>gi|170047824|ref|XP_001851408.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870100|gb|EDS33483.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 135
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L++L+N + G + N D +MNI++ V+ G +F RM E I I+Y+ IPDE
Sbjct: 29 ILIDLRNETSVAGKITNVDGFMNISMENVVYIDELGKQF-RMDEFMIYPRYIRYIHIPDE 87
Query: 61 I 61
+
Sbjct: 88 L 88
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 108 VELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVA-LDSMTVRGSTIRYVILPDSLP 166
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 167 LDTLLIDDAPKPKNK 181
>gi|71028700|ref|XP_763993.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|68350947|gb|EAN31710.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 118
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL+N Y G L N + MN L V+ T +DG + + + Y+RG+ I+++ P
Sbjct: 20 VELQNSNLYRGTLTNVEDNMNCLLEGVVMTMKDG-RTIALEQVYLRGAQIQFMIFP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNR 111
DM++ + + +D ++ G + G MR N P P + +
Sbjct: 75 DMLRHAPMFKGNPKDKSKQG------VPQMGMPMRPGVPPNVPMPVMGK 117
>gi|209730588|gb|ACI66163.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 119
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|357113192|ref|XP_003558388.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D3-like [Brachypodium distachyon]
Length = 132
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK GE Y ++ C+ N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKTGEVYRXSMLECEDNWNCQLENISFTAKDG-KVSQLEHVFIRGSRVRFMIIPD 77
>gi|224073260|ref|XP_002304049.1| predicted protein [Populus trichocarpa]
gi|224118384|ref|XP_002331469.1| predicted protein [Populus trichocarpa]
gi|118484877|gb|ABK94305.1| unknown [Populus trichocarpa]
gi|222841481|gb|EEE79028.1| predicted protein [Populus trichocarpa]
gi|222873547|gb|EEF10678.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D+ D + +R++ RGG
Sbjct: 75 EGVDV---DLLHDATRREA-RGG 93
>gi|240848533|ref|NP_001155808.1| small nuclear ribonucleoprotein Sm D3 [Acyrthosiphon pisum]
gi|239789870|dbj|BAH71532.1| ACYPI009639 [Acyrthosiphon pisum]
Length = 139
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E +GE Y G L+ + MN + V T RDG + +M Y+RGS ++++ +P D
Sbjct: 21 ETIDGEVYRGKLIEAEDNMNCQVSHVTVTYRDG-RVAQMENVYVRGSKVRFIILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M++ + +++ GRG S
Sbjct: 76 MLRNAPMFKSKMTMGGAAGRGKS 98
>gi|432882999|ref|XP_004074183.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oryzias latipes]
gi|432883001|ref|XP_004074184.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oryzias latipes]
Length = 134
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
V+L++ + G ++N D +MNI L++V+ R G + ++ + +I G ++Y+ IPD +
Sbjct: 43 VDLRDESSARGLVLNVDAFMNIRLKDVLFLDRRG-QTAQLQDLFITGRNVRYVHIPDH-V 100
Query: 63 DMVKEDQVQRTR-QRDSNRGGRGG 85
D++K + Q + R N G GG
Sbjct: 101 DIMKTMESQLAKIHRVRNFAGEGG 124
>gi|402591762|gb|EJW85691.1| small nuclear ribonucleoprotein LSM2 [Wuchereria bancrofti]
Length = 99
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D +++ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDISVT--DSERYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADQVD 78
>gi|170582506|ref|XP_001896160.1| U6 snRNA-associated Sm-like protein LSm2 [Brugia malayi]
gi|158596693|gb|EDP34995.1| U6 snRNA-associated Sm-like protein LSm2, putative [Brugia
malayi]
Length = 99
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D +++ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDISVT--DSERYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADQVD 78
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+K+G+ Y G L + + MN L V T +DG + +CY+RGS I++ +P
Sbjct: 20 IEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRPLA-LEQCYLRGSQIRFFILP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRG 81
DM+K + + NR
Sbjct: 75 DMLKNAPMFKLAANAKNRA 93
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 17 VELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVA-LDTMTVRGSTIRYIILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG + + MN+ LR V T + D + +RGS I+Y+ +PD +
Sbjct: 17 VELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVA-LDTMTVRGSTIRYIILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|160331875|ref|XP_001712644.1| snrpD [Hemiselmis andersenii]
gi|159766093|gb|ABW98319.1| snrpD [Hemiselmis andersenii]
Length = 79
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+L+ELK G +G ++ D + NI L E TS++G F ++P +++G IK +R
Sbjct: 22 VLLELKGGILCSGKILKIDEFFNILLEETFLTSKNGLIFKKVPAIFLKGKTIKNIR 77
>gi|147809809|emb|CAN60390.1| hypothetical protein VITISV_006493 [Vitis vinifera]
Length = 133
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 3 VELKNGETYNGHLVNC-DHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G ++ C D+W N L + T +DG K ++ +IRG ++++ IPD
Sbjct: 23 VELKSGELYRGSMIECKDNW-NCQLENITFTVKDG-KVSQLEHVFIRGIKVRFMVIPD 78
>gi|357511085|ref|XP_003625831.1| SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula]
gi|355500846|gb|AES82049.1| SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula]
gi|388519597|gb|AFK47860.1| unknown [Lotus japonicus]
Length = 93
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D+ ++ R RGG
Sbjct: 75 EGVDI----ELLHDATRREARGG 93
>gi|50555508|ref|XP_505162.1| YALI0F08459p [Yarrowia lipolytica]
gi|49651032|emb|CAG77969.1| YALI0F08459p [Yarrowia lipolytica CLIB122]
Length = 99
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP---ECYIRGSMIKYLRIPD 59
VELKN G L + D +MNI L V T+ + DKF + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDLQIRGILKSVDQFMNIKLENV--TTVEEDKFPHLTAVRDLFIRGSVVRYVHLPP 74
Query: 60 EIID-MVKEDQVQRTRQRDSNRG 81
+D + ED +R S +
Sbjct: 75 GAVDTTLLEDATRREALSHSGKA 97
>gi|198436795|ref|XP_002126080.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D3
(Sm-D3) (snRNP core protein D3) [Ciona intestinalis]
Length = 130
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN +++V T RDG + ++ YIRGS ++++ +P D
Sbjct: 21 ESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDG-RTAQLQNIYIRGSQVRFMILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + R + +GG+ RG+
Sbjct: 76 MLKNAPMLRHQ--------KGGTAGRGKAA 97
>gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|46099139|gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T R G + IRG+ I+Y +PD +
Sbjct: 84 IELKNGTVVHGTVTGVDIQMNTHLKTVKMTVR-GRPAVTLDTLSIRGNNIRYWILPDALP 142
Query: 62 IDMVKEDQVQRT---RQRDSNRGGRGGSN 87
+DM+ D + R+ RG RGG++
Sbjct: 143 LDMLLVDDAPKPKGKRKDPVARGARGGAS 171
>gi|344229960|gb|EGV61845.1| hypothetical protein CANTEDRAFT_107251 [Candida tenuis ATCC
10573]
Length = 108
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VEL G+TY G L+ + MN++L +V+ T M + ++RGSMI+ + +P+
Sbjct: 21 VELVTGDTYRGKLLENEDNMNLSLYDVVITKGRSGTTSHMSQVFVRGSMIRLVIVPE 77
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + + D MN +L+ V T +D + + IRGS ++Y +PD +
Sbjct: 17 IELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREPVP-LETLSIRGSNVRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + +Q+
Sbjct: 76 LDTLLIDDSPKPKQK 90
>gi|346472269|gb|AEO35979.1| hypothetical protein [Amblyomma maculatum]
Length = 122
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN + + T RDG + ++ YIRGS I+++ +PD
Sbjct: 21 ETNTGEVYRGKLVEAEDNMNCQMANITVTYRDG-RVAQLENVYIRGSKIRFMILPD 75
>gi|401397969|ref|XP_003880184.1| hypothetical protein NCLIV_006240 [Neospora caninum Liverpool]
gi|325114593|emb|CBZ50149.1| hypothetical protein NCLIV_006240 [Neospora caninum Liverpool]
Length = 101
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
++VELKN G L + D ++NI L V + + C++RGS ++Y+ +P
Sbjct: 17 IMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPEKCPHLLSIKNCFVRGSAVRYVHLPP 76
Query: 60 EIIDMVKEDQVQRTRQRDSNRG 81
+D+ Q+Q +R+S G
Sbjct: 77 SAVDV---GQLQDMCRRESASG 95
>gi|320039679|gb|EFW21613.1| LSM domain-containing protein [Coccidioides posadasii str.
Silveira]
Length = 98
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
+++ELKN G L + D ++NI L ++ D DK+ + +IRGS+++Y+ +
Sbjct: 15 VIIELKNDIRIRGILKSVDQYLNIKLDDIEVI--DLDKYPHLSSVKNIFIRGSVVRYIVL 72
Query: 58 PDEIIDM-VKEDQVQRTRQRDSNRG 81
P E +D + ED +R +N+
Sbjct: 73 PQEAVDRGLLEDATRREAASQANKA 97
>gi|354492024|ref|XP_003508152.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
Length = 126
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +P D
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRG 84
M+K + ++ + + G G
Sbjct: 76 MLKNAPMLKSMKNKNQGSGAG 96
>gi|443687679|gb|ELT90579.1| hypothetical protein CAPTEDRAFT_221674 [Capitella teleta]
Length = 135
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E +GE Y G LV + MN + + T RDG + ++ +IRGS I++L +P D
Sbjct: 21 ETTSGEVYRGKLVEAEDNMNCQMANITVTYRDG-RVAQLENVFIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
M+K + + R +GG G+ GRG
Sbjct: 76 MLKNAPMFK---RVVGKGGHPGATA-GRG 100
>gi|393238251|gb|EJD45789.1| U6 snRNA-associated Sm-like protein LSm2 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN G L + D ++NI L + + C+IRGS+++Y+++P +
Sbjct: 19 VELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYVQLPANAV 78
Query: 63 D-MVKEDQVQRTRQRDSNRGGR 83
D + ED TR+ +N+ R
Sbjct: 79 DTQLLEDA---TRREAANQAKR 97
>gi|326933035|ref|XP_003212615.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Meleagris gallopavo]
Length = 123
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ T G + N D +MN+ L +V T R G ++ E ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESTATGRVANVDAFMNMRLAQVTFTDRRG-VVSQLDEIFVAGRNVRYVHIPDQVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 IRATIERQLQ 99
>gi|146099718|ref|XP_001468724.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|134073092|emb|CAM71812.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
Length = 113
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+E+ GE Y+G + + MN+ L++ T+R G K +M ++RGS I + ++PD +
Sbjct: 20 IEVATGEVYHGTVEELQNNMNVLLKDATKTAR-GGKETKMDSVFVRGSNIVFFQLPDALQ 78
Query: 62 --IDMVKEDQVQRTRQRDSNRG-GRGGSNQRGR 91
+++ +V Q G G G S +R R
Sbjct: 79 TSPALLRAGEVVSKAQDTRGDGKGFGASRKRAR 111
>gi|118490850|ref|XP_001238734.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella
strain Houghton]
gi|109238517|emb|CAK51481.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria
tenella]
Length = 125
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE K G Y G L N + MN+ ++ V T +DG K + + YIRGS ++ + PD
Sbjct: 24 VETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDG-KVLSLEQVYIRGSQVQMVIFPD 79
>gi|260837085|ref|XP_002613536.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
gi|229298921|gb|EEN69545.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
Length = 120
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G LV + MN + + T RDG + ++ +IRGS I+++ +P
Sbjct: 20 LETTTGEVYRGKLVEAEDNMNCQMANITVTYRDG-RVAQLEHVFIRGSKIRFMILP---- 74
Query: 63 DMVKEDQVQRTRQR 76
DM+K + +++Q+
Sbjct: 75 DMLKNAPMFKSQQK 88
>gi|391342618|ref|XP_003745613.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Metaseiulus occidentalis]
Length = 91
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDK-FWRMPECYIRGSMIKYLRIPD 59
++VELKN + G L + D ++NI L ++ T + + C+IRGS+++Y+++P
Sbjct: 15 VVVELKNDISICGTLHSVDQYLNIKLVDISVTDPEKHPHIQSVKNCFIRGSVVRYIQLPH 74
Query: 60 EIID 63
E +D
Sbjct: 75 EDVD 78
>gi|391342640|ref|XP_003745624.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Metaseiulus occidentalis]
Length = 138
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN +++ + T RDG ++ YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLVEAEDNMNCHMQGITVTYRDGST-SQLENVYIRGSKIRFLILPD 75
>gi|167523208|ref|XP_001745941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775742|gb|EDQ89365.1| predicted protein [Monosiga brevicollis MX1]
Length = 96
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN NG L + D ++NI L + D +++ M C+IRGS+++Y+ +P
Sbjct: 17 VELKNDLQLNGVLKSVDQFLNIKLDSIQVA--DIERYPHMMAVKNCFIRGSVVRYIHLPP 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
E +D Q+ + R GG
Sbjct: 75 EHVD----KQLLQDATRKEATGG 93
>gi|334329130|ref|XP_003341185.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Monodelphis domestica]
Length = 123
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L EV T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQV-QLDDLFVTGRNVRYVHIPDDVD 89
Query: 62 IDMVKEDQVQRT-RQRDSNRGGRG 84
I E Q+Q R R+ G+G
Sbjct: 90 ITATIEQQLQAIHRVRNFGSEGKG 113
>gi|115774627|ref|XP_792582.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Strongylocentrotus purpuratus]
Length = 95
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +++ M C+IRGS+++Y+++
Sbjct: 15 VIVELKNDLSIGGTLHSVDQFLNIKLTDISVT--DQERYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P 58
P
Sbjct: 73 P 73
>gi|429329451|gb|AFZ81210.1| LSM domain-containing protein [Babesia equi]
Length = 121
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
EL+N + Y G L N + MN L V T +DG K + + Y+RGS I+++ PD +
Sbjct: 20 AELQNSQLYRGTLTNVEDNMNCLLEGVTLTMKDG-KTLALEQVYLRGSQIRFMVFPDMLR 78
Query: 62 -IDMVKEDQVQRTRQ 75
M K++ R++
Sbjct: 79 HAPMFKQNAKDRSKH 93
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + + MN LR V T R G + + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVNGTISSVTPQMNTALRTVKMTPR-GQEPISLDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGG 85
+D + D + + + R
Sbjct: 76 LDTLLVDDAPKPKNKARKEAERAS 99
>gi|119194065|ref|XP_001247636.1| hypothetical protein CIMG_01407 [Coccidioides immitis RS]
gi|392863119|gb|EAS36171.2| small nuclear ribonucleoprotein LSM2 [Coccidioides immitis RS]
Length = 178
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
+++ELKN G L + D ++NI L ++ D DK+ + +IRGS+++Y+ +
Sbjct: 95 VIIELKNDIRIRGILKSVDQYLNIKLDDIEVI--DLDKYPHLSSVKNIFIRGSVVRYIVL 152
Query: 58 PDEIIDM-VKEDQVQRTRQRDSNRG 81
P E +D + ED +R +N+
Sbjct: 153 PQEAVDRGLLEDATRREAASQANKA 177
>gi|410911580|ref|XP_003969268.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Takifugu
rubripes]
Length = 135
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
V+L+N T G ++N D +MNI L V+ R G + + + ++ G ++Y+ IPD +
Sbjct: 44 VDLRNECTARGRIINVDAFMNIRLEAVLYRDRRG-QIANLQDLFVTGRNVRYVHIPDH-V 101
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQR 89
D+++ Q Q R R R G ++
Sbjct: 102 DIMRTIQTQLARIRRVRNFAREGGGRK 128
>gi|157129367|ref|XP_001661657.1| small nuclear ribonucleoprotein sm d3 [Aedes aegypti]
gi|108872253|gb|EAT36478.1| AAEL011433-PA [Aedes aegypti]
Length = 147
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I+++ +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQLTVTYRDG-RTSNLENVYIRGSKIRFMILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGS 86
M+K + + + + GRG S
Sbjct: 76 MLKNAPMFKKQGAKAGTAGRGKS 98
>gi|157876267|ref|XP_001686492.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398022728|ref|XP_003864526.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68129566|emb|CAJ08109.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|322502761|emb|CBZ37844.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 113
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+E+ GE Y+G + + MN+ L++ T+R G K +M ++RGS I + ++PD +
Sbjct: 20 IEVATGEVYHGTVEELQNNMNVLLKDATKTAR-GGKETKMDSVFVRGSNIVFFQLPDALQ 78
Query: 62 --IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+++ +V ++ +D+ G+G R R
Sbjct: 79 TSPALLRAGEVV-SKAKDTRGDGKGFGASRKRA 110
>gi|50344816|ref|NP_001002081.1| small nuclear ribonucleoprotein Sm D3 [Danio rerio]
gi|47938090|gb|AAH71554.1| Small nuclear ribonucleoprotein D3 polypeptide [Danio rerio]
Length = 127
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + +N + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNVNCQMANITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>gi|15079335|gb|AAH11510.1| Small nuclear ribonucleoprotein D3 [Mus musculus]
Length = 126
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRG I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGRKIRFLILPD 75
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG G + DH MN L+ V T R G + +RGS I+Y +P+ +
Sbjct: 17 VELKNGTVVQGTVTGVDHNMNTTLKAVKMTPR-GKNPVTLDAMSLRGSTIRYFILPESLN 75
Query: 62 IDMVKEDQVQRTR 74
+D + D R R
Sbjct: 76 VDSLLVDDSIRPR 88
>gi|321456914|gb|EFX68011.1| hypothetical protein DAPPUDRAFT_63450 [Daphnia pulex]
Length = 118
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN + + T RDG + ++ YIRGS I++L +PD
Sbjct: 21 ETNTGEIYRGKLVEAEDNMNCQMTNITVTYRDG-RVAQLENVYIRGSKIRFLILPD 75
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + + MN LR V T R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPIS-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGG 85
+D + D + + + R
Sbjct: 76 LDTLLVDDAPKPKNKARKEAERAS 99
>gi|356504912|ref|XP_003521238.1| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like
[Glycine max]
Length = 497
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN G L + D ++NI L +++ K+ M C+IRGS+++Y+++
Sbjct: 419 VIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQE--KYPHMLSVRNCFIRGSVVRYVQL 476
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGG 82
P E +D+ ++ R RGG
Sbjct: 477 PPEGVDI----ELLHDATRREARGG 497
>gi|351724271|ref|NP_001236540.1| uncharacterized protein LOC100305778 [Glycine max]
gi|255626583|gb|ACU13636.1| unknown [Glycine max]
Length = 93
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
++VELKN G L + D ++NI L +++ K+ M C+IRGS+++Y+++
Sbjct: 15 VIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQE--KYPHMLSVRNCFIRGSVVRYVQL 72
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGG 82
P E +D+ ++ R RGG
Sbjct: 73 PPEGVDI----ELLHDATRREARGG 93
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G + D MN +L+ V T+R G M +RG+ I+Y +PD +
Sbjct: 13 IELKNGTVIQGTIAGVDIAMNTHLKAVKLTAR-GKNPVSMDHLSVRGNNIRYYILPDSLN 71
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGS 86
+D + D + + +QR + + RGG+
Sbjct: 72 LDTLLVD-IDKPKQRPT-KPTRGGT 94
>gi|452848080|gb|EME50012.1| hypothetical protein DOTSEDRAFT_68763 [Dothistroma septosporum
NZE10]
Length = 101
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L +V + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDISIRGTLKSVDQYLNIKLDDVSVVEELKYPHLSSVKNVFIRGSVVRYVHLPAVA 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRGG 85
+D + ED +R + + + +G
Sbjct: 77 VDTPLLEDATRREASQTAAKAKQGA 101
>gi|330846289|ref|XP_003294973.1| hypothetical protein DICPUDRAFT_85411 [Dictyostelium purpureum]
gi|325074445|gb|EGC28500.1| hypothetical protein DICPUDRAFT_85411 [Dictyostelium purpureum]
Length = 114
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFW-RMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L+++ + + + C+IRGS+++Y+ +P +
Sbjct: 17 VELKNDLSITGLLQSVDQFLNIKLKDIKVNEEEKYPYMISVKNCFIRGSVVRYVHLPADD 76
Query: 62 IDMVKEDQVQRTRQRDSNRGGR 83
+D+ R R+ + +
Sbjct: 77 VDVETLQDHSRLEAREQKKQNK 98
>gi|33337945|gb|AAQ13594.1|AF166092_1 MSTP074 [Homo sapiens]
Length = 123
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGPNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|195455442|ref|XP_002074722.1| GK23009 [Drosophila willistoni]
gi|194170807|gb|EDW85708.1| GK23009 [Drosophila willistoni]
Length = 150
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>gi|195384527|ref|XP_002050966.1| GJ19907 [Drosophila virilis]
gi|194145763|gb|EDW62159.1| GJ19907 [Drosophila virilis]
Length = 151
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>gi|195030021|ref|XP_001987867.1| GH19718 [Drosophila grimshawi]
gi|195120652|ref|XP_002004838.1| GI20137 [Drosophila mojavensis]
gi|193903867|gb|EDW02734.1| GH19718 [Drosophila grimshawi]
gi|193909906|gb|EDW08773.1| GI20137 [Drosophila mojavensis]
Length = 151
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>gi|383872886|ref|NP_001244887.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|402853951|ref|XP_003891651.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Papio anubis]
gi|355557828|gb|EHH14608.1| hypothetical protein EGK_00564 [Macaca mulatta]
gi|355745143|gb|EHH49768.1| hypothetical protein EGM_00483 [Macaca fascicularis]
gi|380817368|gb|AFE80558.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|383422299|gb|AFH34363.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
Length = 123
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|403224047|dbj|BAM42177.1| snRNP protein [Theileria orientalis strain Shintoku]
Length = 119
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+EL+N Y G L N + MN L V T++DG + + + Y+RG+ I ++ PD +
Sbjct: 20 IELQNSNLYRGTLTNVEDNMNCLLEGVTMTTKDG-RTLALEQVYLRGAQILFMIFPDMLR 78
Query: 62 -IDMVKEDQVQRTRQRDSNRG 81
M K + RT+ + G
Sbjct: 79 HAPMFKANPKDRTKTLPQSTG 99
>gi|18379085|ref|NP_563682.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|297848550|ref|XP_002892156.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|98961007|gb|ABF58987.1| At1g03330 [Arabidopsis thaliana]
gi|297337998|gb|EFH68415.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|332189439|gb|AEE27560.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 93
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPK 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 75 DGVDV---DLLHDAARREA-RGG 93
>gi|223995383|ref|XP_002287375.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976491|gb|EED94818.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 97
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRI-P 58
+ VELKN G L + D ++NI L V ++D + + C+IRGS+++Y++I P
Sbjct: 15 IAVELKNDVVLTGTLHSVDQYLNIKLTNVSVVNQDKYPQLMSLKNCFIRGSVVRYVQINP 74
Query: 59 DEIIDMVKEDQVQRTRQRDS 78
+++ + +D TR+ +S
Sbjct: 75 NDVDTELLQD---ATRKENS 91
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + + MN+ LR V T+R D + IRGS I+Y +PD +
Sbjct: 17 VELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLA-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|443917507|gb|ELU38208.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 132
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VELK+G Y + +NI+L+++ T RDG K ++ + YIRGSM+++ +PD
Sbjct: 20 ITVELKSGALYP------EDSLNISLKDITVTGRDG-KVSQLDQVYIRGSMVRFFIVPD 71
>gi|346321072|gb|EGX90672.1| tRNA methyltransferase subunit GCD14, putative [Cordyceps militaris
CM01]
Length = 712
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 22 MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRG 81
MN+ L+++ T+RDG + + + YIRGS +++ +P DM++ + R+ SN
Sbjct: 637 MNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVP----DMLRNAPMFRS----SNLR 687
Query: 82 GRGGSNQRGRG 92
GRG RGR
Sbjct: 688 GRGVGMARGRA 698
>gi|225734040|pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734049|pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734058|pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734067|pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRG I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGCKIRFLILPD 75
>gi|449016184|dbj|BAM79586.1| similar to U6 snRNA-associated Sm-like protein [Cyanidioschyzon
merolae strain 10D]
gi|449020060|dbj|BAM83462.1| similar to U6 snRNA-associated Sm-like protein [Cyanidioschyzon
merolae strain 10D]
Length = 97
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-------ICTSRDGDKFWRMPECYIRGSMIKYL 55
VELKNG+ G L D WMN+NL T+ ++ +IRG+MIK +
Sbjct: 17 VELKNGKHCTGVLTGVDPWMNLNLESARVTGASRAATTDSVEQAASYAALHIRGTMIKLV 76
Query: 56 RIPDEIIDMVKEDQVQR 72
++P + + ++++ R
Sbjct: 77 QLPSKSWEYAQDERKPR 93
>gi|393234430|gb|EJD41993.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 123
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + D MN +L+ V ++R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSVVNGTITGVDVQMNTHLKTVKLSTRNRDPVS-LDTLSIRGNNIRYFVLPDALP 75
Query: 62 IDMVKEDQVQR---TRQRD 77
+D + D + TR++D
Sbjct: 76 LDTLLVDDAPKPKSTRKKD 94
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG T NG + D MN +L+ V T ++ D + IRG+ I+Y +PD +
Sbjct: 20 IELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDPV-HLETLSIRGNTIRYFILPDAL 77
>gi|21553911|gb|AAM62994.1| snRNP core Sm protein Sm-X5-like protein [Arabidopsis thaliana]
Length = 93
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPK 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 75 DGVDV---DLLHGAARREA-RGG 93
>gi|194753313|ref|XP_001958958.1| GF12297 [Drosophila ananassae]
gi|190620256|gb|EDV35780.1| GF12297 [Drosophila ananassae]
Length = 151
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTASLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>gi|195148972|ref|XP_002015436.1| GL11081 [Drosophila persimilis]
gi|198455755|ref|XP_002138132.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
gi|194109283|gb|EDW31326.1| GL11081 [Drosophila persimilis]
gi|198135383|gb|EDY68690.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
Length = 150
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +PD
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTGNLENVYIRGSKIRFLILPD 75
>gi|427783433|gb|JAA57168.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 139
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+EL+N + G + + D +MN++L + +G++ + +++G ++Y+ IPD+ I
Sbjct: 28 IELRNELSVWGTVESVDAFMNVDLSDATVVGPNGEETY--ASFFVQGRQVRYIHIPDD-I 84
Query: 63 DMVKEDQVQRTRQRDSNRGG 82
DM Q+Q TR+ ++ G
Sbjct: 85 DMAASLQLQNTRRARQDQEG 104
>gi|297665481|ref|XP_002811089.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Pongo abelii]
Length = 123
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|302679514|ref|XP_003029439.1| hypothetical protein SCHCODRAFT_58515 [Schizophyllum commune
H4-8]
gi|300103129|gb|EFI94536.1| hypothetical protein SCHCODRAFT_58515, partial [Schizophyllum
commune H4-8]
Length = 99
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L ++ + + C+IRGS+++Y+++P E
Sbjct: 16 VELKNDLSITGVLKSVDQFLNIRLDDIKVLDEARHPHMMAVKNCFIRGSVVRYVQLPTEH 75
Query: 62 ID-MVKEDQVQR 72
+D + ED +R
Sbjct: 76 VDTQLLEDATRR 87
>gi|209879656|ref|XP_002141268.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556874|gb|EEA06919.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 120
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L E+ + +++ M C+IRGS+++Y+ P
Sbjct: 35 VELKNDLQITGTLHSIDQYLNIKLNEI--SVNQNEQYVHMNSLKNCFIRGSVVRYIFFPP 92
Query: 60 EIIDM 64
++D+
Sbjct: 93 SLVDI 97
>gi|443897891|dbj|GAC75230.1| small nuclear ribonucleoprotein SMD1 and related snRNPs
[Pseudozyma antarctica T-34]
Length = 124
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T R G + IRG+ I+Y +PD +
Sbjct: 17 IELKNGTVVHGTVTGVDIQMNTHLKTVKMTVR-GRPAVTLDTLSIRGNNIRYWILPDALP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGG 85
+DM+ D + + + + RG
Sbjct: 76 LDMLLVDDAPKPKGKRKDPAARGA 99
>gi|345569040|gb|EGX51909.1| hypothetical protein AOL_s00043g643 [Arthrobotrys oligospora ATCC
24927]
Length = 144
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
+ELKN + G L + D ++NI L E+ D K+ + +IRGS+++Y+ +P
Sbjct: 63 IELKNDLSIRGTLKSVDQFLNIKLDEIQVV--DEVKYPHLSAVKNVFIRGSVVRYVHLPA 120
Query: 60 EIID-MVKEDQVQRTRQRDSNRG 81
+D + ED +R +N+
Sbjct: 121 NAVDTALLEDATRREAAAQANKA 143
>gi|291231092|ref|XP_002735494.1| PREDICTED: LSM10, U7 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 114
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
++EL+N T G + + D +MN+ + +V + DG + + +++G MI++++IPDE+
Sbjct: 27 VIELRNESTVTGVIDSVDAYMNVFMSDVEFVNADG-QVMILSNFFVQGKMIRFVQIPDEV 85
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T+R+ + IRG+ I+Y +PD I
Sbjct: 17 IELKNGSVVHGTITGVDMQMNTHLKTVKLTARNREPMAH-ETLTIRGNTIRYFVLPDAIP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 76 LDTLLVDDAPKPKNR 90
>gi|47212040|emb|CAF92642.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
V+L+N T G +V+ D +MN+ L V+ R G + M + ++ G ++Y+ +PD +
Sbjct: 26 VDLRNECTARGRIVSVDAFMNMRLEAVLYRDRRG-QLANMQDLFVTGRNVRYVHVPDH-V 83
Query: 63 DMVKEDQVQ-----RTRQRDSNRGGR 83
DM+K ++Q R R GGR
Sbjct: 84 DMMKTIEMQLAKIHRVRNFAQEGGGR 109
>gi|14249632|ref|NP_116270.1| U7 snRNA-associated Sm-like protein LSm10 [Homo sapiens]
gi|332808451|ref|XP_513319.2| PREDICTED: LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|397482876|ref|XP_003812641.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Pan paniscus]
gi|20177959|sp|Q969L4.1|LSM10_HUMAN RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|15788234|gb|AAL07689.1|AF394685_1 U7 snRNA-associated Sm-like protein LSM10 [Homo sapiens]
gi|14043264|gb|AAH07623.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|119627772|gb|EAX07367.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|307683145|dbj|BAJ21189.1| LSM10, U7 small nuclear RNA associated [synthetic construct]
gi|410214430|gb|JAA04434.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410259918|gb|JAA17925.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410291414|gb|JAA24307.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410328355|gb|JAA33124.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
Length = 123
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|156377251|ref|XP_001630770.1| predicted protein [Nematostella vectensis]
gi|156217797|gb|EDO38707.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL+N G + + D +MNI +++V G+ +P ++ G+ I+Y+ IPDE I
Sbjct: 27 VELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGE-VDNLPAMFVVGTQIRYVHIPDE-I 84
Query: 63 DMVK 66
DM K
Sbjct: 85 DMRK 88
>gi|444706872|gb|ELW48189.1| U7 snRNA-associated Sm-like protein LSm10 [Tupaia chinensis]
Length = 156
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 64 VDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 122
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 123 ITSTIEQQLQ-IIHRVRNFGGKG 144
>gi|388498296|gb|AFK37214.1| unknown [Medicago truncatula]
Length = 93
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D D++ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDRYPHMLSVRNCFIRGSVVRYVQLPP 74
Query: 60 EIIDM 64
E +D+
Sbjct: 75 EGVDI 79
>gi|50422631|ref|XP_459888.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
gi|49655556|emb|CAG88129.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
Length = 106
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTS-RDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G+TY G L+ + MN++L +V T R G+ + M + ++RGSMI+++ +P+
Sbjct: 20 LELTTGDTYRGKLLENEDNMNLSLYDVTITKGRTGNTSY-MNQVFVRGSMIRFVMVPE 76
>gi|3850571|gb|AAC72111.1| Similar to gb|U85207 snRNP core Sm protein homolog Sm-X5 from Mus
musculus. EST gb|AA612141 comes from this gene
[Arabidopsis thaliana]
Length = 114
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 38 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPK 95
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 96 DGVDV---DLLHDAARREA-RGG 114
>gi|402223919|gb|EJU03982.1| U6 snRNA-associated Sm-like protein LSm2 [Dacryopinax sp. DJM-731
SS1]
Length = 96
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L ++ + D +K M C+IRGS+++Y++IP
Sbjct: 17 VELKNDLCITGTLKSVDQFLNIRLDKI--SVVDPEKHPHMMAVKNCFIRGSVVRYVQIPA 74
Query: 60 EIIDM-VKEDQVQRTRQRDSNR 80
+D + ED +R R
Sbjct: 75 TAVDTQLLEDATRREHASTHKR 96
>gi|84996607|ref|XP_953025.1| snRNP protein [Theileria annulata strain Ankara]
gi|65304021|emb|CAI76400.1| snRNP protein, putative [Theileria annulata]
Length = 118
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VEL+N Y G L N + MN + V+ T +DG + + + Y+RG+ I+++ P
Sbjct: 20 VELQNSNLYRGTLTNVEDNMNCLMEGVVMTMKDG-RTLALEQVYLRGAQIQFMIFP---- 74
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNR 111
DM++ + + +D G + G MR N P P + +
Sbjct: 75 DMLRHAPMFKGNPKDR------GKQVLPQMGMPMRPGMPPNVPMPVMGK 117
>gi|327287168|ref|XP_003228301.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Anolis
carolinensis]
Length = 123
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VEL++ G + N D +MNI L T R G + ++ + ++ G ++Y+ IPDE+
Sbjct: 31 VELRDESLAVGRVTNVDAFMNIRLGPTTFTDRTG-RTSQLEDLFVAGRSVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQRTRQ 75
I E Q+Q R+
Sbjct: 90 IRAAIEGQLQLLRR 103
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T+R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDP-TSLDSLSIRGNNIRYFVLPDALP 75
Query: 62 IDMVKEDQVQRTRQRDSNRG 81
+D + D + + R +
Sbjct: 76 LDTLLVDDAPKPKNRKKDES 95
>gi|348571487|ref|XP_003471527.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Cavia
porcellus]
Length = 123
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + + + +I G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRRGHQV-ELDDLFITGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
I E Q+Q R N G +G Q
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGSKGQGRQ 115
>gi|24652901|ref|NP_725106.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|194883784|ref|XP_001975977.1| GG20251 [Drosophila erecta]
gi|195333626|ref|XP_002033491.1| GM21338 [Drosophila sechellia]
gi|195485512|ref|XP_002091120.1| GE12410 [Drosophila yakuba]
gi|195551839|ref|XP_002076307.1| GD15400 [Drosophila simulans]
gi|13124554|sp|O44437.1|SMD3_DROME RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|2708715|gb|AAB92621.1| small nuclear ribonucleoprotein Sm D3 [Drosophila melanogaster]
gi|7303511|gb|AAF58566.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|21064481|gb|AAM29470.1| RE39820p [Drosophila melanogaster]
gi|190659164|gb|EDV56377.1| GG20251 [Drosophila erecta]
gi|194125461|gb|EDW47504.1| GM21338 [Drosophila sechellia]
gi|194177221|gb|EDW90832.1| GE12410 [Drosophila yakuba]
gi|194201956|gb|EDX15532.1| GD15400 [Drosophila simulans]
gi|220948494|gb|ACL86790.1| SmD3-PA [synthetic construct]
gi|220957770|gb|ACL91428.1| SmD3-PA [synthetic construct]
Length = 151
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>gi|118387719|ref|XP_001026962.1| Sm protein [Tetrahymena thermophila]
gi|89308732|gb|EAS06720.1| Sm protein [Tetrahymena thermophila SB210]
Length = 2269
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ELK G+ + G+L + MN+ L V +R+G K ++ Y+RG+ I+++ IPD
Sbjct: 20 IELKTGDQFRGYLAESEDTMNVRLDNVTMINRNG-KQSQLQSVYLRGAQIRFIVIPD 75
>gi|392569319|gb|EIW62492.1| U6 snRNA-associated Sm-like protein LSm2 [Trametes versicolor
FP-101664 SS1]
Length = 96
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 17 VELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNCFIRGSVVRYVQLPAEH 76
Query: 62 ID-MVKEDQVQR 72
+D + ED +R
Sbjct: 77 VDTQLLEDATRR 88
>gi|328849372|gb|EGF98554.1| hypothetical protein MELLADRAFT_113458 [Melampsora larici-populina
98AG31]
Length = 161
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
+ELKN G L + D ++N+ L + D +++ M C+IRGS+++Y++IP
Sbjct: 35 IELKNDLAIQGTLASVDQFLNLKLENIKVL--DQERYPHMMAVKNCFIRGSVVRYVQIPK 92
Query: 60 EIID-MVKEDQVQRTRQ 75
+D + ED ++ Q
Sbjct: 93 NAVDTQLLEDATRKVLQ 109
>gi|449541112|gb|EMD32098.1| hypothetical protein CERSUDRAFT_119079 [Ceriporiopsis
subvermispora B]
Length = 130
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 17 VELKNDLSITGVLKSVDQFLNIRLDSIKVLDEARHPHMMAVKNCFIRGSVVRYVQLPAEH 76
Query: 62 IDM-VKEDQVQRTR 74
+D + ED +R R
Sbjct: 77 VDTQLLEDATRRGR 90
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG + NG +++C MN++++ + + D + IRG+ I+ + +PDE+
Sbjct: 20 VELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDP-QLLQFINIRGNQIRQILLPDELN 78
Query: 62 IDMVKEDQVQRTRQRDSNRGGR 83
+D V V + + S G +
Sbjct: 79 VDNVLARSVVKIKGNGSGPGSK 100
>gi|344230588|gb|EGV62473.1| hypothetical protein CANTEDRAFT_109388 [Candida tenuis ATCC 10573]
Length = 114
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV--ICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
VELKNG + NG +++C MN+ L+ + I +D M IRG+ I+ + +P++
Sbjct: 20 VELKNGNSVNGQVLSCSPTMNLALKNIKLIQPHQDAQFLNYM---NIRGNQIRQVLLPED 76
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMR 100
+ +D V VQ T+ +G S +G H + +
Sbjct: 77 LNLDAVLAKCVQNTK-------SKGTSGSVSKGSHKPKPFK 110
>gi|401428927|ref|XP_003878946.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495195|emb|CBZ30499.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 113
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+E+ GE Y+G + + MN+ L+ T+R G K +M ++RGS I + ++PD +
Sbjct: 20 IEVATGEVYHGTVEELQNNMNVLLKNATKTAR-GGKETKMDSVFVRGSNIVFFQLPDALQ 78
Query: 62 --IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+++ +V ++ +D+ G+G R R
Sbjct: 79 TSPALLRAGEVV-SKAKDTRGDGKGFGASRKRA 110
>gi|157135921|ref|XP_001663620.1| hypothetical protein AaeL_AAEL013425 [Aedes aegypti]
gi|403183364|gb|EJY58040.1| AAEL013425-PB [Aedes aegypti]
Length = 141
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+L++L+N + G + N D +MNI++ V+ + G K +RM E I ++Y+ IP+
Sbjct: 29 ILIDLRNESSVAGKITNVDGFMNISMENVVLIDQLG-KHFRMEEFMIYPRYVRYIHIPES 87
Query: 61 I-IDMVKEDQVQRTRQR 76
I I E+ ++R R
Sbjct: 88 IEIVPALEEHIKRETTR 104
>gi|392593575|gb|EIW82900.1| U6 snRNA-associated Sm-like protein LSm2 [Coniophora puteana
RWD-64-598 SS2]
Length = 92
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 17 VELKNDLSITGVLKSVDQFLNIRLDSITVLDEARHPHMMAVKNCFIRGSVVRYVQLPAEH 76
Query: 62 ID-MVKEDQVQR 72
+D + ED +R
Sbjct: 77 VDTQLLEDATRR 88
>gi|395328022|gb|EJF60417.1| U6 snRNA-associated Sm-like protein LSm2, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 89
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 16 VELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNCFIRGSVVRYVQLPAEH 75
Query: 62 IDM-VKEDQVQR 72
+D + ED +R
Sbjct: 76 VDTQLLEDATRR 87
>gi|336371214|gb|EGN99553.1| hypothetical protein SERLA73DRAFT_179636 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383976|gb|EGO25124.1| hypothetical protein SERLADRAFT_464832 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 17 VELKNDLCITGVLKSVDQFLNIRLDAIKVLDEARHPHMMAIKNCFIRGSVVRYVQLPAEH 76
Query: 62 ID-MVKEDQVQRTRQRDSNRGGR 83
+D + ED TR+ +N+ R
Sbjct: 77 VDTQLLEDA---TRREAANQAKR 96
>gi|354545656|emb|CCE42383.1| hypothetical protein CPAR2_200260 [Candida parapsilosis]
Length = 118
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG L++C MN+NL+ V + D + +RG+ I+ + +P+++
Sbjct: 20 VELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPIL-LQYINVRGNQIRQILLPEDLN 78
Query: 62 IDMVKEDQVQRTR 74
ID V E R +
Sbjct: 79 IDSVLEKSQTRIK 91
>gi|156084564|ref|XP_001609765.1| small nuclear ribonucleoprotein (snRNP) [Babesia bovis T2Bo]
gi|154797017|gb|EDO06197.1| small nuclear ribonucleoprotein (snRNP), putative [Babesia bovis]
Length = 110
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VE++N + Y G LVN + MN L V +DG K + + ++RG+ I+++ P
Sbjct: 20 VEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDG-KTLALEQVFLRGAQIRFVIFP---- 74
Query: 63 DMVKEDQVQRTRQRDSNR 80
DM++ + + RD N+
Sbjct: 75 DMLRHAPMFKQSARDRNK 92
>gi|351714204|gb|EHB17123.1| U7 snRNA-associated Sm-like protein LSm10 [Heterocephalus glaber]
Length = 123
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + +I G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFITGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
I E Q+Q R N G +G Q
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGSKGQGRQ 115
>gi|320166739|gb|EFW43638.1| snRNP core protein SMX5 [Capsaspora owczarzaki ATCC 30864]
Length = 115
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
++VELKN G L + D ++NI L ++ + + +K+ M C+IRGS+++Y+R+
Sbjct: 33 VVVELKNDLCITGTLHSVDQFLNIKLLDI--SVAEPEKYPHMVSVKTCFIRGSVVRYVRL 90
Query: 58 PDEIIDMVKEDQVQRTRQRDSN 79
+D + +Q +R++N
Sbjct: 91 NPAFVD---TELLQDASRREAN 109
>gi|339521887|gb|AEJ84108.1| U6 snRNA-associated Sm-like protein LSm2 [Capra hircus]
Length = 95
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVHW 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>gi|393217755|gb|EJD03244.1| U6 snRNA-associated Sm-like protein LSm2 [Fomitiporia
mediterranea MF3/22]
Length = 96
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + + C+IRGS+++Y+++P +
Sbjct: 17 VELKNDLSITGVLKSVDQFLNIRLDNIKVLDEANHPHMMAVKNCFIRGSVVRYVQLPAQH 76
Query: 62 ID-MVKEDQVQRTRQRDSNRGGR 83
+D + ED TR+ +N+ R
Sbjct: 77 VDTQLLEDA---TRREAANQVKR 96
>gi|154308998|ref|XP_001553834.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 157
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L ++ + + +IRGS+++Y+ +P +
Sbjct: 76 VELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVVRYVHLPGGV 135
Query: 62 ID-MVKEDQVQRTRQRDSNRG 81
ID + ED +R + + +G
Sbjct: 136 IDTALLEDATRREAAQQATKG 156
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV--ICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ELKNG + NG +++C MNI+++ V I +D M IRG+ I+ + +PD+
Sbjct: 20 LELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYM---NIRGNQIRLVILPDD 76
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGRG--GSNQRGRGGHNMRGMRANNAPKP 107
+ ID V + + + G + G +G G N R R +P
Sbjct: 77 LNIDSVLAKSAVTIKGQGAGPGSQSTNGIGTKGAMGRNKRAPRGGARARP 126
>gi|453089853|gb|EMF17893.1| U6 snRNA-associated Sm-like protein LSm2 [Mycosphaerella populorum
SO2202]
Length = 100
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L ++ + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDISIRGTLKSVDQYLNIKLDDISVVEELKYPHLSSVKNVFIRGSVVRYVHLPAAA 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRG 84
+D + ED +R + + + G
Sbjct: 77 VDTPLLEDATRREASQTAAKAKAG 100
>gi|427786245|gb|JAA58574.1| Putative small nuclear ribonucleoprotein sm d3 [Rhipicephalus
pulchellus]
Length = 122
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G LV + MN + + T RDG + ++ YIRGS I+++ +PD
Sbjct: 21 ETNTGEVYRGKLVEAEDNMNCQMCNITVTYRDG-RVAQLENVYIRGSKIRFMILPD 75
>gi|426328967|ref|XP_004025517.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Gorilla
gorilla gorilla]
Length = 123
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLANVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|440294352|gb|ELP87369.1| hypothetical protein EIN_096260 [Entamoeba invadens IP1]
Length = 95
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
VELKN G L+ D +N+ + + + +F + C+IRG+ I+Y+ + + +I
Sbjct: 17 VELKNDAIITGKLLAVDQLLNVKMDTLKSDNALFPQFQTLTNCFIRGNTIRYISMSESLI 76
Query: 63 DM 64
D+
Sbjct: 77 DI 78
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDP-QSLDTLSIRGNNIRYFVLPDALP 75
Query: 62 ID--MVKEDQVQRTRQRDSNRG-GRG 84
+D +V + + R+++ RG GRG
Sbjct: 76 LDTLLVDDAPKPKNRKKEEVRGRGRG 101
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + D MN +L+ V T+R+ + + IRG+ I+Y +PD +
Sbjct: 17 VELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREP-TSLDSLSIRGNNIRYFVLPDALP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 76 LDTLLVDDAPKPKSR 90
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T+R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDP-SSLDSLSIRGNNIRYFVLPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKSK 90
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T+R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDP-TSLDSLSIRGNNIRYFVLPDALP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 76 LDTLLVDDAPKPKGR 90
>gi|426197631|gb|EKV47558.1| hypothetical protein AGABI2DRAFT_68745 [Agaricus bisporus var.
bisporus H97]
Length = 101
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRD-GDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + + C+IRGS+++Y+++P E
Sbjct: 18 VELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKNCFIRGSVVRYVQLPAEH 77
Query: 62 ID-MVKEDQVQR 72
+D + ED +R
Sbjct: 78 VDTQLLEDATRR 89
>gi|118350476|ref|XP_001008519.1| U6 snRNA-associated Sm-like protein LSm4 [Tetrahymena
thermophila]
gi|89290286|gb|EAR88274.1| U6 snRNA-associated Sm-like protein LSm4 [Tetrahymena thermophila
SB210]
Length = 95
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRD 35
+VELK+G+TY G L + D +MNI L EV TS+D
Sbjct: 1 MVELKSGDTYIGVLEDVDRFMNIQLTEVTFTSKD 34
>gi|403414133|emb|CCM00833.1| predicted protein [Fibroporia radiculosa]
Length = 634
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN + G L + D ++NI L + T D + M C+IRGS+++Y+++P
Sbjct: 555 VELKNDLSITGVLKSVDQFLNIRLDSI--TVLDEARHPHMMAVKNCFIRGSVVRYVQLPA 612
Query: 60 EIID-MVKEDQVQRTRQRDSNR 80
E +D + ED +R + R
Sbjct: 613 EHVDTQLLEDATRREAVSQAKR 634
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNG +G +V D MN +L+ V T + G+ + IRG+ I+Y +PD
Sbjct: 15 LVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNP-TSLEHLTIRGNNIRYFILPDS 73
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGR 83
+ +D + D QR + GR
Sbjct: 74 LPLDTLLIDDTP--LQRPAREAGR 95
>gi|409080718|gb|EKM81078.1| hypothetical protein AGABI1DRAFT_36837 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 101
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRD-GDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + + C+IRGS+++Y+++P E
Sbjct: 18 VELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKNCFIRGSVVRYVQLPAEH 77
Query: 62 IDM-VKEDQVQR 72
+D + ED +R
Sbjct: 78 VDTQLLEDATRR 89
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE-- 60
+ELKNG G ++ D MN +L +V T + G + IRG+ I+Y ++PD
Sbjct: 17 IELKNGTQIIGSIIAVDIRMNTHLSKVKMTIK-GKNPVSLDHLTIRGNNIRYFQLPDALP 75
Query: 61 ----IIDMVKEDQVQRTRQRDSNRGGR 83
++D + Q ++ Q+D+ +GG+
Sbjct: 76 LDTLLVDDQPKIQKRQQNQKDARKGGK 102
>gi|218200492|gb|EEC82919.1| hypothetical protein OsI_27848 [Oryza sativa Indica Group]
Length = 120
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+ +P
Sbjct: 44 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVLLPQ 101
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 102 DGVDI---DILHDATRREA-RGG 120
>gi|440290998|gb|ELP84297.1| proteasome subunit beta type-3, putative [Entamoeba invadens IP1]
Length = 265
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNG Y G L CD MN+++++ + DG KF ++ + ++G ++ + E
Sbjct: 200 IVLELKNGNKYTGTLEKCDRMMNLHVKDSVLIQPDGKKF-KVAKIIVKGMAVRCFAVDGE 258
Query: 61 II 62
++
Sbjct: 259 LL 260
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G +V D MN +L+ V T + G + +RGS I+Y+ +P+ I
Sbjct: 13 IELKNGTVIAGTIVGVDMSMNTHLKAVKMTLK-GKNPLPLEHMSVRGSNIRYVILPETIN 71
Query: 62 IDMVKEDQV--QRTRQRDSNRGGRGGS 86
+D + +D + +++ + +G + G+
Sbjct: 72 LDNLLQDTTVHPKPKKKTAGQGPKKGA 98
>gi|406607031|emb|CCH41546.1| Small nuclear ribonucleoprotein Sm D3 [Wickerhamomyces ciferrii]
Length = 95
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL +GETY + MN+ L ++ TSRDG K + +IRGS I++ +PD
Sbjct: 20 LELNSGETYR-----AEDNMNVQLNDITLTSRDG-KVTHLDHVFIRGSNIRFFVVPD 70
>gi|367042876|ref|XP_003651818.1| hypothetical protein THITE_2112526 [Thielavia terrestris NRRL
8126]
gi|346999080|gb|AEO65482.1| hypothetical protein THITE_2112526 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDIQIRGVLKSVDQYLNIKLDNIQVMEELKYPHMSAVKNVFIRGSVVRYVHLPAAA 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRG 84
+D+ + ED TR+ +N+ G+G
Sbjct: 77 VDIPLLEDA---TRREAANQAGKG 97
>gi|367020836|ref|XP_003659703.1| hypothetical protein MYCTH_2137175 [Myceliophthora thermophila
ATCC 42464]
gi|347006970|gb|AEO54458.1| hypothetical protein MYCTH_2137175 [Myceliophthora thermophila
ATCC 42464]
Length = 98
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDIQIRGVLKSVDQYLNIKLDNIQVLEEIKYPHMSAVKNVFIRGSVVRYVHLPASA 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRG 84
+D+ + ED TR+ +N+ G+G
Sbjct: 77 VDVPLLEDA---TRREAANQAGKG 97
>gi|297607988|ref|NP_001061016.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|242078209|ref|XP_002443873.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|357145002|ref|XP_003573488.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Brachypodium distachyon]
gi|195656753|gb|ACG47844.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|215769192|dbj|BAH01421.1| unnamed protein product [Oryza sativa Japonica Group]
gi|241940223|gb|EES13368.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|255678156|dbj|BAF22930.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|326493970|dbj|BAJ85447.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512672|dbj|BAJ99691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326530750|dbj|BAK01173.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|413921285|gb|AFW61217.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+ +P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVLLPQ 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 75 DGVDI---DILHDATRREA-RGG 93
>gi|336464042|gb|EGO52282.1| hypothetical protein NEUTE1DRAFT_118711 [Neurospora tetrasperma
FGSC 2508]
gi|380096066|emb|CCC06113.1| small nuclear ribonucleoprotein LSM2 [Sordaria macrospora k-hell]
Length = 100
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + +IRGS+++Y+ +P E
Sbjct: 17 VELKNDIQIRGVLKSVDQFLNIKLDNIQVVEELKYPHLSAVKNVFIRGSVVRYVHLPQES 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRG 84
+D+ + ED +R + + +G
Sbjct: 77 VDIQLLEDATRREAANQATKAKQG 100
>gi|332248350|ref|XP_003273327.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Nomascus
leucogenys]
Length = 123
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKNG +G L D MN +L+ V TSR+ + + IRG+ I+Y +PD +
Sbjct: 17 VELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREP-TALDTLSIRGNNIRYFVLPDAL 74
>gi|6730225|pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730227|pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730229|pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730231|pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730233|pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730235|pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 75
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRG I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGCKIRFLILPD 75
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN+ LR V T+R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIA-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN+ LR V T+R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIA-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris
RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNG G +VN D MN L+ V + + + + + +RGS I+Y +PD
Sbjct: 15 VVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNPISLL-QLTVRGSTIRYFILPDS 73
Query: 61 I 61
+
Sbjct: 74 L 74
>gi|226510250|ref|NP_001152698.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|195659125|gb|ACG49030.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|413917383|gb|AFW57315.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+ +P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVLLPQ 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ D + +R++ RGG
Sbjct: 75 DGVDV---DILHDATRREA-RGG 93
>gi|354477407|ref|XP_003500912.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Cricetulus griseus]
gi|344245005|gb|EGW01109.1| U7 snRNA-associated Sm-like protein LSm10 [Cricetulus griseus]
Length = 122
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ + G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESSARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGGKG 111
>gi|168061307|ref|XP_001782631.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665864|gb|EDQ52534.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 93
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN +G L + D ++NI L D K+ M C+IRGS+++Y+++
Sbjct: 15 VIVELKNDLAISGILHSVDQYLNIKLENTRVV--DDTKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGG 82
P + +D+ D + +R++ RGG
Sbjct: 73 PPDGVDV---DILHDATRREA-RGG 93
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNG +G +V D MN +L+ V T + + M IRGS I+Y +PD
Sbjct: 15 LVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPV-SMDHLTIRGSNIRYFILPDS 73
Query: 61 I-ID--MVKEDQVQR 72
+ +D ++ + +QR
Sbjct: 74 LPLDTLLIDDTPIQR 88
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + D MN +L+ V T+R+ + + IRG+ I+Y +PD +
Sbjct: 10 VELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREP-TSLDSLSIRGNNIRYFVLPDALP 68
Query: 62 IDMVKEDQVQRTRQRDSNRG 81
+D + D + + R +
Sbjct: 69 LDTLLVDDAPKPKNRKKDEA 88
>gi|324536502|gb|ADY49465.1| U6 snRNA-associated Sm-like protein LSm2 [Ascaris suum]
Length = 95
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ + D +++ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDI--SVGDSERYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADQVD 78
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+++ELKNG +G +V D MN +L+ V T + G+ + IRG+ I+Y +PD
Sbjct: 15 LVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNP-TSLEHLTIRGNNIRYFILPDS 73
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGR 83
+ +D + D QR + GR
Sbjct: 74 LPLDTLLIDDTP--LQRPAREAGR 95
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T ++ D ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPV-QLDSLSIRGNNIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTR--QRDSN 79
++ + D +TR +RDSN
Sbjct: 76 LETLLIDDAPKTRAKKRDSN 95
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKNG +G + D MN +++ V T R G M IRGS I+Y +PD I
Sbjct: 17 VELKNGTVVHGTVTGVDVSMNTHMKNVKVTVR-GRNPVGMDHLTIRGSTIRYFILPDHI 74
>gi|425777993|gb|EKV16140.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum Pd1]
gi|425780629|gb|EKV18635.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum PHI26]
Length = 125
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G +V+ MN +LR V T + D + IRGS I+Y +PD +
Sbjct: 17 VELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDTI-SLDTINIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|255722764|ref|XP_002546316.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130833|gb|EER30395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 129
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G +++C+ MN+NL+ V D + IRG+ ++ + +PDE+
Sbjct: 20 VELKNGNVISGTMLSCNPSMNLNLKNVKLQQPLQDPIL-LDFINIRGNQVRQIILPDELN 78
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSN 87
I+ V + + + + G + SN
Sbjct: 79 IESVLSKSETKIKGQGAGPGAKPESN 104
>gi|358057850|dbj|GAA96352.1| hypothetical protein E5Q_03018 [Mixia osmundae IAM 14324]
Length = 96
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + C++RGS+I+Y+ IP
Sbjct: 17 VELKNDLAIRGTLKSVDQFLNIKLDNISVLDPERHPHMMTVRNCFVRGSVIRYVHIPKNA 76
Query: 62 IDM-VKEDQVQRTRQRDSNR 80
I+ + ED +R +S R
Sbjct: 77 IETPLLEDATRREAANNSKR 96
>gi|324540294|gb|ADY49583.1| Small nuclear ribonucleoprotein Sm D3, partial [Ascaris suum]
Length = 143
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G L+ + MN + +V T RDG + ++ +IRGS I+++ +PD +
Sbjct: 21 LETTIGEVYRGKLIEAEDNMNCQMSDVNVTYRDG-RTHQLDNVFIRGSKIRFMILPDMLK 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRG 98
+ + R ++ G G N+ GR RG
Sbjct: 80 NAPMFKNIGRAQKGAVGMG--MGDNRDGRAAFRGRG 113
>gi|399215849|emb|CCF72537.1| unnamed protein product [Babesia microti strain RI]
Length = 142
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 7 NGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVK 66
NG Y G L N + MN + V+ T RDG K + + Y+RG+ I+++ PD +
Sbjct: 50 NGLLYRGTLTNVEDTMNCLMEGVVVTMRDG-KTMALEQVYLRGAQIRFMVFPDMLRHAPM 108
Query: 67 EDQVQRTRQRDSNRGG-RGGSNQRGRGGHNMRGMR 100
Q R R R + G R R + N RGM+
Sbjct: 109 FKQNPRDRPRLAVLPGMRHAIQMRAK---NPRGMK 140
>gi|170097796|ref|XP_001880117.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644555|gb|EDR08804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 100
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 16 VELKNDLSITGVLKSVDQFLNIRLDNIKVSDESRHPHMMAVKNCFIRGSVVRYVQLPAEH 75
Query: 62 ID-MVKEDQVQR 72
+D + ED +R
Sbjct: 76 VDTQLLEDATRR 87
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G +V D MN +L+ V T R+ + + IRGS I+Y +PD +
Sbjct: 17 IELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTPVP-LEQLSIRGSNIRYYLLPDNL 74
>gi|162606244|ref|XP_001713637.1| small nuclear ribonucleoprotein D-like protein [Guillardia theta]
gi|13794557|gb|AAK39932.1|AF165818_140 small nuclear ribonucleoprotein D-like protein [Guillardia theta]
Length = 60
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+EL+NG + NG + D + N+ L VI T+ G+ F + +I+G MIK +R
Sbjct: 5 IELENGYSCNGSIKKIDKFKNLTLSNVIITNLRGNLFKSYSKLFIKGRMIKMVR 58
>gi|429962659|gb|ELA42203.1| hypothetical protein VICG_00846 [Vittaforma corneae ATCC 50505]
Length = 82
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5 LKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
LK+ + +G LV CD MN++L+ + G+K + + +C+++G +K ++I +I+
Sbjct: 19 LKDSQAVSGFLVKCDVAMNMHLQNATIQRKSGEKVF-VKQCFLKGQNVKSVKIDPKIL 75
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKNG +G + D MN +++ V T R G M IRGS I+Y +PD I
Sbjct: 17 VELKNGTVVHGTVTGVDVSMNTHMKNVKVTVR-GRNPVGMDHLTIRGSTIRYFILPDHI 74
>gi|170574009|ref|XP_001892634.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|170579971|ref|XP_001895061.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|312076574|ref|XP_003140922.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|158598127|gb|EDP36091.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|158601689|gb|EDP38531.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|307763915|gb|EFO23149.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|402590446|gb|EJW84376.1| small nuclear ribonucleoprotein Sm D3 [Wuchereria bancrofti]
Length = 138
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +E GE Y G L + MN + EV T RDG + + +IRGS I+++ +PD
Sbjct: 19 ITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDG-RTHHLDNVFIRGSKIRFMILPDM 77
Query: 61 IIDMVKEDQVQRTRQRDSNRG------------------GRGG--SNQRGRGG 93
+ + + R ++ G GRGG NQRG GG
Sbjct: 78 LKNAPMFKNIGRAQKGAVGMGMGDNRDGRGLRGRGTAFRGRGGPRGNQRGPGG 130
>gi|448524829|ref|XP_003869020.1| Smd1 protein [Candida orthopsilosis Co 90-125]
gi|380353373|emb|CCG22883.1| Smd1 protein [Candida orthopsilosis]
Length = 116
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG L++C MN+NL+ V + D + +RG+ I+ + +P+++
Sbjct: 20 VELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPIL-LQYINVRGNQIRQILLPEDLN 78
Query: 62 IDMVKE 67
ID V E
Sbjct: 79 IDSVLE 84
>gi|116192515|ref|XP_001222070.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88181888|gb|EAQ89356.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 98
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + +IRGS+++Y+ +P
Sbjct: 17 VELKNDIQIRGVLKSVDQYLNIKLDNIQVLEEIKYPHMSAVKNVFIRGSVVRYVHLPANA 76
Query: 62 IDM-VKEDQVQRTRQRDSNRGGRG 84
+D+ + ED TR+ +N+ G+G
Sbjct: 77 VDVPLLEDA---TRREAANQAGKG 97
>gi|154336783|ref|XP_001564627.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061662|emb|CAM38693.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 113
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E+ GE Y+G + + MN+ L+ T+R G K +M ++RGS I + ++PD +
Sbjct: 20 IEVATGEVYHGIVEELQNNMNVLLKNATKTTR-GGKETKMDSVFVRGSNIVFFQLPDALQ 78
Query: 63 D----MVKEDQVQRTRQRDSNRGGRGGSNQRGR 91
+ + V + + + G G S +R R
Sbjct: 79 TSPALLRAGEIVSKAKDTRGDGKGFGASRKRAR 111
>gi|149694668|ref|XP_001499097.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Equus
caballus]
Length = 123
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-VIHRVRNFGGKG 111
>gi|402467766|gb|EJW03016.1| hypothetical protein EDEG_02598 [Edhazardia aedis USNM 41457]
Length = 97
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM-----PECYIRGSMIKYLRI 57
+ELKN G L++ D ++N L ++ D + W M C IRGS +K+ RI
Sbjct: 17 IELKNDLVIRGILLSVDTFLNFKLTDI--EKIDAKRGWEMGLGDLKTCSIRGSCVKFARI 74
Query: 58 PDEIIDMVKEDQVQRTRQRDS 78
EI D+ + ++ R R S
Sbjct: 75 GYEIDDLKRLEEASRYRAGKS 95
>gi|353239883|emb|CCA71776.1| related to LSM2-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 94
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + + C+IRGS+I+Y+++P
Sbjct: 17 VELKNDLCITGVLKSVDQYLNIRLDAIKVENAEQHPHMMAVKNCFIRGSVIRYVQLPASA 76
Query: 62 IDM-VKEDQVQR 72
+D+ + ED +R
Sbjct: 77 MDIQLLEDATRR 88
>gi|449304089|gb|EMD00097.1| hypothetical protein BAUCODRAFT_30555 [Baudoinia compniacensis
UAMH 10762]
Length = 130
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELK G +G + + MN NLR T + G + + + IRGS I+Y +PD +
Sbjct: 17 IELKTGAIVHGTIASVSPQMNTNLRAAKMTPKGGSQI-SLDQISIRGSEIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|398410479|ref|XP_003856589.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici IPO323]
gi|339476474|gb|EGP91565.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici IPO323]
Length = 100
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN + G L + D ++NI L + D KF + +IRGS+++Y+ +P
Sbjct: 17 VELKNDISIRGTLKSVDQFLNIKLDNISVV--DEVKFPHLSSVKNVFIRGSVVRYVHLPA 74
Query: 60 EIIDM-VKEDQVQRTRQRDSNRGGRGGSN 87
+D + ED TR+ S + ++
Sbjct: 75 AAVDTPLLEDA---TRREASQTAAKAKAS 100
>gi|290999355|ref|XP_002682245.1| predicted protein [Naegleria gruberi]
gi|284095872|gb|EFC49501.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L V D +K+ + C+IRGS ++Y+++
Sbjct: 16 VIVELKNDVSLRGTLHSVDQYLNVKLNNV--QVEDKEKYPYLCCIKNCFIRGSTVRYIQL 73
Query: 58 PDEIID 63
P +D
Sbjct: 74 PAADVD 79
>gi|395830185|ref|XP_003788215.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Otolemur garnettii]
gi|395830187|ref|XP_003788216.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 2
[Otolemur garnettii]
Length = 123
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRRGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSNQ 88
I E Q+Q R N G +G Q
Sbjct: 90 ITATIEHQLQLI-HRVRNFGAKGQGRQ 115
>gi|268531626|ref|XP_002630940.1| C. briggsae CBR-SNR-3 protein [Caenorhabditis briggsae]
Length = 127
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G ++ D MN +LR V T ++ D ++ IRG+ I+Y+ +PD +
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKDPV-KLDTLSIRGNNIRYIILPDPL 74
>gi|322706526|gb|EFY98106.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium anisopliae ARSEF
23]
Length = 137
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 33/114 (28%)
Query: 3 VELKNGETYNGHLVN------------------------CDHWMNINLREVICTSRDGDK 38
+E+ +G+TY G L++ + MN+ L+++ T+RDG +
Sbjct: 22 LEITSGQTYRGKLLDGTPPLGPLPRNIRTCRVLVLTSRLAEDNMNVQLKDITVTARDG-R 80
Query: 39 FWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ + YIRGS +++ +P DM++ + R+R N GRG RGR
Sbjct: 81 VSHLEQVYIRGSHVRFFIVP----DMLRNAPMFRSR----NLRGRGVGLARGRA 126
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici IPO323]
Length = 133
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE-- 60
+ELK G G + + MN NLR T R G + + IRGS I+Y +PD
Sbjct: 17 IELKTGTIVQGTIASISPQMNTNLRNAKMTPRGGSQIA-LEHVSIRGSEIRYYILPDSLP 75
Query: 61 ----IIDMVKEDQVQRTRQRDSNRG 81
+ID + + + +++D + G
Sbjct: 76 LDTLLIDDTPKPKNKARKEQDKSAG 100
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
Length = 114
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + D MN +L+ V + G M IRG+ I+Y +PD +
Sbjct: 17 IELKNGTIVNGTITGVDISMNTHLKAVKLVLK-GKNPVTMDHLSIRGNNIRYYILPDSLN 75
Query: 62 IDMVKEDQVQRTRQRDSNRG 81
++ + D R +Q+ G
Sbjct: 76 LETLLVDDTPRVKQKKPAAG 95
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T+R+ D + +RG+ I+Y +PD +
Sbjct: 17 IELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDP-THLDSLSLRGNTIRYFILPDALP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKGK 90
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G +V+ MN +LR V T + D + +RGS I+Y +PD +
Sbjct: 17 VELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPV-SLDTINVRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + + MN LR V T++ D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIA-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|392577177|gb|EIW70307.1| hypothetical protein TREMEDRAFT_29897 [Tremella mesenterica DSM
1558]
Length = 126
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICT---SRDGDKFWRMPECYIRGSMIKYLRIPDE 60
ELKNG +G + + D M +L+ V T S G + IRG+ I+Y +PD
Sbjct: 11 ELKNGTVIHGTITSVDPAMTTHLKSVKMTLRSSPPGTPPISLDSIAIRGNNIRYYVLPDS 70
Query: 61 I-IDMVKEDQVQRTRQRDSNRG 81
+ +D + D R ++R G
Sbjct: 71 LPLDTLLVDDAPRAKKRKEGGG 92
>gi|354496952|ref|XP_003510587.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like,
partial [Cricetulus griseus]
Length = 102
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ + G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 11 VDLQDESSARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 69
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 70 ITATIEQQLQ-IIHRVRNFGGKG 91
>gi|449436291|ref|XP_004135926.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449436293|ref|XP_004135927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449436295|ref|XP_004135928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
gi|449489026|ref|XP_004158193.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449489028|ref|XP_004158194.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449489032|ref|XP_004158195.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
Length = 93
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D +K+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQEKYPHMLSVRNCFIRGSVVRYVQLPP 74
Query: 60 EIIDMVKEDQVQRTRQRDSNRGG 82
+ +D+ ++ R RGG
Sbjct: 75 DGVDV----ELLHDATRREARGG 93
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIP-LDAMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|308160627|gb|EFO63103.1| SnRNP Sm-like protein, putative [Giardia lamblia P15]
Length = 115
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M++ LK+ T G L N D MN+ L +V + K P ++GS+I +RIPD
Sbjct: 13 MVIALKDSTTIQGVLRNVDVQMNMVLSDVTMIDTES-KSSHYPTYSLQGSLISSIRIPDR 71
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSN-QRGRGG 93
I ++ S +G S Q RG
Sbjct: 72 AIKEAASIAASQSMNSSSIANSQGLSTPQVSRGS 105
>gi|307105968|gb|EFN54215.1| hypothetical protein CHLNCDRAFT_24936 [Chlorella variabilis]
Length = 93
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + + C++RGS+++Y+++P
Sbjct: 17 VELKNDLAITGTLHSVDQYLNIKLNNIRVVNEQKYPHMLSVRACFVRGSVVRYVQLPPGS 76
Query: 62 IDMVKEDQVQRTRQRDSNRGG 82
+D+ ++ R RGG
Sbjct: 77 VDV----ELLHDATRREARGG 93
>gi|156095438|ref|XP_001613754.1| U6 snRNA-associated Sm-like protein LSm4 [Plasmodium vivax Sal-1]
gi|221056945|ref|XP_002259610.1| U6 snRNA-associated sm-like protein Lsm2 [Plasmodium knowlesi
strain H]
gi|148802628|gb|EDL44027.1| U6 snRNA-associated Sm-like protein LSm4, putative [Plasmodium
vivax]
gi|193809682|emb|CAQ40383.1| U6 snRNA-associated sm-like protein Lsm2,putative [Plasmodium
knowlesi strain H]
Length = 103
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN +G L + D ++NI L V + + C++RGS+++Y+ +P +
Sbjct: 19 VELKNDLQISGVLHSVDQYLNIKLTNVTVNHPEKYPHLLSIKSCFVRGSVVRYVFLPSKE 78
Query: 62 IDMVK 66
ID+ K
Sbjct: 79 IDVEK 83
>gi|116780108|gb|ABK21554.1| unknown [Picea sitchensis]
gi|116790929|gb|ABK25794.1| unknown [Picea sitchensis]
Length = 93
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L +D + C+IRGS+++Y+ +P +
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNCFIRGSVVRYVLLPPDG 76
Query: 62 IDMVKEDQVQRTRQRDSNRGG 82
+D+ D + +R++ RGG
Sbjct: 77 VDV---DILHDATRREA-RGG 93
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG NG + + MN LR V T++ D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVA-LDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|344287217|ref|XP_003415351.1| PREDICTED: hypothetical protein LOC100665419 [Loxodonta africana]
Length = 258
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGGQG 111
>gi|312077152|ref|XP_003141177.1| hypothetical protein LOAG_05592 [Loa loa]
gi|307763656|gb|EFO22890.1| hypothetical protein LOAG_05592 [Loa loa]
Length = 147
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G++ D MN +L V T ++ K + +RG+ I+Y+ P+ +
Sbjct: 26 IELKNGTVVTGYVSGVDMAMNFHLNRVGMTLKN-QKPVSLDAVSVRGNNIRYIIFPNNLN 84
Query: 62 IDMVKED-QVQRTRQRDSNRGGRGGSNQ-RGRGGHNMRGMRANNAPK 106
+D + D Q+ R R + RG SN RG+G RG R N+ K
Sbjct: 85 LDALMIDVPQQKARTRKTPSQPRGQSNAIRGQG--VTRGGRGRNSGK 129
>gi|241959636|ref|XP_002422537.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223645882|emb|CAX40545.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 126
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G L++C+ MN+NL+ V D + IRG+ ++ + +PDE+
Sbjct: 20 VELKNGNIISGTLLSCNPPMNLNLKNVKLQQPLQDPIL-LQYINIRGNQVRQILLPDELN 78
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGSN 87
I+ V + + + R +N
Sbjct: 79 IESVLVKSETKIKGNGAGPSARPATN 104
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + D MN +L+ V T+R+ + + IRG+ I+Y +PD +
Sbjct: 17 VELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREP-QTLDSLSIRGNNIRYFTLPDALP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 76 LDTLLVDDAPKPKGR 90
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + D MN +L+ V T+R+ + + IRG+ I+Y +PD +
Sbjct: 13 VELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREP-QTLDSLSIRGNNIRYFTLPDALP 71
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + R
Sbjct: 72 LDTLLVDDAPKPKGR 86
>gi|773428|gb|AAA65451.1| small nuclear ribonucleoprotein, partial [Caenorhabditis elegans]
Length = 71
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E GE Y G L + MN L E + T RDG + ++ +IRG+ I+++ +PD
Sbjct: 7 LETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMILPD 62
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG + +G + D MN +L++V T R G + + IRG+ ++Y +PD +
Sbjct: 141 IELKNGTSVHGTITGVDPSMNTHLKKVKMTVR-GREPQALDSLAIRGNNVRYFILPDSLP 199
Query: 62 IDMVKED----------QVQRTRQRDSNRGGRGGSNQRG 90
+D + D +V+ R RGG GS QRG
Sbjct: 200 LDTLLIDDAPKPKKKKGEVRSARLAPLRRGGP-GSPQRG 237
>gi|291408786|ref|XP_002720696.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Oryctolagus
cuniculus]
Length = 123
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLTKVTYTDRWGHQV-QLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV--ICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ELKNG + NG +++C MNI+++ V I +D M IRG+ I+ + +PD+
Sbjct: 20 LELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYM---NIRGNQIRLVILPDD 76
Query: 61 I-IDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
+ ID V + + + G G N G G G R AP+
Sbjct: 77 LNIDSVLAKSAVTIKGQGA---GPGSQNTNGIGSKGALG-RNKGAPR 119
>gi|390602179|gb|EIN11572.1| U6 snRNA-associated Sm-like protein LSm2, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 114
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L + + + C+IRGS+++Y+++P E
Sbjct: 16 VELKNDLCITGTLKSVDQFLNIRLDGISVLDEARHPHMMAVKNCFIRGSVVRYVQLPAEH 75
Query: 62 ID-MVKEDQVQRTRQR 76
+D + ED +R R
Sbjct: 76 VDTQLLEDATRRGASR 91
>gi|37806009|dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa Japonica Group]
Length = 288
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRI 57
+ VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+ +
Sbjct: 210 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVLL 267
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGG 82
P + +D+ D + +R++ RGG
Sbjct: 268 PQDGVDI---DILHDATRREA-RGG 288
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R G + + +RGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTIASVSPQMNTALRNVKMTPR-GQEPIHLETLNVRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|389584132|dbj|GAB66865.1| U6 snRNA-associated Sm-like protein LSm4 [Plasmodium cynomolgi
strain B]
Length = 95
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN +G L + D ++NI L V + + C++RGS+++Y+ +P +
Sbjct: 11 VELKNDLQISGVLHSVDQYLNIKLTNVTVNHPEKYPHLLSIKSCFVRGSVVRYVFLPSKE 70
Query: 62 IDMVK 66
ID+ K
Sbjct: 71 IDVEK 75
>gi|378733177|gb|EHY59636.1| U6 snRNA-associated Sm-like protein LSm2 [Exophiala dermatitidis
NIH/UT8656]
Length = 98
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---CYIRGSMIKYLRIPD 59
VELKN + G L + D ++NI L +++ D K+ + +IRGS+++Y+ +P
Sbjct: 17 VELKNDISIRGTLKSVDQYLNIKLDDIVVL--DELKYPHLSSVKNVFIRGSVVRYVHLP- 73
Query: 60 EIIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
D+V R D+ R R Q+G+
Sbjct: 74 -------PDKVDRGLLEDACR--REAMAQKGKAA 98
>gi|60687558|gb|AAX30112.1| LSM2 homolog, U6 small nuclear RNA associated [Schistosoma
japonicum]
gi|226486678|emb|CAX74416.1| U6 snRNA-associated Sm-like protein LSm2 [Schistosoma japonicum]
gi|226486680|emb|CAX74417.1| U6 snRNA-associated Sm-like protein LSm2 [Schistosoma japonicum]
Length = 98
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
+L+ELKN G L + D + N L ++ T D +K M C+IRGS+++Y+++
Sbjct: 15 VLIELKNDLCICGTLHSVDQYHNFKLTDISVT--DPEKHPHMLSVKNCFIRGSIVRYVQL 72
Query: 58 PDEIIDMVKEDQVQRTRQRDSNRGGR 83
P + D + ++Q ++++ G +
Sbjct: 73 PADECDTI---ELQNASRKEATVGKQ 95
>gi|8778615|gb|AAF79623.1|AC027665_24 F5M15.9 [Arabidopsis thaliana]
Length = 207
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIK 53
VELK+GE Y G ++ C+ N L ++ T++DG K ++ +IRGS ++
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVR 71
>gi|397569438|gb|EJK46745.1| hypothetical protein THAOC_34574 [Thalassiosira oceanica]
Length = 849
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE------CYIRGSMIKYLR 56
VELKN G L + D ++NI L V ++D R P+ C+IRGS+++Y++
Sbjct: 769 VELKNDVVLTGTLHSVDQYLNIKLTSVRVVNQD-----RYPQLVALKNCFIRGSVVRYVQ 823
Query: 57 I-PDEIIDMVKEDQVQR 72
I P ++ + +D ++
Sbjct: 824 ITPSDVNTELLQDATRK 840
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + +RGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIP-LETLNVRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|449015531|dbj|BAM78933.1| snRNP core Sm-like protein SmX5 [Cyanidioschyzon merolae strain
10D]
Length = 101
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP--ECYIRGSMIKYLRIPDE 60
VELKN + G L D ++N+ L +V + ++ C +RGS I+Y+ +P E
Sbjct: 17 VELKNDLSIRGRLEAVDQYLNVRLAQVQVHTAAAPPVLQLLHGSCTVRGSCIRYIHLPVE 76
Query: 61 IID 63
+D
Sbjct: 77 KVD 79
>gi|440795747|gb|ELR16863.1| snRNP core protein SMX5d, putative [Acanthamoeba castellanii str.
Neff]
Length = 113
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIP 58
++VELKN G L + D ++NI L ++ + + C+IRGS+I+Y++IP
Sbjct: 16 VVVELKNDLAIRGVLHSVDQYLNIKLHDIHVLDEEKYPHLLSVRNCFIRGSVIRYVQIP 74
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG---DKFWRMPECYIRGSMIKYLRIPD 59
+ELKNG +G + + D MN +L+ V + R+ + IRG+ I+Y +PD
Sbjct: 159 IELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLDSIAIRGNNIRYFILPD 218
Query: 60 EI-IDMVKEDQVQRTRQR 76
+ +D + D + R+R
Sbjct: 219 SLPLDTLLVDDSPKARKR 236
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T+R+ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDP-QPLDSLSIRGNNIRYFILPDAL 74
>gi|384247675|gb|EIE21161.1| Sm-D1 protein [Coccomyxa subellipsoidea C-169]
Length = 92
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L V + + + C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAITGILHSVDQYLNIKLNNVHVVNEQKYPHMMSVRNCFIRGSVVRYVQLPPGS 76
Query: 62 IDM 64
+D+
Sbjct: 77 VDV 79
>gi|159464231|ref|XP_001690345.1| Sm-D1 protein [Chlamydomonas reinhardtii]
gi|158279845|gb|EDP05604.1| Sm-D1 protein [Chlamydomonas reinhardtii]
Length = 93
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN +G L + D ++NI L + + + C+IRGS+++Y+ +P
Sbjct: 17 VELKNDLCISGALHSVDQYLNIKLTNTRVHNEQKYPHMMSVRNCFIRGSVVRYVHLPPGA 76
Query: 62 IDMVKEDQVQRTRQRDSNRGG 82
+D+ +V R RGG
Sbjct: 77 VDV----EVLHDATRREARGG 93
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G + D MN +L+ V T R+ + ++ IRGS I+Y +PD +
Sbjct: 14 VELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREP-QQLDSLSIRGSNIRYFILPDSLP 72
Query: 62 IDMVKEDQVQRTRQ 75
+D + D + ++
Sbjct: 73 LDTLLIDDAPKPKK 86
>gi|429966489|gb|ELA48486.1| hypothetical protein VCUG_00095 [Vavraia culicis 'floridensis']
Length = 108
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDK-FWRMPECYIRGSMIKYLRIPDE 60
VELKNG +G L++CD ++NI L +V + K + IRGS +KY+++ +
Sbjct: 17 VELKNGLVISGKLLSCDVFLNIKLSDVAIEDLENFKGLSGVATLSIRGSCVKYIKLEKD 75
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T + G + +RG+ I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGR 83
++ + ++ R + + GG+
Sbjct: 76 LETLLVEEAPRVKPKKPTAGGK 97
>gi|321253219|ref|XP_003192670.1| u6 snRNA-associated sm-like protein lsm2 [Cryptococcus gattii
WM276]
gi|317459139|gb|ADV20883.1| u6 snRNA-associated sm-like protein lsm2, putative [Cryptococcus
gattii WM276]
Length = 105
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
+ VELKN + G L + D ++NI L + + D +K M C+IRGS+++Y+R+
Sbjct: 25 ITVELKNDLSITGTLKSVDQFLNIRLDNI--SVEDPEKHPHMMAVKNCFIRGSVVRYVRM 82
Query: 58 PDEIID-MVKEDQVQR 72
+D + ED +R
Sbjct: 83 AARSVDTTLLEDATRR 98
>gi|124506327|ref|XP_001351761.1| U6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
falciparum 3D7]
gi|23504690|emb|CAD51568.1| U6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
falciparum 3D7]
Length = 103
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDG-DKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN +G L + D ++NI L V + + + C++RGS+++Y+ +P
Sbjct: 19 VELKNDLQISGVLHSVDQYLNIKLTNVSVNNPEKYPHLLSIKSCFVRGSVVRYVFLPSNE 78
Query: 62 IDMVK 66
ID+ K
Sbjct: 79 IDVQK 83
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG G ++ D MN +L +V T + G + IRG+ I+Y +P+ +
Sbjct: 17 IELKNGTQITGSIIGVDIRMNTHLSKVKLTIK-GKNPVSLDHLTIRGNNIRYFLLPEALP 75
Query: 62 IDMVKEDQVQRTRQRDSNR 80
ID + D+ + ++R N+
Sbjct: 76 IDTLLVDEPPKVQKRQQNQ 94
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG NG L++ + MN+NL+ V D + IRG+ I+ + +PD++
Sbjct: 20 VELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPIL-LQYINIRGNQIRQILLPDDLN 78
Query: 62 IDMVKE 67
ID V E
Sbjct: 79 IDGVLE 84
>gi|388509846|gb|AFK42989.1| unknown [Lotus japonicus]
Length = 116
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T + G + +RG+ I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGR 83
++ + ++ R + + GG+
Sbjct: 76 LETLLVEETPRVKPKKPTAGGK 97
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
VELKNG +G +++ MNINL+ V T R+ + + IRG+ ++ + +PD +
Sbjct: 17 VELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVS-LEFINIRGNNVRIVILPDNLN 75
Query: 62 IDMVKEDQVQRTR----QRDSNRGG 82
+D + D + + + ++D RGG
Sbjct: 76 LDSLLTDSLVKPKNKVAKKDPIRGG 100
>gi|410966946|ref|XP_003989986.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Felis catus]
Length = 244
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 152 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 210
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 211 ITATIEQQLQAI-HRVRNFGGKG 232
>gi|167393456|ref|XP_001740583.1| small nuclear ribonucleoprotein sm [Entamoeba dispar SAW760]
gi|165895275|gb|EDR23007.1| small nuclear ribonucleoprotein sm, putative [Entamoeba dispar
SAW760]
Length = 81
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKNG Y G L CD MNI+L+ + +GD+F + + ++G I+ + + ++
Sbjct: 18 LELKNGFKYTGTLDRCDRMMNIHLKNAVLIKPNGDRF-SVAKLIVKGISIRCFSVDESLL 76
>gi|347838545|emb|CCD53117.1| hypothetical protein [Botryotinia fuckeliana]
Length = 565
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++NI L ++ + + +IRGS+++Y+ +P +
Sbjct: 484 VELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVVRYVHLPGGV 543
Query: 62 IDM-VKEDQVQRTRQRDSNRG 81
ID + ED +R + + +G
Sbjct: 544 IDTALLEDATRREAAQQATKG 564
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG T +G ++ D MN +L+ V T + G + +RG+ I+Y +PD +
Sbjct: 17 IELKNGTTVHGTIIGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 75
Query: 62 IDMVKEDQVQRTRQRDSNRG 81
++ + ++ R + + G
Sbjct: 76 LETLLVEETPRVKPKKPTAG 95
>gi|255542740|ref|XP_002512433.1| conserved hypothetical protein [Ricinus communis]
gi|223548394|gb|EEF49885.1| conserved hypothetical protein [Ricinus communis]
Length = 107
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 42 MPECYIRGSMIKYLRIPDE 60
MPECYIRG+ IKYL +PDE
Sbjct: 1 MPECYIRGNTIKYLHVPDE 19
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIP-LDAMNIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDTPKPKNK 90
>gi|440494060|gb|ELQ76472.1| Small nuclear ribonucleoprotein Sm D3 [Trachipleistophora
hominis]
Length = 90
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIP 58
VEL NG G LV D MN+ L +V+ T +G R+ +RGS+I+ + +P
Sbjct: 20 VELDNGTKATGKLVQVDDLMNLTLDDVVLTEINGHN-TRIERMMVRGSLIQLIILP 74
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEEL-QLETLSIRGNNIRYFLLPDSL 74
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T ++G + +RGS I+Y +PD +
Sbjct: 17 IELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGASL-SLDTINLRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|11138533|gb|AAG31431.1|AF204154_1 snRNP core protein SMX5b [Mus musculus]
gi|11138535|gb|AAG31432.1|AF204155_1 snRNP core protein SMX5b [Mus musculus]
Length = 78
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 5 LKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPDEI 61
L G + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++P +
Sbjct: 2 LPAGLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQLPADE 59
Query: 62 ID 63
+D
Sbjct: 60 VD 61
>gi|294933163|ref|XP_002780629.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239890563|gb|EER12424.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 102
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+KN G L D + N+ L+ + I + C+IRGS+++Y+ +PD
Sbjct: 19 VEMKNDVQITGTLQAVDQYFNVKLKNISINNPEQYPHLLSLRNCFIRGSVVRYIHLPD 76
>gi|401882879|gb|EJT47119.1| prenyltransferase [Trichosporon asahii var. asahii CBS 2479]
Length = 803
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L + D +K+ M +IRGS+++Y+R+P
Sbjct: 26 VELKNDLCITGTLKSVDQFLNIRLDGI--RVEDPEKYPHMLAVKNVFIRGSVVRYVRMPA 83
Query: 60 EIID-MVKEDQVQR 72
+D + ED +R
Sbjct: 84 RTVDTTLLEDATRR 97
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPI-SLDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|339250640|ref|XP_003374305.1| putative LSM domain protein [Trichinella spiralis]
gi|316969411|gb|EFV53512.1| putative LSM domain protein [Trichinella spiralis]
Length = 154
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +LR V T +DG+ ++ +RG+ I+Y +PD +
Sbjct: 49 IELKNGTILHGTVTGVDIAMNTHLRAVKMTMKDGETV-QLDVMSVRGNNIRYFILPDTV 106
>gi|294874388|ref|XP_002766931.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239868306|gb|EEQ99648.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 103
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+KN G L D + N+ L+ + I + C+IRGS+++Y+ +PD
Sbjct: 19 VEMKNDVQITGTLPAVDQYFNVKLKNISINNPEQYPHLLSLRNCFIRGSVVRYVHLPD 76
>gi|196006814|ref|XP_002113273.1| hypothetical protein TRIADDRAFT_8416 [Trichoplax adhaerens]
gi|190583677|gb|EDV23747.1| hypothetical protein TRIADDRAFT_8416, partial [Trichoplax
adhaerens]
Length = 101
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E +GE Y G L + MN + V T RDG + + + ++RGS ++++ IPD
Sbjct: 20 LETVSGEVYRGKLSEAEDNMNCQMYSVNVTYRDGRTAY-LQQIFVRGSKVRFIVIPD 75
>gi|2113818|emb|CAB05859.1| AmphiBrf43 [Branchiostoma floridae]
Length = 91
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQFLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
>gi|429965752|gb|ELA47749.1| hypothetical protein VCUG_00710 [Vavraia culicis 'floridensis']
Length = 90
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGD--KFWRMPECYIRGSMIKYLRIP 58
VEL NG G L+ D MN+ L +V+ T +G K RM +RGS+I+++ +P
Sbjct: 20 VELDNGVKVTGKLMQMDDLMNLTLDDVVLTEANGHNIKVERM---MVRGSLIQFIVLP 74
>gi|431891086|gb|ELK01963.1| U7 snRNA-associated Sm-like protein LSm10 [Pteropus alecto]
Length = 123
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQ-AELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N G +G
Sbjct: 90 ITKTIEQQLQ-VIHRVRNFGSKG 111
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + +RGS I+Y +PD +
Sbjct: 17 IELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIA-LDTINLRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQ----RTRQRDSNRGG 82
+D + D + R+ ++RG
Sbjct: 76 LDTLLIDDAPKPKNKARKEAADRGA 100
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T + G + +RGS I+Y +PD +
Sbjct: 17 IELKNGTVVHGTIASVSPQMNTALRNVKMTPK-GQDAISLETLNVRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|258575267|ref|XP_002541815.1| SNP3 protein [Uncinocarpus reesii 1704]
gi|237902081|gb|EEP76482.1| SNP3 protein [Uncinocarpus reesii 1704]
Length = 1064
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
+++ELKN G L + D ++N+ L ++ D DK+ + +IRGS+++Y+ +
Sbjct: 931 VIIELKNDIRIRGTLKSVDQYLNVKLDDIEVI--DLDKYPHLSSVKNIFIRGSVVRYIVL 988
Query: 58 PDEIIDM-VKEDQVQR 72
P E +D + ED +R
Sbjct: 989 PQEAVDRGLLEDATRR 1004
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELK G G + + MN NLR T + G + + IRGS I+Y +PD +
Sbjct: 17 IELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQI-SLDHVSIRGSEIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGGRGGS 86
+D + D + + + R +
Sbjct: 76 LDTLLIDDTPKPKNKARKEQDRSAA 100
>gi|330038573|ref|XP_003239635.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
gi|327206559|gb|AEA38737.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
Length = 88
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIP 58
+ELKNG +G ++N D +MNI L+++ T+ + IRGS IKYL +P
Sbjct: 16 IELKNGLILHGIMLNADKYMNIYLKKIKKTNFSKINL-EIESISIRGSSIKYLILP 70
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRET-QQLESLSIRGNNIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQRDSNRGG 82
+D + D + R R +
Sbjct: 76 LDQLLVDDTPKARMRKKQQSS 96
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T R+ + ++ IRGS ++Y+ +PD +
Sbjct: 17 IELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPV-QLDSLSIRGSNVRYIILPDSL 74
>gi|157822899|ref|NP_001102446.1| U7 snRNA-associated Sm-like protein LSm10 [Rattus norvegicus]
gi|149023943|gb|EDL80440.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023944|gb|EDL80441.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023945|gb|EDL80442.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|187469116|gb|AAI66902.1| Lsm10 protein [Rattus norvegicus]
Length = 122
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDGVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGGKG 111
>gi|308482400|ref|XP_003103403.1| CRE-SNR-1 protein [Caenorhabditis remanei]
gi|308259824|gb|EFP03777.1| CRE-SNR-1 protein [Caenorhabditis remanei]
Length = 152
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIK-----YLRI 57
+E GE Y G L+ + MN L E I T RDG + ++ +IRG+ ++ YL +
Sbjct: 21 LETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDG-RSHQLENVFIRGNKVRFKALLYLEL 79
Query: 58 PD--EIIDMVKEDQVQRT--------RQRDSNRGGRGGSNQRGRG 92
P +I M+ D ++ Q+ + G GG + RGRG
Sbjct: 80 PYIFQIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGIDPRGRG 124
>gi|406866049|gb|EKD19089.1| small nuclear ribonucleoprotein LSM2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 104
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ VELKN G L + D ++NI L + + + +IRGS+++Y+ +P
Sbjct: 20 VTVELKNDIQIRGTLKSVDQYLNIKLDNISVVEDLKYPHLSSVKNVFIRGSVVRYVHLPG 79
Query: 60 EIID-MVKEDQVQRTRQRDSNRGGR 83
+D + ED TR+ +N+ G+
Sbjct: 80 SAVDTALLEDA---TRREAANQAGK 101
>gi|401825715|ref|XP_003886952.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|392998109|gb|AFM97971.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 87
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP--ECYIRGSMIKYLRIPDE 60
VE NG+ Y G + D +MN+ L EV TS MP E IRGS I++ +P
Sbjct: 20 VETNNGDMYRGRMKEVDDYMNVVLDEVTVTSHSS----CMPKKEIVIRGSSIRFFVLPPA 75
Query: 61 I 61
+
Sbjct: 76 L 76
>gi|170585533|ref|XP_001897537.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|158595042|gb|EDP33618.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
Length = 91
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E GE Y G L + MN + EV T RDG + + +IRGS I+++ +PD
Sbjct: 21 LETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDG-RTHHLDNVFIRGSKIRFMILPD 76
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T + G + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITSVSPQMNTALRTVKMTPK-GQDAVSLDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T + G + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITSVSPQMNTALRTVKMTPK-GQDAVSLDTMNIRGSTIRYFILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|139948936|ref|NP_001077250.1| U7 snRNA-associated Sm-like protein LSm10 [Bos taurus]
gi|426215182|ref|XP_004001853.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Ovis aries]
gi|134024772|gb|AAI34670.1| LSM10 protein [Bos taurus]
gi|296488939|tpg|DAA31052.1| TPA: LSM10, U7 small nuclear RNA associated [Bos taurus]
gi|440908593|gb|ELR58596.1| U7 snRNA-associated Sm-like protein LSm10 [Bos grunniens mutus]
Length = 122
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAQVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDNVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T++ D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPI-SLDTINIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDTPKPKNK 90
>gi|20270251|ref|NP_620046.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|253795523|ref|NP_001156738.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|52783143|sp|Q8QZX5.1|LSM10_MOUSE RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|19354497|gb|AAH24543.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|20071449|gb|AAH26476.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|74228609|dbj|BAE25378.1| unnamed protein product [Mus musculus]
gi|148698363|gb|EDL30310.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
Length = 122
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDGVD 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGGKG 111
>gi|321468738|gb|EFX79721.1| hypothetical protein DAPPUDRAFT_304272 [Daphnia pulex]
Length = 153
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+VEL+N G + D +MN++L+ D D+ + E +++ I+Y++IP++I
Sbjct: 30 VVELRNEMAVKGLISQVDGFMNVSLQNATVQGND-DQHYHFEEFFVKARNIRYVQIPEDI 88
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG T +G ++ D MN +L++V T + G + +RG+ I+Y +PD +
Sbjct: 17 IELKNGTTAHGTIMGVDVSMNTHLKQVKLTLK-GKNPTAVEHLSVRGNTIRYYILPDSL 74
>gi|67481025|ref|XP_655862.1| LSM domain containing protein [Entamoeba histolytica HM-1:IMSS]
gi|56473016|gb|EAL50464.1| LSM domain containing protein [Entamoeba histolytica HM-1:IMSS]
gi|449704561|gb|EMD44781.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 81
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+ELKNG Y G L CD MNI+L+ I GD+F + + ++G I+ + + ++
Sbjct: 18 LELKNGFKYTGILDRCDRMMNIHLKNAILIKPSGDRF-SVSKLIVKGISIRCFSVDESLL 76
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T ++G + +RGS I+Y +PD +
Sbjct: 17 IELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLT-LDVINLRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLIDDAPKPKNK 90
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G +++ MN LR V T + D + +RGS I+Y +PD +
Sbjct: 17 IELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPI-SLDTINVRGSTIRYFILPDSL 74
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T++ D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPI-SLDTINIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + + +
Sbjct: 76 LDTLLVDDAPKPKNK 90
>gi|159110729|ref|XP_001705611.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
gi|157433698|gb|EDO77937.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
Length = 125
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M++ LK+ T G L N D MN+ L +V + K P ++GS+I +RIPD
Sbjct: 23 MVIALKDSTTIQGVLRNVDVQMNMVLSDVTMIDTES-KSSHYPTYSLQGSLISSIRIPDR 81
Query: 61 II 62
I
Sbjct: 82 AI 83
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,589,338,588
Number of Sequences: 23463169
Number of extensions: 105445338
Number of successful extensions: 423816
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 835
Number of HSP's that attempted gapping in prelim test: 421111
Number of HSP's gapped (non-prelim): 1998
length of query: 155
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 38
effective length of database: 9,614,004,594
effective search space: 365332174572
effective search space used: 365332174572
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)