BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1175
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTR 74
IIDMVKE+ V + R
Sbjct: 75 IIDMVKEEVVAKGR 88
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 74/89 (83%), Gaps = 8/89 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQR 89
IIDMV+E+ + GRGG Q+
Sbjct: 75 IIDMVREEAAKGR--------GRGGPQQK 95
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 5/95 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECY+RG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHN 95
+ID V+E+ RT +R G R RGG +
Sbjct: 75 VIDKVQEEAKSRT-----DRKPPGVGRARARGGRD 104
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 65/68 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGDKFWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKED 68
+ID V+E+
Sbjct: 75 VIDKVQEE 82
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 68/76 (89%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELK+GETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMP+CYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQRTRQR 76
+ID V+E+ R ++
Sbjct: 75 VIDKVQEETKSRADRK 90
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium
discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 6/104 (5%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETYNG LVNCD+WMNINL+ VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 61 IIDMV-KEDQVQRT--RQR-DSNRG-GRG-GSNQRGRGGHNMRG 98
IID+V +E+Q RT +QR DSNRG GRG G RGRG + RG
Sbjct: 75 IIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED 68
++D+VK +
Sbjct: 76 VVDLVKTE 83
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET+NGHL NCD++MN+ LREVI T DGDKF+R+PECYIRG+ IKYLRI DE
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 61 IIDMVKEDQVQR 72
++ V + Q Q+
Sbjct: 75 VLSQVAKQQAQQ 86
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG----------DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S + K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G TY G LV + MN+ LR+VI T G M + ++RGS IK++ +PD
Sbjct: 21 LELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFVRGSQIKFIVVPD 76
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL+NG TY G L+ + MN +R++ T+RDG + + + YIRGS I++L +PD
Sbjct: 18 MELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYIRGSHIRFLIVPD 73
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium
discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFW-RMPECYIRGSMIKYLRIPD 59
+ VELKN + G L + D ++NI L+++ D + + C+IRGS+++Y+ +P
Sbjct: 15 ITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPA 74
Query: 60 EIID---MVKEDQVQRTRQRDSNRGGRGGSNQRG 90
E +D + +++ Q+ N+ + +NQ+
Sbjct: 75 EDVDVETLQDHSRLEAREQKKQNKQHQEQTNQKS 108
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62
+E GE Y G L + MN L E + T RDG + ++ +IRG+ I+++ +PD +
Sbjct: 21 LETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMILPDMLK 79
Query: 63 DMVKEDQVQRTRQRDSNRGGRGGSNQRGRG 92
+ + R Q+ + G GG +QRGRG
Sbjct: 80 NAPMFKNIGRA-QKGAIGMGLGGLDQRGRG 108
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PADEVD 78
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10
PE=1 SV=1
Length = 123
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITSTIEQQLQ-IIHRVRNFGGKG 111
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIID 63
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +P D
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILP----D 75
Query: 64 MVKEDQVQRTRQRDSNRGGRGGSNQRGRGG 93
M+K + + + G GG+ RG+
Sbjct: 76 MLKNAPMFKKQTGK----GLGGTAGRGKAA 101
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus GN=Lsm10
PE=1 SV=1
Length = 122
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDGVD 89
Query: 62 IDMVKEDQVQRTRQRDSNRGGRG 84
I E Q+Q R N GG+G
Sbjct: 90 ITATIEQQLQ-IIHRVRNFGGKG 111
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G ++ D MN +LR V T ++ + ++ IRG+ I+Y+ +PD +
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPL 74
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + D MN +L+ V T ++ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNNIRYFILPDSLP 75
Query: 62 --IDMVKEDQVQRTRQRDS 78
++ + +T+++DS
Sbjct: 76 LETLLIDDTPKSKTKKKDS 94
>sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1
Length = 96
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP---ECYIRGSMIKYLRIPD 59
VELKN + G L + D ++N+ L + D K+ M + +IRGS+++Y+ +
Sbjct: 17 VELKNDMSIRGILKSVDQFLNVKLENISVV--DASKYPHMAAVKDLFIRGSVVRYVHMSS 74
Query: 60 EIIDMV 65
+D +
Sbjct: 75 AYVDTI 80
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + D MN +L+ V T + G + + IRG+ I+Y +PD +
Sbjct: 17 IELKNGTIVHGTITSVDMQMNTHLKAVKMTVK-GREPVPVETLSIRGNNIRYYILPDSLP 75
Query: 62 IDMVKEDQVQRTRQR 76
+D + D + +Q+
Sbjct: 76 LDTLLIDDSTKPKQK 90
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRI 57
++VELKN G L + D ++N+ L + CT D K+ + +IRGS ++Y+ +
Sbjct: 15 VVVELKNDIEIKGTLQSVDQFLNLKLDNISCT--DEKKYPHLGSVRNIFIRGSTVRYVYL 72
Query: 58 PDEIID 63
++D
Sbjct: 73 NKNMVD 78
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSL 74
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3
SV=1
Length = 97
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRD-----GDKFWRMPECYIRGSMIKYL 55
++V LKN + +G L N D ++NI + VI S + + C IRGS IK +
Sbjct: 15 IIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSV 74
Query: 56 RIPDEIIDMVKEDQVQRTRQR 76
+ + ++E V+ TR +
Sbjct: 75 ELKK---NGLEEHMVEATRIK 92
>sp|Q8SQK1|LSM2_ENCCU Probable U6 snRNA-associated Sm-like protein LSm2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=LSM2 PE=3
SV=1
Length = 94
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRI 57
V LK G +G L D ++N++L +V I +S G + C IRGS IKY+ +
Sbjct: 17 VMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPG--LSSISVCSIRGSSIKYILV 70
>sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster GN=lig PE=1 SV=1
Length = 1375
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 68 DQVQRTRQRDSNRGG-RGGSNQRGRGG----HNMRGMRANNAP 105
D+ +++R R SNRGG RG S+ RG G N R R + P
Sbjct: 163 DRREKSRNRSSNRGGTRGSSDSRGWRGRETRENERNQRESREP 205
>sp|Q91VX2|UBAP2_MOUSE Ubiquitin-associated protein 2 OS=Mus musculus GN=Ubap2 PE=2 SV=1
Length = 1132
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 66 KEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRA 101
KE++ +RT +R+++RG RG +N++GRGG+ +R +
Sbjct: 117 KENREKRT-EREASRG-RGTNNRKGRGGNRVREFKG 150
>sp|Q9USS9|DNI2_SCHPO Delayed minus-nitrogen induction protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dni2 PE=2 SV=1
Length = 248
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 88 QRGRGGHNMRGMRA---NNAPKPTLNRNELFYYCGIILLITCLFQMLKSQVDLNMLRVMT 144
+RG + G+ A N P P++ N + + L+ C + KS + +LRV
Sbjct: 2 ERGTSKFSWIGLVARIYNYIPHPSIFSNAILGIAWLFLIFLCCSCLTKSSIFARLLRVKN 61
Query: 145 MTTDINHGF 153
TT ++ GF
Sbjct: 62 ETTTVDVGF 70
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila melanogaster
GN=SmF PE=3 SV=2
Length = 88
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNI---NLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+LV+LK G+ Y G LV+ D +MN+ N EVI S G+ + E IR + + Y++
Sbjct: 21 VLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN----LGEVLIRCNNVLYIK 75
>sp|P31370|POU1_DUGJA POU domain protein 1 OS=Dugesia japonica GN=POU1 PE=2 SV=1
Length = 559
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 103 NAPKPTLNRNELFYYCG 119
NAP PTL N LFY CG
Sbjct: 235 NAPSPTLTNNNLFYSCG 251
>sp|Q9V4P1|ANLN_DROME Actin-binding protein anillin OS=Drosophila melanogaster GN=scra PE=1
SV=3
Length = 1239
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 VNCDHWMNINLREVICTSRDGDKF--WRMPECYIRGSMIKYLRIPDE 60
VNC+ +++ + + D F W CY+ GS+I Y + PD+
Sbjct: 1099 VNCELSVSVEYKGFLTMFEDISGFGAWHRRWCYLNGSVINYWKYPDD 1145
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREV------ICTSRDGDKFWRMPECYIRGSMIKY 54
++V L +G Y G L D +MNI L + + T+R GD F IRG+ + Y
Sbjct: 40 VIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF-------IRGNNVLY 92
Query: 55 LRIPDEI 61
+ + I
Sbjct: 93 ISAAEPI 99
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+ V L NG Y G+L + D +MNI L E GD+ + +IRG+ + Y+
Sbjct: 29 VTVRLHNGVEYLGNLQSIDGYMNIVLDET-KEFVGGDQARNYGDVFIRGNNVLYIS 83
>sp|B0VE81|IF2_ACIBY Translation initiation factor IF-2 OS=Acinetobacter baumannii
(strain AYE) GN=infB PE=3 SV=1
Length = 899
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 73 TRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
T R +GGR G ++ HN RG++++ A K
Sbjct: 272 TNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANK 305
>sp|B0VLU2|IF2_ACIBS Translation initiation factor IF-2 OS=Acinetobacter baumannii
(strain SDF) GN=infB PE=3 SV=1
Length = 899
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 73 TRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
T R +GGR G ++ HN RG++++ A K
Sbjct: 272 TNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANK 305
>sp|B2I2M7|IF2_ACIBC Translation initiation factor IF-2 OS=Acinetobacter baumannii
(strain ACICU) GN=infB PE=3 SV=1
Length = 899
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 73 TRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
T R +GGR G ++ HN RG++++ A K
Sbjct: 272 TNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANK 305
>sp|B7I3R9|IF2_ACIB5 Translation initiation factor IF-2 OS=Acinetobacter baumannii
(strain AB0057) GN=infB PE=3 SV=1
Length = 899
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 73 TRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
T R +GGR G ++ HN RG++++ A K
Sbjct: 272 TNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANK 305
>sp|B7H115|IF2_ACIB3 Translation initiation factor IF-2 OS=Acinetobacter baumannii
(strain AB307-0294) GN=infB PE=3 SV=1
Length = 899
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 73 TRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPK 106
T R +GGR G ++ HN RG++++ A K
Sbjct: 272 TNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANK 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,091,022
Number of Sequences: 539616
Number of extensions: 2583358
Number of successful extensions: 10136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 9846
Number of HSP's gapped (non-prelim): 275
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)