Query psy1175
Match_columns 155
No_of_seqs 171 out of 969
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:59:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_A Protein (small nuclear 99.9 1.4E-25 4.9E-30 168.6 7.1 71 1-72 15-86 (119)
2 2y9a_D Small nuclear ribonucle 99.9 8E-24 2.7E-28 161.5 8.3 61 1-62 18-78 (126)
3 4emh_A Probable U6 snRNA-assoc 99.8 1.3E-21 4.4E-26 145.1 7.4 70 1-70 29-98 (105)
4 1d3b_A Protein (small nuclear 99.8 7.5E-21 2.6E-25 132.3 7.5 58 1-59 18-75 (75)
5 1ljo_A Archaeal SM-like protei 99.7 6.1E-18 2.1E-22 117.2 6.7 59 1-60 18-77 (77)
6 1h64_1 SnRNP SM-like protein; 99.7 9.3E-18 3.2E-22 115.6 6.5 59 1-60 17-75 (75)
7 1i4k_A Putative snRNP SM-like 99.7 1.2E-17 4.2E-22 115.3 6.8 60 1-61 17-76 (77)
8 3s6n_F Small nuclear ribonucle 99.7 3.5E-17 1.2E-21 116.6 7.5 60 1-61 19-78 (86)
9 1th7_A SnRNP-2, small nuclear 99.7 4.2E-17 1.4E-21 114.1 7.2 59 1-60 22-80 (81)
10 1n9r_A SMF, small nuclear ribo 99.7 6.6E-17 2.2E-21 117.1 7.0 58 1-59 34-92 (93)
11 3s6n_G Small nuclear ribonucle 99.7 8.9E-17 3E-21 111.6 7.2 60 1-61 17-76 (76)
12 1i8f_A Putative snRNP SM-like 99.7 1.4E-16 4.9E-21 111.6 6.4 57 1-59 24-80 (81)
13 4emk_B U6 snRNA-associated SM- 99.6 1.3E-16 4.4E-21 110.3 5.5 58 1-59 17-74 (75)
14 1mgq_A SM-like protein; LSM, R 99.6 5.2E-16 1.8E-20 109.3 6.4 55 1-56 28-82 (83)
15 4emk_A U6 snRNA-associated SM- 99.6 1.1E-15 3.8E-20 111.3 7.5 59 1-59 33-91 (94)
16 1m5q_A SMAP3, small nuclear ri 99.6 1.4E-15 4.9E-20 116.4 7.5 66 1-71 13-78 (130)
17 3bw1_A SMX4 protein, U6 snRNA- 99.6 3.8E-15 1.3E-19 107.8 6.7 63 1-63 23-91 (96)
18 1d3b_B Protein (small nuclear 99.6 4.1E-15 1.4E-19 105.7 5.6 60 1-60 17-85 (91)
19 3s6n_E Small nuclear ribonucle 99.5 1.2E-14 4E-19 105.3 7.8 59 1-59 29-91 (92)
20 2fwk_A U6 snRNA-associated SM- 99.5 1.7E-14 5.9E-19 108.3 5.5 60 1-60 41-114 (121)
21 4emg_A Probable U6 snRNA-assoc 99.5 8.7E-14 3E-18 100.4 7.0 59 1-59 22-92 (93)
22 1b34_B Protein (small nuclear 99.4 8.7E-14 3E-18 103.9 6.1 61 1-61 42-115 (118)
23 4emk_C U6 snRNA-associated SM- 99.4 2E-13 6.9E-18 102.0 7.3 61 1-61 36-102 (113)
24 3pgw_B SM B; protein-RNA compl 99.4 3.3E-13 1.1E-17 112.3 7.5 60 1-60 17-85 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 97.6 0.00013 4.4E-09 52.5 6.6 54 1-61 20-74 (86)
26 2qtx_A Uncharacterized protein 91.8 0.13 4.5E-06 35.6 3.2 22 1-22 28-49 (71)
27 3ahu_A Protein HFQ; SM-like mo 90.8 0.19 6.4E-06 35.4 3.2 22 1-22 26-47 (78)
28 2ylb_A Protein HFQ; RNA-bindin 90.7 0.2 6.7E-06 34.8 3.2 46 1-60 24-69 (74)
29 1u1s_A HFQ protein; SM-like ba 90.7 0.19 6.6E-06 35.7 3.2 22 1-22 22-43 (82)
30 1kq1_A HFQ, HOST factor for Q 89.9 0.25 8.4E-06 34.6 3.2 48 1-61 22-69 (77)
31 3sb2_A Protein HFQ; SM-like, R 88.9 0.32 1.1E-05 34.2 3.2 47 1-61 23-69 (79)
32 4a53_A EDC3; RNA binding prote 88.5 0.41 1.4E-05 36.5 3.7 45 1-57 15-61 (125)
33 2y90_A Protein HFQ; RNA-bindin 87.9 0.39 1.3E-05 35.5 3.2 47 1-61 24-70 (104)
34 2vc8_A Enhancer of mRNA-decapp 82.5 3.3 0.00011 29.5 5.8 53 1-57 12-66 (84)
35 2vxe_A CG10686-PA; EDC3, CAR-1 82.2 6.1 0.00021 28.3 7.1 59 2-60 17-84 (88)
36 2fb7_A SM-like protein, LSM-14 75.2 5.9 0.0002 28.8 5.3 57 2-58 23-88 (95)
37 3hfo_A SSR3341 protein; HFQ, S 68.9 4.4 0.00015 27.8 3.3 44 1-56 24-67 (70)
38 3by7_A Uncharacterized protein 58.4 40 0.0014 24.4 6.9 57 2-60 7-77 (100)
39 3hfn_A ASL2047 protein; HFQ, S 58.2 9.2 0.00031 26.3 3.3 44 1-56 26-69 (72)
40 1y96_B Gemin7, SIP3, GEM-assoc 48.0 40 0.0014 23.9 5.3 52 1-58 32-84 (85)
41 2f3j_A RNA and export factor b 37.4 46 0.0016 24.8 4.6 19 137-155 115-133 (177)
42 1ycy_A Conserved hypothetical 32.4 80 0.0027 21.6 4.7 49 3-57 21-69 (71)
43 2e12_A SM-like motif, hypothet 28.0 35 0.0012 24.8 2.4 16 1-16 31-46 (101)
44 1nvp_D Transcription initiatio 23.6 1.2E+02 0.004 22.0 4.6 29 5-33 51-82 (108)
45 1nh2_D Transcription initiatio 22.9 1E+02 0.0034 23.0 4.2 29 5-33 55-86 (121)
No 1
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.92 E-value=1.4e-25 Score=168.58 Aligned_cols=71 Identities=30% Similarity=0.521 Sum_probs=60.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh-hhhHHHHHHhh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI-IDMVKEDQVQR 72 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei-id~~k~~~~~k 72 (155)
|+||||||.+|.|+|.+||.|||++|+||+++.+++++. +++.+||||+||+||++||++ +|....++++|
T Consensus 15 V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~-~lg~v~IRG~nI~~I~~pd~l~~d~~l~~~~pK 86 (119)
T 1b34_A 15 VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPK 86 (119)
T ss_dssp EEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCE-EEEEEEECGGGEEEEECCTTCCHHHHTC-----
T ss_pred EEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCcee-EcceEEEcCCeEEEEEeccccccchhHhhhccc
Confidence 689999999999999999999999999999998777665 899999999999999999996 66666555444
No 2
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.90 E-value=8e-24 Score=161.46 Aligned_cols=61 Identities=34% Similarity=0.656 Sum_probs=57.6
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchhh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEII 62 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdeii 62 (155)
|+||||||.+|+|+|.+||.|||++|+||+++.++|+.. +++++|||||+|+||++||++.
T Consensus 18 V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~-~l~~v~IRGnnI~~I~lpd~l~ 78 (126)
T 2y9a_D 18 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYIRGSKIRFLILPDMLK 78 (126)
T ss_dssp EEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCE-EEEEEEECGGGEEEEECCSSCS
T ss_pred EEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEe-ecccEEEeCCEEEEEEcccccc
Confidence 789999999999999999999999999999998888755 8999999999999999999874
No 3
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.3e-21 Score=145.09 Aligned_cols=70 Identities=67% Similarity=1.170 Sum_probs=54.5
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchhhhhHHHHHH
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQV 70 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdeiid~~k~~~~ 70 (155)
|+||||||.+|+|+|.++|.|||++|+||+++.++|+...+++.+||||++|+||++||+++|.++.+.+
T Consensus 29 V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~~~~~ 98 (105)
T 4emh_A 29 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAKQQA 98 (105)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC-------------
T ss_pred EEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhhhhhh
Confidence 6899999999999999999999999999999988897666899999999999999999999998887754
No 4
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.83 E-value=7.5e-21 Score=132.27 Aligned_cols=58 Identities=34% Similarity=0.685 Sum_probs=55.1
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+||||||.+|+|+|.++|.|||++|+||+++.++|+.. +++++||||++|+||++||
T Consensus 18 V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~-~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 18 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEE-EEEEEEECGGGEEEEEECC
T ss_pred EEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEE-EcCeEEEeCCEEEEEEcCC
Confidence 689999999999999999999999999999998888755 8999999999999999997
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.73 E-value=6.1e-18 Score=117.23 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=52.5
Q ss_pred CEEEecCC-cEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNG-ETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG-~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|+|+|||| .+|.|+|.++|.|||++|+||+++..+++ ...++.++|||++|+||++||+
T Consensus 18 v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~-~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 18 IRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEK-VRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp EEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEE-EEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCc-EeECCeEEEeCCeEEEEEeCCC
Confidence 68999999 99999999999999999999999985444 4489999999999999999985
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.72 E-value=9.3e-18 Score=115.58 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=52.5
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++. ..++.++|||++|+||+.|||
T Consensus 17 V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~-~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 17 VLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVV-KRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp EEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEE-EEEEEEEECGGGEEEEEEC--
T ss_pred EEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCce-eECCEEEECCCEEEEEEeCCC
Confidence 68999999999999999999999999999999765444 489999999999999999975
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.71 E-value=1.2e-17 Score=115.33 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=53.6
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++. ..++.++|||++|+||++||+.
T Consensus 17 V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~-~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 17 VIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVV-RKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEE-EEEEEEEECGGGEEEEEECC--
T ss_pred EEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcE-eECCEEEECCCEEEEEEeCCCC
Confidence 68999999999999999999999999999999866544 4899999999999999999863
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.70 E-value=3.5e-17 Score=116.63 Aligned_cols=60 Identities=33% Similarity=0.437 Sum_probs=53.4
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|+||||.+|.|+|.++|.|||++|+||++.. +|+...+++.++|||++|+||++||+.
T Consensus 19 V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 19 VMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred EEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 689999999999999999999999999999875 565555899999999999999999874
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.69 E-value=4.2e-17 Score=114.10 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=53.1
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++.. .++.++|||++|+||+.||+
T Consensus 22 V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~-~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK-KLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEE-EEEEEEECGGGEEEEEEC--
T ss_pred EEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCcee-ECCEEEECCCEEEEEEecCC
Confidence 689999999999999999999999999999998665554 89999999999999999985
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.68 E-value=6.6e-17 Score=117.06 Aligned_cols=58 Identities=29% Similarity=0.403 Sum_probs=52.9
Q ss_pred CEEEecCC-cEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNG-ETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG-~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+|+|||| .+|.|+|.++|.|||++|+||+++.. ++....++.+||||++|+||.+|+
T Consensus 34 V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 34 VGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-GVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp EEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-TEEEEECCSEEECGGGEEEEEECC
T ss_pred EEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-CCeEeEcCEEEEcCCeEEEEEeCC
Confidence 68999999 99999999999999999999999864 444458999999999999999986
No 11
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.67 E-value=8.9e-17 Score=111.59 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=49.9
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++.. .++.++|||++|.||+..|++
T Consensus 17 V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~-~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 17 LSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN-NIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-----CBSSEEECSSSEEEEEC----
T ss_pred EEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEe-EcCEEEECCCeEEEEEeccCC
Confidence 689999999999999999999999999999998766654 899999999999999987753
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.65 E-value=1.4e-16 Score=111.56 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=51.9
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+|+|+||.+|.|+|.++|.|||++|+||+++ +++....++.++|||++|+||+.||
T Consensus 24 V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 24 VLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp EEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred EEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCCEEEEEEeCC
Confidence 68999999999999999999999999999999 3444458999999999999999986
No 13
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.65 E-value=1.3e-16 Score=110.34 Aligned_cols=58 Identities=29% Similarity=0.477 Sum_probs=51.7
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++. +++...+++.++|||++|+||+..|
T Consensus 17 V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 17 VLIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp EEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred EEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecEEEEcCCeEEEEEecC
Confidence 689999999999999999999999999999886 4555558999999999999998765
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.62 E-value=5.2e-16 Score=109.29 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=50.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEe
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~ 56 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++ ...++.++|||++|+||+
T Consensus 28 V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~-~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 28 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEV-TRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEE-EEEEEEEEECGGGEEEEE
T ss_pred EEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCc-ccCCCEEEECCCEEEEEE
Confidence 6899999999999999999999999999999976544 448999999999999986
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.61 E-value=1.1e-15 Score=111.25 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=52.0
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+|+||||.+|.|+|.++|.|||++|+||+++..+++....++.++|||++|.||....
T Consensus 33 V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 33 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp EEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred EEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 68999999999999999999999999999998734443448999999999999998653
No 16
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.60 E-value=1.4e-15 Score=116.35 Aligned_cols=66 Identities=27% Similarity=0.373 Sum_probs=58.0
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchhhhhHHHHHHh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQ 71 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdeiid~~k~~~~~ 71 (155)
|+|+||||.+|.|+|.++|.|||++|+||++++ +. +++.++|||++|+||++|++.+|....+++.
T Consensus 13 V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~~---~lg~v~IRG~nI~~I~~~d~~~d~~~f~~~~ 78 (130)
T 1m5q_A 13 VQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--GE---KFNRVFIMYRYIVHIDSTERRIDMREFAKQA 78 (130)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--CC---EEEEEEECGGGEEEEEECCCCCCHHHHHHHH
T ss_pred EEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--CC---EeceEEEeCCeEEEEEcCCcccCHHHHHHHH
Confidence 689999999999999999999999999999984 43 6799999999999999999887776555443
No 17
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.8e-15 Score=107.78 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=52.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCC------CceeccCCeEEEeCCeEEEEecCchhhh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRD------GDKFWRMPECYIRGSMIKYLRIPDEIID 63 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~d------G~~~~~l~~ifIRGnnIRyI~LPdeiid 63 (155)
|.|+|++|.+|.|+|.++|.|||++|+||+++..+ +.....++.++|||++|.||..+++..|
T Consensus 23 V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~~d 91 (96)
T 3bw1_A 23 VYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSEDDD 91 (96)
T ss_dssp EEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC----
T ss_pred EEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcccc
Confidence 68999999999999999999999999999987532 3334578999999999999999987644
No 18
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.55 E-value=4.1e-15 Score=105.66 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=52.1
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcC---------CCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR---------DGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~---------dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|.|+|+||.+|.|+|.++|.|||++|+||+++.. ++.....++.++|||++|.||++|++
T Consensus 17 V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 17 MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp EEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred EEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 6899999999999999999999999999998631 23334578999999999999999875
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.55 E-value=1.2e-14 Score=105.25 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=52.3
Q ss_pred CEEEe----cCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVEL----KNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVEL----KNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|.|+| ++|.+|.|+|.++|.|||++|+||+++..+++...+++.++|||++|.||+.+|
T Consensus 29 v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred EEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 57888 999999999999999999999999999765555558999999999999999775
No 20
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.50 E-value=1.7e-14 Score=108.28 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=51.4
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCC---------Cce-----eccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRD---------GDK-----FWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~d---------G~~-----~~~l~~ifIRGnnIRyI~LPde 60 (155)
|+|+|++|.+|.|+|.++|.||||+|+||+++..+ |+. ...++.++|||++|.||..+++
T Consensus 41 V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~~ 114 (121)
T 2fwk_A 41 IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGD 114 (121)
T ss_dssp CEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSSC
T ss_pred EEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecCC
Confidence 78999999999999999999999999999987632 433 4579999999999999998765
No 21
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.47 E-value=8.7e-14 Score=100.38 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=50.2
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcC----CCc--------eeccCCeEEEeCCeEEEEecCc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR----DGD--------KFWRMPECYIRGSMIKYLRIPD 59 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~----dG~--------~~~~l~~ifIRGnnIRyI~LPd 59 (155)
|+|+|++|.+|.|+|.++|.|||++|+||+++.. +++ ....++.++|||++|.+|..|-
T Consensus 22 V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p~~ 92 (93)
T 4emg_A 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPPR 92 (93)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEECCC
T ss_pred EEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEecC
Confidence 6899999999999999999999999999998754 231 2347899999999999998763
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.45 E-value=8.7e-14 Score=103.94 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCC------Cce-------eccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRD------GDK-------FWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~d------G~~-------~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|.|+|+||.+|.|+|.++|.|||++|+||+++... ++. ...++.+||||++|.||..++..
T Consensus 42 V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~~~ 115 (118)
T 1b34_B 42 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLI 115 (118)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECCCC
T ss_pred EEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCchh
Confidence 68999999999999999999999999999987421 111 11478999999999999998764
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.44 E-value=2e-13 Score=101.95 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=51.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCC------ceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDG------DKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG------~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|.|+|++|.+|.|+|.++|.||||+|+||+++..+. +....++.++|||++|.+|..+|..
T Consensus 36 V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 36 IQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp EEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred EEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 689999999999999999999999999999986442 2344789999999999999998853
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.41 E-value=3.3e-13 Score=112.26 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=52.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcC---------CCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSR---------DGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~---------dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|.|+|+||.+|.|+|.++|.||||+|+||+|+.. +++....++.+||||+||.+|.+.+.
T Consensus 17 V~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~p 85 (231)
T 3pgw_B 17 MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (231)
T ss_pred EEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCC
Confidence 6899999999999999999999999999999741 23344579999999999999998764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.64 E-value=0.00013 Score=52.48 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=45.7
Q ss_pred CEEEecCCcEEEEEEEEec-cccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCD-HWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD-~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|.|.|.||.+|+|.|.++| ...|+.|.|+ . +++ .+..++|-|..|+-|.+-++-
T Consensus 20 V~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~-~~~---~~~~~iI~G~aI~eI~v~~~~ 74 (86)
T 1y96_A 20 VRVTASEKNEYKGWVLTTDPVSANIVLVNF---L-EDG---SMSVTGIMGHAVQTVETMNEG 74 (86)
T ss_dssp EEEEETTTEEEEEEEEEECTTTCCEEEEEE---C-TTS---CEEEEEECGGGEEEEEEEECC
T ss_pred EEEEEcCCCEEEEEEEEECCCceEEEEeec---c-cCC---eEEEEEEecceEEEEEEecch
Confidence 6799999999999999999 7999999999 2 333 347799999999998876654
No 26
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=91.79 E-value=0.13 Score=35.61 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.9
Q ss_pred CEEEecCCcEEEEEEEEecccc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWM 22 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~M 22 (155)
|+|-|.||..++|.+.++|.|+
T Consensus 28 Vtv~L~NG~~l~G~I~~fD~ft 49 (71)
T 2qtx_A 28 VKIFLRNGEVLDAEVTGVSNYE 49 (71)
T ss_dssp EEEEETTSCEEEEEEEEECSSE
T ss_pred EEEEEeCCeEEEEEEEEEcceE
Confidence 6899999999999999999997
No 27
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=90.79 E-value=0.19 Score=35.39 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=21.0
Q ss_pred CEEEecCCcEEEEEEEEecccc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWM 22 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~M 22 (155)
|+|-|.||..++|.+.++|.|+
T Consensus 26 Vtv~L~nG~~l~G~I~~fD~f~ 47 (78)
T 3ahu_A 26 VTVFLLNGFQLRGQVKGFDNFT 47 (78)
T ss_dssp EEEEETTSCEEEEEEEEECSSE
T ss_pred EEEEEeCCeEEEEEEEEEcceE
Confidence 6899999999999999999997
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=90.70 E-value=0.2 Score=34.80 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=32.4
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCch
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPde 60 (155)
|+|.|.||..+.|.+.++|.|.=+ |+ ++ ...+|-=..|.+|.....
T Consensus 24 Vti~L~nG~~l~G~I~~fD~f~vl-L~-------~~------~~~LIYKhAIsTI~p~~~ 69 (74)
T 2ylb_A 24 VSIYLVNGIKLQGQIESFDQFVIL-LK-------NT------VSQMVYKHAISTVVPSRP 69 (74)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEE-EE-------SS------SEEEEEGGGEEEEEESSC
T ss_pred EEEEEeCCCEEEEEEEEECCcEEE-EE-------CC------ceEEEEeeeEEEEeEccc
Confidence 689999999999999999999622 22 12 224666666777665443
No 29
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=90.65 E-value=0.19 Score=35.69 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=21.0
Q ss_pred CEEEecCCcEEEEEEEEecccc
Q psy1175 1 MLVELKNGETYNGHLVNCDHWM 22 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~M 22 (155)
|+|-|.||..++|.+.++|.|+
T Consensus 22 Vtv~L~NG~~l~G~I~~fD~ft 43 (82)
T 1u1s_A 22 VSIYLVNGIKLQGQIESFDQFV 43 (82)
T ss_dssp EEEEETTSCEEEEEEEEECSSE
T ss_pred EEEEEeCCcEEEEEEEEEcceE
Confidence 6899999999999999999997
No 30
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=89.93 E-value=0.25 Score=34.56 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=31.6
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|.|.||..+.|.+.++|.|+=+. + .+|++ .+|-=..|.+|.....+
T Consensus 22 VtI~L~nG~~l~G~I~~fD~f~VlL-~------~~g~~------qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 22 VTVFFLNGFQMKGVIEEYDKYVVSL-N------SQGKQ------HLIYKHAISTYTVETEG 69 (77)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEEE-E------ETTEE------EEEEGGGEEEEEC----
T ss_pred EEEEEeCCCEEEEEEEEECCcEEEE-E------ECCee------EEEEeeeEEEEeECccc
Confidence 6899999999999999999996222 2 14433 25555667776654443
No 31
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=88.91 E-value=0.32 Score=34.24 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.2
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|.|.||..+.|.+.++|.|+=+ |+ +|+. .+|-=..|.+|....++
T Consensus 23 VtI~LvnG~~L~G~I~~fD~f~Vl-L~-------~g~~------qLIYKhAISTI~P~~~v 69 (79)
T 3sb2_A 23 VSIYLVNGIKLQGHVESFDQYVVL-LR-------NTVT------QMVYKHAISTVVPARAV 69 (79)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEE-EE-------SSSE------EEEEGGGEEEEEESSCC
T ss_pred EEEEEeCCCEEEEEEEEECCcEEE-EE-------CCce------EEEEeeeEEEEeecCce
Confidence 689999999999999999999633 21 3432 25666678887665553
No 32
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=88.46 E-value=0.41 Score=36.50 Aligned_cols=45 Identities=33% Similarity=0.202 Sum_probs=32.9
Q ss_pred CEEEecCCcEEEEEEEEeccccceEE--eeEEEEcCCCceeccCCeEEEeCCeEEEEec
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINL--REVICTSRDGDKFWRMPECYIRGSMIKYLRI 57 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~L--knV~~t~~dG~~~~~l~~ifIRGnnIRyI~L 57 (155)
|.|+||+|..++|+|..+|.- .|+| ++|... . .-|+.+.|.=+.+
T Consensus 15 V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~s------~-----~~I~asdI~DLkV 61 (125)
T 4a53_A 15 VEVLLNNDSKARGVITNFDSS-NSILQLRLANDS------T-----KSIVTKDIKDLRI 61 (125)
T ss_dssp EEEEETTSCEEEEEEEEEETT-TTEEEEEETTTE------E-----EEEEGGGEEEEEE
T ss_pred EEEEECCCCEeeEEEEeecCC-eeEEeccccccc------c-----ceeecccccceee
Confidence 689999999999999999863 4555 888321 1 1677777765544
No 33
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=87.92 E-value=0.39 Score=35.50 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=34.0
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecCchh
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LPdei 61 (155)
|+|.|.||..+.|++.++|.|+=+ |+ ++ ...+|-=..|.+|.....+
T Consensus 24 VtI~LvNG~~L~G~I~~fD~f~Vl-L~-------~~------kqqLIYKHAISTI~p~~~v 70 (104)
T 2y90_A 24 VSIYLVNGIKLQGQIESFDQFVIL-LK-------NT------VSQMVYKHAISTVVPSRPV 70 (104)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEE-EE-------SS------SEEEEEGGGEEEEEESSCC
T ss_pred EEEEEeCCCEEEEEEEEECCcEEE-EE-------CC------ceEEEEeeeeEEEeecccc
Confidence 689999999999999999999622 22 12 2245666678887766554
No 34
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=82.48 E-value=3.3 Score=29.55 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=42.6
Q ss_pred CEEEecCCc-EEEEEEEEeccc-cceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEec
Q psy1175 1 MLVELKNGE-TYNGHLVNCDHW-MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRI 57 (155)
Q Consensus 1 VtVELKNG~-~y~GtL~svD~~-MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~L 57 (155)
|.|+-+++. .|+|.|..+|.. =+++|.+|. ++|-+. ...++.++++-|.-+.+
T Consensus 12 VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~-~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 12 VSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKC-LVPEVTFRAGDITELKI 66 (84)
T ss_dssp EEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEEC-SSSEEEEEGGGCSEEEE
T ss_pred EEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCC-CCcEEEEEecChhheEE
Confidence 567888898 999999999985 589999994 467644 56889999988776555
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=82.19 E-value=6.1 Score=28.30 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=45.1
Q ss_pred EEEecCCcEEEEEEEEeccc-cceEEeeEEEEcCCCcee--------ccCCeEEEeCCeEEEEecCch
Q psy1175 2 LVELKNGETYNGHLVNCDHW-MNINLREVICTSRDGDKF--------WRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 2 tVELKNG~~y~GtL~svD~~-MNL~LknV~~t~~dG~~~--------~~l~~ifIRGnnIRyI~LPde 60 (155)
.+--|.+.-|.|+|..+|.- --+.|+||....-+|.+. .-++.+.-||+-|+-+.+-+.
T Consensus 17 SLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 17 SLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp EEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred EEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 45568899999999999985 579999999875444221 124788999999999887543
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=75.18 E-value=5.9 Score=28.77 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEecCCcEEEEEEEEeccc-cceEEeeEEEEcCCCce----e----ccCCeEEEeCCeEEEEecC
Q psy1175 2 LVELKNGETYNGHLVNCDHW-MNINLREVICTSRDGDK----F----WRMPECYIRGSMIKYLRIP 58 (155)
Q Consensus 2 tVELKNG~~y~GtL~svD~~-MNL~LknV~~t~~dG~~----~----~~l~~ifIRGnnIRyI~LP 58 (155)
.+--|.+.-|.|+|..+|.- --+.|+||....-+|.+ + .-++.+.-||+-|+-+.+-
T Consensus 23 SLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~ 88 (95)
T 2fb7_A 23 SLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVC 88 (95)
T ss_dssp EEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEES
T ss_pred EEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEe
Confidence 45568899999999999974 57999999876533321 1 2358899999999998874
No 37
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=68.92 E-value=4.4 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.0
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEe
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~ 56 (155)
|.|+|-+|..+.|.|...|.+-= .| .+.++. ...|--..|.||.
T Consensus 24 V~I~L~tG~~l~G~i~WQD~~cl-~L-----~~~~~~------~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 24 VEIKLLTGDSLFGTIRWQDTDGL-GL-----VDDSER------STIVRLAAIAYIT 67 (70)
T ss_dssp EEEEETTSCEEEEEEEEECSSEE-EE-----ECTTCC------EEEEEGGGEEEEE
T ss_pred EEEEecCCCEEEEEEEEeCCCEE-EE-----EcCCCC------eEEEEeeeeEEEe
Confidence 57999999999999999999741 12 222332 2456666676654
No 38
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=58.40 E-value=40 Score=24.38 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=42.6
Q ss_pred EEEecCCcEEEEEEEEeccccceEEeeEEEEcC----CCc----------eeccCCeEEEeCCeEEEEecCch
Q psy1175 2 LVELKNGETYNGHLVNCDHWMNINLREVICTSR----DGD----------KFWRMPECYIRGSMIKYLRIPDE 60 (155)
Q Consensus 2 tVELKNG~~y~GtL~svD~~MNL~LknV~~t~~----dG~----------~~~~l~~ifIRGnnIRyI~LPde 60 (155)
.|+|++|+.+-+.+..-|+. +.++|..+..+ +|+ ++..-+.+.||-..|.++.-+.+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 47999999999999988875 89999765432 121 11224789999999999988765
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=58.18 E-value=9.2 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=29.3
Q ss_pred CEEEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEe
Q psy1175 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~ 56 (155)
|.|+|-+|..+.|.|.-.|.+- +.|. +.++. ...|--..|.||.
T Consensus 26 V~I~L~tGd~l~G~i~WQD~~c-l~L~-----~~~~~------~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 26 VEIKLVTGDAITGRVLWQDPTC-VCIA-----DENSR------QTTIWKQAIAYLQ 69 (72)
T ss_dssp EEEEETTSCEEEEEEEEECSSE-EEEE-----C---C------EEEEEGGGEEEEE
T ss_pred EEEEecCCCEEEEEEEEECCCE-EEEE-----cCCCC------eEEEEeeeeEEEE
Confidence 5789999999999999999974 1221 11222 3466666677764
No 40
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=47.97 E-value=40 Score=23.92 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred CEEEecCCcEEEEEEEEeccc-cceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEecC
Q psy1175 1 MLVELKNGETYNGHLVNCDHW-MNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIP 58 (155)
Q Consensus 1 VtVELKNG~~y~GtL~svD~~-MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~LP 58 (155)
|.+.|+..+++.|+...+|.. .|+..++- .+| ...+++..+|++-|..+++.
T Consensus 32 v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L--~TP----iGv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 32 VSFTLHEGVRVAAHFGATDLDVANFYVSQL--QTP----IGVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp EEEEEGGGCEEEEEEEEECTTCCEEEEEEE--CCT----TCCEEEEEEEGGGEEEEEEC
T ss_pred eEEEEeCCeEEEEEEEecCcccceeEhhhc--CCC----cccchhhhhhcCCEEEEEec
Confidence 568899999999999999985 57776653 223 33568999999999888763
No 41
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=37.37 E-value=46 Score=24.76 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=8.8
Q ss_pred cceeEEEeeeecccccccC
Q psy1175 137 LNMLRVMTMTTDINHGFCF 155 (155)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (155)
+.-++++.-.+.-..||||
T Consensus 115 I~~v~i~~d~~g~~kG~af 133 (177)
T 2f3j_A 115 LKKAAVDYDRSGRSLGTAD 133 (177)
T ss_dssp CSEEEECCCTTSSCSCCEE
T ss_pred eEEEEEEECCCCCEeeEEE
Confidence 3334444333344556665
No 42
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=32.42 E-value=80 Score=21.58 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=30.5
Q ss_pred EEecCCcEEEEEEEEeccccceEEeeEEEEcCCCceeccCCeEEEeCCeEEEEec
Q psy1175 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRI 57 (155)
Q Consensus 3 VELKNG~~y~GtL~svD~~MNL~LknV~~t~~dG~~~~~l~~ifIRGnnIRyI~L 57 (155)
|-.-...+++|+|..+|.-. +.|+||+.+. |+.- .++.++=.-|-+|.+
T Consensus 21 v~vg~ehSFtGiledFDeEv-iLL~dV~D~~--GNk~---k~liv~idDinWimL 69 (71)
T 1ycy_A 21 VSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI--GNRG---KQMLIGLEDINWIML 69 (71)
T ss_dssp EEEC----CEEEEEEECSSE-EEEEEEEETT--EEEE---EEEEEEGGGEEEEEE
T ss_pred EEecCcceeeeehhhcCcce-eehhhHHHHh--cccc---ceeEEEeccceEEEe
Confidence 34456679999999999864 6789988764 4322 455666666666654
No 43
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=28.05 E-value=35 Score=24.79 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=14.3
Q ss_pred CEEEecCCcEEEEEEE
Q psy1175 1 MLVELKNGETYNGHLV 16 (155)
Q Consensus 1 VtVELKNG~~y~GtL~ 16 (155)
|.+||.+|+.+.||+-
T Consensus 31 v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 31 VRIELDDGSMIAGTVA 46 (101)
T ss_dssp EEEEETTSCEEEEEES
T ss_pred EEEEEcCCCeEeeeec
Confidence 5789999999999984
No 44
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=23.56 E-value=1.2e+02 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=24.4
Q ss_pred ecCCcEEEEEE---EEeccccceEEeeEEEEc
Q psy1175 5 LKNGETYNGHL---VNCDHWMNINLREVICTS 33 (155)
Q Consensus 5 LKNG~~y~GtL---~svD~~MNL~LknV~~t~ 33 (155)
+|+..++.|.| ..||+-+.+.|+|+++..
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 45667888988 579999999999999985
No 45
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=22.91 E-value=1e+02 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=24.3
Q ss_pred ecCCcEEEEEE---EEeccccceEEeeEEEEc
Q psy1175 5 LKNGETYNGHL---VNCDHWMNINLREVICTS 33 (155)
Q Consensus 5 LKNG~~y~GtL---~svD~~MNL~LknV~~t~ 33 (155)
+|+..++.|.| ..||+.+.+.|+|+++..
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~ 86 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTV 86 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEe
Confidence 46667888988 468999999999999874
Done!