Your job contains 1 sequence.
>psy1175
MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE
IIDMVKEDQVQRTRQRDSNRGGRGGSNQRGRGGHNMRGMRANNAPKPTLNRNELFYYCGI
ILLITCLFQMLKSQVDLNMLRVMTMTTDINHGFCF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1175
(155 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-1652 - symbol:lsm4 "LSM4 homolog, U6... 360 5.2e-33 1
UNIPROTKB|Q3ZBK6 - symbol:LSM4 "U6 snRNA-associated Sm-li... 359 6.7e-33 1
UNIPROTKB|Q9Y4Z0 - symbol:LSM4 "U6 snRNA-associated Sm-li... 359 6.7e-33 1
MGI|MGI:1354692 - symbol:Lsm4 "LSM4 homolog, U6 small nuc... 353 2.9e-32 1
FB|FBgn0032240 - symbol:CG17768 species:7227 "Drosophila ... 348 9.8e-32 1
TAIR|locus:2180295 - symbol:emb1644 "AT5G27720" species:3... 334 3.0e-30 1
DICTYBASE|DDB_G0287053 - symbol:lsm4 "putative U6 small n... 280 1.6e-24 1
UNIPROTKB|G4MT14 - symbol:MGG_01509 "Glycine rich protein... 280 1.6e-24 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 279 2.0e-24 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 266 4.8e-23 1
WB|WBGene00003078 - symbol:lsm-4 species:6239 "Caenorhabd... 264 7.8e-23 1
SGD|S000000914 - symbol:LSM4 "Lsm (Like Sm) protein" spec... 135 3.6e-09 1
DICTYBASE|DDB_G0273003 - symbol:snrpD3 "putative small nu... 131 9.7e-09 1
POMBASE|SPBC19C2.14 - symbol:smd3 "Sm snRNP core protein ... 127 2.6e-08 1
TAIR|locus:2014589 - symbol:SmD3 "AT1G76300" species:3702... 125 4.2e-08 1
TAIR|locus:2030442 - symbol:AT1G20580 "AT1G20580" species... 124 5.3e-08 1
UNIPROTKB|G4NGM8 - symbol:MGG_04083 "Small nuclear ribonu... 123 6.8e-08 1
CGD|CAL0005718 - symbol:SMD3 species:5476 "Candida albica... 118 2.3e-07 1
SGD|S000004137 - symbol:SMD3 "Core Sm protein Sm D3" spec... 118 2.3e-07 1
UNIPROTKB|E1BY33 - symbol:LSM10 "Uncharacterized protein"... 110 1.6e-06 1
UNIPROTKB|A6QQV3 - symbol:LSM2 "LSM2 protein" species:991... 109 2.1e-06 1
UNIPROTKB|Q9Y333 - symbol:LSM2 "U6 snRNA-associated Sm-li... 109 2.1e-06 1
MGI|MGI:90676 - symbol:Lsm2 "LSM2 homolog, U6 small nucle... 109 2.1e-06 1
ZFIN|ZDB-GENE-000616-10 - symbol:smx5 "smx5" species:7955... 109 2.1e-06 1
ASPGD|ASPL0000047555 - symbol:AN2007 species:162425 "Emer... 108 2.6e-06 1
DICTYBASE|DDB_G0281779 - symbol:lsm2 "putative U6 small n... 107 3.4e-06 1
UNIPROTKB|Q5ZL58 - symbol:SNRPD3 "Uncharacterized protein... 105 5.5e-06 1
UNIPROTKB|F1MZ00 - symbol:SNRPD3 "Uncharacterized protein... 105 5.5e-06 1
UNIPROTKB|B4DJP7 - symbol:SNRPD3 "Small nuclear ribonucle... 105 5.5e-06 1
UNIPROTKB|P62318 - symbol:SNRPD3 "Small nuclear ribonucle... 105 5.5e-06 1
UNIPROTKB|F2Z4Y0 - symbol:SNRPD3 "Uncharacterized protein... 105 5.5e-06 1
UNIPROTKB|P62323 - symbol:snrpd3 "Small nuclear ribonucle... 105 5.5e-06 1
MGI|MGI:1914582 - symbol:Snrpd3 "small nuclear ribonucleo... 105 5.5e-06 1
ZFIN|ZDB-GENE-030131-5219 - symbol:snrpd3l "small nuclear... 105 5.5e-06 1
WB|WBGene00001808 - symbol:gut-2 species:6239 "Caenorhabd... 104 7.0e-06 1
ZFIN|ZDB-GENE-040625-55 - symbol:snrpd3 "small nuclear ri... 101 1.5e-05 1
FB|FBgn0023167 - symbol:SmD3 "Small ribonucleoprotein par... 100 1.9e-05 1
UNIPROTKB|Q969L4 - symbol:LSM10 "U7 snRNA-associated Sm-l... 100 1.9e-05 1
TAIR|locus:2014480 - symbol:LSM2 "AT1G03330" species:3702... 100 1.9e-05 1
UNIPROTKB|A4IFN1 - symbol:LSM10 "Uncharacterized protein"... 97 3.9e-05 1
UNIPROTKB|E2R7Q3 - symbol:LSM10 "Uncharacterized protein"... 96 5.0e-05 1
WB|WBGene00004914 - symbol:snr-1 species:6239 "Caenorhabd... 96 5.0e-05 1
MGI|MGI:2151045 - symbol:Lsm10 "U7 snRNP-specific Sm-like... 92 0.00013 1
RGD|1584914 - symbol:Lsm10 "LSM10, U7 small nuclear RNA a... 92 0.00013 1
WB|WBGene00004916 - symbol:snr-3 species:6239 "Caenorhabd... 91 0.00017 1
UNIPROTKB|I3LGB3 - symbol:LSM2 "Uncharacterized protein" ... 90 0.00021 1
UNIPROTKB|G4MTQ6 - symbol:MGG_04741 "Small nuclear ribonu... 89 0.00027 1
ASPGD|ASPL0000048203 - symbol:smd1 species:162425 "Emeric... 88 0.00035 1
CGD|CAL0000979 - symbol:orf19.7673 species:5476 "Candida ... 87 0.00045 1
ASPGD|ASPL0000065787 - symbol:AN10963 species:162425 "Eme... 86 0.00057 1
UNIPROTKB|G4NCP9 - symbol:MGG_00355 "U6 snRNA-associated ... 85 0.00072 1
SGD|S000000122 - symbol:LSM2 "Lsm (Like Sm) protein" spec... 85 0.00072 1
POMBASE|SPCC1620.01c - symbol:lsm2 "U6 snRNP-associated p... 84 0.00093 1
FB|FBgn0261933 - symbol:SmD1 "Small ribonucleoprotein par... 86 0.00095 1
>ZFIN|ZDB-GENE-040426-1652 [details] [associations]
symbol:lsm4 "LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1652 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:BX936438 EMBL:BC059435 EMBL:BC062285 IPI:IPI00505813
RefSeq:NP_956990.1 UniGene:Dr.159006 STRING:Q6P6E4
Ensembl:ENSDART00000037824 GeneID:393669 KEGG:dre:393669
InParanoid:Q6P6E4 NextBio:20814675 Uniprot:Q6P6E4
Length = 143
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQR 72
IIDMVKE+ V +
Sbjct: 75 IIDMVKEEVVSK 86
>UNIPROTKB|Q3ZBK6 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 EMBL:BC103243 IPI:IPI00718624
RefSeq:NP_001030513.1 UniGene:Bt.49560 ProteinModelPortal:Q3ZBK6
SMR:Q3ZBK6 STRING:Q3ZBK6 PRIDE:Q3ZBK6 Ensembl:ENSBTAT00000011312
GeneID:613634 KEGG:bta:613634 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 InParanoid:Q3ZBK6
OMA:GMQQQKQ OrthoDB:EOG4T784T NextBio:20898680 InterPro:IPR027141
PANTHER:PTHR23338 Uniprot:Q3ZBK6
Length = 139
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQR 72
IIDMVKE+ V +
Sbjct: 75 IIDMVKEEVVAK 86
>UNIPROTKB|Q9Y4Z0 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005688 "U6
snRNP" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043928 GO:GO:0005688 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486
CTD:25804 HOGENOM:HOG000182713 OMA:GMQQQKQ OrthoDB:EOG4T784T
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:AJ238096 EMBL:AF182290
EMBL:AF117235 EMBL:AF251218 EMBL:BC000387 EMBL:BC003652
EMBL:BC022198 EMBL:BC023665 IPI:IPI00294955 RefSeq:NP_036453.1
UniGene:Hs.515255 ProteinModelPortal:Q9Y4Z0 SMR:Q9Y4Z0
DIP:DIP-31209N IntAct:Q9Y4Z0 MINT:MINT-1469332 STRING:Q9Y4Z0
PhosphoSite:Q9Y4Z0 DMDM:10720082 PaxDb:Q9Y4Z0 PeptideAtlas:Q9Y4Z0
PRIDE:Q9Y4Z0 DNASU:25804 Ensembl:ENST00000252816 GeneID:25804
KEGG:hsa:25804 UCSC:uc002niq.3 GeneCards:GC19M018417
HGNC:HGNC:17259 HPA:HPA040932 MIM:607284 neXtProt:NX_Q9Y4Z0
PharmGKB:PA134906569 InParanoid:Q9Y4Z0 PhylomeDB:Q9Y4Z0
ChiTaRS:LSM4 GenomeRNAi:25804 NextBio:47015 Bgee:Q9Y4Z0
CleanEx:HS_LSM4 Genevestigator:Q9Y4Z0 GermOnline:ENSG00000130520
Uniprot:Q9Y4Z0
Length = 139
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKEDQVQR 72
IIDMVKE+ V +
Sbjct: 75 IIDMVKEEVVAK 86
>MGI|MGI:1354692 [details] [associations]
symbol:Lsm4 "LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1354692
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:AJ249439 IPI:IPI00134784 RefSeq:NP_056631.2 UniGene:Mm.248188
ProteinModelPortal:Q9QXA5 SMR:Q9QXA5 STRING:Q9QXA5
PhosphoSite:Q9QXA5 PaxDb:Q9QXA5 PRIDE:Q9QXA5 GeneID:50783
KEGG:mmu:50783 InParanoid:Q9QXA5 NextBio:307741 Bgee:Q9QXA5
Genevestigator:Q9QXA5 GermOnline:ENSMUSG00000031848 Uniprot:Q9QXA5
Length = 137
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 63/68 (92%), Positives = 67/68 (98%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD+WMNINLREVICTSRDGDKFWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKED 68
IIDMV+E+
Sbjct: 75 IIDMVREE 82
>FB|FBgn0032240 [details] [associations]
symbol:CG17768 species:7227 "Drosophila melanogaster"
[GO:0017070 "U6 snRNA binding" evidence=ISS] INTERPRO:IPR001163
EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00610000086173 InterPro:IPR027141 PANTHER:PTHR23338
UniGene:Dm.13910 EMBL:BT044323 RefSeq:NP_001027236.1
RefSeq:NP_001188778.1 SMR:Q9VKW8 IntAct:Q9VKW8 MINT:MINT-774206
STRING:Q9VKW8 EnsemblMetazoa:FBtr0100253 EnsemblMetazoa:FBtr0304111
GeneID:3772012 KEGG:dme:Dmel_CG17768 UCSC:CG17768-RA
FlyBase:FBgn0032240 InParanoid:Q9VKW8 OMA:NQRAPRS NextBio:852113
Uniprot:Q9VKW8
Length = 154
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 61/68 (89%), Positives = 66/68 (97%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLV+CD WMNINLR+VICTS+DGD+FWRMPECYIRGS IKYLRIPDE
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 74
Query: 61 IIDMVKED 68
+IDMVKED
Sbjct: 75 VIDMVKED 82
>TAIR|locus:2180295 [details] [associations]
symbol:emb1644 "AT5G27720" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS]
INTERPRO:IPR001163 EMBL:CP002688 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 OMA:NRNTFGG IPI:IPI00529680
RefSeq:NP_198124.1 UniGene:At.43840 ProteinModelPortal:F4K4E3
SMR:F4K4E3 PRIDE:F4K4E3 EnsemblPlants:AT5G27720.1 GeneID:832834
KEGG:ath:AT5G27720 Uniprot:F4K4E3
Length = 129
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 57/71 (80%), Positives = 67/71 (94%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHLVNCD WMNI+LREVICTS+DGD+FWRMPECYIRG+ IKYLR+PDE
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 61 IIDMVKEDQVQ 71
+ID V+E++ +
Sbjct: 75 VIDKVQEEKTR 85
>DICTYBASE|DDB_G0287053 [details] [associations]
symbol:lsm4 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0287053
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0003723 GO:GO:0006402 GO:GO:0000398 EMBL:AAFI02000096
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_637396.1 HSSP:P62314 ProteinModelPortal:Q54KX4
STRING:Q54KX4 EnsemblProtists:DDB0233378 GeneID:8625927
KEGG:ddi:DDB_G0287053 OMA:NRNTFGG Uniprot:Q54KX4
Length = 177
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 50/74 (67%), Positives = 63/74 (85%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
++VELKNGETYNG LVNCD+WMNINL+ VI TS+D DKFW++ CYIRG+ IKY+ +PDE
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 61 IIDMV-KEDQVQRT 73
IID+V +E+Q RT
Sbjct: 75 IIDLVAEEEQTLRT 88
>UNIPROTKB|G4MT14 [details] [associations]
symbol:MGG_01509 "Glycine rich protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_003714480.1 ProteinModelPortal:G4MT14
EnsemblFungi:MGG_01509T0 GeneID:2679152 KEGG:mgr:MGG_01509
Uniprot:G4MT14
Length = 121
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 50/71 (70%), Positives = 59/71 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
M+VELKNGET NGHLV CD WMN+ LREV+ TS DGDKF R+PE Y++G+ IKYLR+PDE
Sbjct: 1 MMVELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPDE 60
Query: 61 IIDMVKEDQVQ 71
+ID VKE Q Q
Sbjct: 61 VIDQVKEQQQQ 71
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 50/69 (72%), Positives = 61/69 (88%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGET NGHL NCD+WMN+ LREV+ TS +GD+F+++PE Y+RG+ IKYLRIP+E
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVRGNNIKYLRIPEE 74
Query: 61 IIDMVKEDQ 69
IIDMVKE Q
Sbjct: 75 IIDMVKEQQ 83
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+LVELKNGET+NGHL NCD++MN+ LREVI T DGDKF+R+PECYIRG+ IKYLRI DE
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 61 IIDMVKEDQVQR 72
++ V + Q Q+
Sbjct: 75 VLSQVAKQQAQQ 86
>WB|WBGene00003078 [details] [associations]
symbol:lsm-4 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0008380 GO:GO:0006397 GO:GO:0010171 GO:GO:0040011
GO:GO:0003723 GO:GO:0030529 GO:GO:0007281 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:FO080735 PIR:T16234
RefSeq:NP_495514.1 ProteinModelPortal:Q19952 SMR:Q19952
IntAct:Q19952 STRING:Q19952 PaxDb:Q19952 EnsemblMetazoa:F32A5.7
GeneID:174193 KEGG:cel:CELE_F32A5.7 UCSC:F32A5.7 CTD:3772280
WormBase:F32A5.7 InParanoid:Q19952 NextBio:882941 Uniprot:Q19952
Length = 123
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 49/74 (66%), Positives = 62/74 (83%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
MLVELKNGETYNGHL CD WMNI+L +VI TS+DGDKF++M E Y+RGS IKYLRIP+
Sbjct: 16 MLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPET 75
Query: 61 IIDMVKED--QVQR 72
++D+VK + +V+R
Sbjct: 76 VVDLVKTEVNEVRR 89
>SGD|S000000914 [details] [associations]
symbol:LSM4 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
[GO:0017070 "U6 snRNA binding" evidence=IMP;IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
SGD:S000000914 INTERPRO:IPR001163 GO:GO:0005730 EMBL:BK006939
GO:GO:0008033 GO:GO:0000932 GO:GO:0000956 GO:GO:0000398
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18916
GO:GO:0006364 GO:GO:0046540 GO:GO:0017070 GO:GO:0005732
GO:GO:0005688 RefSeq:NP_011037.3 GeneID:856848 KEGG:sce:YER112W
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00610000086173 InterPro:IPR027141
PANTHER:PTHR23338 OrthoDB:EOG49S9H0 EMBL:X82649 EMBL:M97918
PIR:S50615 RefSeq:NP_011041.3 ProteinModelPortal:P40070 SMR:P40070
DIP:DIP-848N IntAct:P40070 MINT:MINT-390432 STRING:P40070
PaxDb:P40070 PeptideAtlas:P40070 EnsemblFungi:YER112W GeneID:856852
KEGG:sce:YER116C CYGD:YER112w OMA:IMDYAKE NextBio:983177
Genevestigator:P40070 GermOnline:YER112W Uniprot:P40070
Length = 187
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVI-------CTSRDG---DKFWRMPECYIRGS 50
M +ELKNGE G L N D+WMN+ L V S D K ++ E YIRG+
Sbjct: 15 MQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGT 74
Query: 51 MIKYLRIPDEIIDMVKE 67
IK++++ D IID VK+
Sbjct: 75 FIKFIKLQDNIIDKVKQ 91
>DICTYBASE|DDB_G0273003 [details] [associations]
symbol:snrpD3 "putative small nuclear
ribonucleoprotein D3" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0273003
INTERPRO:IPR001163 GenomeReviews:CM000151_GR EMBL:AAFI02000008
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11088 RefSeq:XP_001134627.1 ProteinModelPortal:Q86L45
SMR:Q86L45 STRING:Q86L45 EnsemblProtists:DDB0233194 GeneID:8618627
KEGG:ddi:DDB_G0273003 InParanoid:Q86L45 OMA:HEADGHI
ProtClustDB:CLSZ2847462 Uniprot:Q86L45
Length = 146
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELKNGE Y G L+ + MN ++ + T+RDG +M CY+RGS ++++ +PD
Sbjct: 20 VELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNS-QMEYCYVRGSKVRFIILPD 75
>POMBASE|SPBC19C2.14 [details] [associations]
symbol:smd3 "Sm snRNP core protein Smd3" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=ISS] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IC] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IMP] PomBase:SPBC19C2.14 INTERPRO:IPR001163
GO:GO:0070317 EMBL:CU329671 GO:GO:0003729 GenomeReviews:CU329671_GR
GO:GO:0006995 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000243
GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000182712 KO:K11088 PIR:T39805
RefSeq:NP_595699.1 ProteinModelPortal:Q9UUC6 SMR:Q9UUC6
IntAct:Q9UUC6 STRING:Q9UUC6 EnsemblFungi:SPBC19C2.14.1
GeneID:2540884 KEGG:spo:SPBC19C2.14 OMA:VITIECK OrthoDB:EOG4285B6
NextBio:20802000 Uniprot:Q9UUC6
Length = 97
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL+NG TY G L+ + MN +R++ T+RDG + + + YIRGS I++L +PD
Sbjct: 18 MELENGSTYRGKLIEAEDNMNCQMRDISVTARDG-RVSHLDQVYIRGSHIRFLIVPD 73
>TAIR|locus:2014589 [details] [associations]
symbol:SmD3 "AT1G76300" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA]
INTERPRO:IPR001163 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 EMBL:AC009978
EMBL:AC012394 GO:GO:0016604 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV ProtClustDB:CLSN2682747 EMBL:AF380651 EMBL:AY054149
EMBL:AY087251 IPI:IPI00524355 PIR:E96790 RefSeq:NP_177757.1
UniGene:At.16581 ProteinModelPortal:Q9S7E6 SMR:Q9S7E6 STRING:Q9S7E6
PaxDb:Q9S7E6 PRIDE:Q9S7E6 EnsemblPlants:AT1G76300.1 GeneID:843963
KEGG:ath:AT1G76300 TAIR:At1g76300 InParanoid:Q9S7E6
PhylomeDB:Q9S7E6 Genevestigator:Q9S7E6 Uniprot:Q9S7E6
Length = 128
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 3 VELKNGETYNGHLVNC-DHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VE+K+GE Y G ++ C D+W N L + T++DG K ++ +IRGS++++L IPD
Sbjct: 22 VEMKSGELYRGSMIECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSLVRFLVIPD 77
>TAIR|locus:2030442 [details] [associations]
symbol:AT1G20580 "AT1G20580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] INTERPRO:IPR001163 EMBL:CP002684
GO:GO:0005829 GO:GO:0005730 EMBL:AC069251 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 HSSP:P62314 KO:K11088 UniGene:At.51694
OMA:HEADGHI EMBL:AF412086 EMBL:AY093974 IPI:IPI00535052
RefSeq:NP_564119.1 UniGene:At.15483 UniGene:At.73171
ProteinModelPortal:Q9LM92 SMR:Q9LM92 STRING:Q9LM92 PRIDE:Q9LM92
EnsemblPlants:AT1G20580.1 GeneID:838647 KEGG:ath:AT1G20580
TAIR:At1g20580 InParanoid:Q9LM92 PhylomeDB:Q9LM92
ProtClustDB:CLSN2682747 Genevestigator:Q9LM92 Uniprot:Q9LM92
Length = 131
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 3 VELKNGETYNGHLVNC-DHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
VELK+GE Y G ++ C D+W N L ++ T++DG K ++ +IRGS ++++ IPD
Sbjct: 22 VELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
>UNIPROTKB|G4NGM8 [details] [associations]
symbol:MGG_04083 "Small nuclear ribonucleoprotein Sm D3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11088 RefSeq:XP_003719755.1
ProteinModelPortal:G4NGM8 SMR:G4NGM8 EnsemblFungi:MGG_04083T0
GeneID:2677512 KEGG:mgr:MGG_04083 Uniprot:G4NGM8
Length = 119
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ G+TY G L++ + MNI LR++ T+RDG + + + YIRGS +++ +PD
Sbjct: 22 LEITTGQTYRGKLIDAEDNMNIQLRDITVTARDG-RVSHLDQVYIRGSHVRFFIVPD 77
>CGD|CAL0005718 [details] [associations]
symbol:SMD3 species:5476 "Candida albicans" [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0070317 "negative regulation of G0
to G1 transition" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] CGD:CAL0005718 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AACQ01000202 EMBL:AACQ01000200 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088 RefSeq:XP_711350.1
RefSeq:XP_711397.1 ProteinModelPortal:Q59NQ6 STRING:Q59NQ6
GeneID:3647011 GeneID:3647060 KEGG:cal:CaO19.11622
KEGG:cal:CaO19.4146 Uniprot:Q59NQ6
Length = 106
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL NG+TY G L+ + MN++L E T K M + +IRGSMI+++ +PD
Sbjct: 20 IELINGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQVFIRGSMIRFISVPD 76
>SGD|S000004137 [details] [associations]
symbol:SMD3 "Core Sm protein Sm D3" species:4932
"Saccharomyces cerevisiae" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003729 "mRNA binding" evidence=IPI] SGD:S000004137
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0003729 GO:GO:0005682
EMBL:BK006945 EMBL:U53879 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0000243 GO:GO:0046540 GO:GO:0071004
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685 EMBL:M65144
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV OrthoDB:EOG4285B6 EMBL:Z73319 EMBL:AY558533 PIR:S29093
RefSeq:NP_013248.1 ProteinModelPortal:P43321 SMR:P43321
DIP:DIP-715N IntAct:P43321 MINT:MINT-517864 STRING:P43321
EnsemblFungi:YLR147C GeneID:850839 KEGG:sce:YLR147C CYGD:YLR147c
NextBio:967120 Genevestigator:P43321 GermOnline:YLR147C
Uniprot:P43321
Length = 101
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+EL G TY G LV + MN+ LR+VI T G M + ++RGS IK++ +PD
Sbjct: 21 LELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFVRGSQIKFIVVPD 76
>UNIPROTKB|E1BY33 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 OMA:WGHQVEL
GO:GO:0005683 GO:GO:0071208 GeneTree:ENSGT00510000048364
InterPro:IPR006649 SMART:SM00651 EMBL:AADN02043869 IPI:IPI00598760
Ensembl:ENSGALT00000003324 Uniprot:E1BY33
Length = 122
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ T G + N D +MN+ L EV T R G+ ++ E ++ G ++Y+ IPDE+
Sbjct: 31 VDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGEVS-QLDEIFVTGRNVRYVHIPDEVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 IRATIERQLQ 99
>UNIPROTKB|A6QQV3 [details] [associations]
symbol:LSM2 "LSM2 protein" species:9913 "Bos taurus"
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 CTD:57819 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:DAAA02055373
EMBL:BC150005 IPI:IPI00702946 RefSeq:NP_001094647.1
UniGene:Bt.43826 SMR:A6QQV3 STRING:A6QQV3
Ensembl:ENSBTAT00000007405 GeneID:538662 KEGG:bta:538662
InParanoid:A6QQV3 NextBio:20877502 Uniprot:A6QQV3
Length = 95
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 73 PADEVDTQLLQDAARK 88
>UNIPROTKB|Q9Y333 [details] [associations]
symbol:LSM2 "U6 snRNA-associated Sm-like protein LSm2"
species:9606 "Homo sapiens" [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;NAS;TAS] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016654 PIRSF:PIRSF016394
EMBL:AF182288 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654
EMBL:BA000025 EMBL:CH471081 Reactome:REACT_1675 EMBL:CR759787
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AF134726 GO:GO:0017070 GO:GO:0043928 Pfam:PF01423
EMBL:AL929592 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 EMBL:AJ245416 EMBL:AF196468
EMBL:AF136977 EMBL:CR542146 EMBL:CR542157 EMBL:CR759915
EMBL:CR925765 EMBL:BC009192 IPI:IPI00032460 RefSeq:NP_067000.1
UniGene:Hs.103106 ProteinModelPortal:Q9Y333 SMR:Q9Y333
DIP:DIP-31139N IntAct:Q9Y333 MINT:MINT-1032572 STRING:Q9Y333
PhosphoSite:Q9Y333 DMDM:10720079 PaxDb:Q9Y333 PeptideAtlas:Q9Y333
PRIDE:Q9Y333 DNASU:57819 Ensembl:ENST00000375661
Ensembl:ENST00000383391 Ensembl:ENST00000424975
Ensembl:ENST00000432122 Ensembl:ENST00000434125
Ensembl:ENST00000455705 GeneID:57819 KEGG:hsa:57819 UCSC:uc003nxg.3
CTD:57819 GeneCards:GC06M031765 HGNC:HGNC:13940 MIM:607282
neXtProt:NX_Q9Y333 PharmGKB:PA25929 HOGENOM:HOG000166937
HOVERGEN:HBG000486 InParanoid:Q9Y333 OrthoDB:EOG4Z36G9
PhylomeDB:Q9Y333 GenomeRNAi:57819 NextBio:64772 ArrayExpress:Q9Y333
Bgee:Q9Y333 CleanEx:HS_LSM2 Genevestigator:Q9Y333
GermOnline:ENSG00000204392 Uniprot:Q9Y333
Length = 95
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 73 PADEVDTQLLQDAARK 88
>MGI|MGI:90676 [details] [associations]
symbol:Lsm2 "LSM2 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR016654
PIRSF:PIRSF016394 EMBL:U85207 MGI:MGI:90676 INTERPRO:IPR001163
GO:GO:0019901 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
PANTHER:PTHR13829 CTD:57819 HOVERGEN:HBG000486 OrthoDB:EOG4Z36G9
EMBL:AF397035 EMBL:AF397036 EMBL:BC014288 IPI:IPI00876050
RefSeq:NP_001103571.1 UniGene:Mm.165735 ProteinModelPortal:O35900
SMR:O35900 STRING:O35900 PhosphoSite:O35900
REPRODUCTION-2DPAGE:O35900 PaxDb:O35900 PRIDE:O35900
Ensembl:ENSMUST00000114011 GeneID:27756 KEGG:mmu:27756
InParanoid:O35900 NextBio:306064 Bgee:O35900 Genevestigator:O35900
GermOnline:ENSMUSG00000007050 Uniprot:O35900
Length = 95
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 73 PADEVDTQLLQDAARK 88
>ZFIN|ZDB-GENE-000616-10 [details] [associations]
symbol:smx5 "smx5" species:7955 "Danio rerio"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 ZFIN:ZDB-GENE-000616-10
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:FP101882
EMBL:BC085441 EMBL:BC152150 IPI:IPI00490217 RefSeq:NP_571571.1
UniGene:Dr.75582 STRING:Q5RKP8 Ensembl:ENSDART00000104394
GeneID:57924 KEGG:dre:57924 CTD:57924 InParanoid:Q5RKP8
NextBio:20891940 Uniprot:Q5RKP8
Length = 95
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQL 72
Query: 58 P-DEIIDMVKEDQVQR 72
P DE+ + +D ++
Sbjct: 73 PADEVDTQLLQDAARK 88
>ASPGD|ASPL0000047555 [details] [associations]
symbol:AN2007 species:162425 "Emericella nidulans"
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR OrthoDB:EOG4285B6
RefSeq:XP_659611.1 ProteinModelPortal:Q5BBS3 SMR:Q5BBS3
STRING:Q5BBS3 EnsemblFungi:CADANIAT00008675 GeneID:2874973
KEGG:ani:AN2007.2 Uniprot:Q5BBS3
Length = 116
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E+ +G Y G L+ + MN+ L+++ T+RDG + + + YIRGS +++ +PD
Sbjct: 25 LEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYIRGSHVRFFIVPD 80
>DICTYBASE|DDB_G0281779 [details] [associations]
symbol:lsm2 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 dictyBase:DDB_G0281779 INTERPRO:IPR001163
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
RefSeq:XP_640635.1 ProteinModelPortal:Q54TF6 STRING:Q54TF6
EnsemblProtists:DDB0233376 GeneID:8623246 KEGG:ddi:DDB_G0281779
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 Uniprot:Q54TF6
Length = 117
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFW-RMPECYIRGSMIKYLRIPDEI 61
VELKN + G L + D ++NI L+++ D + + C+IRGS+++Y+ +P E
Sbjct: 17 VELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAED 76
Query: 62 IDM 64
+D+
Sbjct: 77 VDV 79
>UNIPROTKB|Q5ZL58 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR CTD:6634 HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J
EMBL:AADN02043235 EMBL:AJ719876 IPI:IPI00604392
RefSeq:NP_001007839.1 UniGene:Gga.8376 SMR:Q5ZL58 STRING:Q5ZL58
Ensembl:ENSGALT00000010647 GeneID:416947 KEGG:gga:416947
InParanoid:Q5ZL58 NextBio:20820335 Uniprot:Q5ZL58
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>UNIPROTKB|F1MZ00 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 OMA:RNAPMFR
EMBL:DAAA02045688 IPI:IPI00699558 UniGene:Bt.28460
ProteinModelPortal:F1MZ00 SMR:F1MZ00 PRIDE:F1MZ00
Ensembl:ENSBTAT00000028330 Uniprot:F1MZ00
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>UNIPROTKB|B4DJP7 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AP000356 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 UniGene:Hs.356549 HGNC:HGNC:11160
HOVERGEN:HBG105305 EMBL:AK296173 IPI:IPI00878876 SMR:B4DJP7
STRING:B4DJP7 Ensembl:ENST00000402849 UCSC:uc011aju.2
Uniprot:B4DJP7
Length = 120
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>UNIPROTKB|P62318 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0005683 "U7 snRNP" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 PDB:3VRI PDBsum:3VRI
EMBL:CH471095 Reactome:REACT_1675 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 PDB:1D3B PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D
PDB:3CW1 PDB:3PGW PDBsum:1D3B PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C
PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR EMBL:U15009 EMBL:CR456583 EMBL:AB451249 EMBL:AB451373
EMBL:BC000457 EMBL:BC003150 IPI:IPI00017964 RefSeq:NP_004166.1
UniGene:Hs.356549 ProteinModelPortal:P62318 SMR:P62318
DIP:DIP-31216N IntAct:P62318 MINT:MINT-5002679 STRING:P62318
PhosphoSite:P62318 DMDM:51338667 PaxDb:P62318 PeptideAtlas:P62318
PRIDE:P62318 DNASU:6634 Ensembl:ENST00000215829
Ensembl:ENST00000404603 GeneID:6634 KEGG:hsa:6634 UCSC:uc003aam.1
CTD:6634 GeneCards:GC22P024951 HGNC:HGNC:11160 HPA:HPA001170
MIM:601062 neXtProt:NX_P62318 PharmGKB:PA36001 HOVERGEN:HBG105305
InParanoid:P62318 OrthoDB:EOG4CRM1J PhylomeDB:P62318
EvolutionaryTrace:P62318 GenomeRNAi:6634 NextBio:25845
ArrayExpress:P62318 Bgee:P62318 CleanEx:HS_SNRPD3
Genevestigator:P62318 Uniprot:P62318
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>UNIPROTKB|F2Z4Y0 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
OMA:RNAPMFR CTD:6634 EMBL:FP476093 RefSeq:NP_001230355.1
UniGene:Ssc.6651 ProteinModelPortal:F2Z4Y0 SMR:F2Z4Y0 PRIDE:F2Z4Y0
Ensembl:ENSSSCT00000011019 GeneID:100153480 KEGG:ssc:100153480
Uniprot:F2Z4Y0
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>UNIPROTKB|P62323 [details] [associations]
symbol:snrpd3 "Small nuclear ribonucleoprotein Sm D3"
species:8355 "Xenopus laevis" [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0071208 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338 KO:K11088
CTD:6634 HOVERGEN:HBG105305 EMBL:BC070616 RefSeq:NP_001084936.1
UniGene:Xl.75328 ProteinModelPortal:P62323 SMR:P62323 PRIDE:P62323
GeneID:431993 KEGG:xla:431993 Xenbase:XB-GENE-1014508
Uniprot:P62323
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>MGI|MGI:1914582 [details] [associations]
symbol:Snrpd3 "small nuclear ribonucleoprotein D3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:1914582 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR CTD:6634
HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J EMBL:AK005341 EMBL:AK006692
EMBL:AK019453 EMBL:AK160321 IPI:IPI00119224 RefSeq:NP_080371.1
UniGene:Mm.392843 UniGene:Mm.45151 ProteinModelPortal:P62320
SMR:P62320 IntAct:P62320 MINT:MINT-124943 STRING:P62320
PhosphoSite:P62320 PaxDb:P62320 PRIDE:P62320
Ensembl:ENSMUST00000020397 GeneID:67332 KEGG:mmu:67332
UCSC:uc007fqm.1 InParanoid:P62320 ChiTaRS:SNRPD3 NextBio:324264
Bgee:P62320 CleanEx:MM_SNRPD3 Genevestigator:P62320
GermOnline:ENSMUSG00000020180 Uniprot:P62320
Length = 126
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>ZFIN|ZDB-GENE-030131-5219 [details] [associations]
symbol:snrpd3l "small nuclear ribonucleoprotein D3
polypeptide, like" species:7955 "Danio rerio" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-030131-5219
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 EMBL:CU570693 IPI:IPI00998432
Ensembl:ENSDART00000130407 ArrayExpress:F1QL20 Bgee:F1QL20
Uniprot:F1QL20
Length = 171
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 64 ETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVSQLEQVYIRGSKIRFLILPD 118
>WB|WBGene00001808 [details] [associations]
symbol:gut-2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0016477 GO:GO:0008406 GO:GO:0042127
GO:GO:0007281 GO:GO:0040027 GO:GO:0040020 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12621 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 GeneTree:ENSGT00390000016597 EMBL:Z81118
GeneID:179833 KEGG:cel:CELE_T10G3.6 CTD:179833 PIR:D89269
PIR:T24808 RefSeq:NP_001256511.1 ProteinModelPortal:P92022
SMR:P92022 STRING:P92022 PaxDb:P92022 EnsemblMetazoa:T10G3.6a
WormBase:T10G3.6a InParanoid:P92022 NextBio:907050
ArrayExpress:P92022 Uniprot:P92022
Length = 97
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/66 (33%), Positives = 42/66 (63%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRI 57
++VELKN + G L + D ++N+ L ++ T D ++F M C+IRGS+++Y+++
Sbjct: 15 VVVELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVKNCFIRGSVVRYVQL 72
Query: 58 PDEIID 63
P + +D
Sbjct: 73 PSDQVD 78
>ZFIN|ZDB-GENE-040625-55 [details] [associations]
symbol:snrpd3 "small nuclear ribonucleoprotein D3
polypeptide" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-040625-55
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 CTD:6634 HOVERGEN:HBG105305 EMBL:BC071554
IPI:IPI00630099 RefSeq:NP_001002081.1 UniGene:Dr.83576
ProteinModelPortal:Q6IQ56 SMR:Q6IQ56 STRING:Q6IQ56 GeneID:415171
KEGG:dre:415171 InParanoid:Q6IQ56 NextBio:20818843
ArrayExpress:Q6IQ56 Uniprot:Q6IQ56
Length = 127
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + +N + + T RDG + ++ + YIRGS I++L +PD
Sbjct: 21 ETNTGEVYRGKLIEAEDNVNCQMANITVTYRDG-RVAQLEQVYIRGSKIRFLILPD 75
>FB|FBgn0023167 [details] [associations]
symbol:SmD3 "Small ribonucleoprotein particle protein SmD3"
species:7227 "Drosophila melanogaster" [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0048542 "lymph gland
development" evidence=IMP] [GO:0007422 "peripheral nervous system
development" evidence=NAS;IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;NAS;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0007067 GO:GO:0007052 GO:GO:0030182 GO:GO:0007422
GO:GO:0007417 GO:GO:0007517 GO:GO:0048542 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0045451 GO:GO:0045495 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
EMBL:AF038598 EMBL:AY113465 RefSeq:NP_725106.1 UniGene:Dm.19912
ProteinModelPortal:O44437 SMR:O44437 DIP:DIP-19470N IntAct:O44437
MINT:MINT-306370 STRING:O44437 PaxDb:O44437 PRIDE:O44437
EnsemblMetazoa:FBtr0087986 GeneID:36306 KEGG:dme:Dmel_CG8427
CTD:36306 FlyBase:FBgn0023167 InParanoid:O44437 OMA:RNAPMFR
OrthoDB:EOG44TMRK PhylomeDB:O44437 GenomeRNAi:36306 NextBio:797837
Bgee:O44437 GermOnline:CG8427 Uniprot:O44437
Length = 151
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 4 ELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
E GE Y G L+ + MN + ++ T RDG + + YIRGS I++L +PD
Sbjct: 21 ETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKIRFLILPD 75
>UNIPROTKB|Q969L4 [details] [associations]
symbol:LSM10 "U7 snRNA-associated Sm-like protein LSm10"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 EMBL:AF394685 INTERPRO:IPR001163 GO:GO:0008380
Reactome:REACT_1675 GO:GO:0006397 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 Pfam:PF01423 GO:GO:0008334
EMBL:BC007623 IPI:IPI00056416 RefSeq:NP_116270.1 UniGene:Hs.603131
ProteinModelPortal:Q969L4 SMR:Q969L4 IntAct:Q969L4
MINT:MINT-1485790 STRING:Q969L4 PhosphoSite:Q969L4 DMDM:20177959
PRIDE:Q969L4 Ensembl:ENST00000315732 GeneID:84967 KEGG:hsa:84967
UCSC:uc001cao.1 CTD:84967 GeneCards:GC01M036856 HGNC:HGNC:17562
HPA:HPA048469 neXtProt:NX_Q969L4 PharmGKB:PA134977215
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
InParanoid:Q969L4 OMA:WGHQVEL OrthoDB:EOG4HQDKT PhylomeDB:Q969L4
ChiTaRS:LSM10 GenomeRNAi:84967 NextBio:75496 Bgee:Q969L4
CleanEx:HS_LSM10 Genevestigator:Q969L4 GermOnline:ENSG00000181817
GO:GO:0005683 GO:GO:0071208 Uniprot:Q969L4
Length = 123
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + ++ + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITSTIEQQLQ 99
>TAIR|locus:2014480 [details] [associations]
symbol:LSM2 "AT1G03330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0005829 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
OMA:KLDNISC PANTHER:PTHR13829 EMBL:BT025569 IPI:IPI00543239
RefSeq:NP_563682.1 UniGene:At.42549 ProteinModelPortal:Q1H595
SMR:Q1H595 STRING:Q1H595 PaxDb:Q1H595 PRIDE:Q1H595
EnsemblPlants:AT1G03330.1 GeneID:839526 KEGG:ath:AT1G03330
TAIR:At1g03330 InParanoid:Q1H595 PhylomeDB:Q1H595
ProtClustDB:CLSN2687640 Genevestigator:Q1H595 Uniprot:Q1H595
Length = 93
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIPD 59
VELKN G L + D ++NI L D DK+ M C+IRGS+++Y+++P
Sbjct: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPK 74
Query: 60 EIIDM-VKEDQVQR 72
+ +D+ + D +R
Sbjct: 75 DGVDVDLLHDAARR 88
>UNIPROTKB|A4IFN1 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 EMBL:DAAA02009202 EMBL:BC134669
IPI:IPI00709521 RefSeq:NP_001077250.1 UniGene:Bt.13478
STRING:A4IFN1 Ensembl:ENSBTAT00000033237 GeneID:618089
KEGG:bta:618089 InParanoid:A4IFN1 NextBio:20900995 Uniprot:A4IFN1
Length = 122
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ +G + N D +MNI L +V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVAHGRIDNVDAFMNIRLAQVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDNVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>UNIPROTKB|E2R7Q3 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0005683
"U7 snRNP" evidence=IEA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
OMA:WGHQVEL GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:AAEX03009635 RefSeq:XP_532561.1 ProteinModelPortal:E2R7Q3
Ensembl:ENSCAFT00000005422 GeneID:475335 KEGG:cfa:475335
NextBio:20851186 Uniprot:E2R7Q3
Length = 123
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD++
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDDVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>WB|WBGene00004914 [details] [associations]
symbol:snr-1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0032940 "secretion by cell" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0043186 "P granule" evidence=IDA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0006397 GO:GO:0000003 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 EMBL:AL117204 EMBL:U23937 PIR:T31498
RefSeq:NP_503027.1 ProteinModelPortal:Q17348 SMR:Q17348
IntAct:Q17348 STRING:Q17348 PaxDb:Q17348
EnsemblMetazoa:Y116A8C.42.1 EnsemblMetazoa:Y116A8C.42.2
GeneID:178483 KEGG:cel:CELE_Y116A8C.42 UCSC:Y116A8C.42.1 CTD:178483
WormBase:Y116A8C.42 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 InParanoid:Q17348 KO:K11088 OMA:ESIPIKV
NextBio:901312 Uniprot:Q17348
Length = 136
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+E GE Y G L + MN L E + T RDG + ++ +IRG+ I+++ +PD
Sbjct: 21 LETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMILPD 76
>MGI|MGI:2151045 [details] [associations]
symbol:Lsm10 "U7 snRNP-specific Sm-like protein LSM10"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=ISO] [GO:0017069 "snRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071208 "histone
pre-mRNA DCP binding" evidence=IDA] MGI:MGI:2151045
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0015030
GO:GO:0000084 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017069
Pfam:PF01423 CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640
HOVERGEN:HBG052366 OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683
GO:GO:0071208 EMBL:BC024543 EMBL:BC026476 IPI:IPI00154076
RefSeq:NP_001156738.1 RefSeq:NP_620046.1 UniGene:Mm.41865
ProteinModelPortal:Q8QZX5 SMR:Q8QZX5 STRING:Q8QZX5
PhosphoSite:Q8QZX5 PRIDE:Q8QZX5 Ensembl:ENSMUST00000055575
Ensembl:ENSMUST00000179323 GeneID:116748 KEGG:mmu:116748
GeneTree:ENSGT00510000048364 InParanoid:Q8QZX5 NextBio:369080
Bgee:Q8QZX5 CleanEx:MM_LSM10 Genevestigator:Q8QZX5
GermOnline:ENSMUSG00000050188 InterPro:IPR006649 SMART:SM00651
Uniprot:Q8QZX5
Length = 122
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDGVD 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>RGD|1584914 [details] [associations]
symbol:Lsm10 "LSM10, U7 small nuclear RNA associated"
species:10116 "Rattus norvegicus" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA;ISO] [GO:0005683 "U7 snRNP"
evidence=IEA;ISO] [GO:0015030 "Cajal body" evidence=IEA;ISO]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA;ISO]
RGD:1584914 INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473968 Pfam:PF01423
CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:BC166902 IPI:IPI00369107 RefSeq:NP_001102446.1 UniGene:Rn.3612
STRING:B2RYU1 Ensembl:ENSRNOT00000035637 GeneID:366468
KEGG:rno:366468 UCSC:RGD:1584914 NextBio:689468
Genevestigator:B2RYU1 Uniprot:B2RYU1
Length = 122
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
V+L++ G + N D +MNI L V T R G + + + ++ G ++Y+ IPD +
Sbjct: 31 VDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQV-ELDDLFVTGRNVRYVHIPDGVN 89
Query: 62 IDMVKEDQVQ 71
I E Q+Q
Sbjct: 90 ITATIEQQLQ 99
>WB|WBGene00004916 [details] [associations]
symbol:snr-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0007281
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
EMBL:FO081595 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000182713 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR PIR:T16952 RefSeq:NP_495306.1 ProteinModelPortal:Q10013
SMR:Q10013 IntAct:Q10013 STRING:Q10013 PaxDb:Q10013
EnsemblMetazoa:T28D9.10.1 EnsemblMetazoa:T28D9.10.2 GeneID:174072
KEGG:cel:CELE_T28D9.10 UCSC:T28D9.10.1 CTD:174072 WormBase:T28D9.10
InParanoid:Q10013 NextBio:882385 Uniprot:Q10013
Length = 126
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G ++ D MN +LR V T ++ + ++ IRG+ I+Y+ +PD +
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPLA 75
Query: 62 IDMVKEDQVQR 72
+D + D R
Sbjct: 76 LDTLLIDDEPR 86
>UNIPROTKB|I3LGB3 [details] [associations]
symbol:LSM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR016654
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 PANTHER:PTHR13829 GeneTree:ENSGT00390000016597
Ensembl:ENSSSCT00000025527 Uniprot:I3LGB3
Length = 72
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 13 GHLVNCDHWMNINLREVICTSRDGDKFWRM---PECYIRGSMIKYLRIP-DEIIDMVKED 68
G L + D ++NI L ++ T D +K+ M C+IRGS+++Y+++P DE+ + +D
Sbjct: 4 GTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 61
Query: 69 QVQR 72
++
Sbjct: 62 AARK 65
>UNIPROTKB|G4MTQ6 [details] [associations]
symbol:MGG_04741 "Small nuclear ribonucleoprotein Sm D1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11087 RefSeq:XP_003713702.1
ProteinModelPortal:G4MTQ6 SMR:G4MTQ6 EnsemblFungi:MGG_04741T0
GeneID:2678064 KEGG:mgr:MGG_04741 Uniprot:G4MTQ6
Length = 125
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN LR V T R D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPI-PLDAMNIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQR 72
+D + D +
Sbjct: 76 LDTLLVDDTPK 86
>ASPGD|ASPL0000048203 [details] [associations]
symbol:smd1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 OMA:KMTIKNR
OrthoDB:EOG4F7RVR RefSeq:XP_659709.1 ProteinModelPortal:Q5BBH5
SMR:Q5BBH5 STRING:Q5BBH5 EnsemblFungi:CADANIAT00008778
GeneID:2875679 KEGG:ani:AN2105.2 Uniprot:Q5BBH5
Length = 121
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI- 61
+ELKNG +G + + MN +LR V T + D + IRGS I+Y +PD +
Sbjct: 17 IELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPI-SLDTINIRGSTIRYYILPDSLP 75
Query: 62 IDMVKEDQVQR 72
+D + D +
Sbjct: 76 LDTLLIDDTPK 86
>CGD|CAL0000979 [details] [associations]
symbol:orf19.7673 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] CGD:CAL0000979 INTERPRO:IPR001163 EMBL:AACQ01000032
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 RefSeq:XP_719431.1
ProteinModelPortal:Q5ACG9 STRING:Q5ACG9 GeneID:3638958
KEGG:cal:CaO19.7673 Uniprot:Q5ACG9
Length = 116
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKNG +G L++C+ MN++L+ V D + IRG+ ++ + +PDE+
Sbjct: 20 VELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPIL-LQYINIRGNQVRQILLPDEL 77
>ASPGD|ASPL0000065787 [details] [associations]
symbol:AN10963 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003676 EMBL:BN001304
GO:GO:0000932 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 EnsemblFungi:CADANIAT00000699 Uniprot:C8VBS9
Length = 98
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPEC---YIRGSMIKYLRIPD 59
+ELKN G L + D ++NI L ++ D DK+ + +IRGS+++Y+ +P
Sbjct: 17 IELKNDIRIRGTLKSVDQYLNIKLDDIDVL--DLDKYPHLSSVKNMFIRGSVVRYVVLPR 74
Query: 60 EIIDM-VKEDQVQR 72
+D+ + ED +R
Sbjct: 75 SEVDVGLLEDATRR 88
>UNIPROTKB|G4NCP9 [details] [associations]
symbol:MGG_00355 "U6 snRNA-associated Sm-like protein LSm2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001235
GO:GO:0000932 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12621 PANTHER:PTHR13829
RefSeq:XP_003718727.1 ProteinModelPortal:G4NCP9
EnsemblFungi:MGG_00355T0 GeneID:2674959 KEGG:mgr:MGG_00355
Uniprot:G4NCP9
Length = 97
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREV-ICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
VELKN G L + D ++N+ L ++ + + +IRGS+++Y+ +P
Sbjct: 17 VELKNSIQIRGTLKSVDQYLNLKLDDISVVEDIKYPHLSAVKNVFIRGSVVRYIHLPASH 76
Query: 62 IDM-VKEDQVQR 72
+D+ + ED +R
Sbjct: 77 VDVPLLEDATRR 88
>SGD|S000000122 [details] [associations]
symbol:LSM2 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=TAS] [GO:0003723 "RNA binding"
evidence=IEA;IDA;IPI] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 SGD:S000000122 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 GO:GO:0008033 EMBL:X77291 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
OrthoDB:EOG469V4G EMBL:Z35787 PIR:S45760 RefSeq:NP_009527.1
ProteinModelPortal:P38203 SMR:P38203 DIP:DIP-794N IntAct:P38203
MINT:MINT-383549 STRING:P38203 PaxDb:P38203 PeptideAtlas:P38203
EnsemblFungi:YBL026W GeneID:852255 KEGG:sce:YBL026W CYGD:YBL026w
GeneTree:ENSGT00390000016597 NextBio:970835 Genevestigator:P38203
GermOnline:YBL026W Uniprot:P38203
Length = 95
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTS-RDGDKFWRMPECYIRGSMIKYLRIPD 59
++VELKN G L + D ++N+ L + CT + + +IRGS ++Y+ +
Sbjct: 15 VVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNK 74
Query: 60 EIIDM-VKEDQVQR 72
++D + +D +R
Sbjct: 75 NMVDTNLLQDATRR 88
>POMBASE|SPCC1620.01c [details] [associations]
symbol:lsm2 "U6 snRNP-associated protein core protein
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] InterPro:IPR016654 PIRSF:PIRSF016394
PomBase:SPCC1620.01c INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681 GO:GO:0003723
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
GO:GO:0046540 GO:GO:0045292 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
PIR:T41031 RefSeq:NP_588459.1 ProteinModelPortal:O94408
STRING:O94408 EnsemblFungi:SPCC1620.01c.1 GeneID:2538804
KEGG:spo:SPCC1620.01c OrthoDB:EOG469V4G NextBio:20799986
Uniprot:O94408
Length = 96
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMP---ECYIRGSMIKYLRIPD 59
VELKN + G L + D ++N+ L + D K+ M + +IRGS+++Y+ +
Sbjct: 17 VELKNDMSIRGILKSVDQFLNVKLENISVV--DASKYPHMAAVKDLFIRGSVVRYVHMSS 74
Query: 60 EIIDMV 65
+D +
Sbjct: 75 AYVDTI 80
>FB|FBgn0261933 [details] [associations]
symbol:SmD1 "Small ribonucleoprotein particle protein SmD1"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] INTERPRO:IPR001163
EMBL:AE014296 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR EMBL:AY071359 EMBL:BT032651 RefSeq:NP_524774.1
UniGene:Dm.1823 ProteinModelPortal:Q9VU02 SMR:Q9VU02 DIP:DIP-18826N
IntAct:Q9VU02 MINT:MINT-897207 STRING:Q9VU02 PaxDb:Q9VU02
PRIDE:Q9VU02 EnsemblMetazoa:FBtr0075952 GeneID:44668
KEGG:dme:Dmel_CG10753 CTD:44668 FlyBase:FBgn0261933
InParanoid:Q9VU02 OrthoDB:EOG44MW8P PhylomeDB:Q9VU02
GenomeRNAi:44668 NextBio:837527 Bgee:Q9VU02 GermOnline:CG10753
Uniprot:Q9VU02
Length = 124
Score = 86 (35.3 bits), Expect = 0.00095, P = 0.00095
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 3 VELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDEI 61
+ELKNG +G + D MN +L+ V T ++ D + IRG+ I+Y +PD +
Sbjct: 17 IELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNNIRYFILPDSL 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.142 0.459 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 155 125 0.00091 102 3 11 22 0.43 30
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 593 (63 KB)
Total size of DFA: 149 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.81u 0.17s 10.98t Elapsed: 00:00:01
Total cpu time: 10.81u 0.17s 10.98t Elapsed: 00:00:01
Start: Thu Aug 15 14:23:55 2013 End: Thu Aug 15 14:23:56 2013