RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1175
(155 letters)
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 84.0 bits (208), Expect = 2e-22
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ V L NGE Y G L D+ +NI L + + + +I I ++ +
Sbjct: 13 VQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGE-----KFNRVFIMYRYIVHIDSTER 67
Query: 61 IIDMVK-EDQVQRTR 74
IDM + Q ++
Sbjct: 68 RIDMREFAKQAEKIF 82
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 75.9 bits (187), Expect = 1e-19
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPDE 60
+ +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I+Y +PD
Sbjct: 14 VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDS 72
Query: 61 I 61
+
Sbjct: 73 L 73
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 69.8 bits (171), Expect = 2e-17
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLRIPD 59
+ E GE Y G L+ + MN + + T RDG + ++ + YIRG I++L +PD
Sbjct: 15 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYIRGCKIRFLILPD 72
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Length = 72
Score = 60.5 bits (147), Expect = 8e-14
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYL 55
++V LK G + G L D MN+ L + ++ IRG + ++
Sbjct: 16 VIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVV-RKVGSVVIRGDTVVFV 69
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 74
Score = 58.9 bits (143), Expect = 3e-13
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYL 55
++++LK + G L + D MN+ L + R+ IRG I Y+
Sbjct: 19 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVT-RRLGTVLIRGDNIVYI 72
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 58.9 bits (143), Expect = 4e-13
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYL 55
+LV LK G + G L+ D +N+ L + R + IRG + +
Sbjct: 15 VLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVV-KRYGKIVIRGDNVLAI 68
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 58.2 bits (141), Expect = 7e-13
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYL 55
+LV+LK + G L + D MN+ L + DG ++ IRG + +
Sbjct: 20 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK-KLGTIVIRGDNVILI 73
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 68
Score = 57.8 bits (140), Expect = 7e-13
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 1 MLVELKNGET-YNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR-IP 58
+ V+LK T Y G LV+ D++ N+ L E G + E +IR + + Y+R +P
Sbjct: 9 VGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCNNVLYIRELP 67
Query: 59 D 59
+
Sbjct: 68 N 68
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 71
Score = 57.8 bits (140), Expect = 9e-13
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+LV+L++ G L + D +N+ L + + +RG + ++
Sbjct: 15 VLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY--KRGTMVVRGENVLFIS 68
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 55.1 bits (133), Expect = 1e-11
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 1 MLVELKNGET-YNGHLVNCDHWMNINLREVICTSRDGDKFWRMPECYIRGSMIKYLR 56
+ VE+K E G L D +MN+ L + + K + E +RG+ + ++
Sbjct: 18 IRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE-KVRSLGEIVLRGNNVVLIQ 73
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein
LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Length = 92
Score = 46.4 bits (110), Expect = 4e-08
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKF--------------WRMPECY 46
+ V +K + ++G L D ++N+ L +V D+ R+
Sbjct: 18 IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETIL 77
Query: 47 IRGSMIKYL 55
+ G+ + L
Sbjct: 78 LSGNNVAML 86
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 81
Score = 30.5 bits (69), Expect = 0.018
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDKFWRMPE---------CYIRGSM 51
M L++G + G D MN+ L + + K + E +RG
Sbjct: 11 MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGEN 70
Query: 52 IKYL 55
+ +
Sbjct: 71 LVSM 74
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 93
Score = 27.9 bits (62), Expect = 0.23
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 1 MLVELKNGETYNGHLVNCDHWMNINLREVICTSRDGDK 38
+L+ +N + G + D N+ L V + K
Sbjct: 17 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 54
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 87
Score = 24.5 bits (53), Expect = 3.0
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 34 RDGDKFWRMPECYIRGSMIKYLR 56
+ + + I+G++ YLR
Sbjct: 61 ENPKRAEAYIKLRIKGAIYDYLR 83
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 24.6 bits (53), Expect = 5.7
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 36 GDKFWRMPECYIRGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRG 81
G R + MI++ R + + D++ T++ + G
Sbjct: 198 GMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDG 243
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.4 bits (52), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 48 RGSMIKYLRIPDEIIDMVKEDQVQRTRQRDSNRG 81
RG I+YL +PD + + +++ + + D N G
Sbjct: 228 RGQSIRYL-VPDLVQEYIEKHNLYSSESEDRNAG 260
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 23.8 bits (51), Expect = 7.6
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 79 NRGGRGGSNQRGRGGHNMRGM 99
NR G G RG G +
Sbjct: 20 NRRGAGHRGGRGDAGRDKHEF 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.448
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,707
Number of extensions: 26809
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)