BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11756
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 40 PKCAAC-QGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
P CA C Q ++ I++ALD+ WH + +C+ C +P+A + F S YC +D+ F
Sbjct: 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG 119
Query: 99 NKCQGCRL--PIKDVVVTALNQTWHPDHFVCISCGTKLLYKG-FYEREGNAF-CTACYE 153
KC C+L P VV A + +H F C+ C +L FY E + C A YE
Sbjct: 120 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 101 CQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
C GC I D ++ AL++ WH C C L + F R + +C + +F K
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTK 121
Query: 160 CFGC--GKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCE 202
C C G P T+ + D +H CF C C+R + +G F + E
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME 167
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 158 PKCFGCGKPITETAI-KVHDRKWHEACFRCGRCRRPISGPTF 198
P C GC + I + I K DR WH C +C C P++ F
Sbjct: 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF 102
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 40 PKCAAC-QGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
P+CA C Q ++ I++ LD+ WH +C C++ +A + F AGS YC ED+ F
Sbjct: 7 PQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFS-RAGSVYCKEDFFKRFG 65
Query: 99 NKCQGCR--LPIKDVVVTALNQTWHPDHFVCISCGTKLLYKG-FYERE-GNAFCTACYE 153
KC C+ +P VV A + +H F CI C +L FY E G C YE
Sbjct: 66 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 100 KCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
+C GC I D ++ L++ WH C C +L + F R G+ +C + +F
Sbjct: 8 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCF-SRAGSVYCKEDFFKRFGT 66
Query: 159 KCFGC--GKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCE-ADVVCVECSEKG 214
KC C G P T+ K D +H CF C C R + +G F + E +VC E E
Sbjct: 67 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETA 126
Query: 215 RE 216
++
Sbjct: 127 KQ 128
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 158 PKCFGCGKPITETAI-KVHDRKWHEACFRCGRCRRPISGPTF 198
P+C GC + I + I KV DR WH +C +C C+ ++ F
Sbjct: 7 PQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCF 48
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 40 PKCAAC-QGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
P CA C Q ++ I++ALD+ WH + +C+ C +P+A + F S YC +D+ F
Sbjct: 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG 65
Query: 99 NKCQGCRL--PIKDVVVTALNQTWHPDHFVCISCGTKLLYKG-FYEREGNAF-CTACYE 153
KC C+L P VV A + +H F C+ C +L FY E + C A YE
Sbjct: 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 101 CQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
C GC I D ++ AL++ WH C C L + F R + +C + +F K
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTK 67
Query: 160 CFGC--GKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCE-ADVVCVECSEKGR 215
C C G P T+ + D +H CF C C+R + +G F + E + +VC E +
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 216 E 216
+
Sbjct: 128 Q 128
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 158 PKCFGCGKPITETAI-KVHDRKWHEACFRCGRCRRPISGPTF 198
P C GC + I + I K DR WH C +C C P++ F
Sbjct: 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF 48
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 40 PKCAACQGLI-QNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
P+CA C LI N QA ++ WH +HF C C +A + + + P C Y
Sbjct: 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA 63
Query: 99 NKCQGCRLPIKDVV--VTALNQTWHPDH--FVCISCGTKLLYKGFYEREGNAFCTA 150
CQGC I V VT N +WH F+C C L+ + F EG FC+
Sbjct: 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 119
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 100 KCQGC-RLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
+C GC L + A NQ WH HF C C + L + + C CY
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 159 KCFGCGKPITETAIKV--HDRKWHEA--CFRCGRCRRPISGPTFRVCEADVVC-VECSEK 213
C GC I +V ++ WH + CF C C + + G F E V C VEC ++
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
CYE KF P+C C K +T+ + D+ WH C C C+ P++G F + D CV C
Sbjct: 9 CYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVAC 68
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLN 99
P+CA C + V D+ WH E CT C+ P+A Q+F PYCV + LF +
Sbjct: 16 PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 93 YASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACY 152
Y + F +C C + VT +Q WH + VC C T L + F R+ + +C AC+
Sbjct: 10 YENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACF 69
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 91 EDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTA 150
+D+ ++F KC GC P+ + ++A++ WHP+ FVC C T F+E +G FC
Sbjct: 8 KDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCEL 67
Query: 151 CYE 153
Y
Sbjct: 68 HYH 70
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDY 93
PKC C + + A+D WHPE F C C +T F G P+C Y
Sbjct: 16 PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 156 FCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVC 207
F PKC GC +P+ E + D WH CF CG C S +F + C
Sbjct: 14 FSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFC 65
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 35 ASTMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVE 91
S + +CA C G I + ++ A+D WH +C+ C+ + + +G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 92 DYASLFLNK--CQGC--RLPIKDVVVTALNQTWHPDHFVCISCGTKLL-YKGFYEREGNA 146
DY LF N C C +P ++V+ A +H F C +C +L+ F+ G+
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 147 FC 148
FC
Sbjct: 121 FC 122
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 94 ASLFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKL--LYKGFYEREGNAFCTA 150
SL +C GC I D ++ A++ WH C SC +L + Y + G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 151 CYEGKF--CPKCFGCGK--PITETAIKVHDRKWHEACFRCGRCR-RPISGPTFRVCEADV 205
Y F C CG+ P +E ++ +H CF C CR R + G F +
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 206 VC 207
C
Sbjct: 121 FC 122
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 66
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
S+ + C CR PI+ VV A+ + WH +HFVC C L YER+G A+C Y
Sbjct: 1 GSMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60
Query: 154 GKF 156
F
Sbjct: 61 QLF 63
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S P C AC+ I+ +V A+ K WH EHF C C P + + G YC Y
Sbjct: 1 GSMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60
Query: 95 SLF 97
LF
Sbjct: 61 QLF 63
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISG 195
P C C +PI + ++WH F C +C +P G
Sbjct: 6 PICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG 43
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 39 YPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYAS 95
+ +CA C G I + ++ A+D WH +C+ C+ + + +G C DY
Sbjct: 3 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 62
Query: 96 LFLNK--CQGC--RLPIKDVVVTALNQTWHPDHFVCISCGTKLL-YKGFYEREGNAFC 148
LF N C C +P ++V+ A +H F C +C +L+ F+ G+ FC
Sbjct: 63 LFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 120
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 96 LFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKL--LYKGFYEREGNAFCTACY 152
L +C GC I D ++ A++ WH C SC +L + Y + G C Y
Sbjct: 1 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 60
Query: 153 EGKF--CPKCFGCGK--PITETAIKVHDRKWHEACFRCGRCR-RPISGPTFRVCEADVVC 207
F C CG+ P +E ++ +H CF C CR R + G F + C
Sbjct: 61 IRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 120
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 15 GQGDETDVDVSEALDPPPNAASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIP 74
G + D V A P A P CA C +I+ + AL K+WHPE F C HC+
Sbjct: 4 GSSGDQDTLVQRAEHIP---AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNT 60
Query: 75 IATQKFHVHAGSPYCVEDYASLF 97
+A F G+ YC Y F
Sbjct: 61 MAYIGFVEEKGALYCELCYEKFF 83
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
C C I+ + AL ++WHP+ F C C + Y GF E +G +C CYE F
Sbjct: 28 CAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 154 GKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
GK P C C + I + + WH F C C+ ++ F + + C C EK
Sbjct: 22 GKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 98 LNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKL--LYKGFYEREGNAFCTACYEG 154
L C GC+ I D + A++Q WH D C CG +L + + Y + G C Y
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 155 KFCPK--CFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCEADVVC 207
F C C K I E ++V D+ +H CF+C C++ G + + +D+VC
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 119
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 44 ACQGLIQNI----IVQALDKTWHPEHFRCT--HCRIPIATQKFHVHAGSPYCVEDYASLF 97
C G QNI ++A+D+ WH + C CR+ ++ + G C DY LF
Sbjct: 4 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 98 LNK--CQGC--RLPIKDVVVTALNQTWHPDHFVCISC 130
C C R+ ++ + ++ +H + F C +C
Sbjct: 64 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAAC 100
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 160 CFGCGKPITETAIKVH--DRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
C C KPI + +VH +R WH+ CFRC +C P++ TF + ++C +C+ +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR 63
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 101 CQGCRLPI--KDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
C CR PI V N+ WH F C C L + F ++ C C + P
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 159 KCFGCGKPIT--ETAIKVHDRKWHEACF 184
KC GC K I + ++ WH+ CF
Sbjct: 68 KCKGCFKAIVAGDQNVEYKGTVWHKDCF 95
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 54 VQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPI--KDV 111
V ++ WH FRC C P+A + F C + KC+GC I D
Sbjct: 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQ 81
Query: 112 VVTALNQTWHPDHFVCISCG 131
V WH D F S G
Sbjct: 82 NVEYKGTVWHKDCFSGPSSG 101
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGK 165
V + WH + F C CG L E+EG +C CY F PK FG G+
Sbjct: 52 VIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQ 104
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 159 KCFGCGKPI--TETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
KC CG + E I + WH+ CFRC +C + + T E ++ C C K
Sbjct: 38 KCSRCGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGK 165
V + WH + F C CG L E+EG +C CY F PK FG G+
Sbjct: 52 VIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQ 104
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 139 FYEREGNA-FCTACYEGKFCP-KCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGP 196
F ++ G A C+AC + + K G GKP WH+ CFRC +C + +
Sbjct: 29 FAQKFGGAEKCSACGDSVYAAEKVIGAGKP------------WHKNCFRCAKCGKSLEST 76
Query: 197 TFRVCEADVVCVECSEK 213
T E ++ C C K
Sbjct: 77 TLTEKEGEIYCKGCYAK 93
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 41 KCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
KC+AC + V K WH FRC C + + G YC YA F
Sbjct: 38 KCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNF 95
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C K IT I D+ WH CF C C + ++G F E CV+C
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDC 58
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
C C I +T +Q WH D FVC++C KL + F E +C CY+
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S+ C C I + + D+ WH + F C C +A Q+F YCV+ Y
Sbjct: 1 GSSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60
Query: 95 SL 96
+
Sbjct: 61 NF 62
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKV--HDRKWHEACFRCGRCRRPISGPTFRVCEADVVCV 208
CY+ F C C + I + ++ DR +HE CFRC RC+R ++ F +++++C
Sbjct: 9 CYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCN 68
Query: 209 EC 210
+C
Sbjct: 69 DC 70
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 32 PNAASTMYPKCAACQGLIQNIIVQAL--DKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
P +T CA CQ LI + + D+ +H FRC C+ +A + F C
Sbjct: 8 PCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLC 67
Query: 90 VEDYASLF 97
+ Y S F
Sbjct: 68 NDCYCSAF 75
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C KPIT + ++ WH+ CF C CR+ +SG F + C+ C
Sbjct: 8 CVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNC 58
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 99 NKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACY 152
+ C C+ PI VT Q WH + FVC +C +L + F R+ A+C C+
Sbjct: 6 SGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S+ C C+ I V ++ WH E F CT CR ++ Q+F YC+ +
Sbjct: 1 GSSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFC 60
Query: 95 SLFLN 99
L+ +
Sbjct: 61 DLYAS 65
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 151 CYEGKFCPKCFGCGKPIT-----ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADV 205
CY+ KC GC PIT + + + WH+ CF C +C ++ F + V
Sbjct: 9 CYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQV 68
Query: 206 VCVECSEK 213
C +C++K
Sbjct: 69 YCPDCAKK 76
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 93 YASLFLNKCQGCRLPIKDV-----VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAF 147
Y + KC GC+ PI VV Q+WH F C C L K F + +
Sbjct: 10 YKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVY 69
Query: 148 CTAC 151
C C
Sbjct: 70 CPDC 73
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 41 KCAACQGLIQNI-----IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
KCA C+ I +V ++WH F C C + +A ++F H YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 70
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT-ACYEGKFCPKCFGCGKPITET 170
VT+L + WH C CG L G E EG +C CY F PK FG G + T
Sbjct: 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAESHT 74
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 40 PKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED-YASLF 97
PKC C + V +L K WH +C C + + H G PYC Y+++F
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 60
Query: 98 LNK 100
K
Sbjct: 61 GPK 63
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 92 DYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISC 130
DY L+ +C C I+ VV+AL +T+HPD FVC C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVC 47
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 41 KCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPI 75
+C +C I+ +V AL KT+HP+ F C CR+P
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPF 51
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 152 YEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI 193
Y+ + +CF C + I + + +H CF C CR P
Sbjct: 10 YQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPF 51
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 160 CFGCGKPITETA----IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C KPI+ I D +WH CF CG+C + G F ++ C +C
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 62
Score = 30.8 bits (68), Expect = 0.58, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 101 CQGCRLPIKDVV----VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEG 154
C C PI + + + WH + F C C L+ KGF + FC C G
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
S+ C C I +++A++ +WHPE FRC C+ +A F +AG C
Sbjct: 1 GSSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLC 55
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
C C I V+ A+N +WHP+ F C C L GF + G C C+
Sbjct: 8 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHN 60
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREEG 218
C CG+ I IK + WH CFRC C+ ++ F +C C + + G
Sbjct: 8 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 42 CAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
CA C+ I++ + ALDK WH F+C C + I T ++ G PYC DY + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSV-ILTGEYISKDGVPYCESDYHAQF 73
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 99 NKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
+ C GC+ IK + AL++ WH F C +C + +L + ++G +C + Y +F
Sbjct: 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTC-SVILTGEYISKDGVPYCESDYHAQF 73
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 160 CFGCGKPITE-TAIKVHDRKWHEACFRCGRCRRPISG 195
C GC + I ++ D++WH +CF+C C ++G
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG 54
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 35 ASTMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVE 91
S + +CA C G I + ++ A+D WH +C+ C+ + + +G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 92 DYASLF 97
DY LF
Sbjct: 61 DYIRLF 66
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPIS 194
+C GCG I + + D WH C +C C+ +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG 43
>pdb|2COR|A Chain A, Solution Structure Of The Third Lim Domain Of Particularly
Interesting New Cys-His Protein
Length = 79
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
CQ C I + + N +HPDHF C +CG +L E +G +C C++
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHD 69
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
V ++WH F C CG L +++G +C CY F PK
Sbjct: 24 VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 70
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 157 CPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
CP+C G E I + WH++CFRC +C + + T + ++ C C K
Sbjct: 11 CPRC-GQAVYAAEKVIGA-GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
P+C Q + V K+WH FRC C + + G YC YA F
Sbjct: 12 PRCG--QAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 67
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
V ++WH F C CG L +++G +C CY F PK
Sbjct: 131 VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 157 CPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
CP+C G E I + WH++CFRC +C + + T + ++ C C K
Sbjct: 118 CPRC-GQAVYAAEKVIGA-GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 172
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
P+C Q + V K+WH FRC C + + G YC YA F
Sbjct: 119 PRCG--QAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 174
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFC 148
C C I VV A ++ HP+ FVC C L KG++ EG +C
Sbjct: 28 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC 75
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 34 AASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
++ P C C I +V+A DK HPE F C C + + + + G YC
Sbjct: 20 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC 75
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREE 217
P C CG I +K D+ H CF C C + + E ++ C E + R
Sbjct: 26 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC-ETHARARTS 84
Query: 218 G 218
G
Sbjct: 85 G 85
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 160 CFGCGKPITETAIKVHDR--KWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREE 217
C C K I K+ + WHE CF C RC++PI +F + CV C EK
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67
Query: 218 G 218
G
Sbjct: 68 G 68
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 101 CQGCRLPIKDVV--VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
CQ C+ I + +WH F+C C + K F ++ FC CYE
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 158 PKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSE 212
PKC GC K I + ++ WH+ CF C C++ I +F D CV C E
Sbjct: 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE 72
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 100 KCQGCRLPI--KDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
KC+GC I D V WH D F C +C + F+ + + +C C+E KF
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 40 PKCAACQGLI----QNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYAS 95
PKC C I QN+ + WH + F C++C+ I T F YCV + +
Sbjct: 16 PKCKGCFKAIVAGDQNVEYKGT--VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73
Query: 96 LFLN 99
F +
Sbjct: 74 KFAS 77
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 39 YPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYAS 95
+ +CA C G I + ++ A+D WH +C+ C+ + + +G C DY
Sbjct: 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120
Query: 96 LF 97
LF
Sbjct: 121 LF 122
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPI 193
+C GCG I + + D WH C +C C+ +
Sbjct: 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQL 98
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 172 IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSE 212
I +R+WH CF C +C + G F D++C +C +
Sbjct: 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 118 QTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
+ WH D F C C L+ +GF + C C
Sbjct: 29 RQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 41 KCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSP-YCVEDYASLFLN 99
KCA C I + I++A+ K +HP F C C + F V A S +C+ED+ F +
Sbjct: 17 KCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 159 KCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRV-CEADVVCVE 209
KC C +PI + ++ + +H CF C C R + G F V + + C+E
Sbjct: 17 KCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIE 68
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 98 LNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKL 134
L KC C PI D ++ A+ + +HP F C+ C L
Sbjct: 15 LEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGL 51
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 117 NQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
QTWH F+C C L + F +G +C CYE KF
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 59 KTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLN 99
+TWH F C+ C P+ ++ F G+ YCV Y + F +
Sbjct: 27 QTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 172 IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
++ + WHE CF C C +P+ +F + CV C E
Sbjct: 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 160 CFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADVVC 207
C C K I E ++V D+ +H CF+C C++ S G + + +D+VC
Sbjct: 13 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVC 63
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACY 152
V AL++ +H FVC +C +L + FY E A+C CY
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 54 VQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
V ALD+ +H F C+ CR + Q F+ YC
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYC 57
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 176 DRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREEG 218
DR +H CF C CR + G F E C C E G
Sbjct: 26 DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESG 68
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 160 CFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADVVC 207
C C K I E ++V D+ +H CF+C C++ S G + + +D+VC
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVC 61
>pdb|1X62|A Chain A, Solution Structure Of The Lim Domain Of Carboxyl Terminal
Lim Domain Protein 1
Length = 79
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 98 LNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFC 148
L C C I V V ++ HP+ +VC CGT L KG + E +C
Sbjct: 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYC 65
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRC 189
P C CG I +K+ DR H C+ C C
Sbjct: 16 PMCDKCGTGIVGVFVKLRDRHRHPECYVCTDC 47
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 159 KCFGCGKPITETA-IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
KC CG+ + ++ R +H CF C CR+ + T + +A+V C C K
Sbjct: 9 KCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64
>pdb|1X6A|A Chain A, Solution Structures Of The Second Lim Domain Of Human Lim-
Kinase 2 (limk2)
Length = 81
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 91 EDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTA 150
+DY F C GC L + + A +HP+ F C+SC + +G+A+
Sbjct: 8 KDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVII-------EDGDAYALV 60
Query: 151 CYEGKFCPKC 160
+ +C KC
Sbjct: 61 QHATLYCGKC 70
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 42 CAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKC 101
C C L+ + A + +HPE F C C++ I G Y + +A+L+ KC
Sbjct: 18 CHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIED-------GDAYALVQHATLYCGKC 70
Query: 102 Q 102
Sbjct: 71 H 71
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 152 YEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCE-ADVVCVE 209
Y GKF C GC +T + + K+H CF C C+ I G + + + A + C +
Sbjct: 10 YWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGK 69
Query: 210 C 210
C
Sbjct: 70 C 70
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 42 CAACQGLIQNI----IVQALDKTWHPEHFRCT--HCRIPIATQKFHVHAGSPYCVEDYAS 95
C CQ QNI ++A+D+ WH + C CR+ ++ + G C DY
Sbjct: 6 CGGCQ---QNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62
Query: 96 L 96
L
Sbjct: 63 L 63
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 98 LNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKG--FYEREGNAFCTACY 152
L C GC+ I D + A++Q WH D C CG +L G Y + G C Y
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 158 PKCFGCGKPITETA-IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
KC C K + I+ + R +H+ CF C CR+ + T E+++ C C
Sbjct: 2 AKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVC 55
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 86 SPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGN 145
S + AS +C+G P + +V + + +H FVC C + FYE EG
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIV-NSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR 60
Query: 146 AFCTACYEGKFCP 158
+C ++ F P
Sbjct: 61 KYCEHDFQMLFAP 73
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
AS +C+G P + +V + + +H FVC C + FYE EG +C ++
Sbjct: 6 ASATCERCKGGFAPAEKIV-NSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 64
Query: 154 GKFCP 158
F P
Sbjct: 65 MLFAP 69
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 53 IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
IV + + +H + F C C F+ G YC D+ LF
Sbjct: 23 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 113 VTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
V + WH F C CG L +++G +C CY F
Sbjct: 15 VMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 159 KCFGCGKPI-TETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
KC CGK + + + WH+ CFRC C + + + ++ C C K
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAK 56
>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|F Chain F, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|G Chain G, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|H Chain H, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
Length = 65
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 101 CQGCRLPIKDVV--VTALNQTWHPDH--FVCISCGTKLLYKGFYEREGNAFCTA 150
CQGC I V VT N +WH F+C C L+ + F EG FC+
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 58
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 38 MYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED-YAS 95
M KC C + V +L K WH +C C + H G P+C + YA+
Sbjct: 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67
Query: 96 LF 97
LF
Sbjct: 68 LF 69
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 139 FYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTF 198
+++ NA C C + +F P E + + +HE CF C +C RP F
Sbjct: 5 YFQGSANAVCQRC-QARFSP---------AERIVNSNGELYHEHCFVCAQCFRPFPEGLF 54
Query: 199 RVCEADVVC 207
E C
Sbjct: 55 YEFEGRKYC 63
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 53 IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
IV + + +H F C C P F+ G YC D+ LF
Sbjct: 27 IVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFC 148
AS +C+G P + +V + + +H FVC C + FYE EG +C
Sbjct: 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC 63
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 25 SEALDPPPNAASTMYPKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIATQKFHV 82
SE L +A++T C C+G IV + + +H + F C C F+
Sbjct: 1 SENLYFQGSASAT----CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 56
Query: 83 HAGSPYCVEDYASLF 97
G YC D+ LF
Sbjct: 57 FEGRKYCEHDFQMLF 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,866,593
Number of Sequences: 62578
Number of extensions: 329392
Number of successful extensions: 825
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 158
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)