Query psy11756
Match_columns 233
No_of_seqs 173 out of 1766
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:08:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.1E-29 3.7E-34 203.5 9.0 131 37-167 5-185 (192)
2 2xqn_T Testin, TESS; metal-bin 100.0 1.2E-28 4E-33 184.6 10.5 117 97-213 2-123 (126)
3 2xqn_T Testin, TESS; metal-bin 100.0 7.1E-29 2.4E-33 185.8 8.4 118 39-156 3-125 (126)
4 2xjy_A Rhombotin-2; oncoprotei 100.0 4.1E-29 1.4E-33 188.3 5.2 119 39-157 2-128 (131)
5 2xjy_A Rhombotin-2; oncoprotei 99.9 4.2E-28 1.4E-32 182.7 9.5 118 98-215 2-127 (131)
6 1rut_X Flinc4, fusion protein 99.9 7.5E-29 2.6E-33 198.0 5.4 128 38-165 4-139 (188)
7 2jtn_A LIM domain-binding prot 99.9 1.4E-27 4.9E-32 189.6 10.5 130 85-215 44-181 (182)
8 2rgt_A Fusion of LIM/homeobox 99.9 4.1E-27 1.4E-31 184.9 8.4 145 38-185 5-156 (169)
9 1rut_X Flinc4, fusion protein 99.9 7.2E-27 2.5E-31 186.5 7.9 123 96-218 3-133 (188)
10 2jtn_A LIM domain-binding prot 99.9 2.3E-26 7.8E-31 182.7 9.9 119 36-155 57-180 (182)
11 2rgt_A Fusion of LIM/homeobox 99.9 3.5E-26 1.2E-30 179.5 9.1 119 98-217 6-129 (169)
12 1b8t_A Protein (CRP1); LIM dom 99.9 4.5E-26 1.5E-30 182.5 9.0 119 98-216 7-175 (192)
13 2cup_A Skeletal muscle LIM-pro 99.9 1.3E-24 4.5E-29 156.3 9.3 95 96-190 3-101 (101)
14 2cup_A Skeletal muscle LIM-pro 99.9 9.3E-25 3.2E-29 157.1 8.1 95 37-131 3-101 (101)
15 1m3v_A FLIN4, fusion of the LI 99.9 1.2E-22 4.2E-27 151.0 3.4 113 96-221 3-120 (122)
16 1m3v_A FLIN4, fusion of the LI 99.8 1.9E-22 6.6E-27 149.9 2.6 108 37-157 3-115 (122)
17 2cuq_A Four and A half LIM dom 99.8 1E-19 3.6E-24 125.0 7.4 79 84-162 1-79 (80)
18 1j2o_A FLIN2, fusion of rhombo 99.8 7E-20 2.4E-24 134.4 6.2 106 98-221 3-112 (114)
19 1x3h_A Leupaxin; paxillin fami 99.8 9E-20 3.1E-24 125.4 6.3 79 84-162 1-79 (80)
20 1j2o_A FLIN2, fusion of rhombo 99.8 4.9E-20 1.7E-24 135.2 4.9 101 39-157 3-107 (114)
21 2ehe_A Four and A half LIM dom 99.8 7E-20 2.4E-24 126.5 5.2 79 84-162 1-81 (82)
22 2dlo_A Thyroid receptor-intera 99.8 2.8E-19 9.7E-24 123.2 6.5 78 84-162 2-80 (81)
23 2egq_A FHL1 protein; LIM domai 99.8 2.7E-19 9.1E-24 122.1 6.1 71 143-213 1-76 (77)
24 1x63_A Skeletal muscle LIM-pro 99.8 1.4E-18 4.7E-23 119.9 7.7 78 84-161 1-80 (82)
25 2cuq_A Four and A half LIM dom 99.8 5.9E-19 2E-23 121.2 4.7 73 143-215 1-73 (80)
26 1x3h_A Leupaxin; paxillin fami 99.7 1.1E-18 3.7E-23 119.9 5.1 73 143-215 1-73 (80)
27 2ehe_A Four and A half LIM dom 99.7 7.1E-19 2.4E-23 121.4 3.8 73 143-215 1-75 (82)
28 1x6a_A LIMK-2, LIM domain kina 99.7 3.9E-18 1.3E-22 117.4 6.0 79 84-162 1-81 (81)
29 1x63_A Skeletal muscle LIM-pro 99.7 4.3E-18 1.5E-22 117.4 6.2 74 143-216 1-76 (82)
30 2egq_A FHL1 protein; LIM domai 99.7 7.3E-18 2.5E-22 114.9 6.2 71 84-154 1-76 (77)
31 1v6g_A Actin binding LIM prote 99.7 1.4E-17 4.8E-22 114.6 6.3 75 144-218 2-77 (81)
32 2dlo_A Thyroid receptor-intera 99.7 6.6E-18 2.2E-22 116.3 4.5 71 143-214 2-73 (81)
33 1x6a_A LIMK-2, LIM domain kina 99.7 5.4E-18 1.8E-22 116.7 2.9 74 143-216 1-76 (81)
34 1iml_A CRIP, cysteine rich int 99.7 3.1E-17 1.1E-21 111.5 4.7 70 40-109 1-72 (76)
35 2dar_A PDZ and LIM domain prot 99.7 8.8E-17 3E-21 112.8 6.6 67 36-102 22-88 (90)
36 1x64_A Alpha-actinin-2 associa 99.7 1.8E-16 6.1E-21 111.0 7.0 66 37-102 23-88 (89)
37 2cur_A Skeletal muscle LIM-pro 99.6 8.1E-17 2.8E-21 107.4 4.2 67 37-103 3-69 (69)
38 1x68_A FHL5 protein; four-and- 99.6 1.4E-16 4.8E-21 108.2 5.3 67 39-105 5-75 (76)
39 1wig_A KIAA1808 protein; LIM d 99.6 2.3E-16 7.8E-21 106.4 6.0 67 154-220 2-69 (73)
40 1x68_A FHL5 protein; four-and- 99.6 2.6E-16 8.9E-21 106.9 5.9 70 95-164 2-75 (76)
41 2dj7_A Actin-binding LIM prote 99.6 2.8E-16 9.6E-21 107.8 5.5 66 37-103 13-79 (80)
42 1x62_A C-terminal LIM domain p 99.6 9.2E-17 3.2E-21 110.0 3.0 66 37-102 13-78 (79)
43 1iml_A CRIP, cysteine rich int 99.6 5E-16 1.7E-20 105.5 6.6 71 99-169 1-73 (76)
44 2d8z_A Four and A half LIM dom 99.6 1.9E-16 6.6E-21 105.8 4.4 66 38-103 4-69 (70)
45 2d8z_A Four and A half LIM dom 99.6 8E-16 2.7E-20 102.7 6.8 67 96-162 3-69 (70)
46 1x4l_A Skeletal muscle LIM-pro 99.6 3.3E-16 1.1E-20 105.2 4.7 65 37-101 3-71 (72)
47 1a7i_A QCRP2 (LIM1); LIM domai 99.6 1E-16 3.6E-21 110.2 2.2 71 38-108 6-77 (81)
48 2cur_A Skeletal muscle LIM-pro 99.6 6.1E-16 2.1E-20 103.0 5.7 67 96-162 3-69 (69)
49 1v6g_A Actin binding LIM prote 99.6 7E-16 2.4E-20 106.0 6.0 73 85-157 2-75 (81)
50 2dar_A PDZ and LIM domain prot 99.6 1.3E-15 4.3E-20 106.9 7.1 75 88-162 15-89 (90)
51 1wyh_A SLIM 2, skeletal muscle 99.6 1.2E-15 4.1E-20 102.4 6.4 68 95-162 2-71 (72)
52 2cu8_A Cysteine-rich protein 2 99.6 7.2E-16 2.5E-20 104.7 5.2 66 38-103 8-75 (76)
53 1x4k_A Skeletal muscle LIM-pro 99.6 1.8E-15 6.2E-20 101.5 6.5 68 95-162 2-71 (72)
54 1wyh_A SLIM 2, skeletal muscle 99.6 6.7E-16 2.3E-20 103.6 4.3 65 38-102 4-70 (72)
55 1nyp_A Pinch protein; LIM doma 99.6 4.8E-16 1.6E-20 102.7 3.2 63 38-100 4-66 (66)
56 2d8x_A Protein pinch; LIM doma 99.6 8.2E-16 2.8E-20 102.7 4.2 65 37-101 3-67 (70)
57 1x4k_A Skeletal muscle LIM-pro 99.6 1.2E-15 4.2E-20 102.4 4.5 64 39-102 5-70 (72)
58 2iyb_E Testin, TESS, TES; LIM 99.6 2.5E-15 8.4E-20 98.9 5.4 59 156-214 1-64 (65)
59 2cor_A Pinch protein; LIM doma 99.6 3.2E-15 1.1E-19 102.3 5.9 66 36-102 12-77 (79)
60 1nyp_A Pinch protein; LIM doma 99.6 2.4E-15 8.1E-20 99.3 4.8 64 96-159 3-66 (66)
61 2co8_A NEDD9 interacting prote 99.6 5.5E-15 1.9E-19 101.8 6.7 66 37-102 13-81 (82)
62 1g47_A Pinch protein; LIM doma 99.6 1.4E-15 4.7E-20 103.4 3.4 66 37-102 9-76 (77)
63 2cu8_A Cysteine-rich protein 2 99.6 5.1E-15 1.7E-19 100.4 6.1 68 95-162 6-75 (76)
64 2d8x_A Protein pinch; LIM doma 99.6 6E-15 2.1E-19 98.4 6.3 63 155-217 3-65 (70)
65 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.3E-15 7.9E-20 103.4 4.3 70 97-166 6-76 (81)
66 2d8y_A Eplin protein; LIM doma 99.5 5.2E-15 1.8E-19 103.9 5.8 67 38-104 14-81 (91)
67 1wig_A KIAA1808 protein; LIM d 99.5 5.6E-15 1.9E-19 99.5 5.4 61 39-99 5-66 (73)
68 1x4l_A Skeletal muscle LIM-pro 99.5 9.3E-15 3.2E-19 98.1 6.1 65 96-160 3-71 (72)
69 1x61_A Thyroid receptor intera 99.5 9.5E-15 3.3E-19 98.0 5.6 63 155-217 3-67 (72)
70 1g47_A Pinch protein; LIM doma 99.5 1.1E-14 3.6E-19 99.0 5.0 66 96-161 9-76 (77)
71 2l3k_A Rhombotin-2, linker, LI 99.5 1.4E-14 5E-19 107.3 5.8 79 93-171 1-84 (123)
72 2l4z_A DNA endonuclease RBBP8, 99.5 1.4E-14 4.8E-19 107.3 5.4 63 36-98 58-123 (123)
73 2dj7_A Actin-binding LIM prote 99.5 1.9E-14 6.6E-19 98.6 5.5 64 98-162 15-79 (80)
74 1x62_A C-terminal LIM domain p 99.5 1.3E-14 4.5E-19 99.2 4.6 64 98-161 15-78 (79)
75 3f6q_B LIM and senescent cell 99.5 2.3E-14 7.8E-19 95.9 5.2 62 153-214 7-70 (72)
76 1x61_A Thyroid receptor intera 99.5 1.1E-14 3.7E-19 97.7 3.6 64 38-102 4-69 (72)
77 1x64_A Alpha-actinin-2 associa 99.5 3.2E-14 1.1E-18 99.4 6.0 64 98-161 25-88 (89)
78 2cor_A Pinch protein; LIM doma 99.5 4.2E-14 1.4E-18 96.6 5.5 64 97-161 14-77 (79)
79 2d8y_A Eplin protein; LIM doma 99.5 9.4E-14 3.2E-18 97.4 6.3 67 97-163 14-81 (91)
80 3f6q_B LIM and senescent cell 99.4 1.3E-13 4.6E-18 92.1 5.5 64 94-157 7-72 (72)
81 2iyb_E Testin, TESS, TES; LIM 99.4 1.6E-13 5.6E-18 90.1 4.5 59 97-155 1-64 (65)
82 2l4z_A DNA endonuclease RBBP8, 99.4 1E-13 3.5E-18 102.7 3.8 61 154-214 58-121 (123)
83 2l3k_A Rhombotin-2, linker, LI 99.4 1.4E-13 4.7E-18 102.0 4.4 70 40-109 9-81 (123)
84 2co8_A NEDD9 interacting prote 99.3 1.5E-12 5.2E-17 89.5 4.8 63 98-160 15-80 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.7 9E-06 3.1E-10 44.7 1.5 28 39-66 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.4 3.5E-05 1.2E-09 42.3 0.4 28 157-184 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 92.2 0.08 2.7E-06 38.1 2.7 105 65-171 7-127 (133)
88 4ap4_A E3 ubiquitin ligase RNF 90.2 0.22 7.6E-06 35.7 3.4 90 39-137 7-126 (133)
89 3vk6_A E3 ubiquitin-protein li 79.9 2.2 7.4E-05 29.5 3.9 64 126-194 3-72 (101)
90 2eqg_A Tumor necrosis factor, 78.8 1 3.5E-05 25.9 1.7 21 198-218 22-42 (49)
91 1t1h_A Gspef-atpub14, armadill 78.3 2.5 8.5E-05 27.1 3.9 47 123-170 7-56 (78)
92 2ysl_A Tripartite motif-contai 77.7 1.7 5.7E-05 27.5 2.8 46 124-170 20-70 (73)
93 2e5r_A Dystrobrevin alpha; ZZ 77.0 3.6 0.00012 25.8 4.1 40 175-216 5-47 (63)
94 2djb_A Polycomb group ring fin 76.6 2.6 8.8E-05 26.6 3.5 45 125-170 16-63 (72)
95 1jjd_A Metallothionein, SMTA; 76.0 3 0.0001 25.5 3.3 33 185-217 9-42 (55)
96 1weu_A Inhibitor of growth fam 75.8 16 0.00053 24.7 8.1 46 38-95 35-85 (91)
97 1g25_A CDK-activating kinase a 75.2 3 0.0001 25.7 3.4 47 125-171 4-57 (65)
98 2ecy_A TNF receptor-associated 74.8 1.3 4.6E-05 27.5 1.7 45 125-170 16-63 (66)
99 1jm7_B BARD1, BRCA1-associated 73.4 3 0.0001 29.2 3.4 43 125-168 23-66 (117)
100 2ysm_A Myeloid/lymphoid or mix 72.8 5.6 0.00019 27.7 4.7 73 117-213 29-104 (111)
101 2ea6_A Ring finger protein 4; 70.8 2.3 7.8E-05 26.3 2.1 13 39-51 15-27 (69)
102 1jm7_B BARD1, BRCA1-associated 69.7 4.7 0.00016 28.2 3.8 43 66-108 23-65 (117)
103 4gne_A Histone-lysine N-methyl 69.4 13 0.00044 25.9 5.9 50 39-108 15-68 (107)
104 2cs3_A Protein C14ORF4, MY039 67.7 2.3 7.8E-05 28.0 1.5 50 37-91 13-63 (93)
105 2y43_A E3 ubiquitin-protein li 67.5 3.5 0.00012 27.8 2.6 44 125-169 23-69 (99)
106 1x4j_A Ring finger protein 38; 66.2 3.2 0.00011 26.4 2.1 29 38-66 22-53 (75)
107 2ecw_A Tripartite motif-contai 64.4 7.3 0.00025 24.9 3.7 46 124-170 19-72 (85)
108 2gvi_A Conserved hypothetical 63.5 2.3 7.9E-05 33.3 1.1 29 185-213 174-202 (204)
109 1e4u_A Transcriptional repress 63.3 3 0.0001 27.2 1.5 46 125-170 12-63 (78)
110 2ecv_A Tripartite motif-contai 62.8 5.1 0.00017 25.7 2.6 44 125-169 20-71 (85)
111 2xeu_A Ring finger protein 4; 62.8 2.6 8.9E-05 25.6 1.1 47 125-171 4-58 (64)
112 3l11_A E3 ubiquitin-protein li 62.5 6.5 0.00022 27.2 3.3 43 125-168 16-61 (115)
113 2ecm_A Ring finger and CHY zin 62.0 9.8 0.00034 22.1 3.7 26 143-168 27-54 (55)
114 1bor_A Transcription factor PM 61.2 6.6 0.00023 23.4 2.7 41 125-167 7-47 (56)
115 2csy_A Zinc finger protein 183 60.8 8 0.00027 24.8 3.3 43 125-168 16-60 (81)
116 2egp_A Tripartite motif-contai 60.6 6.4 0.00022 25.0 2.8 43 125-168 13-64 (79)
117 2djb_A Polycomb group ring fin 60.4 3.9 0.00013 25.8 1.6 10 99-108 51-60 (72)
118 1chc_A Equine herpes virus-1 r 60.0 10 0.00036 23.2 3.7 43 126-168 7-51 (68)
119 3ng2_A RNF4, snurf, ring finge 59.4 2.5 8.4E-05 26.4 0.5 13 39-51 10-22 (71)
120 2d8t_A Dactylidin, ring finger 59.3 7.6 0.00026 24.2 2.9 13 40-52 16-28 (71)
121 2ckl_A Polycomb group ring fin 59.1 7.1 0.00024 26.7 3.0 44 125-169 16-62 (108)
122 2kwj_A Zinc finger protein DPF 58.5 11 0.00039 26.3 4.0 78 117-215 30-110 (114)
123 3vk6_A E3 ubiquitin-protein li 57.8 4 0.00014 28.1 1.4 43 68-110 4-49 (101)
124 3lrq_A E3 ubiquitin-protein li 57.2 5 0.00017 27.2 1.9 44 125-169 23-70 (100)
125 2kre_A Ubiquitin conjugation f 56.8 12 0.00043 25.4 3.8 48 122-170 27-76 (100)
126 4ayc_A E3 ubiquitin-protein li 56.4 11 0.00037 27.1 3.7 44 125-169 54-99 (138)
127 2kr4_A Ubiquitin conjugation f 56.0 13 0.00043 24.4 3.7 48 122-170 12-61 (85)
128 2ecw_A Tripartite motif-contai 54.9 17 0.00057 23.1 4.1 11 99-109 60-70 (85)
129 1jm7_A BRCA1, breast cancer ty 54.3 7.4 0.00025 26.6 2.4 44 125-169 22-70 (112)
130 1wgm_A Ubiquitin conjugation f 54.1 12 0.00041 25.3 3.4 47 122-169 20-69 (98)
131 4ic3_A E3 ubiquitin-protein li 54.1 12 0.00041 23.7 3.2 43 125-170 25-68 (74)
132 1t1h_A Gspef-atpub14, armadill 54.0 9.1 0.00031 24.3 2.7 36 159-194 10-54 (78)
133 3hcs_A TNF receptor-associated 53.4 8.6 0.0003 28.6 2.8 44 125-169 19-65 (170)
134 1weo_A Cellulose synthase, cat 53.0 5.9 0.0002 26.6 1.6 16 204-219 43-58 (93)
135 1rmd_A RAG1; V(D)J recombinati 52.3 9.7 0.00033 26.3 2.8 45 125-170 24-71 (116)
136 2ecn_A Ring finger protein 141 51.4 6.4 0.00022 24.4 1.5 43 125-169 16-60 (70)
137 3ztg_A E3 ubiquitin-protein li 50.9 8.1 0.00028 25.4 2.1 43 124-167 13-60 (92)
138 2ckl_B Ubiquitin ligase protei 50.8 8.8 0.0003 28.5 2.5 43 125-168 55-101 (165)
139 2yur_A Retinoblastoma-binding 50.7 17 0.00057 22.9 3.5 10 99-108 53-62 (74)
140 2ect_A Ring finger protein 126 50.1 24 0.00082 22.1 4.3 13 39-51 15-27 (78)
141 3fl2_A E3 ubiquitin-protein li 49.7 10 0.00035 26.6 2.6 44 125-169 53-99 (124)
142 2jrp_A Putative cytoplasmic pr 49.7 23 0.00077 23.3 4.0 9 100-108 4-12 (81)
143 2dmj_A Poly (ADP-ribose) polym 48.6 5.3 0.00018 27.8 0.8 29 157-185 25-65 (106)
144 3hct_A TNF receptor-associated 48.2 9.2 0.00031 26.6 2.1 45 125-170 19-66 (118)
145 4hc9_A Trans-acting T-cell-spe 46.0 38 0.0013 23.7 5.0 78 67-152 7-87 (115)
146 2ct2_A Tripartite motif protei 44.9 16 0.00056 23.4 2.9 10 99-108 57-66 (88)
147 3l11_A E3 ubiquitin-protein li 44.7 9.8 0.00033 26.3 1.8 25 85-109 34-61 (115)
148 2l0b_A E3 ubiquitin-protein li 44.4 8.3 0.00028 25.5 1.3 13 39-51 40-52 (91)
149 2ecj_A Tripartite motif-contai 43.6 20 0.00068 20.9 2.9 30 125-155 16-45 (58)
150 2c2l_A CHIP, carboxy terminus 43.6 18 0.00061 28.8 3.4 50 121-171 205-257 (281)
151 2ecg_A Baculoviral IAP repeat- 43.5 20 0.0007 22.5 3.1 42 126-170 27-69 (75)
152 1v9x_A Poly (ADP-ribose) polym 43.4 5.5 0.00019 28.1 0.2 28 158-185 21-60 (114)
153 1z6u_A NP95-like ring finger p 43.4 15 0.00051 26.9 2.7 44 125-169 79-125 (150)
154 2gvi_A Conserved hypothetical 40.0 11 0.00039 29.3 1.6 30 125-154 173-202 (204)
155 2jne_A Hypothetical protein YF 39.7 7.9 0.00027 26.4 0.5 10 40-49 33-42 (101)
156 4ayc_A E3 ubiquitin-protein li 39.1 13 0.00045 26.6 1.8 37 159-195 55-99 (138)
157 2f42_A STIP1 homology and U-bo 38.1 27 0.00093 26.5 3.5 49 122-171 104-155 (179)
158 2ds5_A CLPX, ATP-dependent CLP 38.0 24 0.00083 20.9 2.5 32 184-215 12-44 (51)
159 2yu4_A E3 SUMO-protein ligase 37.5 20 0.00069 23.8 2.4 31 123-154 6-37 (94)
160 1iym_A EL5; ring-H2 finger, ub 37.0 48 0.0017 18.9 3.9 24 144-167 28-53 (55)
161 3odc_A Poly [ADP-ribose] polym 36.7 6.7 0.00023 27.5 -0.2 15 158-172 20-34 (111)
162 2ep4_A Ring finger protein 24; 36.2 38 0.0013 20.9 3.5 27 143-169 36-64 (74)
163 1ovx_A ATP-dependent CLP prote 35.4 28 0.00096 22.0 2.6 34 184-217 19-53 (67)
164 2ysj_A Tripartite motif-contai 35.2 20 0.00067 21.5 1.9 33 184-217 21-53 (63)
165 2kiz_A E3 ubiquitin-protein li 34.3 43 0.0015 20.3 3.5 26 143-168 35-62 (69)
166 1wev_A Riken cDNA 1110020M19; 33.5 31 0.0011 22.8 2.8 58 158-220 17-79 (88)
167 2ct0_A Non-SMC element 1 homol 32.0 19 0.00066 23.1 1.5 14 37-50 13-26 (74)
168 3nw0_A Non-structural maintena 31.4 17 0.00058 29.0 1.4 38 157-194 180-228 (238)
169 1wfl_A Zinc finger protein 216 30.9 69 0.0024 20.6 3.9 15 36-50 22-36 (74)
170 1z6u_A NP95-like ring finger p 30.4 18 0.00062 26.5 1.3 39 158-196 79-126 (150)
171 2das_A Zinc finger MYM-type pr 30.4 39 0.0013 20.8 2.5 27 185-211 22-52 (62)
172 2rsd_A E3 SUMO-protein ligase 28.9 78 0.0027 19.5 4.0 47 163-214 15-66 (68)
173 2c2l_A CHIP, carboxy terminus 28.5 34 0.0012 27.1 2.8 48 61-109 204-254 (281)
174 2e6s_A E3 ubiquitin-protein li 28.4 62 0.0021 20.8 3.5 44 159-211 28-75 (77)
175 3od8_A Poly [ADP-ribose] polym 28.1 11 0.00036 26.7 -0.3 28 158-185 39-78 (116)
176 2yho_A E3 ubiquitin-protein li 27.4 60 0.0021 20.7 3.3 42 126-170 20-62 (79)
177 1uw0_A DNA ligase III; DNA rep 27.3 9.1 0.00031 27.1 -0.8 15 159-173 17-31 (117)
178 2dip_A Zinc finger SWIM domain 27.2 48 0.0017 22.5 2.9 34 179-213 28-64 (98)
179 2dkt_A Ring finger and CHY zin 26.8 12 0.0004 27.6 -0.3 55 123-193 57-111 (143)
180 2lo3_A SAGA-associated factor 25.8 19 0.00065 20.5 0.5 16 36-51 14-29 (44)
181 3htk_C E3 SUMO-protein ligase 25.8 60 0.002 26.4 3.7 47 123-170 180-233 (267)
182 4ayb_P DNA-directed RNA polyme 25.8 26 0.0009 20.4 1.1 14 185-198 5-18 (48)
183 2d8v_A Zinc finger FYVE domain 25.7 14 0.00049 23.2 -0.0 15 83-97 25-39 (67)
184 2d8s_A Cellular modulator of i 25.5 73 0.0025 20.4 3.5 40 37-76 13-69 (80)
185 3j21_i 50S ribosomal protein L 24.9 51 0.0018 21.7 2.6 35 158-200 36-70 (83)
186 3knv_A TNF receptor-associated 24.0 36 0.0012 24.5 1.9 26 159-184 33-58 (141)
187 2k16_A Transcription initiatio 23.8 43 0.0015 21.1 2.0 49 159-216 20-71 (75)
188 1k81_A EIF-2-beta, probable tr 23.3 45 0.0015 18.1 1.8 26 159-186 2-27 (36)
189 2bay_A PRE-mRNA splicing facto 22.4 53 0.0018 19.8 2.2 33 184-217 4-37 (61)
190 2ea5_A Cell growth regulator w 22.0 69 0.0023 19.7 2.7 22 88-111 38-59 (68)
191 2cs2_A Poly [ADP-ribose] polym 22.0 17 0.00057 26.4 -0.3 28 158-185 28-69 (134)
192 3iz5_m 60S ribosomal protein L 21.9 62 0.0021 21.7 2.6 35 158-200 37-71 (92)
193 3na7_A HP0958; flagellar bioge 21.4 16 0.00056 29.3 -0.5 32 185-216 200-234 (256)
194 1wim_A KIAA0161 protein; ring 20.6 45 0.0015 21.8 1.7 42 125-166 6-61 (94)
195 2xb1_A Pygopus homolog 2, B-ce 20.1 81 0.0028 21.5 3.0 57 158-221 4-69 (105)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.96 E-value=1.1e-29 Score=203.51 Aligned_cols=131 Identities=27% Similarity=0.619 Sum_probs=120.5
Q ss_pred CCCCcccccccccc-ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCC---------------
Q psy11756 37 TMYPKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNK--------------- 100 (233)
Q Consensus 37 ~~~~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~--------------- 100 (233)
...++|.+|+++|. ++.|.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++++++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 34579999999997 57888999999999999999999999988999999999999999998776
Q ss_pred ---------------------------------CCCCCccccc-cEEecCCCeeecCCCCCCCCCcccccCceeccCCce
Q psy11756 101 ---------------------------------CQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNA 146 (233)
Q Consensus 101 ---------------------------------C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~ 146 (233)
|.+|+++|.+ ..|.+.++.||++||+|..|+++|.+..|+..+|++
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~ 164 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEI 164 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEE
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEE
Confidence 7789999974 577899999999999999999999877899999999
Q ss_pred echhhhhhccCCCCCCCCCCc
Q psy11756 147 FCTACYEGKFCPKCFGCGKPI 167 (233)
Q Consensus 147 ~C~~c~~~~~~~~C~~C~~~I 167 (233)
||..||.++++++|.+|++++
T Consensus 165 yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 165 YCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp EEHHHHHHHTCCCCCCCCCCC
T ss_pred eCHHHHHHhcCCcCCCCCCcc
Confidence 999999999999999999885
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=184.57 Aligned_cols=117 Identities=28% Similarity=0.618 Sum_probs=109.0
Q ss_pred cCCCCCCCCccccc-cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCcc--ccEEE
Q psy11756 97 FLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPIT--ETAIK 173 (233)
Q Consensus 97 ~~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~--~~~i~ 173 (233)
++++|.+|+++|.+ .++.++++.||++||+|..|+++|.+..|+..+|++||..||.++++++|.+|+++|. +..|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 56899999999985 5889999999999999999999999888999999999999999999999999999998 46799
Q ss_pred EcCceec--CCCCCcCCCCCCCCCCceEeeCCeeeChhhhhc
Q psy11756 174 VHDRKWH--EACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213 (233)
Q Consensus 174 ~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~ 213 (233)
++++.|| ++||+|..|+++|.++.|+..+|++||..++.+
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred CCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence 9999999 999999999999999999999999999966654
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=7.1e-29 Score=185.78 Aligned_cols=118 Identities=31% Similarity=0.640 Sum_probs=110.5
Q ss_pred CCccccccccccc-cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCcccc--ccEEec
Q psy11756 39 YPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIK--DVVVTA 115 (233)
Q Consensus 39 ~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~--~~~~~~ 115 (233)
.++|.+|+++|.+ +++.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++++++|.+|+++|. +..|.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a 82 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTY 82 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEE
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEEC
Confidence 4799999999985 7899999999999999999999999889999999999999999999999999999998 468999
Q ss_pred CCCeee--cCCCCCCCCCcccccCceeccCCceechhhhhhcc
Q psy11756 116 LNQTWH--PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156 (233)
Q Consensus 116 ~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~ 156 (233)
.++.|| +.||+|..|+++|.+..|+..+|++||..++.++|
T Consensus 83 ~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 83 NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 999999 99999999999999888999999999997777665
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.95 E-value=4.1e-29 Score=188.27 Aligned_cols=119 Identities=20% Similarity=0.500 Sum_probs=109.7
Q ss_pred CCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCCC--CceeeeCCccccccccccccCC--CCCCCCccccc--c
Q psy11756 39 YPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYASLFLN--KCQGCRLPIKD--V 111 (233)
Q Consensus 39 ~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~--~C~~C~~~i~~--~ 111 (233)
.++|.+|+++|.++ +|.++|+.||+.||+|..|+++|.. ..|+.++|++||+.||.+++++ +|.+|+++|.+ .
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 47899999999985 6899999999999999999999963 6899999999999999999998 99999999975 4
Q ss_pred EEecCCCeeecCCCCCCCCCcccc-cCceeccCCceechhhhhhccC
Q psy11756 112 VVTALNQTWHPDHFVCISCGTKLL-YKGFYEREGNAFCTACYEGKFC 157 (233)
Q Consensus 112 ~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~~C~~c~~~~~~ 157 (233)
++.+.++.||+.||+|..|+++|. +..|+..+|++||..||.++++
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 789999999999999999999994 6779999999999999988764
No 5
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.95 E-value=4.2e-28 Score=182.73 Aligned_cols=118 Identities=30% Similarity=0.676 Sum_probs=108.6
Q ss_pred CCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCcccc--cCceeccCCceechhhhhhccCC--CCCCCCCCccc--c
Q psy11756 98 LNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLL--YKGFYEREGNAFCTACYEGKFCP--KCFGCGKPITE--T 170 (233)
Q Consensus 98 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~~C~~c~~~~~~~--~C~~C~~~I~~--~ 170 (233)
.++|.+|+++|.+. ++.++++.||++||+|..|+.+|. +..|+..+|++||..||.+++++ +|.+|+++|.+ .
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 36899999999887 688999999999999999999996 46799999999999999999999 99999999975 5
Q ss_pred EEEEcCceecCCCCCcCCCCCCC-CCCceEeeCCeeeChhhhhccc
Q psy11756 171 AIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 171 ~i~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~~~~~C~~C~~~~~ 215 (233)
.|.+.++.||++||+|..|+++| .+..|+..+|++||..||.++.
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence 68899999999999999999999 5788999999999999998754
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.95 E-value=7.5e-29 Score=197.99 Aligned_cols=128 Identities=26% Similarity=0.597 Sum_probs=111.1
Q ss_pred CCCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCCC--CceeeeCCccccccccccccCC--CCCCCCccccc--
Q psy11756 38 MYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYASLFLN--KCQGCRLPIKD-- 110 (233)
Q Consensus 38 ~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~--~C~~C~~~i~~-- 110 (233)
..++|.+|+++|.++ +|.++++.||+.||+|..|+++|.. ..|+.++|++||+.||.+++++ +|.+|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 457999999999985 6899999999999999999999985 6899999999999999999998 79999999974
Q ss_pred cEEecCCCeeecCCCCCCCCCcccc-cCceeccCCceechhhhhhccCCCCCCCCC
Q psy11756 111 VVVTALNQTWHPDHFVCISCGTKLL-YKGFYEREGNAFCTACYEGKFCPKCFGCGK 165 (233)
Q Consensus 111 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~ 165 (233)
.++.+.++.||+.||+|..|+++|. +..|+..++++||..||.++++++|...+.
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 4788999999999999999999995 667999999999999999999999987765
No 7
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.95 E-value=1.4e-27 Score=189.61 Aligned_cols=130 Identities=25% Similarity=0.561 Sum_probs=112.2
Q ss_pred Cccccccccc---cccCCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCC
Q psy11756 85 GSPYCVEDYA---SLFLNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKC 160 (233)
Q Consensus 85 ~~~yC~~c~~---~~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C 160 (233)
++.||...+. ....++|.+|+++|.+. ++.+.++.||+.||+|..|+++|.+..| .++|++||..||.++++++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC 122 (182)
T 2jtn_A 44 DEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKC 122 (182)
T ss_dssp SSCSSSSSCCCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCC
T ss_pred cccccccccccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCcccccccccc
Confidence 4456666554 34468999999999887 6789999999999999999999987665 68999999999999999999
Q ss_pred CCCCCCcccc--EEEEcCceecCCCCCcCCCCCCCC-CCceEee-CCeeeChhhhhccc
Q psy11756 161 FGCGKPITET--AIKVHDRKWHEACFRCGRCRRPIS-GPTFRVC-EADVVCVECSEKGR 215 (233)
Q Consensus 161 ~~C~~~I~~~--~i~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~-~~~~~C~~C~~~~~ 215 (233)
.+|+++|.+. ++.+.++.||++||+|..|+++|. +..|+.. +|++||..||.+++
T Consensus 123 ~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 123 AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp TTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred ccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 9999999764 467999999999999999999996 5677654 89999999998764
No 8
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.94 E-value=4.1e-27 Score=184.86 Aligned_cols=145 Identities=29% Similarity=0.591 Sum_probs=116.2
Q ss_pred CCCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCcccccc--EEe
Q psy11756 38 MYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKDV--VVT 114 (233)
Q Consensus 38 ~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~~~--~~~ 114 (233)
..++|.+|+++|.+. +|.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++++++|.+|+++|.+. ++.
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 357999999999885 6889999999999999999999998764 899999999999999999999999999753 668
Q ss_pred cCCCeeecCCCCCCCCCcccc-cCcee-ccCCceechhhhhhccCCCCC--CCCCCccccEEEEcCceecCCCCC
Q psy11756 115 ALNQTWHPDHFVCISCGTKLL-YKGFY-EREGNAFCTACYEGKFCPKCF--GCGKPITETAIKVHDRKWHEACFR 185 (233)
Q Consensus 115 ~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~~C~~c~~~~~~~~C~--~C~~~I~~~~i~~~~~~~H~~Cf~ 185 (233)
+.+..||+.||+|..|+++|. +..|+ ..+|++||..||.+++...+. +..++.+ .+++....+|...|.
T Consensus 84 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rprt--~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGT--PMVAASPERHDGGLQ 156 (169)
T ss_dssp ETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC----------E--EEECCCCEECCSSCC
T ss_pred cCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCCC--cccHHHHHHHHHHHh
Confidence 999999999999999999997 55665 468999999999888765443 3333332 345555567766664
No 9
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.93 E-value=7.2e-27 Score=186.49 Aligned_cols=123 Identities=26% Similarity=0.610 Sum_probs=109.6
Q ss_pred ccCCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCccccc--CceeccCCceechhhhhhccCC--CCCCCCCCccc-
Q psy11756 96 LFLNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLY--KGFYEREGNAFCTACYEGKFCP--KCFGCGKPITE- 169 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~~C~~c~~~~~~~--~C~~C~~~I~~- 169 (233)
+..++|.+|+++|.+. ++.++++.||++||+|..|+.+|.. ..|+..+|++||..||.+++++ +|.+|+++|.+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 3467999999999887 6889999999999999999999974 6899999999999999999999 79999999975
Q ss_pred -cEEEEcCceecCCCCCcCCCCCCCC-CCceEeeCCeeeChhhhhccccCC
Q psy11756 170 -TAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADVVCVECSEKGREEG 218 (233)
Q Consensus 170 -~~i~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~C~~~~~~~~ 218 (233)
..|.+.++.||++||+|..|++.|. +..|+..++++||..||.++....
T Consensus 83 e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 83 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp SEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred cEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 4688999999999999999999994 678999999999999998765443
No 10
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.93 E-value=2.3e-26 Score=182.69 Aligned_cols=119 Identities=33% Similarity=0.732 Sum_probs=106.1
Q ss_pred CCCCCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCcccccc--E
Q psy11756 36 STMYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKDV--V 112 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~~~--~ 112 (233)
....++|.+|+++|.+. ++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+. +
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v 135 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVV 135 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCceE
Confidence 44568999999999985 6889999999999999999999998765 799999999999999999999999999753 5
Q ss_pred EecCCCeeecCCCCCCCCCcccc-cCcee-ccCCceechhhhhhc
Q psy11756 113 VTALNQTWHPDHFVCISCGTKLL-YKGFY-EREGNAFCTACYEGK 155 (233)
Q Consensus 113 ~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~~C~~c~~~~ 155 (233)
+.+.++.||+.||+|..|+++|. +..|+ ..+|++||..||.++
T Consensus 136 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 136 RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 67999999999999999999997 55665 468999999999765
No 11
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=3.5e-26 Score=179.51 Aligned_cols=119 Identities=28% Similarity=0.653 Sum_probs=105.9
Q ss_pred CCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCcccc--EEEE
Q psy11756 98 LNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITET--AIKV 174 (233)
Q Consensus 98 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~~~--~i~~ 174 (233)
.++|.+|+++|.+. ++.+.++.||+.||+|..|+.+|.+..| ..+|++||..||.++++++|.+|+++|.+. ++.+
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a 84 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 84 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEE
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCcEEEEc
Confidence 47899999999877 6789999999999999999999987664 789999999999999999999999999764 4679
Q ss_pred cCceecCCCCCcCCCCCCCC-CCceEee-CCeeeChhhhhccccC
Q psy11756 175 HDRKWHEACFRCGRCRRPIS-GPTFRVC-EADVVCVECSEKGREE 217 (233)
Q Consensus 175 ~~~~~H~~Cf~C~~C~~~l~-~~~~~~~-~~~~~C~~C~~~~~~~ 217 (233)
.++.||++||+|..|++.|. |..|+.. +|++||..||.++...
T Consensus 85 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 85 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp TTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred CCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 99999999999999999996 6677654 8999999999887653
No 12
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.93 E-value=4.5e-26 Score=182.46 Aligned_cols=119 Identities=24% Similarity=0.655 Sum_probs=108.3
Q ss_pred CCCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCC-----------------
Q psy11756 98 LNKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK----------------- 159 (233)
Q Consensus 98 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~----------------- 159 (233)
.++|.+|+++|. +..+.+.++.||+.||+|..|+.+|.+..|+..+|++||..||.++++++
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 368999999996 56788999999999999999999999888999999999999999998876
Q ss_pred -------------------------------CCCCCCCccc-cEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeC
Q psy11756 160 -------------------------------CFGCGKPITE-TAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVC 207 (233)
Q Consensus 160 -------------------------------C~~C~~~I~~-~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C 207 (233)
|.+|+++|.+ ..|.+.++.||++||+|..|+++|.++.|+..+|+|||
T Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC 166 (192)
T 1b8t_A 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYC 166 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEE
T ss_pred ccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeC
Confidence 7789999974 56889999999999999999999988899999999999
Q ss_pred hhhhhcccc
Q psy11756 208 VECSEKGRE 216 (233)
Q Consensus 208 ~~C~~~~~~ 216 (233)
+.||.++..
T Consensus 167 ~~cy~~~f~ 175 (192)
T 1b8t_A 167 KGCYAKNFG 175 (192)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999987643
No 13
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.91 E-value=1.3e-24 Score=156.32 Aligned_cols=95 Identities=28% Similarity=0.610 Sum_probs=88.5
Q ss_pred ccCCCCCCCCcccc--ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCcc--ccE
Q psy11756 96 LFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPIT--ETA 171 (233)
Q Consensus 96 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~--~~~ 171 (233)
.+.++|.+|+++|. +..+.+.++.||+.||+|..|+++|.+..|+..+|++||..||.++++++|.+|+++|. +..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 82 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN 82 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE
Confidence 45689999999996 56899999999999999999999998888999999999999999999999999999998 468
Q ss_pred EEEcCceecCCCCCcCCCC
Q psy11756 172 IKVHDRKWHEACFRCGRCR 190 (233)
Q Consensus 172 i~~~~~~~H~~Cf~C~~C~ 190 (233)
|+++++.||++||+|..|+
T Consensus 83 ~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 83 VEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp EESSSCEEETTTCCCTTCC
T ss_pred EEeCCcchHHhCCCCCCCC
Confidence 9999999999999999996
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.91 E-value=9.3e-25 Score=157.10 Aligned_cols=95 Identities=28% Similarity=0.518 Sum_probs=88.7
Q ss_pred CCCCcccccccccc--ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCcccc--ccE
Q psy11756 37 TMYPKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIK--DVV 112 (233)
Q Consensus 37 ~~~~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~--~~~ 112 (233)
...++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++++++|.+|+++|. +.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 82 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN 82 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE
Confidence 34579999999996 58899999999999999999999999888999999999999999999999999999997 468
Q ss_pred EecCCCeeecCCCCCCCCC
Q psy11756 113 VTALNQTWHPDHFVCISCG 131 (233)
Q Consensus 113 ~~~~~~~~H~~Cf~C~~C~ 131 (233)
|.+.++.||++||+|..|+
T Consensus 83 ~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 83 VEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp EESSSCEEETTTCCCTTCC
T ss_pred EEeCCcchHHhCCCCCCCC
Confidence 9999999999999999985
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=1.2e-22 Score=150.96 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=99.8
Q ss_pred ccCCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCcccc--cCceeccCCceechhhhhhccCC--CCCCCCCCcccc
Q psy11756 96 LFLNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLL--YKGFYEREGNAFCTACYEGKFCP--KCFGCGKPITET 170 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~~C~~c~~~~~~~--~C~~C~~~I~~~ 170 (233)
++.++|.+|+++|.+. ++.+.++.||+.||+|..|+.+|. +..|+..+|++||..||.++|++ +|++|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3568999999999887 588999999999999999999996 46799999999999999999999 999999999987
Q ss_pred EEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccccCCCCC
Q psy11756 171 AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREEGKND 221 (233)
Q Consensus 171 ~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~~~~~~ 221 (233)
.|++.++ ..|.|+.|+..+++|||..|+.++..++.++
T Consensus 83 ~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~~~~g~~ 120 (122)
T 1m3v_A 83 DVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFDAANGID 120 (122)
T ss_dssp ESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTTCCSCCC
T ss_pred heEEcCC-------------cCCCCCccEecCCEeEccCcchhchhhcCCC
Confidence 7776653 3678999999999999999999887665544
No 16
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=1.9e-22 Score=149.90 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=94.8
Q ss_pred CCCCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCC--CCceeeeCCccccccccccccCC--CCCCCCcccccc
Q psy11756 37 TMYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIA--TQKFHVHAGSPYCVEDYASLFLN--KCQGCRLPIKDV 111 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~~--~C~~C~~~i~~~ 111 (233)
...++|.+|+++|.+. +|.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3457999999999985 689999999999999999999997 35799999999999999999999 999999999887
Q ss_pred EEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccC
Q psy11756 112 VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFC 157 (233)
Q Consensus 112 ~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~ 157 (233)
.+++.++ ..|.+..|+.+++++||..|+.+++.
T Consensus 83 ~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 DVMVVGE-------------PTLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp ESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred heEEcCC-------------cCCCCCccEecCCEeEccCcchhchh
Confidence 6666553 35778899999999999999987764
No 17
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1e-19 Score=125.05 Aligned_cols=79 Identities=27% Similarity=0.536 Sum_probs=75.0
Q ss_pred CCccccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
+|++||+.||.++++++|.+|+++|.+..|.+.++.||++||+|..|+++|.+..|+..++++||..||.++++++|..
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 5789999999999999999999999888899999999999999999999998888999999999999999999999864
No 18
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=7e-20 Score=134.43 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=90.2
Q ss_pred CCCCCCCCcccccc-EEecCCCeeecCCCCCCCCCccccc--CceeccCCceechhhhhhccCCCCCCCCCCccccEEEE
Q psy11756 98 LNKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLY--KGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKV 174 (233)
Q Consensus 98 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~ 174 (233)
.++|.+|+++|.+. ++.+.++.||+.||+|..|+.+|.. ..|+..+|++||..||.++|+++|..|.. +.+|+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~~~~- 78 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GDVMV- 78 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CSCCC-
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---CceeE-
Confidence 46899999999887 8899999999999999999999974 57999999999999999999999998862 22221
Q ss_pred cCceecCCCCCcCCCCCC-CCCCceEeeCCeeeChhhhhccccCCCCC
Q psy11756 175 HDRKWHEACFRCGRCRRP-ISGPTFRVCEADVVCVECSEKGREEGKND 221 (233)
Q Consensus 175 ~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~~~~~C~~C~~~~~~~~~~~ 221 (233)
|+++ |.|+.|+..+++|||+.|+.+...++.++
T Consensus 79 --------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~g~~ 112 (114)
T 1j2o_A 79 --------------VGEPTLMGGEFGDEDERLITRLENTQFDAANGID 112 (114)
T ss_dssp --------------SSCSSTTSSBCCCSSSCCCEEEECTTCCCTTSSC
T ss_pred --------------cCCccCCCCeeEEcCCEeecchhhhccccccCCC
Confidence 3455 57889999999999999999887776654
No 19
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=9e-20 Score=125.37 Aligned_cols=79 Identities=29% Similarity=0.648 Sum_probs=75.0
Q ss_pred CCccccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
+|++||+.||.++++++|.+|+++|.+..|.+.++.||+.||+|..|+++|.+..|+..++++||..||.++++++|++
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 4789999999999999999999999999899999999999999999999998778999999999999999999999974
No 20
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.9e-20 Score=135.23 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=85.8
Q ss_pred CCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCCC--CceeeeCCccccccccccccCCCCCCCCccccccEEec
Q psy11756 39 YPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKDVVVTA 115 (233)
Q Consensus 39 ~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~ 115 (233)
.++|.+|+++|.+. +|.++++.||+.||+|+.|+++|.+ ..|+.++|++||+.||.++|+++|..|.. +.+|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~~~~- 78 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GDVMV- 78 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CSCCC-
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---CceeE-
Confidence 47999999999985 8999999999999999999999985 58999999999999999999999998862 22221
Q ss_pred CCCeeecCCCCCCCCCcc-cccCceeccCCceechhhhhhccC
Q psy11756 116 LNQTWHPDHFVCISCGTK-LLYKGFYEREGNAFCTACYEGKFC 157 (233)
Q Consensus 116 ~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~g~~~C~~c~~~~~~ 157 (233)
|+.+ +.+..|+..++++||..|+.++.+
T Consensus 79 --------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 79 --------------VGEPTLMGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp --------------SSCSSTTSSBCCCSSSCCCEEEECTTCCC
T ss_pred --------------cCCccCCCCeeEEcCCEeecchhhhcccc
Confidence 3344 567789999999999999877654
No 21
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7e-20 Score=126.51 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCccccccccccccCCCCCCCCcccc--ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
+|++||+.||.++++++|.+|+++|. +.++.+.++.||+.||+|..|+++|.+..|+..++++||..||.++++++|+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 57899999999999999999999998 5688899999999999999999999988899999999999999999999987
Q ss_pred C
Q psy11756 162 G 162 (233)
Q Consensus 162 ~ 162 (233)
+
T Consensus 81 ~ 81 (82)
T 2ehe_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=2.8e-19 Score=123.19 Aligned_cols=78 Identities=24% Similarity=0.460 Sum_probs=72.7
Q ss_pred CCccccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceecc-CCceechhhhhhccCCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYER-EGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~~C~~c~~~~~~~~C~~ 162 (233)
+|++||+.||. ++.++|.+|+++|.+..|.+.++.||+.||+|..|+++|.+..|+.. +|++||..||.++++++|++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 67899999999 78999999999999889999999999999999999999998888876 78999999999999999974
No 23
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=122.08 Aligned_cols=71 Identities=28% Similarity=0.780 Sum_probs=67.1
Q ss_pred CCceechhhhhhccCCCCCCCCCCccc-----cEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPITE-----TAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~~-----~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~ 213 (233)
++++||..||.++++++|++|+++|.+ ..|.+.++.||++||+|..|+++|.+..|+..+|+|||+.||.+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 468999999999999999999999997 77999999999999999999999998899999999999999975
No 24
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.4e-18 Score=119.94 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=73.2
Q ss_pred CCccccccccccccCCCCCCCCcccc--ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
++.+||+.||.++++++|.+|+++|. +.+|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++++++.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 36899999999999999999999997 5689999999999999999999999888899999999999999999999875
No 25
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=5.9e-19 Score=121.24 Aligned_cols=73 Identities=32% Similarity=0.806 Sum_probs=69.1
Q ss_pred CCceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 215 (233)
+|++||..||.++++++|++|+++|.++.|.+.++.||++||+|..|+++|.++.|+..+++|||+.||.++.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 5789999999999999999999999998999999999999999999999998889999999999999998754
No 26
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.1e-18 Score=119.94 Aligned_cols=73 Identities=27% Similarity=0.597 Sum_probs=68.8
Q ss_pred CCceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 215 (233)
+|++||..||.++++++|++|+++|.++.|.+.++.||++||+|..|+++|.++.|+..+++|||+.||.++.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999999998888999999999999997753
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-19 Score=121.42 Aligned_cols=73 Identities=27% Similarity=0.730 Sum_probs=68.0
Q ss_pred CCceechhhhhhccCCCCCCCCCCcc--ccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~--~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~ 215 (233)
+|++||..||.++++++|++|+++|. +..|.+.++.||++||+|..|+++|.++.|+..+|+|||+.||.++.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 57899999999999999999999998 56788899999999999999999999899999999999999997754
No 28
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.9e-18 Score=117.42 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=72.1
Q ss_pred CCccccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccc-cCcee-ccCCceechhhhhhccCCCCC
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLL-YKGFY-EREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~~C~~c~~~~~~~~C~ 161 (233)
.+.+||+.||.++++++|.+|+++|.+..|.+.++.||++||+|..|+++|. +..|+ ..++++||..||.+++++.|.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 3679999999999999999999999988999999999999999999999996 56777 589999999999999998875
Q ss_pred C
Q psy11756 162 G 162 (233)
Q Consensus 162 ~ 162 (233)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.3e-18 Score=117.42 Aligned_cols=74 Identities=28% Similarity=0.641 Sum_probs=68.2
Q ss_pred CCceechhhhhhccCCCCCCCCCCcc--ccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhcccc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGRE 216 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~--~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~ 216 (233)
++.+||..||.++++++|.+|+++|. +..|.+.++.||++||+|..|+++|.++.|+..++.+||+.||.++..
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhC
Confidence 46899999999999999999999998 567999999999999999999999988899999999999999987543
No 30
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.3e-18 Score=114.89 Aligned_cols=71 Identities=30% Similarity=0.622 Sum_probs=66.6
Q ss_pred CCccccccccccccCCCCCCCCccccc-----cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhh
Q psy11756 84 AGSPYCVEDYASLFLNKCQGCRLPIKD-----VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEG 154 (233)
Q Consensus 84 ~~~~yC~~c~~~~~~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~ 154 (233)
++++||+.||.++++++|.+|+++|.+ ..+.+.++.||+.||+|..|+++|.+..|+..+|++||..||.+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 468999999999999999999999986 68999999999999999999999998889999999999999865
No 31
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.4e-17 Score=114.60 Aligned_cols=75 Identities=21% Similarity=0.533 Sum_probs=66.3
Q ss_pred CceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCC-eeeChhhhhccccCC
Q psy11756 144 GNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEA-DVVCVECSEKGREEG 218 (233)
Q Consensus 144 g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~C~~~~~~~~ 218 (233)
+.+||..||.++++++|++|+++|.++.|.+.++.||++||+|..|+++|..+.++..++ .+||+.|+++.....
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCC
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCC
Confidence 468999999999999999999999998999999999999999999999997666666655 579999998766654
No 32
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=6.6e-18 Score=116.29 Aligned_cols=71 Identities=25% Similarity=0.636 Sum_probs=66.2
Q ss_pred CCceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEee-CCeeeChhhhhcc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVC-EADVVCVECSEKG 214 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~C~~~~ 214 (233)
+|++||..||. +++++|++|+++|.+..|.+.++.||++||+|..|+++|.+..|+.. +|+|||+.||.++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 68999999998 79999999999999989999999999999999999999998888876 7899999999765
No 33
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=5.4e-18 Score=116.71 Aligned_cols=74 Identities=26% Similarity=0.534 Sum_probs=66.8
Q ss_pred CCceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCC-CCceEe-eCCeeeChhhhhcccc
Q psy11756 143 EGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRV-CEADVVCVECSEKGRE 216 (233)
Q Consensus 143 ~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~~~~~C~~C~~~~~~ 216 (233)
++.+||..||.++++++|++|+++|.+..|.+.++.||++||+|..|+++|. +..|+. .+++|||+.||.+...
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 3689999999999999999999999988899999999999999999999995 577774 7999999999987543
No 34
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.1e-17 Score=111.47 Aligned_cols=70 Identities=29% Similarity=0.594 Sum_probs=65.3
Q ss_pred Ccccccccccc-ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccc-cccccccCCCCCCCCcccc
Q psy11756 40 PKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCV-EDYASLFLNKCQGCRLPIK 109 (233)
Q Consensus 40 ~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~C~~C~~~i~ 109 (233)
|+|.+|+++|. ++.|.++|+.||+.||+|..|+++|.+..|+.++|++||. .||.++++++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 58999999998 6889999999999999999999999988899999999999 6999999999999997663
No 35
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=8.8e-17 Score=112.85 Aligned_cols=67 Identities=34% Similarity=0.727 Sum_probs=62.6
Q ss_pred CCCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 36 STMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
....++|.+|++.|.+++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|.
T Consensus 22 ~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 3456899999999999999999999999999999999999988899999999999999999999986
No 36
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.8e-16 Score=111.04 Aligned_cols=66 Identities=26% Similarity=0.519 Sum_probs=61.5
Q ss_pred CCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 37 TMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
...++|.+|++.|.+++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|++++.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 445799999999999999999999999999999999999988899999999999999999998875
No 37
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=8.1e-17 Score=107.35 Aligned_cols=67 Identities=25% Similarity=0.565 Sum_probs=62.4
Q ss_pred CCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCC
Q psy11756 37 TMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQG 103 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~ 103 (233)
...++|.+|+++|.++.|.++++.||+.||+|..|+++|.+..|+.+++++||..||.++++++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 3457999999999998899999999999999999999999889999999999999999999999964
No 38
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.4e-16 Score=108.23 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=63.3
Q ss_pred CCccccccccccc----cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCC
Q psy11756 39 YPKCAACQGLIQN----IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCR 105 (233)
Q Consensus 39 ~~~C~~C~~~I~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~ 105 (233)
.++|.+|+++|.+ ++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 4799999999996 889999999999999999999999988999999999999999999999998875
No 39
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.3e-16 Score=106.38 Aligned_cols=67 Identities=21% Similarity=0.473 Sum_probs=61.0
Q ss_pred hccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCC-CCceEeeCCeeeChhhhhccccCCCC
Q psy11756 154 GKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADVVCVECSEKGREEGKN 220 (233)
Q Consensus 154 ~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~C~~~~~~~~~~ 220 (233)
.+++++|++|+++|.+..|.+.++.||++||+|..|+++|. +..|+..++++||..||.+...+.+.
T Consensus 2 s~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~~ 69 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDSG 69 (73)
T ss_dssp CCSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSCC
T ss_pred CcCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccccc
Confidence 35789999999999999999999999999999999999997 88999999999999999988776543
No 40
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.6e-16 Score=106.91 Aligned_cols=70 Identities=26% Similarity=0.507 Sum_probs=65.2
Q ss_pred cccCCCCCCCCccccc----cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCC
Q psy11756 95 SLFLNKCQGCRLPIKD----VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCG 164 (233)
Q Consensus 95 ~~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~ 164 (233)
++++++|.+|+++|.+ ..+.+.++.||++||+|..|+++|.+..|+..++++||..||.++++++|+.+.
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 3568899999999987 689999999999999999999999988899999999999999999999999875
No 41
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.8e-16 Score=107.84 Aligned_cols=66 Identities=30% Similarity=0.668 Sum_probs=60.2
Q ss_pred CCCCcccccccccc-ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCC
Q psy11756 37 TMYPKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQG 103 (233)
Q Consensus 37 ~~~~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~ 103 (233)
...++|.+|+++|. +++|.++++.||+.||+|..|+++|.+ .|+.+++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 34579999999997 588999999999999999999999986 6899999999999999999999863
No 42
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=9.2e-17 Score=109.98 Aligned_cols=66 Identities=21% Similarity=0.444 Sum_probs=60.9
Q ss_pred CCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 37 TMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
...++|.+|++.|.+++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+++++++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 345799999999999999999999999999999999999877899999999999999999988764
No 43
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=5e-16 Score=105.46 Aligned_cols=71 Identities=35% Similarity=0.757 Sum_probs=65.1
Q ss_pred CCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceech-hhhhhccCCCCCCCCCCccc
Q psy11756 99 NKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT-ACYEGKFCPKCFGCGKPITE 169 (233)
Q Consensus 99 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~-~c~~~~~~~~C~~C~~~I~~ 169 (233)
++|.+|+++|. +..+.+.++.||+.||+|..|+++|.+..|+..+|.+||. .||.++++++|.+|+.++..
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~~ 73 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAESH 73 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCceee
Confidence 57999999997 6788999999999999999999999987899999999999 69999999999999977643
No 44
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.9e-16 Score=105.76 Aligned_cols=66 Identities=26% Similarity=0.560 Sum_probs=61.6
Q ss_pred CCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCC
Q psy11756 38 MYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQG 103 (233)
Q Consensus 38 ~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~ 103 (233)
..++|.+|+++|.++.|.++++.||+.||+|..|+++|.+..|+.+++++||..||.++++++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 457999999999998899999999999999999999999889999999999999999999999863
No 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=8e-16 Score=102.73 Aligned_cols=67 Identities=28% Similarity=0.566 Sum_probs=62.6
Q ss_pred ccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 96 LFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
.+.++|.+|+++|.++.+.+.++.||++||+|..|+++|.+..|+..++++||..||.++++++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 4578999999999988899999999999999999999999888999999999999999999999974
No 46
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.3e-16 Score=105.25 Aligned_cols=65 Identities=17% Similarity=0.436 Sum_probs=59.8
Q ss_pred CCCCccccccccccc----cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCC
Q psy11756 37 TMYPKCAACQGLIQN----IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKC 101 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C 101 (233)
...++|.+|+++|.+ ++|.++++.||++||+|..|+++|.+..|+.+++++||..||.+++++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 345799999999986 78999999999999999999999998899999999999999999998875
No 47
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.61 E-value=1e-16 Score=110.21 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=56.4
Q ss_pred CCCcccccccccc-ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCccc
Q psy11756 38 MYPKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPI 108 (233)
Q Consensus 38 ~~~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i 108 (233)
..++|.+|+++|. ++.|.++++.||+.||+|..|+++|....|+.+++++||+.||.++++++|.+|++..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 3579999999996 5889999999999999999999999988899999999999999999999999998753
No 48
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.1e-16 Score=103.04 Aligned_cols=67 Identities=30% Similarity=0.598 Sum_probs=62.7
Q ss_pred ccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 96 LFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
.+.++|.+|+++|.++.+.+.++.||++||+|..|+++|.+..|+..++++||..||.++++++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 4568999999999988899999999999999999999999888999999999999999999999975
No 49
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7e-16 Score=106.03 Aligned_cols=73 Identities=30% Similarity=0.507 Sum_probs=63.8
Q ss_pred CccccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCC-ceechhhhhhccC
Q psy11756 85 GSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREG-NAFCTACYEGKFC 157 (233)
Q Consensus 85 ~~~yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~~C~~c~~~~~~ 157 (233)
..+||+.||.++++++|.+|+++|.+..|.+.++.||++||+|..|+++|....++..++ .+||..|+.+++.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 468999999999999999999999988999999999999999999999997555555555 5799999976653
No 50
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.3e-15 Score=106.87 Aligned_cols=75 Identities=29% Similarity=0.630 Sum_probs=67.7
Q ss_pred ccccccccccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 88 YCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 88 yC~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
.....+...+.++|.+|+++|.++.|.+.++.||++||+|..|+++|.+..|+..++++||..||.++|+++|+.
T Consensus 15 ~~~~~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 15 RAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCEEECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred hcccCCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 344446677789999999999988999999999999999999999999888999999999999999999999974
No 51
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.2e-15 Score=102.41 Aligned_cols=68 Identities=28% Similarity=0.574 Sum_probs=62.8
Q ss_pred cccCCCCCCCCcccc--ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 95 SLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 95 ~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
+++.++|.+|+++|. +.++.+.++.||++||+|..|+++|.+..|+..+|.+||..||.++++++|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 456789999999997 56899999999999999999999999888999999999999999999999974
No 52
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7.2e-16 Score=104.66 Aligned_cols=66 Identities=29% Similarity=0.611 Sum_probs=61.0
Q ss_pred CCCcccccccccc-ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccc-cccccccCCCCCC
Q psy11756 38 MYPKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCV-EDYASLFLNKCQG 103 (233)
Q Consensus 38 ~~~~C~~C~~~I~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~C~~ 103 (233)
..++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||. .||.++|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4579999999998 5889999999999999999999999988899999999999 7999999999864
No 53
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.8e-15 Score=101.50 Aligned_cols=68 Identities=25% Similarity=0.548 Sum_probs=62.4
Q ss_pred cccCCCCCCCCccccc--cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 95 SLFLNKCQGCRLPIKD--VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 95 ~~~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
++++++|.+|+++|.+ .++.+.++.||++||+|..|+++|.+..|+..+|++||..||.++++++|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 3568899999999974 5899999999999999999999999888999999999999999999999974
No 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6.7e-16 Score=103.64 Aligned_cols=65 Identities=26% Similarity=0.586 Sum_probs=60.6
Q ss_pred CCCcccccccccc--ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 38 MYPKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 38 ~~~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
..++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++++++|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 3479999999998 5789999999999999999999999988899999999999999999999986
No 55
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.59 E-value=4.8e-16 Score=102.65 Aligned_cols=63 Identities=35% Similarity=0.759 Sum_probs=58.6
Q ss_pred CCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCC
Q psy11756 38 MYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNK 100 (233)
Q Consensus 38 ~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~ 100 (233)
..++|.+|+++|.+++|.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 357999999999999999999999999999999999999889999999999999999988763
No 56
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=8.2e-16 Score=102.70 Aligned_cols=65 Identities=26% Similarity=0.523 Sum_probs=59.8
Q ss_pred CCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCC
Q psy11756 37 TMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKC 101 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C 101 (233)
...++|.+|++.|.+++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++.+..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp CCSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 34579999999999999999999999999999999999998889999999999999999887654
No 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.2e-15 Score=102.36 Aligned_cols=64 Identities=23% Similarity=0.526 Sum_probs=60.1
Q ss_pred CCccccccccccc--cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 39 YPKCAACQGLIQN--IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 39 ~~~C~~C~~~I~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
.++|.+|++.|.+ .+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++++++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 4799999999985 689999999999999999999999988999999999999999999999986
No 58
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=98.95 Aligned_cols=59 Identities=31% Similarity=0.738 Sum_probs=54.5
Q ss_pred cCCCCCCCCCCcc--ccEEEEcCceec--CCCCCcCCCCCCCCCCceEeeCCeeeC-hhhhhcc
Q psy11756 156 FCPKCFGCGKPIT--ETAIKVHDRKWH--EACFRCGRCRRPISGPTFRVCEADVVC-VECSEKG 214 (233)
Q Consensus 156 ~~~~C~~C~~~I~--~~~i~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~C~~~~ 214 (233)
|+++|++|+++|. +..|.+.|+.|| ++||+|..|+++|.+..|+..+|+||| ..|+.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4679999999998 678999999999 999999999999999999999999999 9999875
No 59
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.2e-15 Score=102.26 Aligned_cols=66 Identities=18% Similarity=0.437 Sum_probs=59.3
Q ss_pred CCCCCccccccccccccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 36 STMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
....++|.+|++.|.+++|.++++.||+.||+|..|+++|.+.. +.+++++||..||.++|++.+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 44468999999999998999999999999999999999999775 5999999999999999987653
No 60
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.56 E-value=2.4e-15 Score=99.27 Aligned_cols=64 Identities=38% Similarity=0.802 Sum_probs=59.8
Q ss_pred ccCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCC
Q psy11756 96 LFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~ 159 (233)
++.++|.+|+++|.+..+.+.++.||++||+|..|+++|.+..|+..+|.+||..||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4678999999999988999999999999999999999999888999999999999999999875
No 61
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=5.5e-15 Score=101.82 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=57.7
Q ss_pred CCCCccccccccccc-cEeeecCCCcCcCCCccCCCCCCCCCCcee--eeCCccccccccccccCCCCC
Q psy11756 37 TMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFH--VHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~yC~~c~~~~~~~~C~ 102 (233)
...++|.+|++.|.. +.|.++++.||+.||+|..|+++|....|+ .+++++||+.||.+++...+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 345799999999965 788899999999999999999999988887 479999999999998876543
No 62
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.4e-15 Score=103.44 Aligned_cols=66 Identities=24% Similarity=0.500 Sum_probs=58.9
Q ss_pred CCCCcccccccccc--ccEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 37 TMYPKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 37 ~~~~~C~~C~~~I~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
...++|.+|++.|. +.++.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++++++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 34579999999996 3678899999999999999999999988899999999999999999999885
No 63
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=5.1e-15 Score=100.44 Aligned_cols=68 Identities=28% Similarity=0.571 Sum_probs=62.2
Q ss_pred cccCCCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceech-hhhhhccCCCCCC
Q psy11756 95 SLFLNKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT-ACYEGKFCPKCFG 162 (233)
Q Consensus 95 ~~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~-~c~~~~~~~~C~~ 162 (233)
..+.++|.+|+++|. +..+.+.++.||++||+|..|+++|.+..|+..++++||. .||.++++++|.+
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 345789999999997 6688999999999999999999999988899999999999 7999999999974
No 64
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=6e-15 Score=98.44 Aligned_cols=63 Identities=25% Similarity=0.651 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccccC
Q psy11756 155 KFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREE 217 (233)
Q Consensus 155 ~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~~ 217 (233)
.+.++|.+|+++|.+..|.+.++.||++||+|..|+++|.+..|+..+|++||+.||.+....
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 346799999999999899999999999999999999999888899999999999999876543
No 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.55 E-value=2.3e-15 Score=103.43 Aligned_cols=70 Identities=26% Similarity=0.570 Sum_probs=55.8
Q ss_pred cCCCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCC
Q psy11756 97 FLNKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKP 166 (233)
Q Consensus 97 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~ 166 (233)
..++|.+|+++|. +..+.+.++.||++||+|..|+++|.+..|+..++++||..||.++++++|.+|+..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g 76 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQG 76 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCc
Confidence 3578999999995 668899999999999999999999988889999999999999999999999999865
No 66
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=5.2e-15 Score=103.94 Aligned_cols=67 Identities=22% Similarity=0.438 Sum_probs=61.6
Q ss_pred CCCccccccccccc-cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCC
Q psy11756 38 MYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGC 104 (233)
Q Consensus 38 ~~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C 104 (233)
..++|.+|++.|.+ +.|.++++.||+.||+|..|+++|....|+.+++++||+.||.++++++|.-+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCcc
Confidence 45799999999986 78899999999999999999999998889999999999999999999999733
No 67
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.6e-15 Score=99.50 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=56.5
Q ss_pred CCccccccccccccEeeecCCCcCcCCCccCCCCCCCC-CCceeeeCCccccccccccccCC
Q psy11756 39 YPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIA-TQKFHVHAGSPYCVEDYASLFLN 99 (233)
Q Consensus 39 ~~~C~~C~~~I~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~~~ 99 (233)
.+.|.+|+++|.+++|.++++.||++||+|..|+++|. +..|+.+++++||..||.+++..
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 47999999999999999999999999999999999998 67899999999999999887654
No 68
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=9.3e-15 Score=98.05 Aligned_cols=65 Identities=26% Similarity=0.608 Sum_probs=59.9
Q ss_pred ccCCCCCCCCccccc----cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCC
Q psy11756 96 LFLNKCQGCRLPIKD----VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKC 160 (233)
Q Consensus 96 ~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C 160 (233)
.+.++|.+|+++|.+ .++.+.++.||++||+|..|+++|.+..|+..+|++||..||.+++++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 356899999999986 68899999999999999999999998889999999999999999999875
No 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.5e-15 Score=97.97 Aligned_cols=63 Identities=29% Similarity=0.638 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCccc--cEEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccccC
Q psy11756 155 KFCPKCFGCGKPITE--TAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREE 217 (233)
Q Consensus 155 ~~~~~C~~C~~~I~~--~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~~ 217 (233)
+++++|.+|+++|.+ ..|.+.++.||++||+|..|+++|.+..|+..++.|||+.||.++...
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 467899999999975 579999999999999999999999888899999999999999887654
No 70
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.1e-14 Score=99.01 Aligned_cols=66 Identities=26% Similarity=0.548 Sum_probs=58.9
Q ss_pred ccCCCCCCCCcccc--ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 96 LFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 96 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
.+.++|.+|+++|. +.++.+.++.||+.||+|..|+++|.+..|+..+|.+||..||.++++++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 45689999999995 4578899999999999999999999877899999999999999999999986
No 71
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.51 E-value=1.4e-14 Score=107.32 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=70.0
Q ss_pred cccccCC--CCCCCCcccc--ccEEecCCCeeecCCCCCCCCCccc-ccCceeccCCceechhhhhhccCCCCCCCCCCc
Q psy11756 93 YASLFLN--KCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKL-LYKGFYEREGNAFCTACYEGKFCPKCFGCGKPI 167 (233)
Q Consensus 93 ~~~~~~~--~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I 167 (233)
|.++|+. +|.+|+++|. +.++.+.++.||+.||+|..|+++| .+..|+..++++||..||.++++++|..+..++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 5677887 9999999997 4578899999999999999999999 466799999999999999999999999998887
Q ss_pred cccE
Q psy11756 168 TETA 171 (233)
Q Consensus 168 ~~~~ 171 (233)
.+..
T Consensus 81 ~~~~ 84 (123)
T 2l3k_A 81 SGGD 84 (123)
T ss_dssp CCSC
T ss_pred ccCC
Confidence 6543
No 72
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=107.34 Aligned_cols=63 Identities=27% Similarity=0.673 Sum_probs=56.2
Q ss_pred CCCCCcccccccccccc-EeeecCCCcCcCCCccCCCCCCCC--CCceeeeCCccccccccccccC
Q psy11756 36 STMYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIA--TQKFHVHAGSPYCVEDYASLFL 98 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~ 98 (233)
....++|.+|+++|.+. +|.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 34467999999999985 699999999999999999999997 3689999999999999998764
No 73
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.9e-14 Score=98.59 Aligned_cols=64 Identities=27% Similarity=0.642 Sum_probs=58.8
Q ss_pred CCCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCC
Q psy11756 98 LNKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFG 162 (233)
Q Consensus 98 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~ 162 (233)
.++|.+|+++|. +..+.++++.||++||+|..|+++|.+ .|+..++++||..||.++|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 468999999996 568889999999999999999999985 6899999999999999999999974
No 74
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.3e-14 Score=99.16 Aligned_cols=64 Identities=28% Similarity=0.561 Sum_probs=60.0
Q ss_pred CCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 98 LNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 98 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
.++|.+|+++|.+.+|.+.++.||++||+|..|+++|.+..|+..++++||..||.+++++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5799999999998899999999999999999999999877899999999999999999999865
No 75
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.49 E-value=2.3e-14 Score=95.91 Aligned_cols=62 Identities=19% Similarity=0.423 Sum_probs=55.2
Q ss_pred hhccCCCCCCCCCCcccc--EEEEcCceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhcc
Q psy11756 153 EGKFCPKCFGCGKPITET--AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKG 214 (233)
Q Consensus 153 ~~~~~~~C~~C~~~I~~~--~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~ 214 (233)
...++++|++|+++|.+. .|.+.++.||++||+|..|+++|.++.|+..+|++||+.||.++
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHH
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHh
Confidence 456788999999999854 57799999999999999999999877899999999999999764
No 76
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.1e-14 Score=97.68 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=57.0
Q ss_pred CCCccccccccccc--cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCC
Q psy11756 38 MYPKCAACQGLIQN--IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQ 102 (233)
Q Consensus 38 ~~~~C~~C~~~I~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~ 102 (233)
..++|.+|+++|.+ .+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+++. .|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~ 69 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGP 69 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCS
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCC
Confidence 35799999999985 58999999999999999999999988889999999999999998763 443
No 77
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=3.2e-14 Score=99.45 Aligned_cols=64 Identities=28% Similarity=0.574 Sum_probs=60.1
Q ss_pred CCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 98 LNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 98 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
.++|.+|+++|.+..+.+.++.||++||+|..|+++|.+..|+..++.+||..||.++|++++.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5789999999998889999999999999999999999877899999999999999999999875
No 78
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4.2e-14 Score=96.64 Aligned_cols=64 Identities=28% Similarity=0.533 Sum_probs=58.2
Q ss_pred cCCCCCCCCccccccEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCC
Q psy11756 97 FLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCF 161 (233)
Q Consensus 97 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~ 161 (233)
+.++|.+|+++|.+..|.+.++.||++||+|..|+++|.+.. +..+|++||..||.+++++++.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 467999999999988899999999999999999999998764 5889999999999999998754
No 79
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=9.4e-14 Score=97.44 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=61.2
Q ss_pred cCCCCCCCCccccc-cEEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCC
Q psy11756 97 FLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGC 163 (233)
Q Consensus 97 ~~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C 163 (233)
..++|.+|+++|.+ ..+.+.++.||+.||+|..|+++|....|+..++.+||..||.++++++|.-+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCcc
Confidence 46799999999975 57899999999999999999999987779999999999999999999999844
No 80
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.43 E-value=1.3e-13 Score=92.10 Aligned_cols=64 Identities=23% Similarity=0.501 Sum_probs=56.9
Q ss_pred ccccCCCCCCCCcccccc--EEecCCCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccC
Q psy11756 94 ASLFLNKCQGCRLPIKDV--VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFC 157 (233)
Q Consensus 94 ~~~~~~~C~~C~~~i~~~--~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~ 157 (233)
...+.++|.+|+++|... ++.+.++.||+.||+|..|+++|.+..|+..+|++||..||.++|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 346678999999999743 6789999999999999999999987789999999999999998875
No 81
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=90.09 Aligned_cols=59 Identities=34% Similarity=0.669 Sum_probs=53.4
Q ss_pred cCCCCCCCCcccc--ccEEecCCCeee--cCCCCCCCCCcccccCceeccCCceec-hhhhhhc
Q psy11756 97 FLNKCQGCRLPIK--DVVVTALNQTWH--PDHFVCISCGTKLLYKGFYEREGNAFC-TACYEGK 155 (233)
Q Consensus 97 ~~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~~C-~~c~~~~ 155 (233)
|+++|.+|+++|. +..|.+.++.|| ++||+|..|+++|.+..|+..+|++|| ..||.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 3578999999998 679999999999 999999999999998889999999999 8998654
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=102.70 Aligned_cols=61 Identities=23% Similarity=0.603 Sum_probs=54.8
Q ss_pred hccCCCCCCCCCCcccc-EEEEcCceecCCCCCcCCCCCCCC--CCceEeeCCeeeChhhhhcc
Q psy11756 154 GKFCPKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPIS--GPTFRVCEADVVCVECSEKG 214 (233)
Q Consensus 154 ~~~~~~C~~C~~~I~~~-~i~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~C~~~~ 214 (233)
..++++|++|+++|.+. .|.+.++.||+.||+|..|++.|. +..|+..+|.|||+.||.++
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhh
Confidence 45578999999999887 489999999999999999999995 57899999999999999764
No 83
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.40 E-value=1.4e-13 Score=102.04 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=63.1
Q ss_pred Cccccccccccc--cEeeecCCCcCcCCCccCCCCCCCC-CCceeeeCCccccccccccccCCCCCCCCcccc
Q psy11756 40 PKCAACQGLIQN--IIVQALDKTWHPEHFRCTHCRIPIA-TQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIK 109 (233)
Q Consensus 40 ~~C~~C~~~I~~--~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i~ 109 (233)
+.|.+|++.|.. .++.++++.||+.||+|..|+++|. +..|+.+++++||..||.+++.++|..+..++.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 489999999985 6789999999999999999999994 567999999999999999999999988877764
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.5e-12 Score=89.45 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=55.3
Q ss_pred CCCCCCCCcccc-ccEEecCCCeeecCCCCCCCCCcccccCcee--ccCCceechhhhhhccCCCC
Q psy11756 98 LNKCQGCRLPIK-DVVVTALNQTWHPDHFVCISCGTKLLYKGFY--EREGNAFCTACYEGKFCPKC 160 (233)
Q Consensus 98 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~~C~~c~~~~~~~~C 160 (233)
.++|.+|+++|. ...+.+.++.||+.||+|..|+++|....|+ ..+|++||..||.++++..+
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 468999999995 4577899999999999999999999887787 47999999999999887654
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.75 E-value=9e-06 Score=44.66 Aligned_cols=28 Identities=39% Similarity=0.807 Sum_probs=25.1
Q ss_pred CCccccccccccc-cEeeecCCCcCcCCC
Q psy11756 39 YPKCAACQGLIQN-IIVQALDKTWHPEHF 66 (233)
Q Consensus 39 ~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf 66 (233)
.+.|..|++.|+. +.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 4689999999987 778899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.36 E-value=3.5e-05 Score=42.26 Aligned_cols=28 Identities=39% Similarity=0.981 Sum_probs=24.0
Q ss_pred CCCCCCCCCCcc-ccEEEEcCceecCCCC
Q psy11756 157 CPKCFGCGKPIT-ETAIKVHDRKWHEACF 184 (233)
Q Consensus 157 ~~~C~~C~~~I~-~~~i~~~~~~~H~~Cf 184 (233)
.++|++|++.|- .+.|.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 568999999995 3568889999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.22 E-value=0.08 Score=38.09 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=62.1
Q ss_pred CCccCCCCCCCCCC------ceeeeCCccccccccccc--cCCCCCCCCccccccEEecCCCeeecCCCCCCCCCccccc
Q psy11756 65 HFRCTHCRIPIATQ------KFHVHAGSPYCVEDYASL--FLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLY 136 (233)
Q Consensus 65 Cf~C~~C~~~l~~~------~~~~~~~~~yC~~c~~~~--~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~ 136 (233)
=+.|..|...+.+. .....=|..||..|..+. ....|..|++.+....+.. ...-..-..|..|...+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~--l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP--IYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE--CBCSSSSCBCTTTCCBHHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc--cccCCCCCCCCCCCCcccc
Confidence 36788887766431 133455778888887553 2357888888885442211 1112344667888776642
Q ss_pred C------ceeccCCceechhhhhh--ccCCCCCCCCCCccccE
Q psy11756 137 K------GFYEREGNAFCTACYEG--KFCPKCFGCGKPITETA 171 (233)
Q Consensus 137 ~------~~~~~~g~~~C~~c~~~--~~~~~C~~C~~~I~~~~ 171 (233)
. .....=|..||..|..+ .....|+.|...|..+.
T Consensus 85 ~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp HHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred ccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 1 12334577888888643 22457777777775543
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.21 E-value=0.22 Score=35.66 Aligned_cols=90 Identities=19% Similarity=0.412 Sum_probs=57.5
Q ss_pred CCcccccccccccc-------EeeecCCCcCcCCC--------ccCCCCCCCCCCceeeeCCccccccccccccCCCCCC
Q psy11756 39 YPKCAACQGLIQNI-------IVQALDKTWHPEHF--------RCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQG 103 (233)
Q Consensus 39 ~~~C~~C~~~I~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~ 103 (233)
...|..|...+... ++..-|-.||..|+ .|..|++.+........ +.......|..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l---------~i~~~~~~C~i 77 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI---------YIGSGTVSCPI 77 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC---------BCSSSSCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc---------ccCCCCCCCCC
Confidence 35799998877543 44445777777775 89999999986543221 11122356777
Q ss_pred CCcccccc-------EEecCCCeeecCCC--------CCCCCCcccccC
Q psy11756 104 CRLPIKDV-------VVTALNQTWHPDHF--------VCISCGTKLLYK 137 (233)
Q Consensus 104 C~~~i~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 137 (233)
|...+... .+..-+..||..|. .|..|+.++...
T Consensus 78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 77766432 44455777887774 688888877643
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=79.86 E-value=2.2 Score=29.48 Aligned_cols=64 Identities=23% Similarity=0.468 Sum_probs=39.8
Q ss_pred CCCCCCcccccCceeccCCceechhhhhh---ccCCCCCCCCCCccccEEEEcCceecCCCCCcC---CCCCCCC
Q psy11756 126 VCISCGTKLLYKGFYEREGNAFCTACYEG---KFCPKCFGCGKPITETAIKVHDRKWHEACFRCG---RCRRPIS 194 (233)
Q Consensus 126 ~C~~C~~~l~~~~~~~~~g~~~C~~c~~~---~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~---~C~~~l~ 194 (233)
.|..|+.|+....-..-=+..+|-+|+.. .....|..|..+|..=....+|..| .|. .|++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if-----~C~~~~~CkrtyL 72 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLF-----MCSIVQGCKRTYL 72 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCC-----CCCCCCCCCCCCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEE-----ECCCCCCHHHHhc
Confidence 36777777753222233467899999854 4456899999999653333445554 344 5666553
No 90
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=78.77 E-value=1 Score=25.95 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=16.9
Q ss_pred eEeeCCeeeChhhhhccccCC
Q psy11756 198 FRVCEADVVCVECSEKGREEG 218 (233)
Q Consensus 198 ~~~~~~~~~C~~C~~~~~~~~ 218 (233)
|+.++-+|+|.+|++++...-
T Consensus 22 ~mSVnTQP~CHEC~errq~~~ 42 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQKNQ 42 (49)
T ss_dssp BCCTTTTTSCHHHHHHHHTTS
T ss_pred EEEecCccchHHHHHHHhhcc
Confidence 666799999999999776543
No 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=78.31 E-value=2.5 Score=27.07 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCcccc
Q psy11756 123 DHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITET 170 (233)
Q Consensus 123 ~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~ 170 (233)
.-|.|..|...+.. +....-|..||..|..+.+ ...|+.|+.++...
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45788888877753 4556789999999975544 34688888877544
No 92
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.74 E-value=1.7 Score=27.47 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=30.8
Q ss_pred CCCCCCCCcccccCceeccCCceechhhhhhcc-----CCCCCCCCCCcccc
Q psy11756 124 HFVCISCGTKLLYKGFYEREGNAFCTACYEGKF-----CPKCFGCGKPITET 170 (233)
Q Consensus 124 Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~-----~~~C~~C~~~I~~~ 170 (233)
-+.|..|...+.. .....=|..||..|..+.. ...|+.|..+|...
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3567777776653 3444668889999976654 23788888877543
No 93
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.01 E-value=3.6 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.537 Sum_probs=30.8
Q ss_pred cCceecCCCCCcCCCCCC-CCCCceEee--CCeeeChhhhhcccc
Q psy11756 175 HDRKWHEACFRCGRCRRP-ISGPTFRVC--EADVVCVECSEKGRE 216 (233)
Q Consensus 175 ~~~~~H~~Cf~C~~C~~~-l~~~~~~~~--~~~~~C~~C~~~~~~ 216 (233)
....+|+ ..|..|++. |.|.+|.-. .+--+|..|+.....
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 3466787 889999975 787777765 456799999988764
No 94
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.62 E-value=2.6 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=28.9
Q ss_pred CCCCCCCcccccCceec-cCCceechhhhhhcc--CCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYKGFYE-REGNAFCTACYEGKF--CPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~--~~~C~~C~~~I~~~ 170 (233)
+.|..|...+.. .... .=|..||..|..+.. ...|+.|..+|...
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 566777666643 3333 567888888864433 46788888877543
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=75.97 E-value=3 Score=25.45 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=25.9
Q ss_pred CcCCCCCCCCCCceEeeCCeeeC-hhhhhccccC
Q psy11756 185 RCGRCRRPISGPTFRVCEADVVC-VECSEKGREE 217 (233)
Q Consensus 185 ~C~~C~~~l~~~~~~~~~~~~~C-~~C~~~~~~~ 217 (233)
.|..|+..+....-+..||+.|| +.|.+..+..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH~~~ 42 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGHTGG 42 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTSCSS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccCCCC
Confidence 37888888877777788999998 8888776543
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.76 E-value=16 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=26.9
Q ss_pred CCCccccccccccccEeeecC-----CCcCcCCCccCCCCCCCCCCceeeeCCcccccccccc
Q psy11756 38 MYPKCAACQGLIQNIIVQALD-----KTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYAS 95 (233)
Q Consensus 38 ~~~~C~~C~~~I~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~ 95 (233)
....| .|++.-.+..|...+ .-||..|.. |... ..++.||..|...
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCccCc
Confidence 34577 888876666555544 235888764 3221 1356778777543
No 97
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.21 E-value=3 Score=25.69 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=31.0
Q ss_pred CCCCCCCc-ccccCc---eeccCCceechhhhhhcc---CCCCCCCCCCccccE
Q psy11756 125 FVCISCGT-KLLYKG---FYEREGNAFCTACYEGKF---CPKCFGCGKPITETA 171 (233)
Q Consensus 125 f~C~~C~~-~l~~~~---~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~~ 171 (233)
+.|..|.. .+.... ....=|..+|..|..+.+ ...|+.|.+++....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 56778877 554332 234568889999976552 356888888886543
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.78 E-value=1.3 Score=27.46 Aligned_cols=45 Identities=27% Similarity=0.645 Sum_probs=30.5
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~ 170 (233)
+.|..|...+.. .....=|..||..|..+.. ...|+.|..+|...
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCS-PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESS-CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcC-eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 567777776653 3334567889999976554 35788888887543
No 99
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.36 E-value=3 Score=29.22 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=27.7
Q ss_pred CCCCCCCcccccCceec-cCCceechhhhhhccCCCCCCCCCCcc
Q psy11756 125 FVCISCGTKLLYKGFYE-REGNAFCTACYEGKFCPKCFGCGKPIT 168 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~~~~C~~C~~~I~ 168 (233)
+.|..|...+.. +... .=|..||..|........|+.|..++.
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 566777666543 3333 567777877776665567777777764
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.76 E-value=5.6 Score=27.65 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=41.7
Q ss_pred CCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCccccEEEE---cCceecCCCCCcCCCCCCC
Q psy11756 117 NQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKV---HDRKWHEACFRCGRCRRPI 193 (233)
Q Consensus 117 ~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~---~~~~~H~~Cf~C~~C~~~l 193 (233)
++.||+.|..=. +. . +..+.-+|..|. .|..|++.-.+..|.. -++.||..|..- +|
T Consensus 29 ~~~~H~~Cl~~~-----~~--~--~~~~~W~C~~C~------~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl 88 (111)
T 2ysm_A 29 GQHYHGMCLDIA-----VT--P--LKRAGWQCPECK------VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VM 88 (111)
T ss_dssp CCEECTTTTTCC-----CC--T--TTSTTCCCTTTC------CCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CC
T ss_pred CCCcChHHhCCc-----cc--c--ccccCccCCcCC------cccccCccCCCCCeeECCCCCcHHhHHhcCC-----cc
Confidence 456788775411 11 0 123455677773 6788877655444443 346799998743 23
Q ss_pred CCCceEeeCCeeeChhhhhc
Q psy11756 194 SGPTFRVCEADVVCVECSEK 213 (233)
Q Consensus 194 ~~~~~~~~~~~~~C~~C~~~ 213 (233)
.. +-.+.-+|..|...
T Consensus 89 ~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 89 KS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp SS----CCSSCCCCHHHHCC
T ss_pred cc----CCCCCcCCcCCcCc
Confidence 21 11467888888655
No 101
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.78 E-value=2.3 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.9
Q ss_pred CCccccccccccc
Q psy11756 39 YPKCAACQGLIQN 51 (233)
Q Consensus 39 ~~~C~~C~~~I~~ 51 (233)
...|..|...+..
T Consensus 15 ~~~C~IC~~~~~~ 27 (69)
T 2ea6_A 15 TVSCPICMDGYSE 27 (69)
T ss_dssp CCCCTTTCCCHHH
T ss_pred CCCCcccCccccc
Confidence 4578888777644
No 102
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.68 E-value=4.7 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=20.7
Q ss_pred CccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCccc
Q psy11756 66 FRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPI 108 (233)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i 108 (233)
+.|..|...+........=|..||..|........|..|+.++
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 4455555444432111134455666665544434566666555
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=69.36 E-value=13 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCccccccccccccEeeec----CCCcCcCCCccCCCCCCCCCCceeeeCCccccccccccccCCCCCCCCccc
Q psy11756 39 YPKCAACQGLIQNIIVQAL----DKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPI 108 (233)
Q Consensus 39 ~~~C~~C~~~I~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~C~~C~~~i 108 (233)
...|..|+. .+++|.-. .+.||..|+. |.. ...|.-||..| .|..|++..
T Consensus 15 ~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 15 EDYCFQCGD--GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CSSCTTTCC--CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCcCCC--CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 457888984 34655544 2568988864 332 23567789887 577887754
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.71 E-value=2.3 Score=28.04 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCCCccccccccccc-cEeeecCCCcCcCCCccCCCCCCCCCCceeeeCCcccccc
Q psy11756 37 TMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVE 91 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~ 91 (233)
...-.|.-|++.+.+ -+|......-|.-||.|+. ..|.. ....+++||..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA---QGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH---HHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh---cCCCCcEECCC
Confidence 344689999999988 7899899999999999983 33332 23456788864
No 105
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.47 E-value=3.5 Score=27.76 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCCCCCCcccccCceec-cCCceechhhhhhcc--CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYE-REGNAFCTACYEGKF--CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~--~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. .... .=|..||..|..+.. ...|+.|..++..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 566777666643 3333 467788888865433 3467777777654
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.22 E-value=3.2 Score=26.37 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=16.4
Q ss_pred CCCccccccccccc-cEe-ee-cCCCcCcCCC
Q psy11756 38 MYPKCAACQGLIQN-IIV-QA-LDKTWHPEHF 66 (233)
Q Consensus 38 ~~~~C~~C~~~I~~-~~~-~~-~~~~~H~~Cf 66 (233)
....|..|...+.. ..+ .. -+..||..|+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 34578888887754 222 22 3445666554
No 107
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.36 E-value=7.3 Score=24.94 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCCCCCCcccccCceeccCCceechhhhhhcc--------CCCCCCCCCCcccc
Q psy11756 124 HFVCISCGTKLLYKGFYEREGNAFCTACYEGKF--------CPKCFGCGKPITET 170 (233)
Q Consensus 124 Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--------~~~C~~C~~~I~~~ 170 (233)
-+.|..|...+.. .....=|..||..|..... ...|+.|..+|...
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3567777766643 3344567788888875422 45688887777543
No 108
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=63.51 E-value=2.3 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.7
Q ss_pred CcCCCCCCCCCCceEeeCCeeeChhhhhc
Q psy11756 185 RCGRCRRPISGPTFRVCEADVVCVECSEK 213 (233)
Q Consensus 185 ~C~~C~~~l~~~~~~~~~~~~~C~~C~~~ 213 (233)
.|..|+......+-...+|+++|..|+.+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 49999988876777778999999999976
No 109
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=63.31 E-value=3 Score=27.17 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=28.0
Q ss_pred CCCCCCCcccccC--ceec-cCCceechhhhhhcc---CCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYK--GFYE-REGNAFCTACYEGKF---CPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~--~~~~-~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~ 170 (233)
+.|..|-.++... .+.. .=|..+|..|+.+.. ...|+.|.+++...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 5567776666422 1111 257788988876553 35688888777554
No 110
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.80 E-value=5.1 Score=25.72 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=27.3
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc--------CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF--------CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--------~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. .....=|..||..|..... ...|+.|...|..
T Consensus 20 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 566677666543 2333456778888864422 4578888877754
No 111
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=62.78 E-value=2.6 Score=25.60 Aligned_cols=47 Identities=21% Similarity=0.447 Sum_probs=29.5
Q ss_pred CCCCCCCcccccC-----c-eeccCCceechhhhhhcc--CCCCCCCCCCccccE
Q psy11756 125 FVCISCGTKLLYK-----G-FYEREGNAFCTACYEGKF--CPKCFGCGKPITETA 171 (233)
Q Consensus 125 f~C~~C~~~l~~~-----~-~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~~~~ 171 (233)
+.|..|...+... . ....=|..||..|..+.. ...|+.|..+|....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 5677887766421 1 334567888888875432 457888877776543
No 112
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=62.46 E-value=6.5 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=27.9
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhccC---CCCCCCCCCcc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKFC---PKCFGCGKPIT 168 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~---~~C~~C~~~I~ 168 (233)
+.|..|...+.. .....=|+.||..|..+... ..|+.|...|.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 567777766643 34445678889888765542 36777776664
No 113
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=62.01 E-value=9.8 Score=22.10 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=13.0
Q ss_pred CCceechhhhhhcc--CCCCCCCCCCcc
Q psy11756 143 EGNAFCTACYEGKF--CPKCFGCGKPIT 168 (233)
Q Consensus 143 ~g~~~C~~c~~~~~--~~~C~~C~~~I~ 168 (233)
=|..||..|..+.. ...|+.|..+|.
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34555655543221 245666665553
No 114
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.24 E-value=6.6 Score=23.42 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=20.6
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPI 167 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I 167 (233)
+.|..|...+.. .....=|..||..|..+ ....|+.|...+
T Consensus 7 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKC-PKLLPCLHTLCSGCLEA-SGMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBC-CSCSTTSCCSBTTTCSS-SSSSCSSCCSSS
T ss_pred CCceEeCCccCC-eEEcCCCCcccHHHHcc-CCCCCCcCCcEe
Confidence 445556554432 22233455566666433 234566666655
No 115
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.83 E-value=8 Score=24.80 Aligned_cols=43 Identities=26% Similarity=0.725 Sum_probs=26.1
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc--CCCCCCCCCCcc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF--CPKCFGCGKPIT 168 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~ 168 (233)
+.|..|...+.. .....=|..||..|..+.+ ...|+.|..++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 566677666543 3444557778888864433 346777776664
No 116
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=60.64 E-value=6.4 Score=24.99 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---------CCCCCCCCCCcc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---------CPKCFGCGKPIT 168 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---------~~~C~~C~~~I~ 168 (233)
+.|..|...+.. .....=|..||..|..+.. ...|+.|..++.
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 567777666543 2334567778888875433 235666666654
No 117
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.42 E-value=3.9 Score=25.75 Aligned_cols=10 Identities=30% Similarity=1.085 Sum_probs=5.2
Q ss_pred CCCCCCCccc
Q psy11756 99 NKCQGCRLPI 108 (233)
Q Consensus 99 ~~C~~C~~~i 108 (233)
..|..|+.+|
T Consensus 51 ~~CP~Cr~~~ 60 (72)
T 2djb_A 51 NRCPKCNIVV 60 (72)
T ss_dssp SSCTTTCCCC
T ss_pred CcCCCcCccc
Confidence 3455555554
No 118
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=59.95 E-value=10 Score=23.17 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=21.1
Q ss_pred CCCCCCcccccCceeccCCceechhhhhhc--cCCCCCCCCCCcc
Q psy11756 126 VCISCGTKLLYKGFYEREGNAFCTACYEGK--FCPKCFGCGKPIT 168 (233)
Q Consensus 126 ~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~--~~~~C~~C~~~I~ 168 (233)
.|..|...+........=|..||..|..+. ....|+.|..+|.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 345555444322233334566666665332 1345666666654
No 119
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.42 E-value=2.5 Score=26.42 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.0
Q ss_pred CCccccccccccc
Q psy11756 39 YPKCAACQGLIQN 51 (233)
Q Consensus 39 ~~~C~~C~~~I~~ 51 (233)
...|..|...+..
T Consensus 10 ~~~C~IC~~~~~~ 22 (71)
T 3ng2_A 10 TVSCPICMDGYSE 22 (71)
T ss_dssp CCBCTTTCCBHHH
T ss_pred CCCCcccChhhhc
Confidence 3467777766543
No 120
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.33 E-value=7.6 Score=24.25 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=7.8
Q ss_pred Ccccccccccccc
Q psy11756 40 PKCAACQGLIQNI 52 (233)
Q Consensus 40 ~~C~~C~~~I~~~ 52 (233)
..|..|...+...
T Consensus 16 ~~C~IC~~~~~~~ 28 (71)
T 2d8t_A 16 PECAICLQTCVHP 28 (71)
T ss_dssp CBCSSSSSBCSSE
T ss_pred CCCccCCcccCCC
Confidence 4677776665443
No 121
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=59.07 E-value=7.1 Score=26.69 Aligned_cols=44 Identities=18% Similarity=0.480 Sum_probs=27.4
Q ss_pred CCCCCCCcccccCceec-cCCceechhhhhhcc--CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYE-REGNAFCTACYEGKF--CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~--~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. .... .=|..||..|..... ...|+.|...|..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 567777666643 3343 567888888865443 3567777766643
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.46 E-value=11 Score=26.26 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=45.7
Q ss_pred CCeeecCCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCccccEEEEc---CceecCCCCCcCCCCCCC
Q psy11756 117 NQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVH---DRKWHEACFRCGRCRRPI 193 (233)
Q Consensus 117 ~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~---~~~~H~~Cf~C~~C~~~l 193 (233)
++.||+.|..=.. .+ .-.+..+.-+|..| ..|..|++.-.++.|..- ++.||..|..= +|
T Consensus 30 ~~~~H~~Cl~~~~---~~---~~~~~~~~W~C~~C------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl 92 (114)
T 2kwj_A 30 GRSGHPTCLQFTL---NM---TEAVKTYKWQCIEC------KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP-----PV 92 (114)
T ss_dssp CCEECTTTTTCCH---HH---HHHHHHTTCCCGGG------CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS-----CC
T ss_pred CCccchhhCCChh---hh---hhccCCCccCcccc------CccCcccccCCCCceEEcCCCCccccccccCC-----Cc
Confidence 5678887753110 00 00123445668777 378888887655555543 46799998742 23
Q ss_pred CCCceEeeCCeeeChhhhhccc
Q psy11756 194 SGPTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 194 ~~~~~~~~~~~~~C~~C~~~~~ 215 (233)
.. +-.|.-+|..|.....
T Consensus 93 ~~----~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 93 AE----PPEGSWSCHLCWELLK 110 (114)
T ss_dssp SS----CCSSCCCCHHHHHHHH
T ss_pred cC----CCCCCeECccccchhh
Confidence 21 1246788999976543
No 123
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=57.80 E-value=4 Score=28.12 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=29.0
Q ss_pred cCCCCCCCCCCceeeeCCcccccccccc---ccCCCCCCCCccccc
Q psy11756 68 CTHCRIPIATQKFHVHAGSPYCVEDYAS---LFLNKCQGCRLPIKD 110 (233)
Q Consensus 68 C~~C~~~l~~~~~~~~~~~~yC~~c~~~---~~~~~C~~C~~~i~~ 110 (233)
|..|+.|+....-...=+-.+|..|+.. .....|..|+.+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6778888864333233345788888854 345789999999854
No 124
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=57.22 E-value=5 Score=27.20 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=27.1
Q ss_pred CCCCCCCcccccCcee-ccCCceechhhhhhcc--C-CCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFY-EREGNAFCTACYEGKF--C-PKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~-~~~g~~~C~~c~~~~~--~-~~C~~C~~~I~~ 169 (233)
+.|..|...+.. ... ..=|..||..|..+.. . ..|+.|..++..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 567777766643 333 4557888888864432 2 467777777644
No 125
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=56.76 E-value=12 Score=25.36 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=33.9
Q ss_pred cCCCCCCCCCcccccCceeccCCceechhhhhhcc--CCCCCCCCCCcccc
Q psy11756 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF--CPKCFGCGKPITET 170 (233)
Q Consensus 122 ~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~~~ 170 (233)
+.-|.|..|...+. .+.....|..||..|-.+.. ...|+.|+.++...
T Consensus 27 p~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 66789999988775 45666689999998854332 35677777776543
No 126
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=56.37 E-value=11 Score=27.08 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=26.7
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc--CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF--CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. +....=|+.||..|..... ...|+.|..+|..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 457777666542 3444567788888864322 3457777777644
No 127
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=55.97 E-value=13 Score=24.39 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=34.0
Q ss_pred cCCCCCCCCCcccccCceeccCCceechhhhhhcc--CCCCCCCCCCcccc
Q psy11756 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF--CPKCFGCGKPITET 170 (233)
Q Consensus 122 ~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~~~ 170 (233)
+.-|.|..|...+. .+.....|..||..|-.+.. ...|+.|+.++...
T Consensus 12 p~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 45688999988775 45666789999988853322 45788888877543
No 128
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.86 E-value=17 Score=23.10 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=7.0
Q ss_pred CCCCCCCcccc
Q psy11756 99 NKCQGCRLPIK 109 (233)
Q Consensus 99 ~~C~~C~~~i~ 109 (233)
..|..|+..+.
T Consensus 60 ~~CP~Cr~~~~ 70 (85)
T 2ecw_A 60 GNCPVCRVPYP 70 (85)
T ss_dssp BCCTTTCCCCC
T ss_pred CCCCCCCCcCC
Confidence 46677776664
No 129
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.31 E-value=7.4 Score=26.60 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhccC-----CCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKFC-----PKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~-----~~C~~C~~~I~~ 169 (233)
+.|..|...+.. .....=|+.||..|..+... ..|+.|..+|..
T Consensus 22 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC-eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456666665542 23334567778887654332 367777777654
No 130
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=54.13 E-value=12 Score=25.35 Aligned_cols=47 Identities=11% Similarity=-0.079 Sum_probs=32.6
Q ss_pred cCCCCCCCCCcccccCceeccCC-ceechhhhhhcc--CCCCCCCCCCccc
Q psy11756 122 PDHFVCISCGTKLLYKGFYEREG-NAFCTACYEGKF--CPKCFGCGKPITE 169 (233)
Q Consensus 122 ~~Cf~C~~C~~~l~~~~~~~~~g-~~~C~~c~~~~~--~~~C~~C~~~I~~ 169 (233)
+.-|.|..|...+. .+.....| ..||..|..+.. ...|+.|+.++..
T Consensus 20 p~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 56788999987775 45666677 999998864433 3467777776644
No 131
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=54.11 E-value=12 Score=23.69 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=27.4
Q ss_pred CCCCCCCcccccCceeccCCce-echhhhhhccCCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNA-FCTACYEGKFCPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~-~C~~c~~~~~~~~C~~C~~~I~~~ 170 (233)
+.|..|...+.. .....=|.. +|..|.... ..|+.|..+|...
T Consensus 25 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCC-EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC-EEEcCCCChhHHHHhhhcC--ccCCCcCcCccCc
Confidence 356666555432 233345666 888887665 6888888888654
No 132
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.02 E-value=9.1 Score=24.26 Aligned_cols=36 Identities=8% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCCCCCCCccccEEEEcCceecCCC---------CCcCCCCCCCC
Q psy11756 159 KCFGCGKPITETAIKVHDRKWHEAC---------FRCGRCRRPIS 194 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~~~~~H~~C---------f~C~~C~~~l~ 194 (233)
.|..|...+.+.++..-|..|+..| ..|..|+..+.
T Consensus 10 ~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 5666666665555555566666655 23666666654
No 133
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=53.41 E-value=8.6 Score=28.63 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~ 169 (233)
|.|..|...+.. +....-|..||..|..+.. ...|+.|..+|..
T Consensus 19 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456666665543 2444566777777764433 2367777666644
No 134
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.00 E-value=5.9 Score=26.60 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=9.7
Q ss_pred eeeChhhhhccccCCC
Q psy11756 204 DVVCVECSEKGREEGK 219 (233)
Q Consensus 204 ~~~C~~C~~~~~~~~~ 219 (233)
-|+|+.||+..+.+++
T Consensus 43 FPvCrpCyEYErkeG~ 58 (93)
T 1weo_A 43 FPACRPCYEYERREGT 58 (93)
T ss_dssp CCCCHHHHHHHHHTSC
T ss_pred ChhhHHHHHHHHhccC
Confidence 3667777766655544
No 135
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=52.31 E-value=9.7 Score=26.33 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~ 170 (233)
+.|..|...+.. +....=|..||..|..+.. ...|+.|..+|...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 567777766643 3445678888888875432 45788888887653
No 136
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.38 E-value=6.4 Score=24.40 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc--CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF--CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~--~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. ....=|..||..|..+.. ...|+.|..+|..
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456666655543 334456777777765443 3567777666643
No 137
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=50.93 E-value=8.1 Score=25.40 Aligned_cols=43 Identities=19% Similarity=0.512 Sum_probs=30.3
Q ss_pred CCCCCCCCcccccCceecc-CCceechhhhhhcc----CCCCCCCCCCc
Q psy11756 124 HFVCISCGTKLLYKGFYER-EGNAFCTACYEGKF----CPKCFGCGKPI 167 (233)
Q Consensus 124 Cf~C~~C~~~l~~~~~~~~-~g~~~C~~c~~~~~----~~~C~~C~~~I 167 (233)
-+.|..|...+.. +.... =|+.||..|....+ ...|+.|..++
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4678888877753 45555 38999999975443 25788888776
No 138
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=50.75 E-value=8.8 Score=28.45 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=27.3
Q ss_pred CCCCCCCcccccCceec-cCCceechhhhhhcc---CCCCCCCCCCcc
Q psy11756 125 FVCISCGTKLLYKGFYE-REGNAFCTACYEGKF---CPKCFGCGKPIT 168 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~---~~~C~~C~~~I~ 168 (233)
+.|..|...+.. .... .=|..||..|..... ...|+.|..+|.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456666665543 2332 457888888875443 346888888874
No 139
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=50.67 E-value=17 Score=22.86 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=5.7
Q ss_pred CCCCCCCccc
Q psy11756 99 NKCQGCRLPI 108 (233)
Q Consensus 99 ~~C~~C~~~i 108 (233)
..|..|+.++
T Consensus 53 ~~CP~Cr~~~ 62 (74)
T 2yur_A 53 HTCPTCHQND 62 (74)
T ss_dssp SCCSSSCCSS
T ss_pred CcCCCCCCcC
Confidence 3566666654
No 140
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.07 E-value=24 Score=22.14 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=9.1
Q ss_pred CCccccccccccc
Q psy11756 39 YPKCAACQGLIQN 51 (233)
Q Consensus 39 ~~~C~~C~~~I~~ 51 (233)
...|..|...+..
T Consensus 15 ~~~C~IC~~~~~~ 27 (78)
T 2ect_A 15 GLECPVCKEDYAL 27 (78)
T ss_dssp SCCCTTTTSCCCT
T ss_pred CCCCeeCCccccC
Confidence 3578888777754
No 141
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=49.72 E-value=10 Score=26.56 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=28.9
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. +....=|+.||..|..... ...|+.|..+|..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 567777766653 3444567888888875433 2378888877754
No 142
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.67 E-value=23 Score=23.33 Aligned_cols=9 Identities=22% Similarity=0.792 Sum_probs=5.1
Q ss_pred CCCCCCccc
Q psy11756 100 KCQGCRLPI 108 (233)
Q Consensus 100 ~C~~C~~~i 108 (233)
.|..|+.+|
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 455565555
No 143
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=48.63 E-value=5.3 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=18.8
Q ss_pred CCCCCCCCCCccccEEEEc------------CceecCCCCC
Q psy11756 157 CPKCFGCGKPITETAIKVH------------DRKWHEACFR 185 (233)
Q Consensus 157 ~~~C~~C~~~I~~~~i~~~------------~~~~H~~Cf~ 185 (233)
...|..|+..|.-+.|++. -..||..||.
T Consensus 25 Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 25 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 3478899999965443322 1358888874
No 144
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=48.17 E-value=9.2 Score=26.64 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCcccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITET 170 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~~ 170 (233)
+.|..|...+.. .....=|..||..|..+.. ...|+.|..+|...
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 567777766643 3445567888888875433 23788888887654
No 145
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=46.00 E-value=38 Score=23.73 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred ccCCCCCCCCCCceeeeCCccccccccc--cccCCCCCCCCccccc-cEEecCCCeeecCCCCCCCCCcccccCceeccC
Q psy11756 67 RCTHCRIPIATQKFHVHAGSPYCVEDYA--SLFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYERE 143 (233)
Q Consensus 67 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~--~~~~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~ 143 (233)
.|..|+..-....--..+|..+|..|.. ++... ..++.. ......... .=..|..|+...+...--..+
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~-----nRP~~KpKKR~~~~~~---~~~~C~~C~t~~tp~WRr~~~ 78 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ-----NRPLIKPKRRLSAARR---AGTSCANCQTTTTTLWRRNAN 78 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS-----CCCCSSCCCCCCCCCC---TTCCCTTTCCSCCSSCEECTT
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhhhccc-----cccccccccccccccc---ccccCCCcCCCCcceeEECCC
Confidence 4667776555444444556778888842 22110 111111 100011111 124667777655433222346
Q ss_pred Cceechhhh
Q psy11756 144 GNAFCTACY 152 (233)
Q Consensus 144 g~~~C~~c~ 152 (233)
|+.+|..|.
T Consensus 79 g~~lCNaCg 87 (115)
T 4hc9_A 79 GDPVCNACG 87 (115)
T ss_dssp SCEECHHHH
T ss_pred CCCcchHHH
Confidence 789999995
No 146
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.90 E-value=16 Score=23.43 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=6.1
Q ss_pred CCCCCCCccc
Q psy11756 99 NKCQGCRLPI 108 (233)
Q Consensus 99 ~~C~~C~~~i 108 (233)
..|..|++.+
T Consensus 57 ~~CP~Cr~~~ 66 (88)
T 2ct2_A 57 VRCPFCSKIT 66 (88)
T ss_dssp BCCTTTCCCB
T ss_pred cCCCCCCCcc
Confidence 4566666655
No 147
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=44.67 E-value=9.8 Score=26.26 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=13.3
Q ss_pred Ccccccccccccc---CCCCCCCCcccc
Q psy11756 85 GSPYCVEDYASLF---LNKCQGCRLPIK 109 (233)
Q Consensus 85 ~~~yC~~c~~~~~---~~~C~~C~~~i~ 109 (233)
|..||..|..+.. ...|..|+..+.
T Consensus 34 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 34 NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3445665554432 235677766653
No 148
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=44.40 E-value=8.3 Score=25.53 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=8.1
Q ss_pred CCccccccccccc
Q psy11756 39 YPKCAACQGLIQN 51 (233)
Q Consensus 39 ~~~C~~C~~~I~~ 51 (233)
...|..|...+..
T Consensus 40 ~~~C~IC~~~~~~ 52 (91)
T 2l0b_A 40 EMCCPICCSEYVK 52 (91)
T ss_dssp CSEETTTTEECCT
T ss_pred CCCCcccChhhcC
Confidence 4567777766543
No 149
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.63 E-value=20 Score=20.91 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=18.1
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGK 155 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~ 155 (233)
+.|..|...+.. .....=|..||..|..+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKE-PVIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSS-CCCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCc-cEeCCCCCccCHHHHHHH
Confidence 456667666543 233445777888886554
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=43.56 E-value=18 Score=28.83 Aligned_cols=50 Identities=12% Similarity=-0.014 Sum_probs=36.3
Q ss_pred ecCCCCCCCCCcccccCceeccCCceechhhhhhc---cCCCCCCCCCCccccE
Q psy11756 121 HPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGK---FCPKCFGCGKPITETA 171 (233)
Q Consensus 121 H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~---~~~~C~~C~~~I~~~~ 171 (233)
-+.-|.|..|...+. .+.....|..||..|..+. ....|+.|+.++....
T Consensus 205 ~~~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 456788999988775 4566678999999996432 2334999998886543
No 151
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.49 E-value=20 Score=22.53 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCCCCCcccccCceeccCCce-echhhhhhccCCCCCCCCCCcccc
Q psy11756 126 VCISCGTKLLYKGFYEREGNA-FCTACYEGKFCPKCFGCGKPITET 170 (233)
Q Consensus 126 ~C~~C~~~l~~~~~~~~~g~~-~C~~c~~~~~~~~C~~C~~~I~~~ 170 (233)
.|..|...+.. .....=|.. +|..|..+. ..|+.|..+|...
T Consensus 27 ~C~IC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 27 LCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITFK 69 (75)
T ss_dssp SCSSSCSSCCC-BCCSSSCCCCBCHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCcCCCCCCC-EEEecCCCHHHHHHHhhCC--CCCccCCceecCc
Confidence 45566554432 222344666 888887654 6889998888653
No 152
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=43.35 E-value=5.5 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=18.4
Q ss_pred CCCCCCCCCccccEEEEc------------CceecCCCCC
Q psy11756 158 PKCFGCGKPITETAIKVH------------DRKWHEACFR 185 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~~~------------~~~~H~~Cf~ 185 (233)
..|.+|+..|.-+.|++. ...||..||.
T Consensus 21 A~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 21 SSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 478889999965554432 2357788874
No 153
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=43.35 E-value=15 Score=26.93 Aligned_cols=44 Identities=18% Similarity=0.533 Sum_probs=25.6
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhhcc---CCCCCCCCCCccc
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF---CPKCFGCGKPITE 169 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~---~~~C~~C~~~I~~ 169 (233)
+.|..|...+.. +....=|..||..|..... ...|+.|..+|..
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 456666655532 3334556777887764433 2357777777654
No 154
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=40.00 E-value=11 Score=29.27 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCCCCCcccccCceeccCCceechhhhhh
Q psy11756 125 FVCISCGTKLLYKGFYEREGNAFCTACYEG 154 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~~~g~~~C~~c~~~ 154 (233)
..|..|+-......-...+|+++|..|+..
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 369999988766556677999999999854
No 155
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.69 E-value=7.9 Score=26.44 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=5.0
Q ss_pred Cccccccccc
Q psy11756 40 PKCAACQGLI 49 (233)
Q Consensus 40 ~~C~~C~~~I 49 (233)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 4555555443
No 156
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=39.11 E-value=13 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.557 Sum_probs=28.7
Q ss_pred CCCCCCCCccccEEEEcCceecCCC--------CCcCCCCCCCCC
Q psy11756 159 KCFGCGKPITETAIKVHDRKWHEAC--------FRCGRCRRPISG 195 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~~~~~H~~C--------f~C~~C~~~l~~ 195 (233)
.|..|...+...++..-|+.||..| ..|..|.+.+..
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 5888888877666666788899888 349999988853
No 157
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=38.11 E-value=27 Score=26.54 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=35.7
Q ss_pred cCCCCCCCCCcccccCceeccCCceechhhhhhc---cCCCCCCCCCCccccE
Q psy11756 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGK---FCPKCFGCGKPITETA 171 (233)
Q Consensus 122 ~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~---~~~~C~~C~~~I~~~~ 171 (233)
+.-|.|..|...+. .+.....|..||..|.... .+..|+.|+.++....
T Consensus 104 p~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 56788999988775 4677789999999885332 2346999988886543
No 158
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=37.96 E-value=24 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCcCCCCCCCCC-CceEeeCCeeeChhhhhccc
Q psy11756 184 FRCGRCRRPISG-PTFRVCEADVVCVECSEKGR 215 (233)
Q Consensus 184 f~C~~C~~~l~~-~~~~~~~~~~~C~~C~~~~~ 215 (233)
.+|+.|++.-.. .....-.|..+|..|-+...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~~ 44 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCN 44 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHHHH
Confidence 368889987754 33333366789999976543
No 159
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.48 E-value=20 Score=23.80 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.6
Q ss_pred CCCCCCCCCcccccCceec-cCCceechhhhhh
Q psy11756 123 DHFVCISCGTKLLYKGFYE-REGNAFCTACYEG 154 (233)
Q Consensus 123 ~Cf~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~ 154 (233)
.-|.|..|...+. .+... ..|..||..|..+
T Consensus 6 ~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~ 37 (94)
T 2yu4_A 6 SGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVR 37 (94)
T ss_dssp SCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHH
T ss_pred cEeECcCcCchhc-CCEEcCCCCCeecHHHHHH
Confidence 3478888888775 45666 4899999888543
No 160
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=37.00 E-value=48 Score=18.89 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=11.7
Q ss_pred Cceechhhhhhcc--CCCCCCCCCCc
Q psy11756 144 GNAFCTACYEGKF--CPKCFGCGKPI 167 (233)
Q Consensus 144 g~~~C~~c~~~~~--~~~C~~C~~~I 167 (233)
|..||..|..+.. ...|+.|..+|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 4555555543321 23566665554
No 161
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=36.71 E-value=6.7 Score=27.55 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.7
Q ss_pred CCCCCCCCCccccEE
Q psy11756 158 PKCFGCGKPITETAI 172 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i 172 (233)
..|.+|+..|.-+.|
T Consensus 20 a~Ck~C~~kI~Kg~l 34 (111)
T 3odc_A 20 STCKGCMEKIEKGQV 34 (111)
T ss_dssp CBCTTTCCBCCTTCE
T ss_pred ccccccCCCccCCce
Confidence 468889888865443
No 162
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.16 E-value=38 Score=20.86 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=15.8
Q ss_pred CCceechhhhhhc--cCCCCCCCCCCccc
Q psy11756 143 EGNAFCTACYEGK--FCPKCFGCGKPITE 169 (233)
Q Consensus 143 ~g~~~C~~c~~~~--~~~~C~~C~~~I~~ 169 (233)
=+..||..|..+. ....|+.|..+|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4566777775432 23467777776643
No 163
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=35.40 E-value=28 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCcCCCCCCCCC-CceEeeCCeeeChhhhhccccC
Q psy11756 184 FRCGRCRRPISG-PTFRVCEADVVCVECSEKGREE 217 (233)
Q Consensus 184 f~C~~C~~~l~~-~~~~~~~~~~~C~~C~~~~~~~ 217 (233)
.+|++|++.-.. ..+..-.|..+|..|-+....-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c~~I 53 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDI 53 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHHHHHH
Confidence 468899987754 3344346679999998766543
No 164
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.17 E-value=20 Score=21.52 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCcCCCCCCCCCCceEeeCCeeeChhhhhccccC
Q psy11756 184 FRCGRCRRPISGPTFRVCEADVVCVECSEKGREE 217 (233)
Q Consensus 184 f~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~~ 217 (233)
+.|..|...+. ......=|+.||..|..++...
T Consensus 21 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQ-KPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHc
Confidence 56777777775 2344456888999999887763
No 165
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=34.31 E-value=43 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCceechhhhhhc--cCCCCCCCCCCcc
Q psy11756 143 EGNAFCTACYEGK--FCPKCFGCGKPIT 168 (233)
Q Consensus 143 ~g~~~C~~c~~~~--~~~~C~~C~~~I~ 168 (233)
=|..||..|..+. ....|+.|...|.
T Consensus 35 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 35 CMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3556666665332 2345777766654
No 166
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.54 E-value=31 Score=22.77 Aligned_cols=58 Identities=10% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCCCCCCCCcc--ccEEEEc---CceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhccccCCCC
Q psy11756 158 PKCFGCGKPIT--ETAIKVH---DRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREEGKN 220 (233)
Q Consensus 158 ~~C~~C~~~I~--~~~i~~~---~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~~~~~ 220 (233)
..|..|+..-. ++.|..- +..||..|.. -+|......+-.|.-+|..|..+.....++
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccchhhhhccc
Confidence 46777776532 2345543 4679998873 223211111236788999998776554443
No 167
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.99 E-value=19 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=10.7
Q ss_pred CCCCcccccccccc
Q psy11756 37 TMYPKCAACQGLIQ 50 (233)
Q Consensus 37 ~~~~~C~~C~~~I~ 50 (233)
.....|+.|...|.
T Consensus 13 ~~i~~C~IC~~~i~ 26 (74)
T 2ct0_A 13 DAVKICNICHSLLI 26 (74)
T ss_dssp SSSCBCSSSCCBCS
T ss_pred CCCCcCcchhhHcc
Confidence 34568999988885
No 168
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.37 E-value=17 Score=28.99 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCCCCCCCCCccccEEEE-cCceecCCCC----------CcCCCCCCCC
Q psy11756 157 CPKCFGCGKPITETAIKV-HDRKWHEACF----------RCGRCRRPIS 194 (233)
Q Consensus 157 ~~~C~~C~~~I~~~~i~~-~~~~~H~~Cf----------~C~~C~~~l~ 194 (233)
.+.|..|...|+.+..-. -+..||..|+ +|..|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 356888888777543322 3567888886 4666655543
No 169
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.88 E-value=69 Score=20.58 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=10.0
Q ss_pred CCCCCcccccccccc
Q psy11756 36 STMYPKCAACQGLIQ 50 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~ 50 (233)
.....+|..|++.|.
T Consensus 22 k~~~nRC~~CrKkvg 36 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVG 36 (74)
T ss_dssp CSCTTBCSSSCCBCG
T ss_pred CCcCCcChhhCCccc
Confidence 334568999988653
No 170
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=30.43 E-value=18 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCCCCCCCCccccEEEEcCceecCCC---------CCcCCCCCCCCCC
Q psy11756 158 PKCFGCGKPITETAIKVHDRKWHEAC---------FRCGRCRRPISGP 196 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~~~~~~~H~~C---------f~C~~C~~~l~~~ 196 (233)
..|..|...+...++..-|..||..| +.|..|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 36888888877766666678898888 3799999888643
No 171
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=30.41 E-value=39 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.695 Sum_probs=14.9
Q ss_pred CcCCCCCCCCCCceEee---CCeeeC-hhhh
Q psy11756 185 RCGRCRRPISGPTFRVC---EADVVC-VECS 211 (233)
Q Consensus 185 ~C~~C~~~l~~~~~~~~---~~~~~C-~~C~ 211 (233)
.|..|+++|..+...+. .-++|| ..|.
T Consensus 22 ~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 22 TCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp BCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred ChhhccchhhcCceeeeecCchhheechHHH
Confidence 47778888844444443 234555 3444
No 172
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=28.91 E-value=78 Score=19.54 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCCCccccEEEEcC-----ceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhcc
Q psy11756 163 CGKPITETAIKVHD-----RKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKG 214 (233)
Q Consensus 163 C~~~I~~~~i~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~ 214 (233)
|+.+...+.|+.-+ ..||..|.. -.-....-.......||..|...+
T Consensus 15 C~~~~~~g~mI~CD~~~C~~W~H~~Cvg-----i~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 15 CSSTMVNDSMIQCEDQRCQVWQHLNCVL-----IPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp TCCCSCCSCEEECSCTTTCEEEETTTSC-----CCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCCcCCCCEEEECCCCCCCeEchhhCC-----CCcccccccCCCCcEECcCccCcc
Confidence 55665555566544 368988761 111111112223468999997654
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.48 E-value=34 Score=27.10 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=34.2
Q ss_pred cCcCCCccCCCCCCCCCCceeeeCCccccccccccc---cCCCCCCCCcccc
Q psy11756 61 WHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASL---FLNKCQGCRLPIK 109 (233)
Q Consensus 61 ~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~---~~~~C~~C~~~i~ 109 (233)
--+.-|.|..|...+.+ ......|..||..|..+. ....|+.|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44678899999887764 455668899999986542 2334888888774
No 174
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.37 E-value=62 Score=20.79 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCCCCCCCccccEEEEc---CceecCCCCCcCCCCCCCCCCceEeeCC-eeeChhhh
Q psy11756 159 KCFGCGKPITETAIKVH---DRKWHEACFRCGRCRRPISGPTFRVCEA-DVVCVECS 211 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~---~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~C~ 211 (233)
.|..|++.-.++.|..- +..||..|.. -+|... -.| .-+|..|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~----P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-----PPLDKV----PEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS-----SCCSSC----CCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC-----CCccCC----CCCCCcCCcCcc
Confidence 46677765545555543 3579988873 223211 134 67787774
No 175
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=28.12 E-value=11 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.656 Sum_probs=18.0
Q ss_pred CCCCCCCCCccccEEEEc---------C---ceecCCCCC
Q psy11756 158 PKCFGCGKPITETAIKVH---------D---RKWHEACFR 185 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~~~---------~---~~~H~~Cf~ 185 (233)
..|..|+..|.-+.|+++ | ..||..||.
T Consensus 39 A~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 39 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp CBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred ccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 478899999965554432 1 247777774
No 176
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=27.36 E-value=60 Score=20.65 Aligned_cols=42 Identities=17% Similarity=0.510 Sum_probs=26.7
Q ss_pred CCCCCCcccccCceeccCCce-echhhhhhccCCCCCCCCCCcccc
Q psy11756 126 VCISCGTKLLYKGFYEREGNA-FCTACYEGKFCPKCFGCGKPITET 170 (233)
Q Consensus 126 ~C~~C~~~l~~~~~~~~~g~~-~C~~c~~~~~~~~C~~C~~~I~~~ 170 (233)
.|..|...+.. ..+..=|.. +|..|.... ..|+.|..+|...
T Consensus 20 ~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 20 LCMVCCEEEIN-STFCPCGHTVCCESCAAQL--QSCPVCRSRVEHV 62 (79)
T ss_dssp BCTTTSSSBCC-EEEETTCBCCBCHHHHTTC--SBCTTTCCBCCEE
T ss_pred EeEEeCcccCc-EEEECCCCHHHHHHHHHhc--CcCCCCCchhhCe
Confidence 45556544432 233345666 888887655 4899999888764
No 177
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=27.27 E-value=9.1 Score=27.07 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=10.5
Q ss_pred CCCCCCCCccccEEE
Q psy11756 159 KCFGCGKPITETAIK 173 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~ 173 (233)
.|.+|+..|.-+.|+
T Consensus 17 ~Ck~C~~kI~KgeLR 31 (117)
T 1uw0_A 17 GCKKCKEKIVKGVCR 31 (117)
T ss_dssp ECTTSSCEECTTCEE
T ss_pred cchhhCcccCCCCeE
Confidence 688899888655433
No 178
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.19 E-value=48 Score=22.48 Aligned_cols=34 Identities=26% Similarity=0.708 Sum_probs=16.8
Q ss_pred ecCCCCCcCCCCC-CCCCCceEee--CCeeeChhhhhc
Q psy11756 179 WHEACFRCGRCRR-PISGPTFRVC--EADVVCVECSEK 213 (233)
Q Consensus 179 ~H~~Cf~C~~C~~-~l~~~~~~~~--~~~~~C~~C~~~ 213 (233)
+|+. +.|..|++ +|.|.+|.-. .+--+|..|+..
T Consensus 28 ~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 28 KHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp SCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred ccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 4433 44555554 3444444443 234566666544
No 179
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.85 E-value=12 Score=27.56 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=30.3
Q ss_pred CCCCCCCCCcccccCceeccCCceechhhhhhccCCCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCC
Q psy11756 123 DHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI 193 (233)
Q Consensus 123 ~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~~~~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l 193 (233)
.-+.|..|++.++.. ..|..|......-.|..|+.. . ....+|| |-.|..|..-.
T Consensus 57 ~~vlCg~C~~~q~~~--------~~C~~Cg~~f~~Y~C~~C~l~-d-----~~k~~yH--C~~CgiCR~G~ 111 (143)
T 2dkt_A 57 KEVQCINCEKLQHAQ--------QTCEDCSTLFGEYYCSICHLF-D-----KDKRQYH--CESCGICRIGP 111 (143)
T ss_dssp CCEEESSSCCEECSC--------SBCSSSCCBSCSEECSSSCCE-E-----CSSSEEE--ETTTTEEEESC
T ss_pred ceeeecccCcccccc--------CcCCCCCccceeeEeceeecc-c-----CCCceec--CCCCCceeccC
Confidence 345677777665421 145555433333356666543 1 2356688 66777776654
No 180
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.85 E-value=19 Score=20.48 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=12.6
Q ss_pred CCCCCccccccccccc
Q psy11756 36 STMYPKCAACQGLIQN 51 (233)
Q Consensus 36 ~~~~~~C~~C~~~I~~ 51 (233)
.....+|.+|+++|.-
T Consensus 14 ~~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 14 PIQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCCEEECTTTCCEEET
T ss_pred cccchhhcccCCcchH
Confidence 4556799999999854
No 181
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.84 E-value=60 Score=26.36 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=30.1
Q ss_pred CCCCCCCCCcccccCceec-cCCceechhhhhhccC----CCCCC--CCCCcccc
Q psy11756 123 DHFVCISCGTKLLYKGFYE-REGNAFCTACYEGKFC----PKCFG--CGKPITET 170 (233)
Q Consensus 123 ~Cf~C~~C~~~l~~~~~~~-~~g~~~C~~c~~~~~~----~~C~~--C~~~I~~~ 170 (233)
.=|+|..|...+.. +... .=|+.||..|..+... ..|+. |.+.+...
T Consensus 180 ~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 34778888887754 3443 5688999988755442 24666 66665443
No 182
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.79 E-value=26 Score=20.42 Aligned_cols=14 Identities=29% Similarity=1.006 Sum_probs=7.1
Q ss_pred CcCCCCCCCCCCce
Q psy11756 185 RCGRCRRPISGPTF 198 (233)
Q Consensus 185 ~C~~C~~~l~~~~~ 198 (233)
+|.+|++.++..+.
T Consensus 5 ~C~rCg~~fs~~el 18 (48)
T 4ayb_P 5 RCGKCWKTFTDEQL 18 (48)
T ss_dssp CCCCTTTTCCCCCS
T ss_pred EeeccCCCccHHHH
Confidence 45555555544333
No 183
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.67 E-value=14 Score=23.24 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=11.2
Q ss_pred eCCcccccccccccc
Q psy11756 83 HAGSPYCVEDYASLF 97 (233)
Q Consensus 83 ~~~~~yC~~c~~~~~ 97 (233)
=++.+||..||.+..
T Consensus 25 CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 25 CDGDLYCARCFREGH 39 (67)
T ss_dssp TTSEEECSSHHHHHT
T ss_pred CCCceehHHHHHHHc
Confidence 356789999987754
No 184
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=73 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCccccccccccc--cEeeecC-----CCcCcCCC----------ccCCCCCCCC
Q psy11756 37 TMYPKCAACQGLIQN--IIVQALD-----KTWHPEHF----------RCTHCRIPIA 76 (233)
Q Consensus 37 ~~~~~C~~C~~~I~~--~~~~~~~-----~~~H~~Cf----------~C~~C~~~l~ 76 (233)
.....|..|...... .++.--+ ..+|..|+ .|..|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 334689999776542 3322111 56677774 4666655553
No 185
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.93 E-value=51 Score=21.70 Aligned_cols=35 Identities=20% Similarity=0.687 Sum_probs=25.3
Q ss_pred CCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEe
Q psy11756 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRV 200 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 200 (233)
..|+.|++. ...+..-.+|| |..|++.+.|+.|..
T Consensus 36 y~CpfCGk~---~vkR~a~GIW~-----C~kCg~~~AGGAy~~ 70 (83)
T 3j21_i 36 HTCPVCGRK---AVKRISTGIWQ-----CQKCGATFAGGAYLP 70 (83)
T ss_dssp BCCSSSCSS---CEEEEETTEEE-----ETTTCCEEECCSSSS
T ss_pred cCCCCCCCc---eeEecCcCeEE-----cCCCCCEEeCCcccc
Confidence 478889876 23344567786 889999998887764
No 186
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=24.02 E-value=36 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCCCCCCCccccEEEEcCceecCCCC
Q psy11756 159 KCFGCGKPITETAIKVHDRKWHEACF 184 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~~~~~H~~Cf 184 (233)
.|..|...+...+...-|..|+..|+
T Consensus 33 ~C~IC~~~~~~pv~~~CgH~FC~~Ci 58 (141)
T 3knv_A 33 LCSACRNVLRRPFQAQCGHRYCSFCL 58 (141)
T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHH
T ss_pred CCCCCChhhcCcEECCCCCccCHHHH
Confidence 56667666655544445566666554
No 187
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=23.75 E-value=43 Score=21.11 Aligned_cols=49 Identities=24% Similarity=0.429 Sum_probs=25.9
Q ss_pred CCCCCCCCccccEEEEc---CceecCCCCCcCCCCCCCCCCceEeeCCeeeChhhhhcccc
Q psy11756 159 KCFGCGKPITETAIKVH---DRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGRE 216 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~---~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~C~~~~~~ 216 (233)
.|..|+++-.+..+..- +..||..|.. -.+.. ..++..||..|..+...
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-----~~~~~----~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAAP----PEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHT-----CSSCC----CSSSCCCCTTTHHHHCS
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCC-----CCccC----CCCCCEEChhccCchhh
Confidence 34555555443334432 3568877752 11111 12467899999877543
No 188
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=23.25 E-value=45 Score=18.07 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=11.8
Q ss_pred CCCCCCCCccccEEEEcCceecCCCCCc
Q psy11756 159 KCFGCGKPITETAIKVHDRKWHEACFRC 186 (233)
Q Consensus 159 ~C~~C~~~I~~~~i~~~~~~~H~~Cf~C 186 (233)
.|..|+.|=+ .|...++.|...|-.|
T Consensus 2 lC~~C~~peT--~l~~~~~~~~l~C~aC 27 (36)
T 1k81_A 2 ICRECGKPDT--KIIKEGRVHLLKCMAC 27 (36)
T ss_dssp CCSSSCSCEE--EEEEETTEEEEEEETT
T ss_pred CCcCCCCCCc--EEEEeCCcEEEEhhcC
Confidence 4566665522 2333445555444433
No 189
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=22.45 E-value=53 Score=19.84 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=23.9
Q ss_pred CCcCCCCCCCCCCceEe-eCCeeeChhhhhccccC
Q psy11756 184 FRCGRCRRPISGPTFRV-CEADVVCVECSEKGREE 217 (233)
Q Consensus 184 f~C~~C~~~l~~~~~~~-~~~~~~C~~C~~~~~~~ 217 (233)
|.|..+...+. +.... .+|..|++.+-+++...
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~ 37 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKD 37 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHH
T ss_pred EEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHh
Confidence 66777777775 45555 58888888888877754
No 190
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.04 E-value=69 Score=19.71 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=13.3
Q ss_pred ccccccccccCCCCCCCCcccccc
Q psy11756 88 YCVEDYASLFLNKCQGCRLPIKDV 111 (233)
Q Consensus 88 yC~~c~~~~~~~~C~~C~~~i~~~ 111 (233)
+|..|... ...|..|+.+|...
T Consensus 38 ~C~~C~~~--~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 38 LCDGCVKY--FQQCPMCRQFVQES 59 (68)
T ss_dssp SCTTHHHH--CSSCTTTCCCCCCE
T ss_pred hhHHHHhc--CCCCCCCCcchhce
Confidence 55555543 25677777777553
No 191
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.97 E-value=17 Score=26.38 Aligned_cols=28 Identities=32% Similarity=0.776 Sum_probs=17.8
Q ss_pred CCCCCCCCCccccEEE-----Ec------C---ceecCCCCC
Q psy11756 158 PKCFGCGKPITETAIK-----VH------D---RKWHEACFR 185 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~-----~~------~---~~~H~~Cf~ 185 (233)
..|..|+..|.-+.|+ .. + ..||..||.
T Consensus 28 A~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 28 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp CBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred ccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 4788999999543322 11 2 258888885
No 192
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=21.92 E-value=62 Score=21.74 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCCCCCCCCccccEEEEcCceecCCCCCcCCCCCCCCCCceEe
Q psy11756 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRV 200 (233)
Q Consensus 158 ~~C~~C~~~I~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 200 (233)
..|+.|++. ..-...-.+|| |..|++.+.|+.|..
T Consensus 37 y~CpfCgk~---~vkR~a~GIW~-----C~~Cg~~~AGGAy~~ 71 (92)
T 3iz5_m 37 YFCEFCGKF---AVKRKAVGIWG-----CKDCGKVKAGGAYTM 71 (92)
T ss_dssp BCCTTTCSS---CBEEEETTEEE-----CSSSCCEEECCSSSS
T ss_pred ccCcccCCC---eeEecCcceEE-----cCCCCCEEeCCcccC
Confidence 368888876 23334467786 888999998887764
No 193
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.35 E-value=16 Score=29.27 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=13.9
Q ss_pred CcCCCCCCCCCCceEee---CCeeeChhhhhcccc
Q psy11756 185 RCGRCRRPISGPTFRVC---EADVVCVECSEKGRE 216 (233)
Q Consensus 185 ~C~~C~~~l~~~~~~~~---~~~~~C~~C~~~~~~ 216 (233)
+|..|+..|+...+... +.-++|..|..=++-
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 44444444443333322 333555555544443
No 194
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.56 E-value=45 Score=21.83 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=27.2
Q ss_pred CCCCCCCcccccCceec--cCCceechhhhhhcc----------CCCCCC--CCCC
Q psy11756 125 FVCISCGTKLLYKGFYE--REGNAFCTACYEGKF----------CPKCFG--CGKP 166 (233)
Q Consensus 125 f~C~~C~~~l~~~~~~~--~~g~~~C~~c~~~~~----------~~~C~~--C~~~ 166 (233)
+.|..|-..+.....+. .=|+.||..|..+.. ..+|+. |...
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 56788877665444432 368899999974432 236777 7776
No 195
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=20.11 E-value=81 Score=21.48 Aligned_cols=57 Identities=14% Similarity=0.383 Sum_probs=32.8
Q ss_pred CCCCCCCCCccc-cEEEEc----CceecCCCCCcCCCCCCCCCCceEe----eCCeeeChhhhhccccCCCCC
Q psy11756 158 PKCFGCGKPITE-TAIKVH----DRKWHEACFRCGRCRRPISGPTFRV----CEADVVCVECSEKGREEGKND 221 (233)
Q Consensus 158 ~~C~~C~~~I~~-~~i~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~----~~~~~~C~~C~~~~~~~~~~~ 221 (233)
..|..|.++..+ ..+..- +..||..|. .|+...+.. .++..+|..|..+....+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~~ 69 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMTESAYGLLTTEASAVWACDLCLKTKEGSGSGS 69 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCCHHHHHHHHHCTTEEECCHHHHHTTTTC----
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC-------CcCHHHHHhhccCCCCCEECccccCcCCCCCCCC
Confidence 368999999743 234433 456998774 243222221 246899999998765544433
Done!