RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11756
(233 letters)
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 141 bits (356), Expect = 2e-42
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 34 AASTMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED 92
++ P CA C I + I++ALD+ WH + +C+ C +P+A ++ S YC +D
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCKDD 59
Query: 93 YASLFLNKCQGCR--LPIKDVVVTALNQTWHPDHFVCISCGTKLLY--KGFYEREGNAFC 148
+ F KC C+ +P VV A + +H F C+ C +L + + + C
Sbjct: 60 FFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC 119
Query: 149 TACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGP 196
A YE G G T + + H+ + P
Sbjct: 120 KADYETAKQGGSGGSGGSGGGTPMVAASPERHDGGLQANPVEVQSYQP 167
Score = 45.6 bits (108), Expect = 2e-06
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 158 PKCFGCGKPITE-TAIKVHDRKWHEACFRCGRCRRPISGPTF 198
P C GC + I + +K DR WH C +C C P++ F
Sbjct: 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF 48
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 124 bits (313), Expect = 1e-36
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 40 PKCAACQGLI-QNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
P+CA C LI N QA ++ WH +HF C C +A + + + P C Y
Sbjct: 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA 63
Query: 99 NKCQGCRLPI--KDVVVTALNQTWHP--DHFVCISCGTKLLYKGFYEREGNAFCTACYEG 154
CQGC I + VT N +WH + F+C C L+ + F EG FC+ +
Sbjct: 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123
Query: 155 KF 156
+
Sbjct: 124 RM 125
Score = 105 bits (264), Expect = 2e-29
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 100 KCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
+C GC I A NQ WH HF C C + L + + C CY
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 159 KCFGCGKPITETAIKV--HDRKWHEA--CFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
C GC I +V ++ WH + CF C C + + G F E V C +K
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123
Score = 52.0 bits (125), Expect = 4e-09
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 158 PKCFGCGKPITE-TAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
P+C GC + I + ++ WH F C C ++G + + VC C K
Sbjct: 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 60
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 118 bits (296), Expect = 2e-33
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 6/159 (3%)
Query: 63 PEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKD-VVVTALNQTWH 121
A GS + + + C GC I D ++ AL++ WH
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWH 84
Query: 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPI--TETAIKVHDRKW 179
C C L + + R + +C + +F KC C I T+ + D +
Sbjct: 85 SKCLKCSDCH-VPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVY 143
Query: 180 HEACFRCGRCRRPIS-GPTFRVCE-ADVVCVECSEKGRE 216
H CF C C+R ++ G F + E + +VC E ++
Sbjct: 144 HLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 182
Score = 107 bits (269), Expect = 2e-29
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 4 FSRSPAPSPLLGQGDETDVDVSEALDPPPNAASTMYPKCAACQGLIQN-IIVQALDKTWH 62
+R G + + + + + P CA C I + I++ALD+ WH
Sbjct: 28 ITRLENTQFDAANGIDDEGG---SGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWH 84
Query: 63 PEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCR--LPIKDVVVTALNQTW 120
+ +C+ C +P+A + F S YC +D+ F KC C+ +P VV A + +
Sbjct: 85 SKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVY 143
Query: 121 HPDHFVCISCGTKLLY--KGFYEREGNAFCTACYE 153
H F C+ C +L + + + C A YE
Sbjct: 144 HLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 112 bits (282), Expect = 3e-31
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 9/167 (5%)
Query: 35 ASTMYPKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIA--TQKFHVHAGSPYCVE 91
S + +CA C G I ++ A+D WH +C+ C+ + + +G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 92 DYASLFLN--KCQGCRLPI--KDVVVTALNQTWHPDHFVCISCGTKLLY-KGFYEREGNA 146
DY LF N C C I ++V+ A +H F C +C +L+ F+ G+
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 147 FCTACYEGKFCPKCFGCGKPITETAIKVH-DRKWHEACFRCGRCRRP 192
FC G
Sbjct: 121 FCEHDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDED 167
Score = 101 bits (253), Expect = 5e-27
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 94 ASLFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKG--FYEREGNAFCTA 150
SL +C GC I D ++ A++ WH C SC +L G Y + G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 151 CYEGKF--CPKCFGCGKPI--TETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADV 205
Y F C CG+ I +E ++ +H CF C CR + G F +
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 206 VCVECSEKGREEG 218
C G
Sbjct: 121 FCEHDRPTALING 133
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 109 bits (274), Expect = 4e-30
Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 40 PKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
KC CQ + VQ ++H F C C+ + + VH YC Y +
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67
Query: 99 NKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
K +G + S G K + +
Sbjct: 68 PKGKGKGMGA-----------GTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD 116
Query: 159 KCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C CG+ + + + WH++CFRC +C + + T + ++ C C
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGC 169
Score = 83.1 bits (205), Expect = 6e-20
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 59 KTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKD-VVVTALN 117
+ I + H + C C + V
Sbjct: 76 GAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAG 135
Query: 118 QTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGK 165
++WH F C CG L +++G +C CY F PK FG G+
Sbjct: 136 KSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183
Score = 67.3 bits (164), Expect = 5e-14
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 4/118 (3%)
Query: 99 NKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFC 157
KC C+ + V ++H F+C+ C L +C +CY K+
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67
Query: 158 PKCFGCGKPI--TETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
PK G G T +E S +V +D C C +
Sbjct: 68 PKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD-GCPRCGQA 124
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 106 bits (266), Expect = 1e-29
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 40 PKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYASL 96
C CQ I + ++A+D+ WH + C C + ++ + G C DY L
Sbjct: 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 62
Query: 97 FLNK--CQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLY-KGFYEREGNAFCTAC 151
F C C I+ ++ + ++ +H + F C +C + + C
Sbjct: 63 FGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Query: 152 YE 153
Sbjct: 123 IY 124
Score = 102 bits (257), Expect = 3e-28
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 98 LNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKG--FYEREGNAFCTACYEG 154
L C GC+ I D + A++Q WH D C CG +L G Y + G C Y
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 155 KFCPK--CFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPIS-GPTFRVCEADVVCVE 209
F C C K I E ++V D+ +H CF+C C++ G + + +D+VC +
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 121
Query: 210 CSEKGRE 216
+ +
Sbjct: 122 DIYEWTK 128
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 103 bits (259), Expect = 7e-29
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 35 ASTMYPKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED 92
S+ C C+ I + V ++ WH FRC C P+A + F C +
Sbjct: 1 GSSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKC 60
Query: 93 YASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCG 131
KC+GC I D V WH D F S G
Sbjct: 61 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101
Score = 99.8 bits (249), Expect = 2e-27
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 94 ASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
S + C CR PI V N+ WH F C C L + F ++ C C
Sbjct: 1 GSSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKC 60
Query: 152 YEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRC 189
+ PKC GC K I + ++ WH+ CF
Sbjct: 61 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 51.6 bits (124), Expect = 3e-09
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 155 KFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C KPI + +R WH+ CFRC +C P++ TF + ++C +C
Sbjct: 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKC 60
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 91.6 bits (228), Expect = 2e-24
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREG 144
S +D+ ++F KC GC P+ + ++A++ WHP+ FVC C T F+E +G
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Query: 145 NAFCTACYEGKFCPKC 160
FC Y +
Sbjct: 62 RPFCELHYHHRRGSGP 77
Score = 74.7 bits (184), Expect = 5e-18
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLN 99
PKC C + + A+D WHPE F C C +T F G P+C Y +
Sbjct: 16 PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGS 75
Query: 100 KC 101
Sbjct: 76 GP 77
Score = 70.8 bits (174), Expect = 2e-16
Identities = 19/70 (27%), Positives = 26/70 (37%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEA 203
+ + F PKC GC +P+ E + D WH CF CG C S +F +
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Query: 204 DVVCVECSEK 213
C
Sbjct: 62 RPFCELHYHH 71
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 88.9 bits (221), Expect = 2e-23
Identities = 21/76 (27%), Positives = 31/76 (40%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREG 144
S Y + F +C C + VT +Q WH + VC C T L + F R+
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDE 61
Query: 145 NAFCTACYEGKFCPKC 160
+ +C AC+ F
Sbjct: 62 DPYCVACFGELFASGP 77
Score = 78.1 bits (193), Expect = 3e-19
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLN 99
P+CA C + V D+ WH E CT C+ P+A Q+F PYCV + LF +
Sbjct: 16 PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
Query: 100 KC 101
Sbjct: 76 GP 77
Score = 70.1 bits (172), Expect = 3e-16
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEA 203
+ CYE KF P+C C K +T+ + D+ WH C C C+ P++G F +
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDE 61
Query: 204 DVVCVEC 210
D CV C
Sbjct: 62 DPYCVAC 68
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 84.4 bits (209), Expect = 1e-21
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 80 FHVHAGSPYCVEDY-ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKG 138
E A C C I+ + AL ++WHP+ F C C + Y G
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIG 65
Query: 139 FYEREGNAFCTACYEGKFCPKC 160
F E +G +C CYE F
Sbjct: 66 FVEEKGALYCELCYEKFFASGP 87
Score = 76.7 bits (189), Expect = 1e-18
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 34 AASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDY 93
A P CA C +I+ + AL K+WHPE F C HC+ +A F G+ YC Y
Sbjct: 20 PAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79
Query: 94 ASLFLNKC 101
F +
Sbjct: 80 EKFFASGP 87
Score = 62.5 bits (152), Expect = 3e-13
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 139 FYEREGNAFCTACY-EGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPT 197
+++ GK P C C + I + + WH F C C+ ++
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIG 65
Query: 198 FRVCEADVVCVECSEK 213
F + + C C EK
Sbjct: 66 FVEEKGALYCELCYEK 81
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 84.0 bits (208), Expect = 2e-21
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYER 142
S + KC+GC I D V WH D F C +C + F+ +
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 143 EGNAFCTACYEGKFCPKC 160
+ +C C+E KF
Sbjct: 62 GEDFYCVTCHETKFASGP 79
Score = 69.7 bits (171), Expect = 5e-16
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 40 PKCAACQGLIQNI--IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
PKC C I V+ WH + F C++C+ I T F YCV + + F
Sbjct: 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75
Query: 98 LNKC 101
+
Sbjct: 76 ASGP 79
Score = 66.6 bits (163), Expect = 6e-15
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVC 201
+ C + PKC GC K I + ++ WH+ CF C C++ I +F
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 202 EADVVCVECSEK 213
D CV C E
Sbjct: 62 GEDFYCVTCHET 73
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 80.1 bits (198), Expect = 4e-20
Identities = 21/69 (30%), Positives = 29/69 (42%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
S + C C I +T +Q WH D FVC++C KL + F E +C CY+
Sbjct: 1 GSSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60
Query: 154 GKFCPKCFG 162
G
Sbjct: 61 NFVSGPSSG 69
Score = 79.0 bits (195), Expect = 1e-19
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S+ C C I + + D+ WH + F C C +A Q+F YCV+ Y
Sbjct: 1 GSSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60
Query: 95 SLFLNKCQG 103
+ G
Sbjct: 61 NFVSGPSSG 69
Score = 58.6 bits (142), Expect = 5e-12
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 155 KFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C K IT I D+ WH CF C C + ++G F E CV+C
Sbjct: 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDC 58
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 78.6 bits (194), Expect = 2e-19
Identities = 19/71 (26%), Positives = 27/71 (38%)
Query: 92 DYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
+ L C C I V V ++ HP+ +VC CGT L KG + E +C
Sbjct: 9 IGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKH 68
Query: 152 YEGKFCPKCFG 162
+ G
Sbjct: 69 ARERVSGPSSG 79
Score = 71.7 bits (176), Expect = 8e-17
Identities = 15/74 (20%), Positives = 23/74 (31%)
Query: 30 PPPNAASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
+ P C C I + V+ D+ HPE + CT C + + YC
Sbjct: 6 SGSIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYC 65
Query: 90 VEDYASLFLNKCQG 103
+ G
Sbjct: 66 EKHARERVSGPSSG 79
Score = 58.2 bits (141), Expect = 1e-11
Identities = 14/61 (22%), Positives = 22/61 (36%)
Query: 150 ACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVE 209
+ + P C CG I +K+ DR H C+ C C + E + C +
Sbjct: 8 SIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEK 67
Query: 210 C 210
Sbjct: 68 H 68
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 78.1 bits (193), Expect = 2e-19
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
S+ + C CR PI+ VV A+ + WH +HFVC C L YER+G A+C Y
Sbjct: 1 GSMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60
Query: 154 GKF 156
F
Sbjct: 61 QLF 63
Score = 76.9 bits (190), Expect = 6e-19
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S P C AC+ I+ +V A+ K WH EHF C C P + + G YC Y
Sbjct: 1 GSMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60
Query: 95 SLF 97
LF
Sbjct: 61 QLF 63
Score = 58.5 bits (142), Expect = 5e-12
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 154 GKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
P C C +PI + ++WH F C +C +P G + C
Sbjct: 2 SMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETH 58
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 78.2 bits (193), Expect = 2e-19
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
S + C C+ PI VT Q WH + FVC +C +L + F R+ A+C C+
Sbjct: 1 GSSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFC 60
Query: 154 GKFCPKC 160
+
Sbjct: 61 DLYASGP 67
Score = 77.8 bits (192), Expect = 3e-19
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S+ C C+ I V ++ WH E F CT CR ++ Q+F YC+ +
Sbjct: 1 GSSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFC 60
Query: 95 SLFLNKC 101
L+ +
Sbjct: 61 DLYASGP 67
Score = 58.9 bits (143), Expect = 4e-12
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 155 KFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C KPIT + ++ WH+ CF C CR+ +SG F + C+ C
Sbjct: 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNC 58
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 78.2 bits (193), Expect = 3e-19
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFY-ERE 143
S E L KC C PI D ++ A+ + +HP F C+ C L F +
Sbjct: 2 SSGSSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDAT 61
Query: 144 GNAFCTACYEGKFCPKC 160
C + KF
Sbjct: 62 SQIHCIEDFHRKFASGP 78
Score = 73.6 bits (181), Expect = 2e-17
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHV-HAGSPYCVEDYASLFL 98
KCA C I + I++A+ K +HP F C C + F V +C+ED+ F
Sbjct: 16 EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75
Query: 99 NKC 101
+
Sbjct: 76 SGP 78
Score = 57.4 bits (139), Expect = 2e-11
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVV-CVE 209
CY KC C +PI + ++ + +H CF C C R + G F V + C+E
Sbjct: 10 CYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIE 68
Query: 210 C 210
Sbjct: 69 D 69
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 78.3 bits (193), Expect = 4e-19
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 30 PPPNAASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYC 89
++ P C C I +V+A DK HPE F C C + + + + G YC
Sbjct: 16 HGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC 75
Query: 90 VEDYASLFLNKCQG 103
+ G
Sbjct: 76 ETHARARTSGPSSG 89
Score = 77.1 bits (190), Expect = 9e-19
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 100 KCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
C C I VV A ++ HP+ FVC C L KG++ EG +C +
Sbjct: 27 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGP 86
Query: 160 CFG 162
G
Sbjct: 87 SSG 89
Score = 56.0 bits (135), Expect = 7e-11
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 149 TACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCV 208
+ P C CG I +K D+ H CF C C + + E ++ C
Sbjct: 17 GGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCE 76
Query: 209 EC 210
Sbjct: 77 TH 78
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 77.1 bits (190), Expect = 8e-19
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYER 142
S Y + F N C C+ I + ++ +H F C C L + F +
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 143 EGNAFCTACYEGKFCPKC 160
+ C CY F
Sbjct: 62 DSELLCNDCYCSAFSSGP 79
Score = 65.6 bits (160), Expect = 2e-14
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVC 201
+ CY+ F C C + I + DR +HE CFRC RC+R ++ F
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 202 EADVVCVECSEK 213
+++++C +C
Sbjct: 62 DSELLCNDCYCS 73
Score = 60.6 bits (147), Expect = 1e-12
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 40 PKCAACQGLIQN--IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
CA CQ LI + + D+ +H FRC C+ +A + F C + Y S F
Sbjct: 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75
Query: 98 LNKC 101
+
Sbjct: 76 SSGP 79
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 76.4 bits (188), Expect = 1e-18
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIK-----DVVVTALNQTWHPDHFVCISCGTKLLYKGF 139
S + Y + KC GC+ PI VV Q+WH F C C L K F
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 140 YEREGNAFCTACYE 153
+ +C C +
Sbjct: 62 VFHQEQVYCPDCAK 75
Score = 69.0 bits (169), Expect = 8e-16
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPIT-----ETAIKVHDRKWHEACFRCGRCRRPISGPTF 198
+ CY+ KC GC PIT + + + WH+ CF C +C ++ F
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 199 RVCEADVVCVECSEK 213
+ V C +C++K
Sbjct: 62 VFHQEQVYCPDCAKK 76
Score = 58.3 bits (141), Expect = 8e-12
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 40 PKCAACQGLIQNI-----IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
KCA C+ I +V ++WH F C C + +A ++F H YC +
Sbjct: 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75
Query: 95 SL 96
L
Sbjct: 76 KL 77
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 76.2 bits (187), Expect = 5e-18
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 16/123 (13%)
Query: 35 ASTMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIA--TQKFHVHAGSPYCVE 91
S + +CA C G I + ++ A+D WH +C+ C+ + + +G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 92 DYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKG-FYEREGNAFCTA 150
DY LF N G + G L G F + +
Sbjct: 61 DYIRLFGNSGAGGSGGH------------MGSGGDVMVVGEPTLMGGEFGDEDERLITRL 108
Query: 151 CYE 153
Sbjct: 109 ENT 111
Score = 73.5 bits (180), Expect = 5e-17
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 94 ASLFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKG--FYEREGNAFCTA 150
SL +C GC I D ++ A++ WH C SC +L G Y + G C
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 151 CYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
Y F G + G G F + ++
Sbjct: 61 DYIRLFGNSGAGGSGGHMGS---------GGDVMVVGEPTLM--GGEFGDEDERLITRLE 109
Query: 211 SEK 213
+ +
Sbjct: 110 NTQ 112
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 73.2 bits (180), Expect = 2e-17
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYA 94
S+ C C I +++A++ +WHPE FRC C+ +A F +AG C +
Sbjct: 1 GSSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHN 60
Query: 95 SLFLNKC 101
+
Sbjct: 61 REKASGP 67
Score = 70.9 bits (174), Expect = 1e-16
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYE 153
S + C C I V+ A+N +WHP+ F C C L GF + G C C+
Sbjct: 1 GSSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHN 60
Query: 154 GKF--CPKC 160
+ P
Sbjct: 61 REKASGPSS 69
Score = 57.1 bits (138), Expect = 2e-11
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
C CG+ I IK + WH CFRC C+ ++ F +C C +
Sbjct: 6 SGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 72.5 bits (178), Expect = 3e-17
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 94 ASLFLNKCQGCRLPIKDV----VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT 149
S + C GC PI + ++ + WH D F C C L+ +GF + C
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP 60
Query: 150 ACYEGKFCPKC 160
C + P
Sbjct: 61 DCGKDISGPSS 71
Score = 61.4 bits (149), Expect = 5e-13
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 35 ASTMYPKCAACQ----GLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCV 90
S+ CA C GL + ++ WH + F C C + + + F C
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP 60
Query: 91 EDYASLF 97
+ +
Sbjct: 61 DCGKDIS 67
Score = 57.1 bits (138), Expect = 2e-11
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 155 KFCPKCFGCGKPIT----ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C GC PI+ I +R+WH CF C +C + G F D++C +C
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
Query: 211 SEK 213
+
Sbjct: 63 GKD 65
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 72.0 bits (177), Expect = 5e-17
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 35 ASTMYPKCAACQGLIQNI--IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED 92
S+ C+AC + ++ +TWH F C+ C P+ ++ F G+ YCV
Sbjct: 1 GSSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPC 60
Query: 93 YASLFLNKC 101
Y + F +
Sbjct: 61 YENKFASGP 69
Score = 70.9 bits (174), Expect = 1e-16
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 94 ASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
S + C C + + QTWH F+C C L + F +G +C C
Sbjct: 1 GSSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPC 60
Query: 152 YEGKFCPKC 160
YE KF
Sbjct: 61 YENKFASGP 69
Score = 56.2 bits (136), Expect = 4e-11
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 155 KFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSE 212
C CG+ + ++ + WHE CF C C +P+ +F + CV C E
Sbjct: 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYE 62
Query: 213 K 213
Sbjct: 63 N 63
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 71.7 bits (176), Expect = 5e-17
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 35 ASTMYPKCAACQGLI--QNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED 92
S+ C C + V ALD+ +H F C+ CR + Q F+ YC
Sbjct: 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGC 60
Query: 93 YASLFLNKCQGC 104
Y +
Sbjct: 61 YVATL-ESGPSS 71
Score = 70.2 bits (172), Expect = 2e-16
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 94 ASLFLNKCQGCRLPI--KDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
S + C GC + V AL++ +H FVC +C +L + FY E A+C C
Sbjct: 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGC 60
Query: 152 YEGKFCPKCFGCG 164
Y G
Sbjct: 61 YVATLE-SGPSSG 72
Score = 51.7 bits (124), Expect = 2e-09
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 158 PKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C GCG+ + + DR +H CF C CR + G F E C C
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGC 60
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 71.7 bits (176), Expect = 8e-17
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 85 GSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFY--ER 142
S +DY F C GC L + + A +HP+ F C+SC + Y +
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQ 61
Query: 143 EGNAFCTACYEGKFCPKCFG 162
+C C+ G
Sbjct: 62 HATLYCGKCHNEVVSGPSSG 81
Score = 62.1 bits (151), Expect = 3e-13
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQK--FHVHAGSPYCVEDYASLF 97
C C L+ + A + +HPE F C C++ I V + YC + + +
Sbjct: 16 EFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75
Query: 98 LNKCQG 103
G
Sbjct: 76 SGPSSG 81
Score = 62.1 bits (151), Expect = 3e-13
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 144 GNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPIS--GPTFRVC 201
+ Y GKF C GC +T + + K+H CF C C+ I V
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQ 61
Query: 202 EADVVCVECSEK 213
A + C +C +
Sbjct: 62 HATLYCGKCHNE 73
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 71.3 bits (175), Expect = 9e-17
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 94 ASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTAC 151
S + CQ C+ I + +WH F+C C + K F ++ FC C
Sbjct: 1 GSSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPC 60
Query: 152 YEGKFCPKC 160
YE +
Sbjct: 61 YEKQHASGP 69
Score = 70.5 bits (173), Expect = 2e-16
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 35 ASTMYPKCAACQGLIQNI--IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED 92
S+ C C+ I ++ +WH F C C+ PI T+ F +CV
Sbjct: 1 GSSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPC 60
Query: 93 YASLFLNKC 101
Y +
Sbjct: 61 YEKQHASGP 69
Score = 56.6 bits (137), Expect = 3e-11
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 155 KFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSE 212
C C K I ++ WHE CF C RC++PI +F + CV C E
Sbjct: 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62
Query: 213 K 213
K
Sbjct: 63 K 63
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 67.4 bits (165), Expect = 3e-15
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 93 YASLFLNKCQGCRLPIKDV--VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTA 150
+L C+ C+ +V + + +H FVC C + FYE EG +C
Sbjct: 6 ANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEH 65
Query: 151 CYEGKFCPKC 160
++ F P
Sbjct: 66 DFQMLFAPCW 75
Score = 67.4 bits (165), Expect = 3e-15
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 40 PKCAACQGLIQNI--IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
C C+G IV + + +H + F C C F+ G YC D+ LF
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 56.3 bits (136), Expect = 5e-11
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 148 CTACYEGKFCPKCFGCGKPI--TETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADV 205
C C E + + +HE CF C +C + F E
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 206 VCVEC 210
C
Sbjct: 62 YCEHD 66
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 67.5 bits (165), Expect = 3e-15
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 92 DYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFY-EREGNAFCTA 150
DY L+ +C C I+ VV+AL +T+HPD FVC C C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 151 CYE 153
C
Sbjct: 69 CSL 71
Score = 63.3 bits (154), Expect = 1e-13
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCEADVVCVE 209
Y+ + +CF C + I + + +H CF C CR P G + +C +
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 210 CSEKGREEG 218
CS G
Sbjct: 69 CSLPVSVSG 77
Score = 57.9 bits (140), Expect = 1e-11
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLN 99
+C +C I+ +V AL KT+HP+ F C CR+P G
Sbjct: 16 TRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECM---------- 65
Query: 100 KCQGCRLPIKD 110
CQ C LP+
Sbjct: 66 -CQKCSLPVSV 75
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 67.4 bits (165), Expect = 3e-15
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 40 PKCAACQGLIQNI--IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
C C+G IV + + +H + F C C F+ G YC D+ LF
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 64.3 bits (157), Expect = 3e-14
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 92 DYASLFLNKCQGCRLPIKDV--VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT 149
+ C+ C+ +V + + +H FVC C + FYE EG +C
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE 64
Query: 150 ACYEGKF 156
++ F
Sbjct: 65 HDFQMLF 71
Score = 55.1 bits (133), Expect = 9e-11
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 151 CYEGKFCPKCFGCGKPIT--ETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCV 208
++G C C E + + +HE CF C +C + F E C
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE 64
Query: 209 EC 210
Sbjct: 65 HD 66
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 68.5 bits (167), Expect = 3e-15
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 7/111 (6%)
Query: 40 PKCAACQGLIQ-NIIVQALDKTWHPEHFRCTHCRIPIAT--QKFHVHAGSPYCVEDYASL 96
C CQ I ++A+D+ WH + C C + ++ + G C DY L
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 63
Query: 97 FLNKCQGCR----LPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYERE 143
+ + + + + + + T+ + E
Sbjct: 64 GGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE 114
Score = 66.6 bits (162), Expect = 2e-14
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 98 LNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKG--FYEREGNAFCTACYEG 154
L C GC+ I D + A++Q WH D C CG +L G Y + G C Y
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62
Query: 155 KFCPKCFGCGK----PITETAIKVHDRKWHEACFRCGRCRRPISGPTF 198
+ E + + +
Sbjct: 63 LGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANG 110
Score = 46.6 bits (110), Expect = 4e-07
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 158 PKCFGCGKPITE-TAIKVHDRKWHEACFRCGRCRRPIS--GPTFRVCEADVVCVEC 210
C GC + I + +K D+ WHE C C C + G +C
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 67.1 bits (164), Expect = 5e-15
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 40 PKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
CA C+ I++ + ALDK WH F+C C + + T ++ G PYC DY + F
Sbjct: 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQFG 74
Query: 99 NKC 101
+
Sbjct: 75 SGP 77
Score = 65.5 bits (160), Expect = 2e-14
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 92 DYASLFLNKCQGCRLPIKD-VVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTA 150
+ C GC+ IK + AL++ WH F C +C +L + ++G +C +
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCS-VILTGEYISKDGVPYCES 67
Query: 151 CYEGKFCPKC 160
Y +F
Sbjct: 68 DYHAQFGSGP 77
Score = 50.9 bits (122), Expect = 5e-09
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 151 CYEGKFCPKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTF 198
+ + C GC + I ++ D++WH +CF+C C ++G
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI 57
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 65.1 bits (159), Expect = 2e-14
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 99 NKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFC 157
NKC C + V +++H F+C+ C L + +C +CY K+
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67
Query: 158 PKCFGCGK 165
PK +G G+
Sbjct: 68 PKGYGYGQ 75
Score = 61.3 bits (149), Expect = 7e-13
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 40 PKCAACQGLI-QNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
KC AC + VQ +++H F C CR + + +H YC Y +
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67
Query: 99 NKCQGC 104
K G
Sbjct: 68 PKGYGY 73
Score = 46.2 bits (110), Expect = 2e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
KC CG+ + ++ R +H CF C CR+ + T + +A+V C C
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSC 61
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 64.9 bits (158), Expect = 2e-14
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 95 SLFLNKCQGCRLPIKDV----VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTA 150
S + C C PI + + + WH + F C C L+ KGF + FC
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Query: 151 CYEG 154
C G
Sbjct: 62 CGSG 65
Score = 58.7 bits (142), Expect = 5e-12
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 155 KFCPKCFGCGKPITETA----IKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVEC 210
C C KPI+ I D +WH CF CG+C + G F ++ C +C
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 62
Query: 211 SEK 213
Sbjct: 63 GSG 65
Score = 56.4 bits (136), Expect = 4e-11
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 40 PKCAACQ----GLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYAS 95
C AC GL + D WH E F C C + + + F +C + +
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65
Query: 96 LF 97
+
Sbjct: 66 MD 67
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 63.9 bits (156), Expect = 6e-14
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 100 KCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFC-TACYEGKFC 157
KC C + VT+L + WH C CG L G E EG +C CY F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 158 PKCFGCGKPITET 170
PK FG G + T
Sbjct: 62 PKGFGRGGAESHT 74
Score = 62.4 bits (152), Expect = 2e-13
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 40 PKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVED-YASLF 97
PKC C + V +L K WH +C C + + H G PYC Y+++F
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 60
Query: 98 LNKCQGC 104
K G
Sbjct: 61 GPKGFGR 67
Score = 44.6 bits (106), Expect = 7e-07
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVC 207
PKC C K + + + WH C +C +C + ++ E C
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYC 51
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 64.0 bits (155), Expect = 2e-13
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 24 VSEALDPPPNAASTMYPKCAACQGLIQN-IIVQALDKTWHPEHFRCTHCRIPIA--TQKF 80
+ + +CA C G I + ++ A+D WH +C+ C+ +
Sbjct: 46 GGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS 105
Query: 81 HVHAGSPYCVEDYASLF 97
+ +G C DY LF
Sbjct: 106 YTKSGMILCRNDYIRLF 122
Score = 62.4 bits (151), Expect = 7e-13
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 63 PEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKD-VVVTALNQTWH 121
++ + + G L +C GC I D ++ A++ WH
Sbjct: 26 SQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWH 85
Query: 122 PDHFVCISCGTKLLYKGF--YEREGNAFCTACYEGKF 156
C SC +L G Y + G C Y F
Sbjct: 86 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122
Score = 50.1 bits (119), Expect = 3e-08
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITE-TAIKVHDRKWH 180
+ + ++ G + G +C GCG I + + D WH
Sbjct: 26 SQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWH 85
Query: 181 EACFRCGRCRRPISGPTFR 199
C +C C+ +
Sbjct: 86 SRCLKCSSCQAQLGDIGTS 104
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 61.0 bits (148), Expect = 9e-13
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKC 160
CQ C I + + N +HPDHF C +CG +L E +G +C C++
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGP 76
Score = 58.3 bits (141), Expect = 9e-12
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 34 AASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDY 93
A C C +I + + +HP+HF C +C + T G YC+ +
Sbjct: 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL-TADARELKGELYCLPCH 68
Query: 94 ASLFLNKC 101
+ ++
Sbjct: 69 DKMGVSGP 76
Score = 44.8 bits (106), Expect = 7e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 148 CTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVC 207
G C C I E + + +H F C C + + R + ++ C
Sbjct: 6 SGEKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL-TADARELKGELYC 64
Query: 208 VECSEK 213
+ C +K
Sbjct: 65 LPCHDK 70
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 59.7 bits (145), Expect = 2e-12
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 33 NAASTMYPKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVE 91
+ +S M KC C + V +L K WH +C C + H G P+C +
Sbjct: 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
Query: 92 D-YASLFLNKCQ 102
YA+LF +
Sbjct: 63 PCYATLFGSGPS 74
Score = 51.2 bits (123), Expect = 3e-09
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 100 KCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCT-ACYEGKFC 157
KC C + V++L + WH C C L G E +G FC CY F
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 70
Query: 158 PKC 160
Sbjct: 71 SGP 73
Score = 43.2 bits (102), Expect = 3e-06
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVC 207
KC C K + + + WH+ C +C RC + ++ + C
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 59.3 bits (143), Expect = 1e-11
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 5/107 (4%)
Query: 93 YASLFLNK--CQGCRLPI--KDVVVTALNQTWHPDHFVCISCGTKLLY-KGFYEREGNAF 147
Y LF C C I ++ + ++ +H + F C +C + +
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 148 CTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPIS 194
C G + + V R I+
Sbjct: 61 CEQDIYEWTKINGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLIT 107
Score = 57.0 bits (137), Expect = 6e-11
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 40 PKCAACQGLIQ--NIIVQALDKTWHPEHFRCTHCRIPIAT-QKFHVHAGSPYCVEDYASL 96
CA+C I+ + ++ DK +H E F+C C+ + ++ + C +D
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEW 68
Query: 97 FLNKCQGCRLPIKDVVVTALNQTWHPDH 124
V + +
Sbjct: 69 TKINGGSGGSGGSGGDVMVVGEPTLMGG 96
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 55.2 bits (133), Expect = 2e-10
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 40 PKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFL 98
C CQ + + + A + +H FRC++C ++ + G YC + LF
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75
Query: 99 NKCQGCR 105
+K
Sbjct: 76 SKGNYDE 82
Score = 54.1 bits (130), Expect = 4e-10
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 100 KCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
C C+ + + + A Q +H F C C KL + G +C + F
Sbjct: 17 TCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 76
Query: 159 KCFGCG 164
K
Sbjct: 77 KGNYDE 82
Score = 44.1 bits (104), Expect = 2e-06
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEK 213
C C K + + + + +H +CFRC C +S T+ + C +
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQ 72
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 47.4 bits (112), Expect = 7e-08
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI-SGPTFRVCEADVVCVECSEKGRE 216
C C K IT ++ ++ +H +C C RC + G + + + C + R
Sbjct: 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65
Query: 217 EGKNDTS 223
E +S
Sbjct: 66 EDSGPSS 72
Score = 47.4 bits (112), Expect = 9e-08
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIAT-QKFHVHAGSPYC 89
S+ C +C+ I +++A +K +HP C C A ++ ++ S +
Sbjct: 1 GSSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 44.3 bits (104), Expect = 1e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 94 ASLFLNKCQGCRLPIKDVVVTALNQTWHPDHFVCISCGTKLLYK-GFYEREGNAFCTACY 152
S + C C I V+ A + +HP +C+ CG Y + + + AC
Sbjct: 1 GSSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACR 60
Query: 153 EGK 155
+
Sbjct: 61 QAA 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 39.5 bits (92), Expect = 5e-05
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 97 FLNKCQGCRLPIK--DVVVTALNQTWHPDH--FVCISCGTKLLYKGFYEREGNAFC-TAC 151
CQGC I VT N +WH F+C C L+ + F EG FC C
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 60
Query: 152 Y 152
Sbjct: 61 K 61
Score = 38.7 bits (90), Expect = 8e-05
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 156 FCPKCFGCGKPI--TETAIKVHDRKWH--EACFRCGRCRRPISGPTFRVCEADVVC-VEC 210
C GC I + ++ WH CF C C + + G F E V C VEC
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 60
Query: 211 SEK 213
++
Sbjct: 61 KKR 63
Score = 32.1 bits (73), Expect = 0.020
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 41 KCAACQGLIQ--NIIVQALDKTWHPEH--FRCTHCRIPIATQKFHVHAGSPYC 89
C C I V + +WH F C+ C + QKF G +C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 39.9 bits (93), Expect = 5e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 40 PKCAACQGLIQNI-IVQALDKTWHPEHFRCTHCRIPIA--TQKFHVHAGSPYCVEDYASL 96
CA C + + + +H FRC C + + H G YC++
Sbjct: 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75
Query: 97 F 97
Sbjct: 76 D 76
Score = 38.4 bits (89), Expect = 1e-04
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACFRCGRCRRPISGPTFRVCEAD 204
C CG+ + + V+ +H +CFRC C + + D
Sbjct: 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGD 63
Score = 37.2 bits (86), Expect = 4e-04
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 99 NKCQGCRLPIKDV-VVTALNQTWHPDHFVCISCGTKLLYKGF--YEREGNAFCTACY 152
+ C C + + + +H F C +C L G+ + +G+ +C
Sbjct: 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.014
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 32/93 (34%)
Query: 35 ASTMYPKCAACQGLIQNIIVQALDKTWHPEHFRC--THCRIPIATQ------------KF 80
S Y C ++V L + + + C+I + T+
Sbjct: 239 KSKPYENC---------LLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 81 HV---HAGSPYCVEDYASLFLNKCQGCR---LP 107
H+ H ++ SL L K CR LP
Sbjct: 288 HISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLP 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.060
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 64/147 (43%)
Query: 9 APSPLLGQGDETDVDVSEALD------PPPNAASTMYPKCAACQGLI---QNIIVQALDK 59
PSP+L + T V + ++ P L+ +N++V
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---------SLVNGAKNLVV----- 379
Query: 60 TWHPE-------HFR-------CTHCRIPIATQK-------------FHVHAGSPY---- 88
+ P+ R RIP + +K FH S
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH----SHLLVPA 435
Query: 89 ---CVEDYAS--LFLNKCQGCRLPIKD 110
+D + N ++P+ D
Sbjct: 436 SDLINKDLVKNNVSFNAKD-IQIPVYD 461
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 29.1 bits (65), Expect = 0.95
Identities = 7/35 (20%), Positives = 8/35 (22%), Gaps = 1/35 (2%)
Query: 120 WHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEG 154
P C CG G C+ C
Sbjct: 146 VIPQTARCARCGAPDPE-HPDPLGGQLLCSKCAAL 179
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 26.2 bits (57), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACF 184
P C CGK + T + D+ WH+ACF
Sbjct: 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31
>2d74_B Translation initiation factor 2 beta subunit; protein complex;
2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Length = 148
Score = 27.2 bits (60), Expect = 2.9
Identities = 19/80 (23%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 121 HPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKF------CPKCFGCGKPITETAIKV 174
H F+ T +G F K C CG P +T I
Sbjct: 62 HLLKFLLREIATAGTLEGRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSP--DTKIIK 119
Query: 175 HDRKWHEACFRCGRCRRPIS 194
DR C CG PI
Sbjct: 120 RDRFHFLKCEACG-AETPIQ 138
>3mhs_E SAGA-associated factor 73; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_E 3m99_D
Length = 96
Score = 26.4 bits (57), Expect = 3.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 160 CFGCGKPITETAIKVH 175
C CGKP+ TAI H
Sbjct: 78 CEKCGKPLALTAIVDH 93
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 27.4 bits (60), Expect = 3.3
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 121 HPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPIT-----ETAIKVH 175
C SC + + G Y G C C P+ E +I+ H
Sbjct: 19 VTLELSCPSCDKRFPFGGIVSSNYYRV---SYNGLQCKHCEQLFTPLQLTSQIEHSIRAH 75
Query: 176 DRKWHEACFRC 186
++ +C
Sbjct: 76 ISLYYAGWLQC 86
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4
type zinc finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 157
Score = 27.3 bits (60), Expect = 3.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI 193
C C P T+ + + +C CG R +
Sbjct: 106 CPECENPETDLHVNPKKQTIGNSCKACG-YRGML 138
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR
{Homo sapiens}
Length = 170
Score = 27.4 bits (60), Expect = 3.6
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPI 193
C C P T+ + + +C CG R +
Sbjct: 99 CPECENPETDLHVNPKKQTIGNSCKACG-YRGML 131
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2nxu_A 2qmu_C* 3v11_C*
Length = 139
Score = 26.8 bits (59), Expect = 3.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACFRCGRCRRPIS 194
C C +T +K + W+ C CG + P+
Sbjct: 106 CSTCKSL--DTILKKEKKSWYIVCLACG-AQTPVK 137
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 27.5 bits (60), Expect = 4.1
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 6/55 (10%)
Query: 172 IKVHDRKWHEACFRCGRCRRPI------SGPTFRVCEADVVCVECSEKGREEGKN 220
I R E + C C + + V C C+ + +
Sbjct: 422 IAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQG 476
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure,
protein turnover, protein transport; HET: EPE; 2.50A
{Kluyveromyces marxianus}
Length = 274
Score = 27.3 bits (60), Expect = 4.7
Identities = 10/83 (12%), Positives = 25/83 (30%)
Query: 48 LIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLP 107
L ++L ++ +P+ ++ V + QG +
Sbjct: 191 LFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVS 250
Query: 108 IKDVVVTALNQTWHPDHFVCISC 130
I+D + + D F+ +
Sbjct: 251 IEDNIFELYDIFASIDGFLYLVT 273
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit;
two domain protein, mixed alpha-beta structure; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.241.1.1
g.59.1.1
Length = 138
Score = 26.4 bits (58), Expect = 5.0
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 157 CPKCFGCGKPITETAIKVHDRKWHEACFRCGRCR 190
C C +P +T I R C CG
Sbjct: 102 FVICHECNRP--DTRIIREGRISLLKCEACGAKA 133
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase,
tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Length = 123
Score = 26.2 bits (57), Expect = 5.1
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 155 KFCPKCFGCGKPITETAIKVHDRKWHEA---CFRCGRCRR 191
++C KC P +++ ++ C CG R
Sbjct: 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3,
hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Length = 120
Score = 26.1 bits (57), Expect = 6.0
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 155 KFCPKCFGCGKPITETAIKVHDRKWHEA---CFRCGRCRR 191
++C +C P +++ ++ C CG R
Sbjct: 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 6.2
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 177 RKWHEACFRCGRCRRPISGPTFRVCEADVVCVECSEKGREEGKNDTSSYFEEDEEE 232
RKW E +R R+ E D ++ RE+ K D + + E+
Sbjct: 88 RKWREE-------QRK------RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome
biogenesis, metal BIN protein; NMR {Pyrococcus
horikoshii}
Length = 165
Score = 26.4 bits (58), Expect = 7.0
Identities = 6/20 (30%), Positives = 6/20 (30%), Gaps = 7/20 (35%)
Query: 148 CTACY-------EGKFCPKC 160
C C G CP C
Sbjct: 135 CIGCGRKFSTLPPGGVCPDC 154
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 26.3 bits (58), Expect = 7.5
Identities = 3/20 (15%), Positives = 5/20 (25%), Gaps = 4/20 (20%)
Query: 106 LPIKDVVVTALNQTWHPDHF 125
+ + WH D
Sbjct: 73 AKVTTFIPN----HWHGDCI 88
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide,
zinc dependen hydrolase; HET: MSE PG4; 1.60A
{Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A*
3dfm_A 2xad_A*
Length = 273
Score = 26.5 bits (58), Expect = 7.7
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 110 DVVVTALNQTWHPDHFVC 127
+VVT HPDH
Sbjct: 150 TLVVTCAAIGEHPDHEAT 167
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding,
helix-turn-helix, zinc binding, GE regulation; 2.70A
{Mycobacterium tuberculosis}
Length = 131
Score = 25.7 bits (57), Expect = 9.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 116 LNQTWHPDHFVCISCGT 132
H H VC SCG+
Sbjct: 75 RCSEHHHHHLVCRSCGS 91
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 25.2 bits (54), Expect = 9.5
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 124 HFVCISCGTKLLYKGFYEREGNAFCTAC---YEGKFCPKCFGCGKPITETAIKVHDRKWH 180
HF C CG + G + FC C +E K C GC P+ I+ R
Sbjct: 2 HF-CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR--IEQCTRGSL 58
Query: 181 EACFRCGRCRR 191
C C+R
Sbjct: 59 FMCSIVQGCKR 69
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 9.9
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 185 RCGRCRRPISGPTFRVCEADVVCVEC 210
C C+ R E DVVC C
Sbjct: 23 TCPECKVYPPKIVERFSEGDVVCALC 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.470
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,736,220
Number of extensions: 218989
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 227
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)