RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11756
(233 letters)
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 47.7 bits (114), Expect = 8e-09
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 91 EDYASLFLNKCQGCRLPIKDVVVTALNQTWHPDHF 125
+D+ ++F KC GC P+ + ++A++ WHP+ F
Sbjct: 1 KDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 40.8 bits (96), Expect = 3e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 152 YEGKFCPKCFGCGKPITETAIKVHDRKWHEACF 184
+ F PKC GC +P+ E + D WH CF
Sbjct: 3 FLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 39.6 bits (93), Expect = 6e-06
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHF 66
PKC C + + A+D WHPE F
Sbjct: 9 PKCGGCNRPVLENYLSAMDTVWHPECF 35
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 44.4 bits (105), Expect = 2e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 34 AASTMYPKCAACQGLIQNIIVQALDKTWHPEHF 66
A P CA C +I+ + AL K+WHPE F
Sbjct: 13 PAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 43.6 bits (103), Expect = 3e-07
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 100 KCQGCRLPIKDVVVTALNQTWHPDHF 125
C C I+ + AL ++WHP+ F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 31.3 bits (71), Expect = 0.008
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACF 184
P C C + I + + WH F
Sbjct: 19 PMCAHCNQVIRGPFLVALGKSWHPEEF 45
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 42.4 bits (100), Expect = 7e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKVHDRKWHEACF 184
CYE KF P+C C K +T+ + D+ WH C
Sbjct: 2 CYENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35
Score = 23.2 bits (50), Expect = 5.1
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 93 YASLFLNKCQGCRLPIKDVVVTALNQTWHPDHF 125
Y + F +C C + VT +Q WH +
Sbjct: 3 YENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 42.0 bits (99), Expect = 1e-06
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEH 65
P C AC+ I+ +V A+ K WH EH
Sbjct: 6 PICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 41.3 bits (97), Expect = 2e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 96 LFLNKCQGCRLPIKDVVVTALNQTWHPDH 124
+ + C CR PI+ VV A+ + WH +H
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 29.0 bits (65), Expect = 0.043
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 156 FCPKCFGCGKPITETAIKVHDRKWH 180
P C C +PI + ++WH
Sbjct: 4 GVPICGACRRPIEGRVVNAMGKQWH 28
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 38.2 bits (89), Expect = 2e-05
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 66 FRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
F C C F+ G YC D+ LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
Score = 37.0 bits (86), Expect = 6e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKFCP 158
FVC C + FYE EG +C ++ F P
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 36.3 bits (84), Expect = 1e-04
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 151 CYEGKFCPKCFGCGKPITETAIKVH--DRKWHEACF 184
C + PKC GC K I V WH+ CF
Sbjct: 2 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Score = 28.2 bits (63), Expect = 0.093
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 93 YASLFLNKCQGCRLPIK--DVVVTALNQTWHPDHF 125
KC+GC I D V WH D F
Sbjct: 3 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 33.9 bits (78), Expect = 0.001
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 CISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCG 164
C CG L +++G +C CY F PK FG G
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFG 39
Score = 27.4 bits (61), Expect = 0.25
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 67 RCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGC 104
RC C + + G YC YA F K G
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 38
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 32.5 bits (74), Expect = 0.002
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 68 CTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
CT C+ P+A Q+F PYCV + LF
Sbjct: 2 CTGCQTPLAGQQFTSRDEDPYCVACFGELF 31
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 32.4 bits (74), Expect = 0.003
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 158 PKCFGCGKPITETAI-KVHDRKWHEAC 183
C GC + I + K D+ WHE C
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDC 30
Score = 25.5 bits (56), Expect = 0.79
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 38 MYPKCAACQGLIQN-IIVQALDKTWH 62
C CQ I + ++A+D+ WH
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWH 27
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 32.1 bits (73), Expect = 0.005
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 DYASLFLNKCQGCRLPIKDVVVTALNQTWHP 122
DY L+ +C C I+ VV+AL +T+HP
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHP 39
Score = 29.8 bits (67), Expect = 0.023
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 41 KCAACQGLIQNIIVQALDKTWHPE 64
+C +C I+ +V AL KT+HP+
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPD 40
Score = 29.8 bits (67), Expect = 0.028
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 152 YEGKFCPKCFGCGKPITETAIKVHDRKWHEAC 183
Y+ + +CF C + I + + +H C
Sbjct: 10 YQRLYGTRCFSCDQFIEGEVVSALGKTYHPDC 41
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 31.6 bits (72), Expect = 0.005
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 159 KCFGCGKPITETAI-KVHDRKWHEAC 183
+C GCG I + + D WH C
Sbjct: 4 RCAGCGGKIADRFLLYAMDSYWHSRC 29
Score = 25.5 bits (56), Expect = 0.84
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 39 YPKCAACQGLIQN-IIVQALDKTWHPE 64
+ +CA C G I + ++ A+D WH
Sbjct: 2 WKRCAGCGGKIADRFLLYAMDSYWHSR 28
Score = 24.7 bits (54), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 100 KCQGCRLPIKD-VVVTALNQTWHPD 123
+C GC I D ++ A++ WH
Sbjct: 4 RCAGCGGKIADRFLLYAMDSYWHSR 28
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 31.3 bits (71), Expect = 0.006
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 68 CTHCRIPIATQKFHVHAGSPYCVEDYASL 96
C C +T F G P+C Y
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHYHHR 30
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 30.8 bits (70), Expect = 0.008
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 68 CTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
CT CR ++ Q+F YC+ + L+
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
Score = 25.8 bits (57), Expect = 0.65
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
VC +C +L + F R+ A+C C+ +
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 31.2 bits (71), Expect = 0.008
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 67 RCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNK 100
RC++C ++ + G YC + LF +K
Sbjct: 1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34
Score = 25.0 bits (55), Expect = 1.5
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 127 CISCGTKLLYKGFYEREGNAFCTACYEGKFCPK 159
C C KL + G +C + F K
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 30.6 bits (69), Expect = 0.010
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACY 152
VC +C +L + FY E A+C CY
Sbjct: 1 VCSTCRAQLRGQHFYAVERRAYCEGCY 27
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 30.6 bits (69), Expect = 0.024
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGK 165
+C+ C L +C +CY K+ PK G G
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGM 40
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.1 bits (65), Expect = 0.038
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACF 184
C C KPIT + ++ WH+ CF
Sbjct: 1 CVQCKKPITTGGVTYREQPWHKECF 25
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.6 bits (64), Expect = 0.052
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
+C C L + F +G +C CYE KF
Sbjct: 1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 31
Score = 24.8 bits (54), Expect = 1.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 186 CGRCRRPISGPTFRVCEADVVCVECSEK 213
C C +P+ +F + CV C E
Sbjct: 2 CSGCEQPLGSRSFVPDKGAHYCVPCYEN 29
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.6 bits (64), Expect = 0.058
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 41 KCAACQGLIQNIIVQALDKTWHPEHF 66
KCA C I + I++A+ K +HP F
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35
Score = 27.0 bits (60), Expect = 0.23
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 98 LNKCQGCRLPIKDVVVTALNQTWHPDHF 125
L KC C PI D ++ A+ + +HP F
Sbjct: 8 LEKCATCSQPILDRILRAMGKAYHPGCF 35
Score = 26.7 bits (59), Expect = 0.33
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 159 KCFGCGKPITETAIKVHDRKWHEACF 184
KC C +PI + ++ + +H CF
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.2 bits (63), Expect = 0.075
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
+C C + K F ++ FC CYE +
Sbjct: 1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 31
Score = 25.1 bits (55), Expect = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 186 CGRCRRPISGPTFRVCEADVVCVECSEK 213
C RC++PI +F + CV C EK
Sbjct: 2 CHRCQQPIGTKSFIPKDNQNFCVPCYEK 29
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 28.3 bits (63), Expect = 0.075
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACF 184
C C K IT I D+ WH CF
Sbjct: 1 CVKCNKAITSGGITYQDQPWHADCF 25
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.2 bits (63), Expect = 0.081
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 127 CISCGTKLLYKGFYEREGNAFCTACYEGKF 156
C C + Y GF E +G +C CYE F
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31
Score = 22.4 bits (48), Expect = 8.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 68 CTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
C HC+ +A F G+ YC Y F
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 28.6 bits (64), Expect = 0.082
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 30 PPPNAASTMYPKCAACQGLIQNIIVQALDKTWHPEHF 66
++ P C C I +V+A DK HPE F
Sbjct: 9 HGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECF 45
Score = 25.5 bits (56), Expect = 0.92
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACF 184
P C CG I +K D+ H CF
Sbjct: 19 PLCDKCGSGIVGAVVKARDKYRHPECF 45
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 27.9 bits (62), Expect = 0.10
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 160 CFGCGKPITETA----IKVHDRKWHEACF 184
C GC PI+ I +R+WH CF
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDCF 29
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5,
FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 27.5 bits (61), Expect = 0.14
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 160 CFGCGKPIT----ETAIKVHDRKWHEACF 184
C C KPI+ I D +WH CF
Sbjct: 1 CVACSKPISGLTGAKFICFQDSQWHSECF 29
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 29.4 bits (65), Expect = 0.27
Identities = 22/132 (16%), Positives = 34/132 (25%), Gaps = 21/132 (15%)
Query: 62 HPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRLPIKDVVVTALNQTWH 121
PE F + P + A L L K Q
Sbjct: 38 TPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQ----------------DAL 81
Query: 122 PDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHE 181
D F+ ++ +ER GN + +C G+ + T + K H
Sbjct: 82 GDRFLLVTQ----NIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCH- 136
Query: 182 ACFRCGRCRRPI 193
C R +
Sbjct: 137 CCQFPAPLRPHV 148
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.0 bits (57), Expect = 0.60
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 66 FRCTHCRIPIATQKFHVHAGSPYCVEDYASLF 97
F C C P + + G YC Y LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
Score = 25.2 bits (55), Expect = 1.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 125 FVCISCGTKLLYKGFYEREGNAFCTACYEGKF 156
FVC C L YER+G A+C Y F
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 25.3 bits (55), Expect = 0.74
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 160 CFGCGKPITETAIKVH--DRKWHEACF 184
C C KPI + +VH +R WH+ CF
Sbjct: 1 CVECRKPIGADSKEVHYKNRFWHDTCF 27
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.6 bits (56), Expect = 0.83
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 160 CFGCGKPITE-TAIKVHDRKWHEACF 184
C GC + I ++ D++WH +CF
Sbjct: 11 CAGCKEEIKHGQSLLALDKQWHVSCF 36
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.2 bits (55), Expect = 0.95
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 158 PKCFGCGKPITETAIKVHDRKWHEACF 184
P C CG I +K+ DR H C+
Sbjct: 9 PMCDKCGTGIVGVFVKLRDRHRHPECY 35
Score = 24.8 bits (54), Expect = 1.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 40 PKCAACQGLIQNIIVQALDKTWHPEHF 66
P C C I + V+ D+ HPE +
Sbjct: 9 PMCDKCGTGIVGVFVKLRDRHRHPECY 35
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 25.0 bits (54), Expect = 1.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 125 FVCISCGTKLLYKGFYEREGNAFCTACY 152
F C CG L E+EG +C CY
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCKGCY 28
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 34
Score = 25.1 bits (55), Expect = 1.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 91 EDYASLFLNKCQGCRLPIKDVVVTALNQTWHPD 123
+DY F C GC L + + A +HP+
Sbjct: 1 KDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPE 33
Score = 23.2 bits (50), Expect = 5.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 152 YEGKFCPKCFGCGKPITETAIKVHDRKWHEAC 183
Y GKF C GC +T + + K+H C
Sbjct: 3 YWGKFGEFCHGCSLLMTGPFMVAGEFKYHPEC 34
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 25.5 bits (56), Expect = 1.2
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 127 CISCGTKLLYKGFYEREGNAFCT-ACYEGKFCPKCFGCG 164
C CG L G E EG +C CY F PK FG G
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRG 40
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 26.9 bits (59), Expect = 1.3
Identities = 3/49 (6%), Positives = 15/49 (30%)
Query: 43 AACQGLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVE 91
+ L+ ++I + + + + + + + P+
Sbjct: 16 GVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 64
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 24.8 bits (54), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACF 184
P C CGK + T + D+ WH+ACF
Sbjct: 3 PNCARCGKIVYPTEKVNCLDKFWHKACF 30
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 26.2 bits (57), Expect = 2.3
Identities = 7/79 (8%), Positives = 16/79 (20%)
Query: 47 GLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRL 106
L+ ++ + K + A + G P+
Sbjct: 16 NLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVW 75
Query: 107 PIKDVVVTALNQTWHPDHF 125
+ TA +
Sbjct: 76 EGLNAAATARQILGATNPS 94
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.7 bits (51), Expect = 2.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 42 CAACQGLIQNIIVQALDKTWHPEHF 66
C C I +++A++ +WHPE F
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
Score = 23.3 bits (50), Expect = 3.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 160 CFGCGKPITETAIKVHDRKWHEACF 184
C CG+ I IK + WH CF
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
Score = 23.3 bits (50), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHF 125
C C I V+ A+N +WHP+ F
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (51), Expect = 3.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 186 CGRCRRPISGPTFRVCEADVVCVEC 210
C C + ++G F E CV+C
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYCVDC 26
Score = 23.4 bits (50), Expect = 3.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 68 CTHCRIPIATQKFHVHAGSPYCVEDYAS 95
C C +A Q+F YCV+ Y +
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYCVDCYKN 29
Score = 22.6 bits (48), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 126 VCISCGTKLLYKGFYEREGNAFCTACYE 153
VC++C KL + F E +C CY+
Sbjct: 1 VCVTCSKKLAGQRFTAVEDQYYCVDCYK 28
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.6 bits (51), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 101 CQGCRLPIKDVVVTALNQTWHPDHF 125
CQ C I + + N +HPDHF
Sbjct: 11 CQKCHAIIDEQPLIFKNDPYHPDHF 35
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 25.4 bits (55), Expect = 4.4
Identities = 9/66 (13%), Positives = 19/66 (28%)
Query: 47 GLIQNIIVQALDKTWHPEHFRCTHCRIPIATQKFHVHAGSPYCVEDYASLFLNKCQGCRL 106
GLI +I+ + K + +A + + H P+ + +
Sbjct: 17 GLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVW 76
Query: 107 PIKDVV 112
D
Sbjct: 77 EGADAT 82
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 92
Score = 25.0 bits (53), Expect = 4.6
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 32 PNAASTMYPKCAACQGLIQNIIVQALDKTWHPEHF 66
A C AC G+ N K
Sbjct: 4 AEAGQGKVAVCGACHGVDGNSPAPNFPKLAGQGER 38
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 23.0 bits (49), Expect = 5.0
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 160 CFGCGKPITETAIKVHDR--KWHEACF 184
C C K I K+ + WHE CF
Sbjct: 1 CQECKKTIMPGTRKMEYKGSSWHETCF 27
>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription
factor FadR, C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 152
Score = 24.9 bits (53), Expect = 7.0
Identities = 4/58 (6%), Positives = 10/58 (17%)
Query: 135 LYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVHDRKWHEACFRCGRCRRP 192
+++G GN G + ++
Sbjct: 70 IFRGLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAH 127
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 24.1 bits (51), Expect = 7.7
Identities = 6/59 (10%), Positives = 15/59 (25%)
Query: 117 NQTWHPDHFVCISCGTKLLYKGFYEREGNAFCTACYEGKFCPKCFGCGKPITETAIKVH 175
+TW ++L+ ++G T + + K+
Sbjct: 13 GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQ 71
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 22.9 bits (49), Expect = 8.7
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 158 PKCFGCGKPITET-AIKVHDRKWHEACF 184
C CG+ + + + WH++CF
Sbjct: 16 DGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.7 bits (48), Expect = 8.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 185 RCGRCRRPISGPTFRVCEADVVCVECSEK 213
RC +C P++ TF + ++C +C+ +
Sbjct: 1 RCAKCLHPLANETFVAKDNKILCNKCTTR 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.470
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,550
Number of extensions: 48784
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 173
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)