BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1176
(232 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|170041155|ref|XP_001848339.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
gi|167864704|gb|EDS28087.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
Length = 515
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 166/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRTNHYTPLPFG SPL R I++Y+ +G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 57 NFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINLDKPSNPSSHEVVAWIKKILKVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+++FKLHSAVE+VAK +
Sbjct: 117 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVFKLHSAVESVAK-------VN 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D + G+ W+ C+AG+Y+R
Sbjct: 170 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDDQRNMGVFWVSCEAGSYIR 226
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLV GVG QM+ELRR RSGIQSE+DG+VT
Sbjct: 227 TMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTM 262
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KAS KK +I G LDK GKPN+ TP +L KP+
Sbjct: 384 KASMKKQLIASGKLDKFGKPNDKTPKEWLTGYTDYNKAKPS 424
>gi|170029441|ref|XP_001842601.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
gi|167862432|gb|EDS25815.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
Length = 521
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 166/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRTNHYTPLPFG SPL R I++Y+ +G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 57 NFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINLDKPSNPSSHEVVAWIKKILKVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+++FKLHSAVE+VAK +
Sbjct: 117 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVFKLHSAVESVAK-------VN 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D + G+ W+ C+AG+Y+R
Sbjct: 170 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDDQRNMGVFWVSCEAGSYIR 226
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLV GVG QM+ELRR RSGIQSE+DG+VT
Sbjct: 227 TMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTM 262
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KAS KK +I G LDK GKPN+ TP +L KP+
Sbjct: 384 KASMKKQLIASGKLDKFGKPNDKTPKEWLTGYTDYNKAKPS 424
>gi|195023790|ref|XP_001985751.1| GH20974 [Drosophila grimshawi]
gi|193901751|gb|EDW00618.1| GH20974 [Drosophila grimshawi]
Length = 509
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/216 (62%), Positives = 163/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EYI+ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 54 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLDKPSNPSSHEVVAWIKKILKVEK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 114 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 167 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIR 223
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 224 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 259
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 381 KASAKKALIAAGKLDKFGRPNENTPKEWLTGFVDYNAKKP 420
>gi|375065910|gb|AFA28436.1| FI18403p1 [Drosophila melanogaster]
Length = 534
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 82 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 141
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 142 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 194
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 195 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 251
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 252 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 287
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 409 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 448
>gi|157136797|ref|XP_001656912.1| centromere/microtubule binding protein cbf5 [Aedes aegypti]
gi|108880941|gb|EAT45166.1| AAEL003514-PA [Aedes aegypti]
Length = 527
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 164/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRTNHYTPLPFG SPL R I++Y+ +G++NLDKPSNPSSHEVVAWIK+IL+ +K
Sbjct: 62 NFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINLDKPSNPSSHEVVAWIKKILKVDK 121
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+++FKLHSAVE+VAK +
Sbjct: 122 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVFKLHSAVESVAK-------VN 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D + G+ W+ C+AG+Y+R
Sbjct: 175 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDDQRNMGVFWVSCEAGSYIR 231
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLV GVG QM+ELRR RSGIQSE+DG+VT
Sbjct: 232 TMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTM 267
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK+GKPN+ TP +L
Sbjct: 389 KASMKKQLIASGKLDKYGKPNDKTPKEWL 417
>gi|157816752|gb|ABV82369.1| LD07711p [Drosophila melanogaster]
Length = 489
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 77 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 136
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 137 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 189
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 190 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 246
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 247 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 282
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 404 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 443
>gi|195341866|ref|XP_002037526.1| GM18314 [Drosophila sechellia]
gi|194132376|gb|EDW53944.1| GM18314 [Drosophila sechellia]
Length = 502
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG 167
KAS KK +I G LDK G+PNENTP +L KKP + DV+ + G
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPA-------AQDVSATNG 432
>gi|195586327|ref|XP_002082929.1| GD11839 [Drosophila simulans]
gi|194194938|gb|EDX08514.1| GD11839 [Drosophila simulans]
Length = 508
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG 167
KAS KK +I G LDK G+PNENTP +L KKP + DV+ + G
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPA-------AQDVSATNG 432
>gi|17975520|ref|NP_525120.1| nucleolar protein at 60B, isoform A [Drosophila melanogaster]
gi|62471759|ref|NP_001014547.1| nucleolar protein at 60B, isoform B [Drosophila melanogaster]
gi|281364183|ref|NP_001163286.1| nucleolar protein at 60B, isoform C [Drosophila melanogaster]
gi|281364189|ref|NP_001163289.1| nucleolar protein at 60B, isoform F [Drosophila melanogaster]
gi|3914156|sp|O44081.1|DKC1_DROME RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Nucleolar protein AT band 60B; AltName:
Full=Protein minifly
gi|2661227|gb|AAC97117.1| nucleolar protein at band 60B [Drosophila melanogaster]
gi|4322557|gb|AAD16092.1| minifly protein [Drosophila melanogaster]
gi|7291757|gb|AAF47178.1| nucleolar protein at 60B, isoform A [Drosophila melanogaster]
gi|61678336|gb|AAX52682.1| nucleolar protein at 60B, isoform B [Drosophila melanogaster]
gi|112382762|gb|ABI17547.1| MFL protein [Drosophila melanogaster]
gi|272432682|gb|ACZ94558.1| nucleolar protein at 60B, isoform C [Drosophila melanogaster]
gi|272432685|gb|ACZ94561.1| nucleolar protein at 60B, isoform F [Drosophila melanogaster]
Length = 508
Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 163/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 422
>gi|19528063|gb|AAL90146.1| AT23018p, partial [Drosophila melanogaster]
Length = 468
Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 163/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 422
>gi|328716300|ref|XP_001948470.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Acyrthosiphon pisum]
Length = 478
Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 131/216 (60%), Positives = 166/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+FD +NVRTNHYTPLPFG +PLQR I+EY++AGY+NLDKPSNPSSHEVVAWIKR+L+ EK
Sbjct: 58 HFDNMNVRTNHYTPLPFGSNPLQREIREYVKAGYINLDKPSNPSSHEVVAWIKRMLKVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPKTSG L+VCI+RATRLVKSQQS+GKEYIS+FKLHS VE++ + +K ++
Sbjct: 118 TGHSGTLDPKTSGVLVVCIERATRLVKSQQSSGKEYISVFKLHSPVESILQINKTLESLR 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y ++ L+ D+ + G+ W+KC+AGTYVR
Sbjct: 178 GALFQR---------PPLISAVKRQLRIRTIY-ENKLLDYDMEANIGVFWIKCEAGTYVR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LG G QMIELRRNRSGI SEE+GL T
Sbjct: 228 TLCVHMGLMLGTGGQMIELRRNRSGITSEEEGLATL 263
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
AS KK MIK GLLDK+GKPNENTP ++ P +K
Sbjct: 386 ASTKKSMIKDGLLDKYGKPNENTPENWSQTFYKEPIEK 423
>gi|158297969|ref|XP_318082.4| AGAP004739-PA [Anopheles gambiae str. PEST]
gi|157014582|gb|EAA13199.5| AGAP004739-PA [Anopheles gambiae str. PEST]
Length = 521
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/228 (58%), Positives = 168/228 (73%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRTNHYTPLPFG SPL R I +Y+ AG++NLDKPSNPSSHEVVAWIKRIL+ K
Sbjct: 61 NFDRLNVRTNHYTPLPFGSSPLNRKINDYVSAGFINLDKPSNPSSHEVVAWIKRILKVNK 120
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+++FKLHSAVE +AK +
Sbjct: 121 TGHSGTLDPKVTGCLIVCINRATRLVKSQQSAGKEYVAVFKLHSAVEKIAK-------VT 173
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ + + G+ W+ C+AG+Y+R
Sbjct: 174 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYNDQRNIGVFWVSCEAGSYIR 230
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GLVLGVG QM+ELRR RSGIQSE+DG+VT ++++E+
Sbjct: 231 TMCVHLGLVLGVGGQMLELRRVRSGIQSEKDGMVTMHDVLDAQYLYEN 278
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK+GKPNENTP +L
Sbjct: 388 KASMKKQLIASGKLDKYGKPNENTPKDWL 416
>gi|193676464|ref|XP_001951759.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Acyrthosiphon pisum]
Length = 476
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/219 (63%), Positives = 166/219 (75%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+FD +NVRTNHYTPLPFG +PLQR I+EYI+AGY+NLDKPSNPSSHEVVAWIKR+L+ EK
Sbjct: 58 HFDNMNVRTNHYTPLPFGSNPLQREIREYIKAGYINLDKPSNPSSHEVVAWIKRMLKVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPKTSG L+VCI+RATRLVKSQQS+GKEYIS+FKLH+ VE+V + IK
Sbjct: 118 TGHSGTLDPKTSGVLVVCIERATRLVKSQQSSGKEYISVFKLHNPVESV-------LQIK 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
+ L G + P L AA ++ T ++ L+ D + G+ W+KC+AGT
Sbjct: 171 KTLESLRGALFQRPP------LIAAVKRQLRIRTIYENKLLDYDEESNIGVFWIKCEAGT 224
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVHMGL+LG G QMIELRRNRSGI SEE+GL T
Sbjct: 225 YVRTLCVHMGLMLGTGGQMIELRRNRSGITSEEEGLATL 263
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
AS KK MIK GLLDK+GKPNENTP ++ P +K
Sbjct: 386 ASTKKTMIKDGLLDKYGKPNENTPDNWKQTFYKEPIEK 423
>gi|194756825|ref|XP_001960671.1| GF11381 [Drosophila ananassae]
gi|190621969|gb|EDV37493.1| GF11381 [Drosophila ananassae]
Length = 515
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVR+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNVRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D + + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDESRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK G+PNENTP +L
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWL 411
>gi|195381389|ref|XP_002049435.1| GJ21579 [Drosophila virilis]
gi|194144232|gb|EDW60628.1| GJ21579 [Drosophila virilis]
Length = 508
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 162/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EYI+ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 54 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLDKPSNPSSHEVVAWIKKILKVEK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH VE+VAK ++
Sbjct: 114 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGPVESVAK-------VR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 167 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIR 223
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 224 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 259
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK G+PNENTP +L
Sbjct: 381 KASAKKALIAAGKLDKFGRPNENTPKEWL 409
>gi|195124820|ref|XP_002006885.1| GI21310 [Drosophila mojavensis]
gi|193911953|gb|EDW10820.1| GI21310 [Drosophila mojavensis]
Length = 507
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 164/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EYI+ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 54 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLDKPSNPSSHEVVAWIKKILKVEK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH VE+VAK ++
Sbjct: 114 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGPVESVAK-------VR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 167 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 223
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 224 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 259
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK G+PNENTP +L
Sbjct: 381 KASAKKALIAAGKLDKFGRPNENTPKEWL 409
>gi|223950515|gb|ACN29341.1| MIP05689p [Drosophila melanogaster]
Length = 534
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 164/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 82 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 141
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSA KEY++IFKLH AVE+VAK ++
Sbjct: 142 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSASKEYVAIFKLHGAVESVAK-------VR 194
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 195 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 251
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 252 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 287
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 409 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 448
>gi|289741503|gb|ADD19499.1| pseudouridine synthase [Glossina morsitans morsitans]
Length = 613
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 163/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRTNHYTPLP G SPL R I+EYI++G++NLDKPSNPSSHEVVAWIKRIL+ +K
Sbjct: 56 NFDKLNVRTNHYTPLPHGSSPLNRDIKEYIKSGFINLDKPSNPSSHEVVAWIKRILKVDK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDR TRLVKSQQSAGKEY++IFKLHS VE+V+K ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRTTRLVKSQQSAGKEYVAIFKLHSPVESVSK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D + + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDESRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM+ELRR RSGIQ+E D +VT
Sbjct: 226 TMCVHLGLILGVGGQMLELRRVRSGIQTERDNIVTM 261
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 19/83 (22%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYM----------------K 154
KAS KK +I G LDK+G+ NENTP +L KKP + K
Sbjct: 383 KASAKKALIAAGKLDKYGRANENTPKEWLTSFVDYNAKKPAAIVAPQAAWEIHPQEETRK 442
Query: 155 SNLISS---DVTLSTGIIWLKCQ 174
L S DVT++T I+ C+
Sbjct: 443 RKLSVSGQGDVTITTAIVDENCE 465
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYM 153
+AS KK +I G LDK+G+ NENTP +L KKP +
Sbjct: 485 QASAKKALIAAGKLDKYGRANENTPKEWLTSFVDYNAKKPAAI 527
>gi|195489554|ref|XP_002092788.1| GE14387 [Drosophila yakuba]
gi|194178889|gb|EDW92500.1| GE14387 [Drosophila yakuba]
Length = 508
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 162/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDENRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPA 423
>gi|194886190|ref|XP_001976568.1| GG22950 [Drosophila erecta]
gi|190659755|gb|EDV56968.1| GG22950 [Drosophila erecta]
Length = 508
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 164/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDENRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPA 423
>gi|195171175|ref|XP_002026383.1| GL19980 [Drosophila persimilis]
gi|198461398|ref|XP_002138996.1| GA24087 [Drosophila pseudoobscura pseudoobscura]
gi|194111285|gb|EDW33328.1| GL19980 [Drosophila persimilis]
gi|198137332|gb|EDY69554.1| GA24087 [Drosophila pseudoobscura pseudoobscura]
Length = 519
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 165/216 (76%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D + + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDESRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSEGDGMVTM 261
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK G+PNENTP +L
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWL 411
>gi|4406198|gb|AAD19897.1| minifly protein [Drosophila melanogaster]
Length = 508
Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 164/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYT L G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTRLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P ++ ++ + Y S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPP--LISAVKRQLRVRTVY-DSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 422
>gi|195431316|ref|XP_002063689.1| GK15777 [Drosophila willistoni]
gi|194159774|gb|EDW74675.1| GK15777 [Drosophila willistoni]
Length = 1467
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 162/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY+++G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 1012 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKSGFINLDKPSNPSSHEVVAWIKKILKVEK 1071
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH VE+VAK ++
Sbjct: 1072 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGPVESVAK-------VR 1124
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D + G+ W+ C+AG+Y+R
Sbjct: 1125 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDEKRNMGVFWVSCEAGSYIR 1181
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 1182 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 1217
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK G+PNENTP +L
Sbjct: 1339 KASAKKALIAAGKLDKFGRPNENTPKEWL 1367
>gi|321459377|gb|EFX70431.1| hypothetical protein DAPPUDRAFT_228342 [Daphnia pulex]
Length = 510
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/230 (60%), Positives = 165/230 (71%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN RTNHYTPLP G SPL+R I++YI G++NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 52 NFDKLNTRTNHYTPLPSGCSPLKRPIKDYIHGGFINLDKPSNPSSHEVVAWIKRILRCEK 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY++IFKLHSAVE+ I
Sbjct: 112 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAIFKLHSAVED-------NNQIP 164
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T ++ D + GI WL C+AGTYVR
Sbjct: 165 RALEKLTGALFQRPPLISAVKRQL---RVRTIYETKFYEYDAERNMGIYWLSCEAGTYVR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T+CVH+GLVLGVGAQM ELRR RSGIQSE++GL+T M + I + W+
Sbjct: 222 THCVHLGLVLGVGAQMAELRRVRSGIQSEKEGLMT-----MHDVIDAQWL 266
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK M+KQGLLDK GKPN+ TP +L
Sbjct: 379 KASIKKSMVKQGLLDKFGKPNDQTPKDWL 407
>gi|91093224|ref|XP_967291.1| PREDICTED: similar to AGAP004739-PA [Tribolium castaneum]
gi|270016592|gb|EFA13038.1| hypothetical protein TcasGA2_TC010569 [Tribolium castaneum]
Length = 502
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/215 (58%), Positives = 157/215 (73%), Gaps = 9/215 (4%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
FD+LNVRTNHY PLPFG SPL+R I +Y+++GY+NLDKPSNPSSHEVVAWIKRIL+ EKT
Sbjct: 56 FDRLNVRTNHYVPLPFGSSPLRREISDYVKSGYINLDKPSNPSSHEVVAWIKRILKVEKT 115
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDPK +GCLIVCI+RATRLVKSQQ+AGKEY+++FKLHS V+ + Q
Sbjct: 116 GHSGTLDPKVTGCLIVCIERATRLVKSQQAAGKEYVAVFKLHSTVQGGTPK------VLQ 169
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
GL G + P + + + T S L D + + G+ W+ C+AG+Y+RT
Sbjct: 170 GLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLFQYDESRNMGVFWVSCEAGSYIRT 226
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
CVH+GLVLGVG QM+ELRR RSGIQSE+D + T
Sbjct: 227 MCVHLGLVLGVGGQMLELRRVRSGIQSEQDQMATM 261
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+ S+KK++I +G LDK+GKPNENTP +L
Sbjct: 383 RTSQKKILIAKGQLDKYGKPNENTPKEWL 411
>gi|242019416|ref|XP_002430157.1| minifly protein, putative [Pediculus humanus corporis]
gi|212515248|gb|EEB17419.1| minifly protein, putative [Pediculus humanus corporis]
Length = 512
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 172/230 (74%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVR+NH+TPLPFG SPL+R +++YI GY+NLDKP+NPSSHE+VAWIKRIL+ EK
Sbjct: 50 NFDKLNVRSNHFTPLPFGCSPLKRELKDYISGGYINLDKPANPSSHEIVAWIKRILKVEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPKT+GCLIVCI+RATRL KSQQ+AGKEY+ IFKLHS+V++V ++
Sbjct: 110 TGHSGTLDPKTTGCLIVCIERATRLAKSQQTAGKEYVCIFKLHSSVDSVDS-------VR 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P ++ ++ + Y S LI D+ + GI W+KC+AGTYVR
Sbjct: 163 RALEKLRGPLFQRPP--LISAVKRQLRVRNIY-DSKLIEYDMEKNQGIFWVKCEAGTYVR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG QMIELRRNRSGIQSE DGLVT M + + + WV
Sbjct: 220 TMCVHLGLLLGVGGQMIELRRNRSGIQSESDGLVT-----MHDVLDAQWV 264
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 25/29 (86%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK MIKQGLLDK+GKPNE TP+ +L
Sbjct: 377 KASMKKNMIKQGLLDKYGKPNEKTPSDWL 405
>gi|301619755|ref|XP_002939254.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Xenopus
(Silurana) tropicalis]
Length = 555
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTP+P G +PL+R I EYI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 55 NFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINLDKPANPSSHEVVAWIRRILRSEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+EN + S+ +
Sbjct: 115 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNALENELQLSRALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 175 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT
Sbjct: 225 TLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTM 260
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE+TP+ + E
Sbjct: 382 KASQKKMMIQKGLLDKHGKPNESTPSGWKQE 412
>gi|83318359|gb|AAI08889.1| LOC733436 protein [Xenopus laevis]
Length = 510
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTP+P G +PL+R I EYI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 55 NFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINLDKPANPSSHEVVAWIRRILRSEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+EN + S+ +
Sbjct: 115 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNALENELQLSRALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 175 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT
Sbjct: 225 TLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTM 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGK NENTP+ +
Sbjct: 382 KASQKKMMIQKGLLDKHGKTNENTPSDW 409
>gi|348545585|ref|XP_003460260.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Oreochromis
niloticus]
Length = 500
Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 163/228 (71%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 53 NFDKLNIRTAHYTPLPSGSNPLKRNIHDYVRSGFINLDKPANPSSHEVVAWIRRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+E+ + ++
Sbjct: 113 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNAIES-------EHVLA 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL G + P +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 166 RGLETLTGALFQRPP--LIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT + F+H
Sbjct: 223 TLCVHLGLMLGVGGQMQELRRVRSGVMGEKDNLVTMHDVLDAQWQFDH 270
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY--------LAELEAAPNKKPTYMKSNLISSD 161
KAS+KKMMI++GLLDKHGKPN +TPA + ++++ P PT K + S+
Sbjct: 380 KASQKKMMIQKGLLDKHGKPNGSTPADWKDQYVDYSVSKVTGEPGDAPTKRKREVTESE 438
>gi|122936359|gb|AAI30043.1| LOC733436 protein [Xenopus laevis]
Length = 474
Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTP+P G +PL+R I EYI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 55 NFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINLDKPANPSSHEVVAWIRRILRSEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+EN + S+ +
Sbjct: 115 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNALENELQLSRALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 175 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT
Sbjct: 225 TLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTM 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGK NENTP+ +
Sbjct: 382 KASQKKMMIQKGLLDKHGKTNENTPSDW 409
>gi|167517062|ref|XP_001742872.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779496|gb|EDQ93110.1| predicted protein [Monosiga brevicollis MX1]
Length = 474
Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 128/231 (55%), Positives = 168/231 (72%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NF++LN+RT+HYTPLP G SPL+R I +Y+R+G +NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 41 NFNELNIRTSHYTPLPNGCSPLKRPIHDYVRSGVINLDKPANPSSHEVVAWIRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQ+AGKEY+SI +LHSA+E ++ +
Sbjct: 101 TGHSGTLDPKVTGCLIVCVERATRLVKSQQNAGKEYVSIVRLHSAIE-------EEKQLT 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ A + Y +S L+ D + G+ W+KC+AGTY+R
Sbjct: 154 QALEKLTGALFQRPP--LISAVKRALRVRTIY-ESKLLDFDKERNLGVFWVKCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+G VLG GA M ELRR RSGIQSE+D LVT M + + + WV+
Sbjct: 211 TLCVHLGFVLGTGAHMQELRRVRSGIQSEKDQLVT-----MHDVLDAQWVM 256
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
+A KK +I G LDK+GKPNE TP+ +L+
Sbjct: 368 RAQAKKKLIAAGKLDKYGKPNEKTPSEWLS 397
>gi|116063374|gb|AAI23285.1| LOC733436 protein [Xenopus laevis]
Length = 450
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTP+P G +PL+R I EYI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 55 NFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINLDKPANPSSHEVVAWIRRILRSEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+EN + S+ +
Sbjct: 115 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNALENELQLSRALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 175 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT
Sbjct: 225 TLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTM 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGK NENTP+ +
Sbjct: 382 KASQKKMMIQKGLLDKHGKTNENTPSDW 409
>gi|165970590|gb|AAI58494.1| LOC100145077 protein [Xenopus (Silurana) tropicalis]
Length = 502
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTP+P G +PL+R I EYI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 55 NFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINLDKPANPSSHEVVAWIRRILRSEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+A+EN + S+ +
Sbjct: 115 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNALENELQLSRALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 175 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT
Sbjct: 225 TLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTM 260
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE+TP+ + E
Sbjct: 382 KASQKKMMIQKGLLDKHGKPNESTPSGWKQE 412
>gi|395547747|ref|XP_003775182.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Sarcophilus
harrisii]
Length = 592
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPSGSNPLKREITDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E+ + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVIRLHNAIESEVQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S ++ D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMLEYDPEKRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 228 TLCVHVGLLLGVGGQMQELRRIRSGVMGEKDHMVTM 263
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMIKQGLLDKHGKPN++TP S+ A+
Sbjct: 385 KASQKKMMIKQGLLDKHGKPNDSTPTSWKAD 415
>gi|334350049|ref|XP_001374865.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Monodelphis domestica]
Length = 575
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPSGSNPLKREITDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E+ + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVIRLHNAIESEVQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S ++ D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMLEYDPEKRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 228 TLCVHVGLLLGVGGQMQELRRIRSGVMGEKDHMVTM 263
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKPN++TP ++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPNDSTPTAW 412
>gi|449677683|ref|XP_002154610.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Hydra
magnipapillata]
Length = 492
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 162/231 (70%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+P G +PL+R++++Y+ AGY+NLDKP+NPSSHEVVAW+KRILR +K
Sbjct: 46 NYDRLNVRTGHYTPIPSGSAPLKRSLKDYLAAGYINLDKPANPSSHEVVAWVKRILRVQK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDR TRLVKSQQ AGKEY+ I +LH+A+E+ K ++ M+
Sbjct: 106 TGHSGTLDPKVTGCLIVCIDRTTRLVKSQQGAGKEYVGILRLHNAIESKDKLAQAIEMLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTYVR
Sbjct: 166 GALFQR---------PPLISAVKRQLRVRTIY-ESKLLEFDQEKNLAVFWISCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVG M ELRR RSGIQSE + LVT M + + + WV
Sbjct: 216 TLCVHLGLILGVGGHMQELRRVRSGIQSENEDLVT-----MHDVLDAQWVF 261
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA +KK MI GLLDK+GKP ENTP +
Sbjct: 373 KALEKKKMIASGLLDKYGKPTENTPKDW 400
>gi|326437286|gb|EGD82856.1| centromere/microtubule-binding protein cbf5 [Salpingoeca sp. ATCC
50818]
Length = 495
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+FDKLN+R+NHYTPLP G SPL+R I +Y+R+G +NLDKP+NPSSHEVVAWI+RIL+ EK
Sbjct: 35 DFDKLNIRSNHYTPLPNGCSPLKRKIHDYVRSGVINLDKPANPSSHEVVAWIRRILKVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ+AGKEY+ + +LHSA++ ++ +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVGLVRLHSAIDG-------EVALA 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T +S L+ D GI W+KC+AGTY+R
Sbjct: 148 QALEKLTGALFQRPPLISAVKRQL---RVRTIYESKLLEYDNDRHLGIFWVKCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G +LGVG M ELRR RSGIQSE D LVT
Sbjct: 205 TLCVHLGFLLGVGGHMQELRRVRSGIQSEADNLVTM 240
>gi|330802465|ref|XP_003289237.1| hypothetical protein DICPUDRAFT_35400 [Dictyostelium purpureum]
gi|325080682|gb|EGC34227.1| hypothetical protein DICPUDRAFT_35400 [Dictyostelium purpureum]
Length = 545
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 157/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT HYTP+P G SPL+R I+EYI+ G +NLDKPSNPSSHEVVAWI+ ILR +K
Sbjct: 54 NYDQLLVRTGHYTPIPNGHSPLKRPIKEYIKYGIINLDKPSNPSSHEVVAWIRTILRVQK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEYI I +LH+A+ENV++ SK ++
Sbjct: 114 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGIVRLHNAIENVSELSKAVDTLR 173
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P ++ L + T +S LI D + G+IW+ C+AGTY+R
Sbjct: 174 GALFQR--PPQKSAVKKRL--------RVRTIHESKLIEYDPERNLGLIWVDCEAGTYIR 223
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++GVG M ELRR RSGI SE+ G+VT
Sbjct: 224 TLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGMVTM 259
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA KK MIK G LDK+GKPNE TP+ +
Sbjct: 381 KAKVKKEMIKDGKLDKYGKPNEKTPSDW 408
>gi|195996317|ref|XP_002108027.1| hypothetical protein TRIADDRAFT_19124 [Trichoplax adhaerens]
gi|190588803|gb|EDV28825.1| hypothetical protein TRIADDRAFT_19124, partial [Trichoplax
adhaerens]
Length = 487
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/230 (53%), Positives = 160/230 (69%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTPL G SPL+R I++YI+ G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 30 NYDKLNVRTGHYTPLTNGMSPLKRPIRDYIKCGFINLDKPANPSSHEVVAWIRRILRVEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEY+ + +LH A+EN A ++ +
Sbjct: 90 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYVCVIRLHEAIENEAVLARTLETLT 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D G+ W+ C+AGTY+R
Sbjct: 150 GALFQR---------PPLISAVKRQLRIRTIY-ESKLIEFDKDRHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVHMG ++G GA M ELRR RSGIQSE+DG+VT M + + + WV
Sbjct: 200 TLCVHMGYLIGCGAHMQELRRVRSGIQSEQDGMVT-----MHDVLDAQWV 244
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KKK M+ GLLDK+GKPN+NTPA +
Sbjct: 358 ALKKKKMVAAGLLDKYGKPNQNTPADW 384
>gi|452822543|gb|EME29561.1| H/ACA ribonucleoprotein complex subunit 4 [Galdieria sulphuraria]
Length = 485
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 151/229 (65%), Gaps = 34/229 (14%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT+HYTPLPFG SPL+R ++EYIR G +NLDKP NPSSHEVVAW+KRIL+ EK
Sbjct: 34 NFDKLNVRTSHYTPLPFGNSPLKRPLKEYIRYGVINLDKPGNPSSHEVVAWVKRILKVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+++ +LH
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVTVLRLH----------------- 136
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
D G+ E A + L A ++P T +S L+ D +
Sbjct: 137 ----DSLGEGGEAKLARAVDRLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDDSRHLA 192
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W++C+AGTYVRT CVH+GL+LGVGA M ELRR RSG E GLVT
Sbjct: 193 VFWIRCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGAMGENSGLVTM 241
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLST 166
ASKKK +I G LDKHGKPNENTP ++ +P + N I+ V + T
Sbjct: 364 ASKKKQLIAAGQLDKHGKPNENTPKNWF-------QIQPDFASLNRITEQVPVET 411
>gi|405975700|gb|EKC40249.1| H/ACA ribonucleoprotein complex subunit 4 [Crassostrea gigas]
Length = 498
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTP+P G SPL+R IQEY+++G++NLDKP+NPSSHEVV+W+KRILR +K
Sbjct: 49 NFDKLNVRTAHYTPIPAGYSPLKRPIQEYLKSGFINLDKPANPSSHEVVSWVKRILRVQK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEY+ IFKLHSAVE+ ++K M+
Sbjct: 109 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYVCIFKLHSAVEDEKLVAQKIEMMT 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y + + + + GI W+ C+AGTY+R
Sbjct: 169 GALFQR---------PPLISAVKRQLRIRTIY-ECKMWEYNKEDAMGIFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LGVG QM ELRR RSGI SE+ L T
Sbjct: 219 TMCVHLGLFLGVGGQMQELRRVRSGIMSEKSQLYTM 254
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KKK MI++G LDK+GKPNE TP+++
Sbjct: 377 AMKKKKMIQEGTLDKYGKPNEKTPSNW 403
>gi|9931991|emb|CAC04528.1| DYSKERIN [Mus musculus]
Length = 509
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+ VLG G QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLCFVLGSGCQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>gi|197245421|ref|NP_001127802.1| Nucleolar protein at 60B homolog [Nasonia vitripennis]
Length = 518
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL RT+ EY+++G +NLDKPSNPSSHEVVAWIKRIL+ +K
Sbjct: 46 NFDKMLTRTKHFTPLSSGSTPLHRTLSEYVQSGCINLDKPSNPSSHEVVAWIKRILKVQK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEY+++FKLHSAV+NV K I
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAVDNVKK-------IH 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y S + D + G+ + C+AG+Y+R
Sbjct: 159 QALEKLKGALFQRPP--LISAVKRQLRVRTVY-DSWFLDYDEDRNMGVFKVSCEAGSYIR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSGI SE+DGLVT
Sbjct: 216 TICVHLGLFLGTGCQMQELRRNRSGIMSEKDGLVTM 251
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
KAS+KK +I +G LDKHGKPNENTP+ +L+
Sbjct: 373 KASQKKRLIVEGKLDKHGKPNENTPSDWLS 402
>gi|260825213|ref|XP_002607561.1| hypothetical protein BRAFLDRAFT_71433 [Branchiostoma floridae]
gi|229292909|gb|EEN63571.1| hypothetical protein BRAFLDRAFT_71433 [Branchiostoma floridae]
Length = 470
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 157/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G SPL+R I++Y+R+G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 57 NYDKLNVRTGHYTPIPSGCSPLKRPIEDYVRSGFINLDKPANPSSHEVVAWIRRILRVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQ AGKEY+ + +LHSA++ + ++ +
Sbjct: 117 TGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGKEYVCVVRLHSAIDGQEELARTIEHLT 176
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D G+ W+ C+AGTY+R
Sbjct: 177 GALFQR---------PPLISAVKRQLRIRTIY-ESKLIQYDPESRLGVFWVSCEAGTYIR 226
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI SE++G+VT
Sbjct: 227 TLCVHVGLLLGVGGQMQELRRVRSGIMSEKEGMVTM 262
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS KK +IK+GLLDK+GK NE TP +
Sbjct: 384 KASLKKKLIKEGLLDKYGKANEKTPQDW 411
>gi|391342420|ref|XP_003745518.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL +RTNHYTP+P G SPL+R++++Y+ +GY+NLDKPSNPSSHEVV+WIKRIL+ EK
Sbjct: 56 NFDKLIIRTNHYTPVPQGASPLKRSLKDYLSSGYINLDKPSNPSSHEVVSWIKRILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPKTSGCL+VCIDRATRLVKSQQSAGKEY+ IF+LH E+VAK + ++
Sbjct: 116 TGHSGTLDPKTSGCLVVCIDRATRLVKSQQSAGKEYVGIFQLHEKPESVAKVYQVVEKLQ 175
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y + L+ D ++GI+W+ C+AGTYVR
Sbjct: 176 GALFQR---------PPLIAAVKRQLRVRTVY-EQKLLEYDEEKNSGIVWMSCEAGTYVR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+ G G M ELRR RSG E D +VT
Sbjct: 226 TSCVHIGLLCGTGGIMTELRRCRSGTNRETDTMVTM 261
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK++I +G LDK+GKPNE TPA+Y+
Sbjct: 384 ALAKKLLISEGKLDKYGKPNERTPANYV 411
>gi|427789457|gb|JAA60180.1| Putative h/aca ribonucleoprotein complex subunit 4 [Rhipicephalus
pulchellus]
Length = 476
Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 158/228 (69%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRTNHYTP+P G +PL+R I+EYIR+G++NLDKP NPSSHEVVAW+KRIL+ EK
Sbjct: 55 NFDKLNVRTNHYTPMPHGCNPLKREIREYIRSGFINLDKPCNPSSHEVVAWVKRILKVEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCI+R TRL KSQQSAGKEY++IFKLH + A ++ +K
Sbjct: 115 TGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYVAIFKLHQDPPSYAHVAQACEKLK 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + +A ++ + Y S L+ + + G++W+ C+AGTYVR
Sbjct: 175 GAMFQR---------PPLIAAVKRQLRIRTIY-DSKLLEFESQRNLGVLWMSCEAGTYVR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LG GA M ELRR RSGIQ E +VT + MFE+
Sbjct: 225 TLCVHIGLLLGTGAVMEELRRVRSGIQDENSNMVTMHDVLDAQWMFEN 272
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
A KKK MIK G LDK+G+PNENTP+ Y E AP
Sbjct: 383 ALKKKQMIKDGKLDKYGRPNENTPSGY---EEGAP 414
>gi|357160222|ref|XP_003578695.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Brachypodium distachyon]
Length = 584
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 126/231 (54%), Positives = 156/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R +QEY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 73 NYDRLNVRTGHYTPLPSGHSPLKRPLQEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 132
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I + H+AV N A+ +
Sbjct: 133 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPNTAR-------VA 185
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTYVR
Sbjct: 186 RALESLTGAVFQRPPLISAVKRQL---RVRTIYESKLLEHDPERHLAVFWISCEAGTYVR 242
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + S W L
Sbjct: 243 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVT-----MHDVMDSMWAL 288
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK MI +GLLDKHGKP E TPA +L
Sbjct: 401 ALKKKKMIAEGLLDKHGKPTEKTPAEWL 428
>gi|350405648|ref|XP_003487505.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Bombus
impatiens]
Length = 517
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL RT+ EYI++G +NLDKP NPSSHEVVAWIKRIL+ EK
Sbjct: 47 NFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKRILKVEK 106
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEYI++FKLHSA E++ K S+ ++
Sbjct: 107 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQALEKLR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S I D + G+ + C+AG+Y+R
Sbjct: 167 GALFQR---------PPLISAVKRQLRVRTVY-DSWFIDYDEERNMGVFRVSCEAGSYIR 216
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSG+QSE DG+VT
Sbjct: 217 TICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTM 252
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
KAS KK MI +G LDK+GKPNENTPA +LA
Sbjct: 374 KASIKKRMIIEGKLDKYGKPNENTPADWLA 403
>gi|357136276|ref|XP_003569731.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Brachypodium distachyon]
Length = 591
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/231 (54%), Positives = 156/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R +QEY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 73 NYDRLNVRTGHYTPLPSGHSPLKRPLQEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 132
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I + H+AV + A+ +
Sbjct: 133 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTAR-------VA 185
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTYVR
Sbjct: 186 RALESLTGAVFQRPPLISAVKRQL---RVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 242
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + S W L
Sbjct: 243 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVT-----MHDVMDSMWAL 288
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK MI +GLLDKHGKP E TPA +L
Sbjct: 401 ALKKKKMIAEGLLDKHGKPTEKTPAEWL 428
>gi|380013775|ref|XP_003690924.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Apis
florea]
Length = 517
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL RT+ EYI++G +NLDKP NPSSHEVVAWIKRIL+ EK
Sbjct: 47 NFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKRILKVEK 106
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEYI++FKLHSA E++ K S+ ++
Sbjct: 107 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQALEKLR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S + D + G+ + C+AG+Y+R
Sbjct: 167 GALFQR---------PPLISAVKRQLRVRTVY-DSWFLDYDEERNMGVFRVSCEAGSYIR 216
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSG+QSE DG+VT
Sbjct: 217 TICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTM 252
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
KAS KK MI +G LDK+GKPNENTPA +LA
Sbjct: 374 KASIKKRMIIEGKLDKYGKPNENTPADWLA 403
>gi|340711128|ref|XP_003394132.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4-like [Bombus terrestris]
Length = 517
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL RT+ EYI++G +NLDKP NPSSHEVVAWIKRIL+ EK
Sbjct: 47 NFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKRILKVEK 106
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEYI++FKLHSA E++ K S+ ++
Sbjct: 107 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQALEKLR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S + D + G+ + C+AG+Y+R
Sbjct: 167 GALFQR---------PPLISAVKRQLRVRTVY-DSWFVDYDEERNMGVFRVSCEAGSYIR 216
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSG+QSE DG+VT
Sbjct: 217 TICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTM 252
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
KAS KK MI +G LDK+GKPNENTPA +LA
Sbjct: 374 KASIKKRMIIEGKLDKYGKPNENTPADWLA 403
>gi|328789977|ref|XP_397244.4| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Apis
mellifera]
Length = 495
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL RT+ EYI++G +NLDKP NPSSHEVVAWIKRIL+ EK
Sbjct: 47 NFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKRILKVEK 106
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEYI++FKLHSA E++ K S+ ++
Sbjct: 107 TGHSGTLDPKGSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQALEKLR 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S + D + G+ + C+AG+Y+R
Sbjct: 167 GALFQR---------PPLISAVKRQLRVRTVY-DSWFLDYDEERNMGVFRVSCEAGSYIR 216
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSG+QSE DG+VT
Sbjct: 217 TICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTM 252
>gi|325182641|emb|CCA17096.1| H/ACA ribonucleoprotein complex subunit 4 putative [Albugo
laibachii Nc14]
Length = 467
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++ LN+RT HYTP+P SPL+R IQ+Y+R G +NLDKP+NPSSHEVVAWI+RILR +K
Sbjct: 48 NYNTLNIRTGHYTPIPCSSSPLKRNIQDYVRYGIINLDKPANPSSHEVVAWIRRILRVDK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+++ +LH+A+E+ K + +
Sbjct: 108 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVVRLHNAIESQVKLANAIETLT 167
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + G+ W+ C+AGTY+R
Sbjct: 168 GALFQR---------PPLISAVKRQLRIRTIY-QSKLIEYDEKRNLGVFWVSCEAGTYIR 217
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG M ELRR RSG SE+DG+VT
Sbjct: 218 TLCVHLGLVLGVGGHMQELRRVRSGAMSEQDGMVTM 253
>gi|156395724|ref|XP_001637260.1| predicted protein [Nematostella vectensis]
gi|156224371|gb|EDO45197.1| predicted protein [Nematostella vectensis]
Length = 392
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 161/230 (70%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT H+TPLP G SPL+R I++YI +G++NLDKP+NPSSHEVVAW++RILR EK
Sbjct: 30 NYDKLNIRTGHFTPLPNGCSPLKREIKDYISSGFINLDKPANPSSHEVVAWLRRILRVEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCID+ATRLVKSQQ AGKEY+ I +LH+A+E A+ +K +
Sbjct: 90 TGHSGTLDPKVTGCLIVCIDKATRLVKSQQGAGKEYVCIVRLHNAIEGQAELAKTIETLT 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D G+ W+ C+AGTY+R
Sbjct: 150 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDDERHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL++G+GA M ELRR RSGIQSE D + T M + + + WV
Sbjct: 200 TLCVHIGLLMGIGAHMQELRRVRSGIQSENDNMAT-----MHDVLDAQWV 244
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KA KKK +I +G LDK GKPN++TP + E
Sbjct: 357 KALKKKKLISEGKLDKFGKPNDSTPQDWNKE 387
>gi|346471023|gb|AEO35356.1| hypothetical protein [Amblyomma maculatum]
Length = 490
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 156/219 (71%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD LNVRTNHY P+P G +PL+R ++EYIR+G++NLDKP NPSSHEVVAW+KRIL+ EK
Sbjct: 54 NFDALNVRTNHYVPMPHGSNPLKRELREYIRSGFINLDKPCNPSSHEVVAWVKRILKVEK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH---SAVENVAKASKKKM 117
TGHSGTLDPK SGCLIVCI+R TRL KSQQSAGKEY++IFKLH ++ ++ +A +K
Sbjct: 114 TGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYVAIFKLHQDPASYSHIVQACEK-- 171
Query: 118 MIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGT 177
+K + + +A ++ + Y S L+ D + G++W+ C+AGT
Sbjct: 172 -LKGAMFQR---------PPLIAAVKRQLRIRTIY-DSKLLDYDSRQNMGVLWMSCEAGT 220
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG GA M ELRR RSGIQ E G+VT
Sbjct: 221 YVRTLCVHIGLLLGTGAVMEELRRVRSGIQDETSGMVTL 259
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
A KKK MIK+G LDK+G+PNE+TP+ Y E AP+
Sbjct: 382 ALKKKQMIKEGKLDKYGRPNESTPSGY---EEGAPD 414
>gi|299470748|emb|CBN79794.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 512
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/228 (55%), Positives = 153/228 (67%), Gaps = 5/228 (2%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D L R HYTPLP G SPL+R ++EYIR G +NLDKP+NPSSHEVVAWIKRILR +K
Sbjct: 58 NYDDLECRAAHYTPLPSGCSPLKRELKEYIRYGVINLDKPANPSSHEVVAWIKRILRVDK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQSAGKEY+ + + HSAV+ A ++ K+
Sbjct: 118 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDGSAVEARMKVEKA 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
GLL G + P + + + T S LI D GI W+ CQAGTYVR
Sbjct: 178 VGLLT--GALFQRPPLISAVKRQL---RIRTIYDSKLIEYDNDRHLGIFWVSCQAGTYVR 232
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL++G G M ELRR RSG+ SEE LVT +H+ T
Sbjct: 233 TLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDAQHVYDT 280
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A+KKK M+K GLLDKHG+ N +TP +
Sbjct: 391 ATKKKAMVKSGLLDKHGRENASTPKDW 417
>gi|443722429|gb|ELU11298.1| hypothetical protein CAPTEDRAFT_226101 [Capitella teleta]
Length = 507
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 159/216 (73%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVR++HYTP+P G SPL+R I++YI G++NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 52 NFDKLNVRSSHYTPIPAGCSPLKRPIKDYITTGFINLDKPSNPSSHEVVAWIKRILRVEK 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCID+ATRLVKSQQSAGKEY+ IF+LHSAVE+V K ++
Sbjct: 112 TGHSGTLDPKVTGCLIVCIDKATRLVKSQQSAGKEYVCIFRLHSAVEDVKKIYSAVETLQ 171
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S ++ D + GI+W+ CQAGTY+R
Sbjct: 172 GALFQR---------PPLISAVKRQLRVRTIY-ESKMLEYDENKNQGIVWVSCQAGTYIR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D + T
Sbjct: 222 TLCVHLGLLLGVGGQMQELRRVRSGVLSEKDAMSTM 257
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLA 140
AS+KK MIK G LDK+G+ NE+TP+ +L+
Sbjct: 380 ASRKKQMIKDGKLDKYGRKNESTPSDWLS 408
>gi|326525859|dbj|BAJ93106.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 605
Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 71 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 130
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I + H+AV + A+ +
Sbjct: 131 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTAR-------VA 183
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTYVR
Sbjct: 184 RALESLTGAVFQRPPLISAVKRQL---RVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 240
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + + W L
Sbjct: 241 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVT-----MHDVMDAMWAL 286
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK MI +GLLDKHGKP + TPA +L
Sbjct: 399 ALKKKKMIAEGLLDKHGKPTDKTPAEWL 426
>gi|326513743|dbj|BAJ87890.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 605
Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 71 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 130
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I + H+AV + A+ +
Sbjct: 131 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTAR-------VA 183
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTYVR
Sbjct: 184 RALESLTGAVFQRPPLISAVKRQL---RVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 240
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + + W L
Sbjct: 241 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVT-----MHDVMDAMWAL 286
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK MI +GLLDKHGKP + PA +L
Sbjct: 399 ALKKKKMIAEGLLDKHGKPTDKMPAEWL 426
>gi|224090025|ref|XP_002308911.1| predicted protein [Populus trichocarpa]
gi|222854887|gb|EEE92434.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/230 (53%), Positives = 156/230 (67%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 57 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGIMNLDKPANPSSHEVVAWIKRILRVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ I +LH V +VAK ++ +
Sbjct: 117 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHDKVPDVAKVARALETLT 176
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 177 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDADRHLVVFWISCEAGTYVR 226
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + + WV
Sbjct: 227 TMCVHLGLILGVGAHMQELRRVRSGILGEKDNMVT-----MHDVMDAQWV 271
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
+AS KK +I +G LDKHGKPNENTP ++ L P
Sbjct: 384 RASIKKKLISEGKLDKHGKPNENTPHEWMRNLVLPP 419
>gi|341878882|gb|EGT34817.1| hypothetical protein CAEBREN_15909 [Caenorhabditis brenneri]
Length = 442
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPP--LISAVKRQLRIRTVY-ENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL+LG G QM ELRRNRSGI E + +VT ++I+ T
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYILDT 263
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ASKKK M+K GLLDK GKPN +TP S+ E
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNSSTPKSWAKE 403
>gi|383852398|ref|XP_003701715.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Megachile rotundata]
Length = 515
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD++ RT H+TPL G +PL R++ EYI++G +NLDKP NPSSHEVVAWIKRIL+ EK
Sbjct: 46 NFDRMLTRTKHFTPLTSGSTPLHRSLSEYIKSGCINLDKPCNPSSHEVVAWIKRILKVEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEY+++FKLHSA E++ K S+ ++
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAPESLQKVSQALEKLR 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S + D + G+ + C+AG+Y+R
Sbjct: 166 GALFQR---------PPLISAVKRQLRVRTVY-DSWFLDYDNERNMGVFRVSCEAGSYIR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G QM ELRRNRSG+QSE+DG+VT
Sbjct: 216 TICVHLGLFLGTGCQMQELRRNRSGVQSEKDGMVTM 251
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLA 140
KAS KK MI +G LDK+GKPNENTP+ +LA
Sbjct: 373 KASIKKRMIIEGKLDKYGKPNENTPSDWLA 402
>gi|307172272|gb|EFN63777.1| H/ACA ribonucleoprotein complex subunit 4 [Camponotus floridanus]
Length = 514
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL R++ EYI++G +NLDKP NPSSHEVVAWIKRILR EK
Sbjct: 45 NFDKMLTRTKHFTPLTSGSTPLHRSLSEYIKSGCINLDKPCNPSSHEVVAWIKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEY+++FKLHSA E++ K +K
Sbjct: 105 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAPESILK-------VK 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L HG + P + + + T ++ L+ + + G+ + C+AG+Y+R
Sbjct: 158 QSLEKLHGALFQRPPLISAVKRQL---RVRTVYENELLDYNKETNMGVFRVSCEAGSYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL +G GA M ELRR RSG+QSE+D +VT
Sbjct: 215 TMCVHLGLYVGTGANMQELRRIRSGVQSEKDAMVTM 250
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KA +KK MI +G LDK+GKPNENTP +L
Sbjct: 372 KALQKKRMILEGTLDKYGKPNENTPTGWL 400
>gi|308497718|ref|XP_003111046.1| hypothetical protein CRE_04622 [Caenorhabditis remanei]
gi|308242926|gb|EFO86878.1| hypothetical protein CRE_04622 [Caenorhabditis remanei]
Length = 444
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPP--LISAVKRQLRIRTVY-ENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL+LG G QM ELRRNRSGI E + +VT ++++ T
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ASKKK M+K GLLDK GKPN++TP S+ E
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNDSTPKSWAKE 403
>gi|323347402|gb|EGA81673.1| Cbf5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 471
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|115473585|ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group]
gi|23237811|dbj|BAC16386.1| putative centromere/microtubule binding protein [Oryza sativa
Japonica Group]
gi|113611927|dbj|BAF22305.1| Os07g0636000 [Oryza sativa Japonica Group]
gi|125559298|gb|EAZ04834.1| hypothetical protein OsI_27012 [Oryza sativa Indica Group]
gi|125601221|gb|EAZ40797.1| hypothetical protein OsJ_25275 [Oryza sativa Japonica Group]
gi|215734843|dbj|BAG95565.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 600
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R I EY+R G +NLDKPSNPSSHEVVAWIKR+LR +K
Sbjct: 72 NYDRLNVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDK 131
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 132 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 191
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + P + L + T +S L+ D + W+ C+AGTYVR
Sbjct: 192 GAVFQR--PPLISAVKRQL--------RVRTIYESKLLEHDADRHLAVFWISCEAGTYVR 241
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 242 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 277
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 13/62 (20%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY-------------LAELEAAPNKKPTYMKSNLI 158
A KKK M+ +GLLDKHGKPNE TPA + +A + AAP + + +++
Sbjct: 400 ALKKKKMVAEGLLDKHGKPNEKTPAEWIRNVALPTGGDAMIASIAAAPEEAKVKAEQDVV 459
Query: 159 SS 160
++
Sbjct: 460 AT 461
>gi|328872555|gb|EGG20922.1| pseudouridine synthase family protein [Dictyostelium fasciculatum]
Length = 554
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 159/229 (69%), Gaps = 14/229 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G SPL+R I EY++ G +NLDKPSNPSSHEVV+WIK+IL+ K
Sbjct: 48 NYDQLLVRTGHFTPIPTGHSPLKRPIAEYVKYGIINLDKPSNPSSHEVVSWIKKILKVNK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEY+ I +LH+A+E+V+ + +
Sbjct: 108 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYMGIVRLHNAIEDVSDLQRAVETLT 167
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L +P E + + T +S+L+ D + G+IW+ C+AGTY+R
Sbjct: 168 GALFQ---RPPEKSAVKKRLRVR-------TIRESSLVEYDKERNLGLIWVDCEAGTYIR 217
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEHI 225
T CVH+GL++GVG M ELRR RSGI SE+ G+VT +H FE++
Sbjct: 218 TLCVHIGLLMGVGGHMQELRRVRSGIMSEKVGMVTMHDVKDAQHEFENL 266
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK MIK G LDK G+PNE TP+++
Sbjct: 376 AKTKKTMIKDGKLDKFGQPNEATPSNW 402
>gi|7378766|emb|CAB85492.1| putative kinetochore protein [Hordeum vulgare subsp. vulgare]
Length = 405
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 71 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 130
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I + H+AV + A+ +
Sbjct: 131 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTAR-------VA 183
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTYVR
Sbjct: 184 RALESLTGAVFQRPPLISAVKRQL---RVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 240
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVGA M ELRR RSGI E+D +VT M + + + W L
Sbjct: 241 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVT-----MHDVMDAMWAL 286
>gi|268574684|ref|XP_002642321.1| Hypothetical protein CBG18316 [Caenorhabditis briggsae]
gi|67460235|sp|Q60YA8.1|DKC1_CAEBR RecName: Full=Putative H/ACA ribonucleoprotein complex subunit 4
Length = 445
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDERK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPP--LISAVKRQLRIRTVY-ENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G QM ELRRNRSGI E + +VT
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTM 251
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ASKKK M+K GLLDK GKPN TP S+ E
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNITTPKSWAKE 403
>gi|225440338|ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
vinifera]
Length = 586
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 157/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 61 NYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVEK 120
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHS+V +VAK ++ +
Sbjct: 121 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVAKVARALETLT 180
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 181 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDPDRHLVVFWISCEAGTYVR 230
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI E+D +VT M + + + WV
Sbjct: 231 TLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT-----MHDVMDAQWV 275
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+A+ KK +I +G L+KHGKPNENTP+ +L
Sbjct: 388 RAAMKKKLITEGKLNKHGKPNENTPSEWL 416
>gi|349579890|dbj|GAA25051.1| K7_Cbf5p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 486
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|256274339|gb|EEU09244.1| Cbf5p [Saccharomyces cerevisiae JAY291]
gi|259148167|emb|CAY81414.1| Cbf5p [Saccharomyces cerevisiae EC1118]
gi|323303844|gb|EGA57626.1| Cbf5p [Saccharomyces cerevisiae FostersB]
gi|323336447|gb|EGA77714.1| Cbf5p [Saccharomyces cerevisiae Vin13]
gi|323353763|gb|EGA85618.1| Cbf5p [Saccharomyces cerevisiae VL3]
gi|365764025|gb|EHN05550.1| Cbf5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392297685|gb|EIW08784.1| Cbf5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 486
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|190405245|gb|EDV08512.1| major low affinity 55 kDa centromere/microtubule binding protein
[Saccharomyces cerevisiae RM11-1a]
Length = 477
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|151941019|gb|EDN59399.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 483
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|6323204|ref|NP_013276.1| pseudouridine synthase CBF5 [Saccharomyces cerevisiae S288c]
gi|461698|sp|P33322.1|CBF5_YEAST RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Centromere-binding factor 5; AltName:
Full=Centromere/microtubule-binding protein CBF5;
AltName: Full=H/ACA snoRNP protein CBF5; AltName:
Full=Small nucleolar RNP protein CBF5; AltName:
Full=p64'
gi|311097|gb|AAA34473.1| centromere/microtubule binding protein [Saccharomyces cerevisiae]
gi|577203|gb|AAB67463.1| Cbf5p: centromere/microtubule binding protein [Saccharomyces
cerevisiae]
gi|285813599|tpg|DAA09495.1| TPA: pseudouridine synthase CBF5 [Saccharomyces cerevisiae S288c]
Length = 483
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|241998150|ref|XP_002433718.1| pseudouridine synthase, putative [Ixodes scapularis]
gi|215495477|gb|EEC05118.1| pseudouridine synthase, putative [Ixodes scapularis]
Length = 407
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/210 (56%), Positives = 153/210 (72%), Gaps = 10/210 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRTNHY P+P G SPL+R ++EYIR+G++NLDKP NPSSHEVVAW+KRIL+ EK
Sbjct: 51 NFDKLNVRTNHYVPMPHGSSPLKRELREYIRSGFINLDKPCNPSSHEVVAWVKRILKVEK 110
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCI+R+TRLVKSQQSAGKEY++IFKLH ++ + + +K
Sbjct: 111 TGHSGTLDPKVSGCLIVCIERSTRLVKSQQSAGKEYVAIFKLHEDPKSEREVLQACEKLK 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ + T + G++W+ C+AGTYVR
Sbjct: 171 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFNKTNNMGVLWVSCEAGTYVR 220
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
T CVH+GLVLG G M ELRR RSGIQ E+
Sbjct: 221 TLCVHLGLVLGTGGVMQELRRVRSGIQDEK 250
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A +KK MIK+G LDKHG+PN+NTP Y
Sbjct: 381 AIRKKQMIKEGKLDKHGRPNDNTPEGY 407
>gi|115453197|ref|NP_001050199.1| Os03g0370500 [Oryza sativa Japonica Group]
gi|12039350|gb|AAG46137.1|AC082644_19 putative centromere/microtubule binding protein [Oryza sativa
Japonica Group]
gi|108708379|gb|ABF96174.1| H/ACA ribonucleoprotein complex subunit 4, putative, expressed
[Oryza sativa Japonica Group]
gi|113548670|dbj|BAF12113.1| Os03g0370500 [Oryza sativa Japonica Group]
gi|215693252|dbj|BAG88634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 591
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R I EY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 76 NYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 135
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 136 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 195
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + P + L + T +S L+ D + W+ C+AGTYVR
Sbjct: 196 GAVFQR--PPLISAVKRQL--------RVRTIYESKLLEHDADRHLAVFWISCEAGTYVR 245
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E D +VT
Sbjct: 246 TLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTM 281
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK M+ +GLLDKHGKPNE TP+ +L
Sbjct: 404 ALKKKKMVAEGLLDKHGKPNEKTPSEWL 431
>gi|17553978|ref|NP_499370.1| Protein K01G5.5 [Caenorhabditis elegans]
gi|3914150|sp|O17919.1|DKC1_CAEEL RecName: Full=Putative H/ACA ribonucleoprotein complex subunit 4
gi|3924791|emb|CAB07244.1| Protein K01G5.5 [Caenorhabditis elegans]
Length = 445
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 151/228 (66%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPPLISAVKRQL---RIRTVYENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL+LG G QM ELRRNRSGI E + +VT ++++ T
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
ASKKK M+K GLLDK GKPN+ TP S+ E KK
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNDTTPKSWAKEYVQTSTKK 411
>gi|361131882|pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
gi|361132369|pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T +SNLI D + G+ W C+AGTY+R
Sbjct: 141 RSLENLTGALFQRPPLISAVKRQL---RVRTIYESNLIEFDNKRNLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|323308015|gb|EGA61269.1| Cbf5p [Saccharomyces cerevisiae FostersO]
Length = 489
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|255720224|ref|XP_002556392.1| KLTH0H12078p [Lachancea thermotolerans]
gi|238942358|emb|CAR30530.1| KLTH0H12078p [Lachancea thermotolerans CBS 6340]
Length = 484
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SP +R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPTGSSPHKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL + G + P + + + T SNLI D + G+ W C+AGTY+R
Sbjct: 140 RGLENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDTNRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTL 232
>gi|242056883|ref|XP_002457587.1| hypothetical protein SORBIDRAFT_03g009870 [Sorghum bicolor]
gi|241929562|gb|EES02707.1| hypothetical protein SORBIDRAFT_03g009870 [Sorghum bicolor]
Length = 584
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 72 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLDKPSNPSSHEVVAWIKRILRAEK 131
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 132 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 191
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + P + L + T +S L+ D + W+ C+AGTYVR
Sbjct: 192 GAVFQR--PPLISAVKRQL--------RVRTIYESKLLEHDPERHLAVFWISCEAGTYVR 241
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 242 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 277
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK +I +GLLDKHGKPNE TP +L
Sbjct: 400 ALKKKKLIAEGLLDKHGKPNEKTPTEWL 427
>gi|406605131|emb|CCH43424.1| H/ACA ribonucleoprotein complex subunit 4 [Wickerhamomyces
ciferrii]
Length = 483
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T SNLI D G+ W C+AGTY+R
Sbjct: 140 RSLENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRGLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG +E D LVT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTL 232
>gi|281212633|gb|EFA86793.1| pseudouridine synthase family protein [Polysphondylium pallidum
PN500]
Length = 572
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 151/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT HYTP+P G SPL+R I++Y+R G +NLDKPSNPSSHEVV+W+K IL+ EK
Sbjct: 42 NYDQLLVRTGHYTPIPSGNSPLKRPIKDYVRYGIINLDKPSNPSSHEVVSWVKNILKVEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEY+ I +LHSA+++ +K +
Sbjct: 102 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYMGIVRLHSAIDDTNDLAKAVGTLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L +P E + + T +S L+ D + G+IW+ C+AGTY+R
Sbjct: 162 GALFQ---RPPEKSAVKKRLRVR-------TIHQSKLLEYDAERNLGLIWVDCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI SE+ +VT
Sbjct: 212 TLCVHIGLLLGVGGHMQELRRVRSGIMSEKSNMVTM 247
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA KK MI+ G LDK GKPNENTP+ +
Sbjct: 369 KAKVKKEMIRDGKLDKFGKPNENTPSDW 396
>gi|401624599|gb|EJS42654.1| cbf5p [Saccharomyces arboricola H-6]
Length = 482
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 88 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T +SNLI D + G+ W C+AGTY+R
Sbjct: 141 RSLENLTGALFQRPPLISAVKRQL---RVRTIYESNLIEFDNKRNLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
>gi|414876855|tpg|DAA53986.1| TPA: hypothetical protein ZEAMMB73_001838 [Zea mays]
Length = 579
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 69 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLDKPSNPSSHEVVAWIKRILRAEK 128
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 129 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 188
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 189 GAVFQR---------PPLISAVKRQLRVRTIY-ESKLLEHDPERHLAVFWISCEAGTYVR 238
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 239 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 274
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK ++ +GLLDKHGKPNE TPA +L
Sbjct: 397 ALKKKKLVAEGLLDKHGKPNEKTPAEWL 424
>gi|428176248|gb|EKX45133.1| hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712]
Length = 468
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT HYTP+P G SPL+R I EY+R G +NLDKP+NPSSHEVVAWI+RILR +K
Sbjct: 41 NYDKLNIRTGHYTPIPNGCSPLKRPILEYVRYGVINLDKPANPSSHEVVAWIRRILRVDK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQ AGKEY+SI +LH A+E+ K +K +K
Sbjct: 101 TGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGKEYVSIARLHGAIESENKFAKALEKLK 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S +I D + G+ W+ C+AGTYVR
Sbjct: 161 GAIFQR---------PPLISAVKRQLRIRTIY-ESKMIEFDKERNLGVFWISCEAGTYVR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG +E D L+T
Sbjct: 211 TMCVHIGLLLGVGGHMQELRRVRSGALTEHDNLMTM 246
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A KK MI G LDK+G+PN NTP+++
Sbjct: 368 QAKAKKQMIIDGKLDKYGRPNANTPSNW 395
>gi|66812658|ref|XP_640508.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
gi|74855240|sp|Q54T81.1|DKC1_DICDI RecName: Full=Probable H/ACA ribonucleoprotein complex subunit 4
gi|60468522|gb|EAL66526.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
Length = 540
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L+VRT HYTP+P G SPL+R I+EY++ G +NLDKPSNPSSHEVVAWI+ ILR K
Sbjct: 42 NYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEYI I +LH A+E + SK +
Sbjct: 102 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L +P + + + N S L+ D + G+IW+ C+AGTY+R
Sbjct: 162 GALFQ---RPPQKSAVKKRLRVRTIHN-------SKLLEFDPERNLGLIWVDCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++GVG M ELRR RSGI SE+ G VT
Sbjct: 212 TLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTM 247
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA KK MIK G LDK GKPNE TP+ +
Sbjct: 369 KAKVKKEMIKDGKLDKFGKPNEKTPSDW 396
>gi|307209198|gb|EFN86305.1| H/ACA ribonucleoprotein complex subunit 4 [Harpegnathos saltator]
Length = 514
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL +G +PL R + EYI++G +NLDKP NPSSHEVVAWIK+ILR EK
Sbjct: 45 NFDKMLTRTKHFTPLLYGSTPLNRNLSEYIKSGCINLDKPCNPSSHEVVAWIKKILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEY+++FKLHSA E++ K I+
Sbjct: 105 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAPESLQK-------IQ 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T S L+ D G+ + C+AG+Y+R
Sbjct: 158 QALEKLRGALFQRPPIISAVKRQL---RVRTVYDSTLLDYDSARHMGVFQVSCEAGSYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G M ELRR RSGIQSE D +VT
Sbjct: 215 TLCVHLGLFLGTGCHMQELRRIRSGIQSENDNMVTM 250
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
K+S KK MI +G LDK+GKPNENTPA +L +PT
Sbjct: 372 KSSTKKRMIIEGKLDKYGKPNENTPAEWLENYTYYSGSEPT 412
>gi|255564866|ref|XP_002523427.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223537377|gb|EEF39006.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 581
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 155/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 38 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LH V +VAK ++ +
Sbjct: 98 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALETLT 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 158 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDPDRHLVVFWISCEAGTYVR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVG M ELRR RSGI E+D +VT M + + + WV
Sbjct: 208 TMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT-----MHDVMDAQWVF 253
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
KAS KK +I +G LDKHGKPNENTP ++ L A P
Sbjct: 365 KASMKKKLIAEGKLDKHGKPNENTPQEWMRNLVALP 400
>gi|213511644|ref|NP_001133521.1| dyskerin [Salmo salar]
gi|209154338|gb|ACI33401.1| H/ACA ribonucleoprotein complex subunit 4 [Salmo salar]
Length = 522
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 157/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R IQ+Y+R G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 56 NFDKLNIRTAHYTPLPNGSNPLKRNIQDYVRTGFINLDKPANPSSHEVVAWIRRILRVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQSAGKEY+ I +LH+A+EN + +
Sbjct: 116 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVGIVRLHNAIEN-------EHTLA 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+G+ G + P +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 169 RGIETLTGALFQRPP--LIAAVKRQLRVRTVY-ESKLIEYDPERRLGIFWVSCEAGTYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E D LVT
Sbjct: 226 TLCVHLGLLLGVGGQMQELRRVRSGVLGERDNLVTM 261
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDK GK N++TP+ +
Sbjct: 383 KASQKKMMIQKGLLDKRGKANDSTPSDW 410
>gi|308080175|ref|NP_001183905.1| uncharacterized protein LOC100502498 [Zea mays]
gi|238015364|gb|ACR38717.1| unknown [Zea mays]
gi|413947018|gb|AFW79667.1| hypothetical protein ZEAMMB73_071792 [Zea mays]
Length = 583
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 71 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGIINLDKPSNPSSHEVVAWIKRILRVEK 130
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 131 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 190
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 191 GAVFQR---------PPLISAVKRQLRVRTIY-ESKLLEHDPERHLAVFWISCEAGTYVR 240
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 241 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 276
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK ++ +GLLDKHGKPNE TP +L
Sbjct: 399 ALKKKKLVAEGLLDKHGKPNEKTPTEWL 426
>gi|414887790|tpg|DAA63804.1| TPA: hypothetical protein ZEAMMB73_356063 [Zea mays]
Length = 575
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 68 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLDKPSNPSSHEVVAWIKRILRAEK 127
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 128 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 187
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 188 GAVFQR---------PPLISAVKRQLRVRTIY-ESKLLEHDPERHLAVFWISCEAGTYVR 237
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 238 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 273
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK M+ +GLLDKHGKPNE TPA +L
Sbjct: 396 ALKKKKMVAEGLLDKHGKPNEKTPAEWL 423
>gi|50552986|ref|XP_503903.1| YALI0E13486p [Yarrowia lipolytica]
gi|49649772|emb|CAG79496.1| YALI0E13486p [Yarrowia lipolytica CLIB122]
Length = 485
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 151/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 33 NYDKLLVRSGHYTPIPTGCSPLKRDLKSYIASGVINLDKPSNPSSHEVVAWIKRILRCEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+E+ +K+M
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALED-----EKEMA-- 145
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL + G + P + + + T S L+ D G+ W C+AGTY+R
Sbjct: 146 RGLENLTGALFQRPPLISAVKRQL---RVRTIYDSKLLEFDNDRHLGVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E DG+VT
Sbjct: 203 TLCVHLGMLLGVGGHMQELRRVRSGALDESDGMVTL 238
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPA----SYLAELEAAPNKKP 150
A++KK + G LDK+G+PNE+TPA SY+ E P KP
Sbjct: 361 ATEKKKLKADGKLDKYGRPNESTPADWKKSYVDHTEDEPVTKP 403
>gi|414876856|tpg|DAA53987.1| TPA: hypothetical protein ZEAMMB73_001838 [Zea mays]
Length = 308
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 69 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLDKPSNPSSHEVVAWIKRILRAEK 128
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 129 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 188
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 189 GAVFQR---------PPLISAVKRQLRVRTIY-ESKLLEHDPERHLAVFWISCEAGTYVR 238
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 239 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 274
>gi|242051008|ref|XP_002463248.1| hypothetical protein SORBIDRAFT_02g040540 [Sorghum bicolor]
gi|241926625|gb|EER99769.1| hypothetical protein SORBIDRAFT_02g040540 [Sorghum bicolor]
Length = 586
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + E++R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 69 NYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLDKPSNPSSHEVVAWIKRILRAEK 128
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+AV + A+ ++ +
Sbjct: 129 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALT 188
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 189 GAVFQR---------PPLISAVKRQLRVRTIY-ESKLLEHDPERHLAVFWISCEAGTYVR 238
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E+D +VT
Sbjct: 239 TLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTM 274
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELE 143
A KKK MI +GLLDKHGKPNE TPA +L +E
Sbjct: 397 ALKKKKMIAEGLLDKHGKPNEKTPAEWLRNVE 428
>gi|332022422|gb|EGI62730.1| H/ACA ribonucleoprotein complex subunit 4 [Acromyrmex echinatior]
Length = 517
Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 152/217 (70%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL R++ EYI++G +NLDKP NPSSHEVVAWIK+ILR EK
Sbjct: 45 NFDKMLTRTKHFTPLTSGSTPLNRSLSEYIKSGCINLDKPCNPSSHEVVAWIKKILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQSAGKEY+++FKLHSA E+V K +
Sbjct: 105 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAAESVQK-------VN 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y S + D + GI + C+AG+Y+R
Sbjct: 158 QALEKLRGALFQRPP--LISAVKRQLRVRTVY-DSWFLDYDQERNMGIFRVSCEAGSYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFR 217
T CVH+GL LG G M ELRR+RSG+ SE+DG+VT +
Sbjct: 215 TMCVHLGLFLGTGCHMQELRRSRSGVLSEQDGMVTMQ 251
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK M+ +GLLDK+GKPNE TP +
Sbjct: 372 KASQKKRMVAEGLLDKYGKPNEKTPPEW 399
>gi|432951236|ref|XP_004084763.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Oryzias
latipes]
Length = 499
Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 53 NFDKLNVRTGHYTPLPNGSNPLKRNIADYVRSGFINLDKPANPSSHEVVAWIRRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH+AVEN ++ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNAVENQHALARALETLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNMVTM 258
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA++KK MI++GLLDKHGKPN +TP +
Sbjct: 380 KATQKKAMIQKGLLDKHGKPNGSTPQDW 407
>gi|363748258|ref|XP_003644347.1| hypothetical protein Ecym_1291 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887979|gb|AET37530.1| hypothetical protein Ecym_1291 [Eremothecium cymbalariae
DBVPG#7215]
Length = 447
Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPNGASPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKELG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T SNLI D + G+ W C+AGTY+R
Sbjct: 140 RALENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTL 232
>gi|226955362|gb|ACO95357.1| dyskeratosis congenita 1, dyskerin (predicted) [Dasypus
novemcinctus]
Length = 512
Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPSGSNPLKREIADYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMIKQGLLDKHGKP ++TP +++ E
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDSTPTAWMQE 415
>gi|390362451|ref|XP_003730157.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 2
[Strongylocentrotus purpuratus]
Length = 562
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 164/230 (71%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT HYTPLP G SPL+R I+EY+ +G++NLDKP+NPSSHEVV+W+K+ILR EK
Sbjct: 51 NYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINLDKPANPSSHEVVSWVKKILRVEK 110
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH A+EN +K +K +
Sbjct: 111 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVCIVRLHDAIENQSKLAKAIETLT 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 171 GALFQR---------PPLISAVKRQLRVRTIY-ESKLIEYDPQRHLGIFWVSCEAGTYIR 220
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG QM ELRR RSGIQSE++ LVT M + + + WV
Sbjct: 221 TLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVT-----MHDVLDAQWV 265
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK MIKQG LDKHGK N TP ++
Sbjct: 378 KASMKKTMIKQGKLDKHGKANAETPKDWI 406
>gi|390362447|ref|XP_003730156.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 1
[Strongylocentrotus purpuratus]
Length = 562
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 164/230 (71%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT HYTPLP G SPL+R I+EY+ +G++NLDKP+NPSSHEVV+W+K+ILR EK
Sbjct: 51 NYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINLDKPANPSSHEVVSWVKKILRVEK 110
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH A+EN +K +K +
Sbjct: 111 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVCIVRLHDAIENQSKLAKAIETLT 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 171 GALFQR---------PPLISAVKRQLRVRTIY-ESKLIEYDPQRHLGIFWVSCEAGTYIR 220
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG QM ELRR RSGIQSE++ LVT M + + + WV
Sbjct: 221 TLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVT-----MHDVLDAQWV 265
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK MIKQG LDKHGK N TP ++
Sbjct: 378 KASMKKTMIKQGKLDKHGKANAETPKDWI 406
>gi|390362449|ref|XP_789483.3| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 3
[Strongylocentrotus purpuratus]
Length = 562
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 164/230 (71%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT HYTPLP G SPL+R I+EY+ +G++NLDKP+NPSSHEVV+W+K+ILR EK
Sbjct: 51 NYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINLDKPANPSSHEVVSWVKKILRVEK 110
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH A+EN +K +K +
Sbjct: 111 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVCIVRLHDAIENQSKLAKAIETLT 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 171 GALFQR---------PPLISAVKRQLRVRTIY-ESKLIEYDPQRHLGIFWVSCEAGTYIR 220
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG QM ELRR RSGIQSE++ LVT M + + + WV
Sbjct: 221 TLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVT-----MHDVLDAQWV 265
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK MIKQG LDKHGK N TP ++
Sbjct: 378 KASMKKTMIKQGKLDKHGKANAETPKDWI 406
>gi|403217428|emb|CCK71922.1| hypothetical protein KNAG_0I01310 [Kazachstania naganishii CBS
8797]
Length = 480
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ ++ +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRQLETLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D + G+ W C+AGTY+R
Sbjct: 147 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSENDEMVTL 232
>gi|367010868|ref|XP_003679935.1| hypothetical protein TDEL_0B05950 [Torulaspora delbrueckii]
gi|359747593|emb|CCE90724.1| hypothetical protein TDEL_0B05950 [Torulaspora delbrueckii]
Length = 477
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPVGSSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T SNLI D + G+ W C+AGTY+R
Sbjct: 140 RSLENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSENDDMVTL 232
>gi|338729701|ref|XP_003365960.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 2
[Equus caballus]
Length = 522
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 60 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 119
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 120 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 179
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 180 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 229
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 230 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 265
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP E+TP ++ E
Sbjct: 387 KASQKRLMIKQGLLDKHGKPTESTPVAWTQE 417
>gi|301791932|ref|XP_002930934.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Ailuropoda melanoleuca]
Length = 507
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E ++ S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGSQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 415
>gi|217416474|ref|NP_001136140.1| H/ACA ribonucleoprotein complex subunit 4 [Sus scrofa]
gi|213688833|gb|ACJ53932.1| dyskeratosis congenita 1 [Sus scrofa]
Length = 522
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 179 GALFQR---------PPLIAAVKRQLRVRTVY-ESKMIEFDPERRLGIFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 264
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+K++MIKQGLLDKHGKP ++TPA++
Sbjct: 386 KASQKRLMIKQGLLDKHGKPTDSTPAAW 413
>gi|449499294|ref|XP_004176533.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4 [Taeniopygia guttata]
Length = 475
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 16 NFDKLNVRTAHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 75
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 76 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 135
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 136 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 185
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 186 TLCVHLGLLLGVGGQMQELRRVRSGILGETDNMVTM 221
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE+TP S+ E
Sbjct: 343 KASQKKMMIQKGLLDKHGKPNESTPESWKME 373
>gi|149758940|ref|XP_001499071.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 1
[Equus caballus]
Length = 510
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP E+TP ++ E
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTESTPVAWTQE 415
>gi|366999504|ref|XP_003684488.1| hypothetical protein TPHA_0B03820 [Tetrapisispora phaffii CBS 4417]
gi|357522784|emb|CCE62054.1| hypothetical protein TPHA_0B03820 [Tetrapisispora phaffii CBS 4417]
Length = 478
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPSGSAPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKELG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL + G + P + + + T SNLI D + G+ W C+AGTY+R
Sbjct: 140 RGLENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALGESDNMVTL 232
>gi|197215692|gb|ACH53081.1| H/ACA ribonucleoprotein complex subunit 4 (predicted) [Otolemur
garnettii]
Length = 523
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPSGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP +TPA++ E
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTNSTPATWKEE 415
>gi|74009203|ref|XP_549382.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Canis lupus
familiaris]
Length = 517
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTDSTPATWMQE 415
>gi|348552726|ref|XP_003462178.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cavia
porcellus]
Length = 513
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDSTPAAWKQE 415
>gi|255619323|ref|XP_002540014.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223500118|gb|EEF22369.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 264
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 155/231 (67%), Gaps = 15/231 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 38 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LH V +VAK ++ +
Sbjct: 98 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALETLT 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 158 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDPDRHLVVFWISCEAGTYVR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
T CVH+GL+LGVG M ELRR RSGI E+D +VT M + + + WV
Sbjct: 208 TMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT-----MHDVMDAQWVF 253
>gi|395861029|ref|XP_003802796.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Otolemur
garnettii]
Length = 513
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPSGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP +TPA++ E
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTNSTPATWKEE 415
>gi|335775320|gb|AEH58532.1| H/ACA ribonucleoprotein complex subunit-like protein, partial
[Equus caballus]
Length = 507
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 46 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 106 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 166 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 216 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 251
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP E+TP ++ E
Sbjct: 373 KASQKRLMIKQGLLDKHGKPTESTPVAWTQE 403
>gi|355684038|gb|AER97272.1| dyskeratosis congenita 1, dyskerin [Mustela putorius furo]
Length = 532
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 83 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 142
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LHSA+E + S+ +
Sbjct: 143 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHSAIEGGTQLSRALETLT 202
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 203 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 252
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 253 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 288
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 410 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 440
>gi|157427916|ref|NP_001098865.1| H/ACA ribonucleoprotein complex subunit 4 [Bos taurus]
gi|157278927|gb|AAI34582.1| DKC1 protein [Bos taurus]
gi|296471114|tpg|DAA13229.1| TPA: dyskerin [Bos taurus]
Length = 506
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 415
>gi|215983076|ref|NP_001135985.1| H/ACA ribonucleoprotein complex subunit 4 [Ovis aries]
gi|213688835|gb|ACJ53933.1| dyskeratosis congenita 1 [Ovis aries]
Length = 506
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TP ++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPTTWTQE 415
>gi|397574046|gb|EJK48998.1| hypothetical protein THAOC_32164 [Thalassiosira oceanica]
Length = 453
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 156/228 (68%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L++RT+HYTP+P G SPL R ++++I +G +NLDKP+NPSSHEVV+WIKRILR EK
Sbjct: 77 NYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEK 136
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVK+QQSAGKEYI + +LHSA+++ K + +
Sbjct: 137 TGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAIDDNKKLHRAVETLT 196
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + GI W+ C+AGTYVR
Sbjct: 197 GALFQR---------PPLISAVKRQLRIRTIY-ESKLIEYDDQRNLGIFWVSCEAGTYVR 246
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL++G G M ELRR RSG+ +E+D LVT +H+ T
Sbjct: 247 TLCVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVFDT 294
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 110 AKASKKKMMIKQGLLDKHGKPNENTPASYL 139
A A++KK +IK+G LD++GK NE TP +L
Sbjct: 403 AMATRKKALIKEGKLDRYGKVNEKTPKDFL 432
>gi|238815023|gb|ACR56708.1| dyskeratosis congenita 1 [Ovis aries]
Length = 506
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TP ++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPTTWTQE 415
>gi|440902919|gb|ELR53649.1| H/ACA ribonucleoprotein complex subunit 4, partial [Bos grunniens
mutus]
Length = 501
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 53 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 258
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 380 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 410
>gi|291411966|ref|XP_002722254.1| PREDICTED: dyskerin [Oryctolagus cuniculus]
Length = 512
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP ++TP S+ E
Sbjct: 385 KASQKRLMIKQGLLDKHGKPTDSTPPSWKQE 415
>gi|410898744|ref|XP_003962857.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Takifugu
rubripes]
Length = 497
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 52 NFDKLNVRTAHYTPLPNGSNPLKRNIHDYVRSGFINLDKPANPSSHEVVAWIRRILRVEK 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQSAGKEY+ I +LH+A+E+ ++ M+
Sbjct: 112 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVGIVRLHNAIESEHTLARALEMLT 171
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 172 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRFGIFWVSCEAGTYIR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 222 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNMVTM 257
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPN +TP+ +
Sbjct: 379 KASQKKMMIQKGLLDKHGKPNSSTPSDW 406
>gi|345328464|ref|XP_001514686.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4
[Ornithorhynchus anatinus]
Length = 598
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I EY+R G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 139 NFDKLNVRTTHYTPLPSGSNPLKREIAEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEK 198
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 199 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGEIQLSRALETLT 258
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 259 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 308
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 309 TLCVHLGLLLGVGGQMQELRRVRSGVMGEKDHMVTM 344
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK+MIKQGLLDKHGKPNE+TP ++
Sbjct: 466 KASQKKLMIKQGLLDKHGKPNESTPTTW 493
>gi|254569894|ref|XP_002492057.1| Pseudouridine synthase catalytic subunit of box H/ACA small
nucleolar ribonucleoprotein particles [Komagataella
pastoris GS115]
gi|238031854|emb|CAY69777.1| Pseudouridine synthase catalytic subunit of box H/ACA small
nucleolar ribonucleoprotein particles [Komagataella
pastoris GS115]
gi|328351452|emb|CCA37851.1| H/ACA ribonucleoprotein complex subunit 4 [Komagataella pastoris
CBS 7435]
Length = 482
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 28 NYDKLLVRSGHYTPIPHGCSPLKRDLKDYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCIDRATRLVKSQQ AGKEY+ + +LH A+EN + K +
Sbjct: 88 TGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKEYVCVVRLHDALENEKELGKSLENLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTIY-DSKLLEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 198 TLCVHLGMMLGVGGHMQELRRVRSGALSENDNLVTL 233
>gi|224139760|ref|XP_002323264.1| predicted protein [Populus trichocarpa]
gi|222867894|gb|EEF05025.1| predicted protein [Populus trichocarpa]
Length = 482
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 154/230 (66%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 45 NYDRLNVRTGHYTPLPCGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ I +LH + +V K ++ +
Sbjct: 105 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHDKIADVTKVARALETLT 164
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 165 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDADKHLVVFWISCEAGTYVR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI E+D +VT M + + + WV
Sbjct: 215 TMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT-----MHDVMDAQWV 259
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
KAS KK +I +G LDKHGKPN+NTP + L
Sbjct: 372 KASIKKKLISEGKLDKHGKPNDNTPHEWARNL 403
>gi|217916954|gb|ACK44288.2| dyskerin (predicted) [Oryctolagus cuniculus]
Length = 440
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 52 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 112 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 171
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 172 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 222 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 257
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP ++TP S+ E
Sbjct: 379 KASQKRLMIKQGLLDKHGKPTDSTPPSWKQE 409
>gi|323510129|dbj|BAJ77958.1| cgd3_3850 [Cryptosporidium parvum]
Length = 518
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 154/240 (64%), Gaps = 23/240 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ KLNVRT HYTPLP+G SPL R + +Y+ G +NLDKP+NPSSHEVVAWIK+ILRCEK
Sbjct: 39 NYSKLNVRTGHYTPLPYGNSPLNRNLADYLSYGIINLDKPANPSSHEVVAWIKKILRCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VC++RATRLVKSQQSAGKEY+ I + HS+V + S+ +
Sbjct: 99 TGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCIVRFHSSVGGKSAVSRCLETLT 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D + + W KC+AGTY+R
Sbjct: 159 GALFQR---------PPVISAVKRQLRVRSIY-DSKLLDYDEKRNLAVFWAKCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIVS 227
T CVHMGL+LGVGA M ELRR RSG SE D +VT +R E I+S
Sbjct: 209 TMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNYRDESYLRRIIS 268
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLS 165
+AS+KK +I G LDKHGKPNE TP S+L P + N D+T S
Sbjct: 366 RASEKKKLILGGKLDKHGKPNEQTPESWLKYEGYIPKLTGDHDDQNDEGKDITGS 420
>gi|66359506|ref|XP_626931.1| Cbf5p; centromere-binding factor 5 like PUA domain containing
protein with a type I pseudouridine synthase domain
[Cryptosporidium parvum Iowa II]
gi|46228344|gb|EAK89243.1| Cbf5p; centromere-binding factor 5 like PUA domain containing
protein with a type I pseudouridine synthase domain
[Cryptosporidium parvum Iowa II]
Length = 520
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 154/240 (64%), Gaps = 23/240 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ KLNVRT HYTPLP+G SPL R + +Y+ G +NLDKP+NPSSHEVVAWIK+ILRCEK
Sbjct: 41 NYSKLNVRTGHYTPLPYGNSPLNRNLADYLSYGIINLDKPANPSSHEVVAWIKKILRCEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VC++RATRLVKSQQSAGKEY+ I + HS+V + S+ +
Sbjct: 101 TGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCIVRFHSSVGGKSAVSRCLETLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D + + W KC+AGTY+R
Sbjct: 161 GALFQR---------PPVISAVKRQLRVRSIY-DSKLLDYDEKRNLAVFWAKCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIVS 227
T CVHMGL+LGVGA M ELRR RSG SE D +VT +R E I+S
Sbjct: 211 TMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNYRDESYLRRIIS 270
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLS 165
+AS+KK +I G LDKHGKPNE TP S+L P + N D+T S
Sbjct: 368 RASEKKKLILGGKLDKHGKPNEQTPESWLKYEGYIPKLTGDHDDQNDEGKDITGS 422
>gi|353242876|emb|CCA74481.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Piriformospora indica DSM 11827]
Length = 532
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 153/228 (67%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G SPL+R IQ Y+R+G +NLDKPSNPSSHEVVAW++RIL+ K
Sbjct: 40 NYDKLLVRTSHFTPIPVGCSPLRRDIQSYVRSGVINLDKPSNPSSHEVVAWMRRILKVNK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ + +LHS + + + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCVIRLHSGLSDPTALGRALETLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D G+ W+ C+AGTY+R
Sbjct: 160 GALFQR---------PPLISAVKRQLRVRTIY-SSKLLEYDNDRHLGVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVGA M ELRR RSG SE D +VT +++FEH
Sbjct: 210 TLCVHLGLLLGVGAHMQELRRVRSGALSENDDIVTMHDVLDAQYLFEH 257
>gi|344306159|ref|XP_003421756.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Loxodonta africana]
Length = 604
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 151 NFDKLNVRTTHYTPLPSGSNPLKREIADYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 210
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH A+E + S+ +
Sbjct: 211 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHDAIEGGTQLSRALETLT 270
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 271 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 320
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 321 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 356
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K+MMIKQGLLDKHGKP ++TPA+++ +
Sbjct: 478 KASQKRMMIKQGLLDKHGKPTDSTPAAWVQQ 508
>gi|67595141|ref|XP_665978.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656867|gb|EAL35749.1| hypothetical protein Chro.30435 [Cryptosporidium hominis]
Length = 518
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 154/240 (64%), Gaps = 23/240 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ KLNVRT HYTPLP+G SPL R + +Y+ G +NLDKP+NPSSHEVVAWIK+ILRCEK
Sbjct: 39 NYSKLNVRTGHYTPLPYGNSPLNRNLTDYLSYGIINLDKPANPSSHEVVAWIKKILRCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VC++RATRLVKSQQSAGKEY+ I + HS+V + S+ +
Sbjct: 99 TGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCIVRFHSSVGGKSAVSRCLETLT 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D + + W KC+AGTY+R
Sbjct: 159 GALFQR---------PPVISAVKRQLRVRSIY-DSKLLDYDEKRNLAVFWAKCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIVS 227
T CVHMGL+LGVGA M ELRR RSG SE D +VT +R E I+S
Sbjct: 209 TMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNYRDESYLRRIIS 268
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK +I G LDKHGKPNE TP S+L
Sbjct: 366 RASEKKKLILGGKLDKHGKPNEQTPESWL 394
>gi|91064867|ref|NP_001025478.1| H/ACA ribonucleoprotein complex subunit 4 [Mus musculus]
gi|341940643|sp|Q9ESX5.4|DKC1_MOUSE RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin; AltName: Full=Nopp140-associated protein
of 57 kDa; AltName: Full=Nucleolar protein NAP57;
AltName: Full=Nucleolar protein family A member 4;
AltName: Full=snoRNP protein DKC1
gi|74201907|dbj|BAE22970.1| unnamed protein product [Mus musculus]
Length = 509
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>gi|444510545|gb|ELV09629.1| H/ACA ribonucleoprotein complex subunit 4, partial [Tupaia
chinensis]
Length = 489
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 24 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 83
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 84 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 143
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 144 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 193
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 194 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 229
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+K++MIKQGLLDKHGKP +NTPA++ E
Sbjct: 351 KASQKRLMIKQGLLDKHGKPTDNTPAAWKQE 381
>gi|74141624|dbj|BAE38575.1| unnamed protein product [Mus musculus]
Length = 509
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>gi|449439649|ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
[Cucumis sativus]
Length = 564
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G PL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR +K
Sbjct: 46 NYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +V+K ++ +
Sbjct: 106 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 166 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDADKHLVVFWISCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E+D +VT
Sbjct: 216 TLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTM 251
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163
+AS KK +I +G LDKHGKPNENTP ++ L P + S +S T
Sbjct: 373 RASMKKKLIGEGKLDKHGKPNENTPQEWMRNL-VLPTGGDVLVASAFVSDSAT 424
>gi|410989737|ref|XP_004001115.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Felis catus]
Length = 645
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 186 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 245
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 246 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 305
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 306 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 355
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 356 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 391
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TP ++ E
Sbjct: 513 KASQKKLMIKQGLLDKHGKPTDSTPVAWTQE 543
>gi|449486954|ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4-like [Cucumis sativus]
Length = 566
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G PL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR +K
Sbjct: 46 NYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +V+K ++ +
Sbjct: 106 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 166 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDADKHLVVFWISCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E+D +VT
Sbjct: 216 TLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTM 251
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163
+AS KK +I +G LDKHGKPNENTP ++ L P + S +S T
Sbjct: 373 RASMKKKLIGEGKLDKHGKPNENTPQEWMRNL-VLPTGGDVLVASAFVSDSAT 424
>gi|354490287|ref|XP_003507290.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Cricetulus
griseus]
gi|344236019|gb|EGV92122.1| H/ACA ribonucleoprotein complex subunit 4 [Cricetulus griseus]
Length = 513
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTP+P G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPIPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP NTP ++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTGNTPPTW 412
>gi|389751571|gb|EIM92644.1| putative rRNA pseudouridine synthase [Stereum hirsutum FP-91666
SS1]
Length = 523
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 149/219 (68%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R + YI++G +NLDKPSNPSSHEVVAW++RILRCEK
Sbjct: 41 NYDKLLVRSSHFTPIPSGNSPLKRDLASYIKSGVINLDKPSNPSSHEVVAWLRRILRCEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LHSA+ N + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHSALPNPTALPRALETLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L+ D + + W+ C+AGT
Sbjct: 161 GALFQR-------------PPLISAVKRQLRIRTIHESKLLEVDEKRNLSVFWVSCEAGT 207
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 208 YIRTLCVHLGLILGVGGHMQELRRVRSGALSENDDMVTM 246
>gi|281347051|gb|EFB22635.1| hypothetical protein PANDA_021575 [Ailuropoda melanoleuca]
Length = 391
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 30 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E ++ S+ +
Sbjct: 90 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGSQLSRALETLT 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 150 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 200 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 235
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA+++ E
Sbjct: 357 KASQKKLMIKQGLLDKHGKPTDSTPATWMQE 387
>gi|170591298|ref|XP_001900407.1| Nucleolar protein K01G5.5 [Brugia malayi]
gi|158592019|gb|EDP30621.1| Nucleolar protein K01G5.5, putative [Brugia malayi]
Length = 452
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 165/228 (72%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVR+NHYTPLP G SPL+R I+ Y+ +G +NLDKP+NPSSHEVVAW+KRILR +K
Sbjct: 46 NFDKLNVRSNHYTPLPEGCSPLKRDIKNYVSSGCINLDKPANPSSHEVVAWVKRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQ AGKEY++IF+LH+ VE S+KK +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKEYVAIFRLHNTVE-----SEKK--VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T ++ LI + + + GI W+KC+AGTYVR
Sbjct: 159 QALEKLTGALFQRPPLISAVKRQL---RIRTIYENKLIEYNSSQNMGIFWVKCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSGI E+D L+T +++++H
Sbjct: 216 TICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYLYDH 263
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
ASKKK MI QGLLDK+GKPNE TPA +
Sbjct: 374 ASKKKAMISQGLLDKYGKPNEKTPAGW 400
>gi|71534070|gb|AAH99966.1| Dkc1 protein [Mus musculus]
Length = 509
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>gi|296422752|ref|XP_002840923.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637149|emb|CAZ85114.1| unnamed protein product [Tuber melanosporum]
Length = 464
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 150/219 (68%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++KL+VRT HYTP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 34 NYEKLHVRTGHYTPIPNGCTPLKRELKSYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH +E A+ ++ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHDKIEGRAQLARALETLT 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L+ D + W+ C+AGT
Sbjct: 154 GALFQR-------------PPLISAVKRQLRIRTVHESKLLEFDNDRHLAVFWVSCEAGT 200
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVGA M ELRR RSG SE D +VT
Sbjct: 201 YIRTLCVHLGLLLGVGAHMQELRRVRSGALSENDNIVTL 239
>gi|351712075|gb|EHB14994.1| H/ACA ribonucleoprotein complex subunit 4 [Heterocephalus glaber]
Length = 708
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R + +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 239 NFDKLNVRTTHYTPLPCGSNPLKRELGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 298
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 299 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 358
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D G+ W+ C+AGTY+R
Sbjct: 359 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPEKRLGVFWVSCEAGTYIR 408
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 409 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 444
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP E+TPA++ E
Sbjct: 566 KASQKKLMIKQGLLDKHGKPTESTPATWKQE 596
>gi|225007597|ref|NP_001028279.2| dyskerin [Danio rerio]
Length = 506
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 160/228 (70%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 53 NFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINLDKPANPSSHEVVAWIKRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQSAGKEY+ I +LH+A+EN + ++ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVGIVRLHNALENEHQLARALECLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT + F+H
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFDH 270
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPN +TP+ +
Sbjct: 380 KASQKKMMIQKGLLDKHGKPNNSTPSDW 407
>gi|224003359|ref|XP_002291351.1| hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana
CCMP1335]
gi|220973127|gb|EED91458.1| hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana
CCMP1335]
Length = 458
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 154/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L++RT+HYTP+P G SPL R ++++I +G +NLDKP+NPSSHEVV+WIKRILR EK
Sbjct: 22 NYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEK 81
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQSAGKEY+ + +LHSA+E+ + + +
Sbjct: 82 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGVVRLHSALEDTKQLHRAVETLT 141
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + GI W+ C+AGTYVR
Sbjct: 142 GALFQR---------PPLISAVKRQLRIRTIY-ESKLIEYDEKRNLGIFWVSCEAGTYVR 191
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL++G G M ELRR RSG+ E D LVT +H+ T
Sbjct: 192 TLCVHLGLLVGTGGHMQELRRVRSGVLDENDNLVTMHDVMDAQHVYDT 239
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN--KKPTYMKSN 156
A +KK +IK+G LDKHGKPNE TP +L ++ K PT +N
Sbjct: 350 AQRKKGLIKEGKLDKHGKPNEKTPKDFLEGYKSVEGAAKAPTLGGAN 396
>gi|72679805|gb|AAI00011.1| Dyskeratosis congenita 1, dyskerin [Danio rerio]
Length = 507
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 160/228 (70%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 53 NFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINLDKPANPSSHEVVAWIKRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQSAGKEY+ I +LH+A+EN + ++ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVGIVRLHNALENEHQLARALECLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT + F+H
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFDH 270
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPN +TP+ +
Sbjct: 380 KASQKKMMIQKGLLDKHGKPNNSTPSDW 407
>gi|148697287|gb|EDL29234.1| mCG7986 [Mus musculus]
Length = 358
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
>gi|19173790|ref|NP_596910.1| H/ACA ribonucleoprotein complex subunit 4 [Rattus norvegicus]
gi|2851506|sp|P40615.4|DKC1_RAT RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin; AltName: Full=Nopp140-associated protein
of 57 kDa; AltName: Full=Nucleolar protein NAP57;
AltName: Full=Nucleolar protein family A member 4;
AltName: Full=snoRNP protein DKC1
gi|2739325|emb|CAA84402.1| NAP57 [Rattus norvegicus]
gi|71680944|gb|AAH99832.1| Dyskeratosis congenita 1, dyskerin [Rattus norvegicus]
Length = 509
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 160/228 (70%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRT HYTP+P G +PL+R I EY+R G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E A+ S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S ++ D G+ W+ C+AGTY+R
Sbjct: 179 GALFQR---------PPLIAAVKRQLRVRTIY-ESRVVEYDPERRLGVFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E D +VT +++++H
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDH 276
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK +IKQGLLDKHG+P + TPAS+
Sbjct: 386 KASQKKQLIKQGLLDKHGRPTDGTPASW 413
>gi|1093316|prf||2103261A nuclear protein NAP57
Length = 466
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 160/228 (70%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRT HYTP+P G +PL+R I EY+R G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E A+ S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S ++ D G+ W+ C+AGTY+R
Sbjct: 179 GALFQR---------PPLIAAVKRQLRVRTIY-ESRVVEYDPERRLGVFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E D +VT +++++H
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDH 276
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK +IKQGLLDKHG+P + TPAS+
Sbjct: 386 KASQKKQLIKQGLLDKHGRPTDGTPASW 413
>gi|402593687|gb|EJW87614.1| dyskeratosis congenita 1 [Wuchereria bancrofti]
Length = 453
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/228 (56%), Positives = 165/228 (72%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVR+NHYTPLP G SPL+R I+ Y+ +G +NLDKP+NPSSHEVVAW+KRILR +K
Sbjct: 46 NFDKLNVRSNHYTPLPEGCSPLKRDIKNYVSSGCINLDKPANPSSHEVVAWVKRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQ AGKEY++IF+LH+ VE S+KK ++
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKEYVAIFRLHNTVE-----SEKK--VR 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T ++ LI + + + GI W+KC+AGTYVR
Sbjct: 159 QALEKLTGALFQRPPLISAVKRQL---RIRTIYENKLIEYNSSQNMGIFWVKCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSGI E+D L+T +++++H
Sbjct: 216 TICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYLYDH 263
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
ASKKK MI QGLLDK+GKPNE TPA +
Sbjct: 374 ASKKKAMISQGLLDKYGKPNEKTPAGW 400
>gi|156839487|ref|XP_001643434.1| hypothetical protein Kpol_487p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114044|gb|EDO15576.1| hypothetical protein Kpol_487p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 470
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T SNLI D + G+ W C+AGTY+R
Sbjct: 140 RSLENLTGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALGENDNMVTL 232
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
A KKK M G LDK+G+ NENTP+ + E N +PT
Sbjct: 355 AQKKKQMKADGKLDKYGRVNENTPSEWKKEYVPLDNAEPT 394
>gi|422294938|gb|EKU22238.1| H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana
CCMP526]
Length = 498
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L+VRT YTP+P G SPL+R ++EY+R G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 49 NYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQ AGKEY+ + +LH A+E +K + +
Sbjct: 109 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLT 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D G+ W+ C+AGTY+R
Sbjct: 169 GALFQR---------PPLIAAVKRQLRIRTIY-ESKLLEYDEKRHLGVFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++G G M ELRR RSG+ +E D L+T
Sbjct: 219 TLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTM 254
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEA 144
A+KKK ++K+G LDKHG+PN TP YL E
Sbjct: 377 ATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEG 409
>gi|417402069|gb|JAA47893.1| Putative pseudouridine synthase [Desmodus rotundus]
Length = 509
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNIRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A++ A+ ++ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIQGGAQLARALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y ++ +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ENKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDK+GKP ++TP ++ E
Sbjct: 385 KASQKKLMIKQGLLDKYGKPTDSTPTTWAQE 415
>gi|449267888|gb|EMC78779.1| H/ACA ribonucleoprotein complex subunit 4, partial [Columba livia]
Length = 464
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 1 NFDKLNVMTAHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 60
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 61 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 120
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 121 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 170
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI E+D +VT
Sbjct: 171 TLCVHLGLLLGVGGQMQELRRVRSGILGEKDNMVTM 206
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPNE TP S+
Sbjct: 332 KASQKKMMIQKGLLDKHGKPNEKTPDSW 359
>gi|313239219|emb|CBY14174.1| unnamed protein product [Oikopleura dioica]
Length = 503
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 152/227 (66%), Gaps = 10/227 (4%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
+DKLNVRTNH+TP P G SPL+R I++Y+ G +N+DKPSNPSSHEVVAWIKRIL+ EKT
Sbjct: 36 WDKLNVRTNHFTPYPQGCSPLKRDIKDYVETGVLNVDKPSNPSSHEVVAWIKRILKVEKT 95
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDPK +GCLIVC+ RATRLVKSQQSAGKEYI IFKLH +++ K K +
Sbjct: 96 GHSGTLDPKVTGCLIVCVGRATRLVKSQQSAGKEYICIFKLHEDIQDEKKIYKAIETLTG 155
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
+ + ++ ++ + Y +SNL+ D G+ W+ C+AGTY+RT
Sbjct: 156 AMFQR---------PPLISAVKRQLRIRTIY-ESNLLEYDAEKRLGVFWVSCEAGTYIRT 205
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
CVH+GL+LG G QM ELRR RSGI +E + T +H+ T
Sbjct: 206 MCVHLGLILGCGGQMQELRRCRSGIMNENELGCTMHDILDAQHVYET 252
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK MIK G+LD++GKPNE TP SY+
Sbjct: 362 KASLKKAMIKAGMLDEYGKPNEKTPDSYV 390
>gi|390480418|ref|XP_002763476.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Callithrix
jacchus]
Length = 506
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 376 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 406
>gi|417411242|gb|JAA52066.1| Putative pseudouridine synthase, partial [Desmodus rotundus]
Length = 503
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 57 NFDKLNIRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A++ A+ ++ +
Sbjct: 117 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIQGGAQLARALETLT 176
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y ++ +I D GI W+ C+AGTY+R
Sbjct: 177 GALFQR---------PPLIAAVKRQLRVRTIY-ENKMIEYDPERRLGIFWVSCEAGTYIR 226
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 227 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 262
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDK+GKP ++TP ++ E
Sbjct: 384 KASQKKLMIKQGLLDKYGKPTDSTPTTWAQE 414
>gi|327277364|ref|XP_003223435.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Anolis
carolinensis]
Length = 579
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I EYI+ G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 120 NFDKLNVRTAHYTPLPSGCNPLKREITEYIKTGFINLDKPSNPSSHEVVAWIRRILRVEK 179
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ + S+ +
Sbjct: 180 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESETQLSRAIETLT 239
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 240 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 289
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ E+D +VT
Sbjct: 290 TLCVHLGLLLGVGGQMQELRRVRSGVMGEKDHMVTM 325
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMIK+GLLD HGKPN NTP S+ E
Sbjct: 447 KASQKKMMIKEGLLDAHGKPNSNTPQSWKKE 477
>gi|5542014|emb|CAB51168.1| dyskerin [Homo sapiens]
Length = 524
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|312082773|ref|XP_003143583.1| nucleolar protein [Loa loa]
gi|307761254|gb|EFO20488.1| nucleolar protein [Loa loa]
Length = 453
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/228 (56%), Positives = 164/228 (71%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+NVR+NHYTPLP G SPL+R I+ Y+ +G +NLDKP+NPSSHEVVAWIKRILR +K
Sbjct: 46 NFDKMNVRSNHYTPLPEGCSPLKRDIKNYVSSGCINLDKPANPSSHEVVAWIKRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRL KSQQ AGKEY++IF+LH+ VE S+KK ++
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKEYVAIFRLHNTVE-----SEKK--VR 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T ++ LI + + GI W+KC+AGTYVR
Sbjct: 159 QALEKLTGALFQRPPLISAVKRQL---RIRTIYENRLIEYNSNQNMGIFWVKCEAGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSGI E+D L+T +++++H
Sbjct: 216 TICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYLYDH 263
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
ASKKK MI QGLLDK+GKPNE TPA +
Sbjct: 374 ASKKKAMINQGLLDKYGKPNEKTPAGW 400
>gi|4503337|ref|NP_001354.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Homo sapiens]
gi|426398017|ref|XP_004065199.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Gorilla
gorilla gorilla]
gi|3913488|sp|O60832.3|DKC1_HUMAN RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=CBF5 homolog; AltName: Full=Dyskerin; AltName:
Full=Nopp140-associated protein of 57 kDa; AltName:
Full=Nucleolar protein NAP57; AltName: Full=Nucleolar
protein family A member 4; AltName: Full=snoRNP protein
DKC1
gi|3135028|emb|CAA11970.1| dyskerin [Homo sapiens]
gi|3873221|gb|AAD11815.1| dyskerin [Homo sapiens]
gi|4416165|gb|AAD20232.1| dyskerin [Homo sapiens]
gi|14603090|gb|AAH10015.1| Dyskeratosis congenita 1, dyskerin [Homo sapiens]
gi|117644412|emb|CAL37701.1| hypothetical protein [synthetic construct]
gi|117646788|emb|CAL37509.1| hypothetical protein [synthetic construct]
gi|119593068|gb|EAW72662.1| dyskeratosis congenita 1, dyskerin, isoform CRA_b [Homo sapiens]
gi|306921545|dbj|BAJ17852.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
gi|410221700|gb|JAA08069.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410256254|gb|JAA16094.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410308136|gb|JAA32668.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410330037|gb|JAA33965.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
Length = 514
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|215599015|ref|NP_001135935.1| H/ACA ribonucleoprotein complex subunit 4 isoform 2 [Homo sapiens]
Length = 509
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK+MIKQGLLDKHGKP ++TPA++
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATW 412
>gi|431897753|gb|ELK06652.1| H/ACA ribonucleoprotein complex subunit 4 [Pteropus alecto]
Length = 593
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 151 NFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 210
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + + +
Sbjct: 211 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLFRALETLT 270
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 271 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 320
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 321 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 356
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGK ++TP ++ E
Sbjct: 478 KASQKKLMIKQGLLDKHGKRTDSTPVTWTQE 508
>gi|14602859|gb|AAH09928.1| Dyskeratosis congenita 1, dyskerin [Homo sapiens]
gi|123984635|gb|ABM83663.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
gi|123998617|gb|ABM86910.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
Length = 514
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|397477294|ref|XP_003810008.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Pan paniscus]
Length = 514
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|332260599|ref|XP_003279372.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nomascus
leucogenys]
Length = 514
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|219120454|ref|XP_002180965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407681|gb|EEC47617.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 484
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 155/228 (67%), Gaps = 9/228 (3%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ +L+VRT HYTPLP G SPL RT++++++ G +NLDKP+NPSSHEVV+WIKRILR EK
Sbjct: 48 NYHELHVRTAHYTPLPTGSSPLARTLEQHLQYGVINLDKPANPSSHEVVSWIKRILRVEK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQSAGKEYI + +LH+A+++ + ++
Sbjct: 108 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYIGVVRLHAALDDPKQLTRAIETTL 167
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T S L+ D + G+ W+KC+AGTY+R
Sbjct: 168 TGALFQ--RPPLISAVKRQLRIR-------TIYDSKLLEFDGERNLGVFWVKCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH GL++G G M ELRR +SG+ EED LVT +H+ T
Sbjct: 219 TLCVHAGLLVGTGGHMQELRRVKSGVLGEEDNLVTLHDVMDAQHVYDT 266
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSN 156
A +KK MIK+G LDKHGKPNE TP+++L + KP + N
Sbjct: 377 AQRKKSMIKEGKLDKHGKPNEKTPSNFLDSYKDYSKSKPPVLDGN 421
>gi|281183100|ref|NP_001162280.1| H/ACA ribonucleoprotein complex subunit 4 [Papio anubis]
gi|386781757|ref|NP_001247923.1| H/ACA ribonucleoprotein complex subunit 4 [Macaca mulatta]
gi|160213472|gb|ABX11000.1| dyskeratosis congenita 1, dyskerin (predicted) [Papio anubis]
gi|380810210|gb|AFE76980.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
gi|383416265|gb|AFH31346.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
gi|384945618|gb|AFI36414.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
Length = 514
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDK+GKP E+TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKYGKPTESTPATWKQE 415
>gi|2737894|gb|AAB94299.1| Cbf5p homolog [Homo sapiens]
Length = 514
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|170649648|gb|ACB21235.1| dyskeratosis congenita 1, dyskerin (predicted) [Callicebus moloch]
Length = 515
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|403306934|ref|XP_003943972.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Saimiri
boliviensis boliviensis]
Length = 515
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|167045833|gb|ABZ10501.1| dyskeratosis congenita 1, dyskerin (predicted) [Callithrix jacchus]
Length = 515
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|71895397|ref|NP_001026286.1| H/ACA ribonucleoprotein complex subunit 4 [Gallus gallus]
gi|67460227|sp|Q5ZJH9.1|DKC1_CHICK RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin
gi|53133570|emb|CAG32114.1| hypothetical protein RCJMB04_17p9 [Gallus gallus]
Length = 516
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 56 NFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 116 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 175
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 176 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 226 TLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTM 261
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE TP S+ E
Sbjct: 383 KASQKKMMIQKGLLDKHGKPNECTPDSWKKE 413
>gi|395754664|ref|XP_002832372.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Pongo abelii]
Length = 520
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 64 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 123
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 124 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 183
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 184 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 233
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 234 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 269
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 391 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 421
>gi|326918816|ref|XP_003205682.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Meleagris gallopavo]
Length = 489
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 29 NFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 149 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPEKRLGIFWVSCEAGTYIR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 199 TLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTM 234
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE TP S+ E
Sbjct: 356 KASQKKMMIQKGLLDKHGKPNECTPDSWKKE 386
>gi|322796794|gb|EFZ19221.1| hypothetical protein SINV_10049 [Solenopsis invicta]
Length = 497
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDK+ RT H+TPL G +PL R+I EYI++G +NLDKP NPSSHEVVAWIK+IL+ EK
Sbjct: 43 NFDKMLTRTKHFTPLTSGSTPLNRSISEYIKSGCINLDKPCNPSSHEVVAWIKKILKVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCID+ATRL KSQQSAGKEYI++FKLHSA E++ K ++ ++
Sbjct: 103 TGHSGTLDPKVSGCLIVCIDKATRLAKSQQSAGKEYIAVFKLHSAPESIQKVNQALERLR 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S D + G+ + C+AG+Y+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRVRTVY-DSWFHDYDQERNMGVFRVSCEAGSYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL LG G M ELRR+RSG+QSE DG+VT
Sbjct: 213 TMCVHLGLFLGTGCHMQELRRSRSGVQSENDGMVTM 248
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 25/29 (86%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS+KK MI +G LDKHGKPNENTPA +L
Sbjct: 370 KASQKKRMIIEGSLDKHGKPNENTPAEWL 398
>gi|45184817|ref|NP_982535.1| AAL007Cp [Ashbya gossypii ATCC 10895]
gi|44980426|gb|AAS50359.1| AAL007Cp [Ashbya gossypii ATCC 10895]
gi|374105734|gb|AEY94645.1| FAAL007Cp [Ashbya gossypii FDAG1]
Length = 485
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 147/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 27 NYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ ++ +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRELENLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D + G+ W C+AGTY+R
Sbjct: 147 GALFQR---------PPLISAVKRQLRVRTIY-DSKLIEFDNKRNLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALDENDNMVTL 232
>gi|355757840|gb|EHH61365.1| hypothetical protein EGM_19364, partial [Macaca fascicularis]
Length = 503
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 53 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 113 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 258
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDK+GKP E+TPA++ E
Sbjct: 380 KASQKKLMIKQGLLDKYGKPTESTPATWKQE 410
>gi|356525850|ref|XP_003531534.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
max]
Length = 555
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 158/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+++LNVRT HYTP+P G SPL+R + EY++ G +NLDKP+NPSSHEVVAWIKR+LR EK
Sbjct: 22 NYERLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEK 81
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ I +LHSAV +++K S+ +
Sbjct: 82 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDISKVSRALETLT 141
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 142 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDPDRHLVVFWISCEAGTYVR 191
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG+ M ELRR RSGI E+D +V+ M + + + WV
Sbjct: 192 TMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVS-----MHDVMDAQWV 236
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
+AS KK +I +G LDKHGKPNE TP +L L
Sbjct: 349 RASMKKRLISEGKLDKHGKPNEKTPQEWLRNL 380
>gi|146415190|ref|XP_001483565.1| centromere/microtubule-binding protein CBF5 [Meyerozyma
guilliermondii ATCC 6260]
Length = 501
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 50 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRTEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + +
Sbjct: 110 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDELKDAKDMGRSLENLT 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 170 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG +E D LVT
Sbjct: 220 TLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTL 255
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
A KKK + G LDK+G+ NENTP S+ AE
Sbjct: 378 AQKKKQLKADGKLDKYGRTNENTPESWKAE 407
>gi|209881941|ref|XP_002142408.1| H/ACA ribonucleoprotein complex subunit 4 [Cryptosporidium muris
RN66]
gi|209558014|gb|EEA08059.1| H/ACA ribonucleoprotein complex subunit 4, putative
[Cryptosporidium muris RN66]
Length = 462
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 147/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ LNVRT HYTPLPFG SPL R + +Y+ G +NLDKP+NPSSHEVVAWIK+ILRCEK
Sbjct: 39 NYSNLNVRTGHYTPLPFGSSPLNRNLSDYLSYGVINLDKPANPSSHEVVAWIKKILRCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VC++RATRLVKSQQSAGKEY+ I + H+ K +
Sbjct: 99 TGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCIARFHA-------KPVSKFAVA 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P +A ++ + Y ++ L+ D + + W KC+AGTY+R
Sbjct: 152 RSLETLTGALFQRPPV--IAAVKRQLRVRSIY-ETKLLDYDEKRNLAVFWAKCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LGVGA M ELRR RSG SE D +VT
Sbjct: 209 TMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTM 244
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK +I G LDK+GKPNE TP S+L
Sbjct: 366 RASEKKKLILGGKLDKYGKPNEQTPKSWL 394
>gi|344305042|gb|EGW35274.1| nucleolar pseudouridine synthase and putative microtubule binding
protein [Spathaspora passalidarum NRRL Y-27907]
Length = 465
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 27 NYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRAEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +EN + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDELENAKE-------LG 139
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L + G + P + + + T S LI D G+ W C+AGTY+R
Sbjct: 140 QTLENLTGALFQRPPLISAVKRQL---RVRTIYDSKLIEFDNKRGLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSEADEMVTL 232
>gi|190347847|gb|EDK40196.2| centromere/microtubule-binding protein CBF5 [Meyerozyma
guilliermondii ATCC 6260]
Length = 501
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 50 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRTEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + +
Sbjct: 110 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDELKDAKDMGRSLENLT 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 170 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG +E D LVT
Sbjct: 220 TLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTL 255
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
A KKK + G LDK+G+ NENTP S+ AE
Sbjct: 378 AQKKKQLKADGKLDKYGRTNENTPESWKAE 407
>gi|126274082|ref|XP_001387815.1| nucleolar pseuduridine synthase and putative microtubule binding
protein [Scheffersomyces stipitis CBS 6054]
gi|126213685|gb|EAZ63792.1| nucleolar pseuduridine synthase and putative microtubule binding
protein [Scheffersomyces stipitis CBS 6054]
Length = 475
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 144/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R I+ YI +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 27 NFDKLLVRSGHYTPIPSGSSPLKRDIKSYISSGVINLDKPSNPSSHEVVAWIKRILRSEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHEELKDAKDLGRSLENLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 147 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D LVT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALGENDNLVTL 232
>gi|402074182|gb|EJT69711.1| centromere/microtubule-binding protein cbf5 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 477
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 146/229 (63%), Gaps = 35/229 (15%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL+VRT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 35 NYDKLHVRTGHFTPIPSGSTPLRRDIKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ + ++H V
Sbjct: 95 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCVIRMHDKVPG------------ 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
G+P A L L A ++P T +S LI D G
Sbjct: 143 -------GQPEF---ARALEHLTGALFQRPPLISAVKRQLRIRTVHESKLIEFDNDRHLG 192
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+ C+AGTY+RT CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 193 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 241
>gi|348669879|gb|EGZ09701.1| hypothetical protein PHYSODRAFT_258871 [Phytophthora sojae]
Length = 477
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+++LNVRT HYTP+ SPL+R + +Y+R G +NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 46 NYNQLNVRTGHYTPIACSSSPLKRNLNDYVRYGVINLDKPANPSSHEVVAWIRRILRVEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVK+QQ AGKEY+++ +LHSA+E AK ++ +
Sbjct: 106 TGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVAVVRLHSAIEGQAKLARAIETLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D GI + C+AGTY+R
Sbjct: 166 GALFQR---------PPLISAVKRQLRIRTIY-SSKLIEYDEDRHLGIFHVSCEAGTYIR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG M ELRR RSG+ E D +VT
Sbjct: 216 TLCVHLGLVLGVGGHMQELRRVRSGVLGENDSMVTM 251
>gi|429327653|gb|AFZ79413.1| rRNA pseudouridine synthase, putative [Babesia equi]
Length = 417
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G SPL R + YIR G++NLDKP+NPSSHE+VAWIKRILRCEK
Sbjct: 29 NYDKLNVRTGHYTPMPNGSSPLCRDLTNYIRYGFINLDKPANPSSHEIVAWIKRILRCEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VCIDRATRLVKSQQS GKEY+ I K HS E+ +K + +
Sbjct: 89 TGHSGTLDPKVTGVLLVCIDRATRLVKSQQSHGKEYVGIVKFHSTPESRSKVERVLETLT 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 149 GSLFQR---------PPLIAAVKRQLRVRTIY-QSKLLDYDEEQNMATFWVNCEAGTYVR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LG GA M ELRR +SG +E D +VT
Sbjct: 199 TLCVHMGLLLGTGAHMQELRRIKSGNITEYDNMVTM 234
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK + G+LDKHGKPNE+TPAS+L
Sbjct: 356 RASEKKKLQLAGMLDKHGKPNESTPASWL 384
>gi|323434335|gb|ADX66370.1| dyskeratosis congenita 1 isoform 3 [Homo sapiens]
Length = 420
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|260941752|ref|XP_002615042.1| centromere/microtubule binding protein CBF5 [Clavispora lusitaniae
ATCC 42720]
gi|238851465|gb|EEQ40929.1| centromere/microtubule binding protein CBF5 [Clavispora lusitaniae
ATCC 42720]
Length = 475
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 26 NYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH +E+ + + +
Sbjct: 86 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHEELEDAKEMGRALENLT 145
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 146 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D +VT
Sbjct: 196 TLCVHLGMLLGVGGHMQELRRVRSGAMGENDNMVTL 231
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL-EAAPNKKPTYMKSNLISSDVTL 164
A KKK M G LD+ G+ NENTP S+ E + A P +S L++ +V L
Sbjct: 354 AQKKKQMKADGKLDRFGRTNENTPESWKQEYKDHAEEPAPPVPESKLVAPEVML 407
>gi|84994974|ref|XP_952209.1| centromere/microtubule binding protein [Theileria annulata strain
Ankara]
gi|65302370|emb|CAI74477.1| centromere/microtubule binding protein, putative [Theileria
annulata]
Length = 420
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 149/229 (65%), Gaps = 36/229 (15%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G SPL R ++ Y++ GY+NLDKP+NPSSHEVVAWIKRILRCEK
Sbjct: 29 NYDKLNVRTGHYTPMPHGSSPLCRDMKNYMKYGYINLDKPANPSSHEVVAWIKRILRCEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQS GKEY+++ K HS+ E+ AK K
Sbjct: 89 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQSHGKEYVAVVKFHSSPESGAKIEK------ 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
LAEL + ++P T S L+ +
Sbjct: 143 -----------------VLAELTGSLFQRPPLISAVKRQLRVRTIFASKLLDYNEQEDLA 185
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+KC+AGTYVRT C+HMGL+LG GA M ELRR +SG SE D +VT
Sbjct: 186 LFWVKCEAGTYVRTLCIHMGLLLGTGAHMQELRRIKSGNISEYDNMVTM 234
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPAS------YLAELEAAP 146
++++KK +I GLLDK GK NENTP S YL +L P
Sbjct: 356 RSTEKKRLISLGLLDKDGKVNENTPQSWKNNEGYLPKLTGTP 397
>gi|3334140|sp|O43100.1|CBF5_EMENI RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5; AltName: Full=rRNA pseudouridine synthase
gi|2737888|gb|AAB94296.1| nucleolar protein AnCbf5p [Emericella nidulans]
gi|19743614|gb|AAL23694.1| rRNA pseudouridine synthase [Emericella nidulans]
gi|259482934|tpe|CBF77883.1| TPA: Centromere/microtubule-binding protein CBF5
(Centromere-binding factor 5)(Small nucleolar RNP
protein CBF5)(H/ACA snoRNP protein CBF5)(rRNA
pseudouridine synthase)
[Source:UniProtKB/Swiss-Prot;Acc:O43100] [Aspergillus
nidulans FGSC A4]
Length = 481
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 29 NYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 149 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG SE +G+VT
Sbjct: 200 TLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTL 235
>gi|67903728|ref|XP_682120.1| CBF5_EMENI Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Nucleolar protein CBF5)
[Aspergillus nidulans FGSC A4]
gi|40740949|gb|EAA60139.1| CBF5_EMENI Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Nucleolar protein CBF5)
[Aspergillus nidulans FGSC A4]
Length = 490
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 146/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 29 NYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 149 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG SE +G+VT
Sbjct: 200 TLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTL 235
>gi|255728133|ref|XP_002548992.1| centromere/microtubule-binding protein CBF5 [Candida tropicalis
MYA-3404]
gi|240133308|gb|EER32864.1| centromere/microtubule-binding protein CBF5 [Candida tropicalis
MYA-3404]
Length = 480
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 147/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL R I+ YI++G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 28 NYDKLLVRSGHYTPIPAGSAPLNRDIRSYIQSGVINLDKPSNPSSHEVVAWIKRILRVEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH + A K++
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDKL-----ADDKEL--N 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T SNLI D G+ W C+AGTY+R
Sbjct: 141 RALENLTGALFQRPPLISAVKRQL---RVRTVYDSNLIEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGAMSENDNMVTL 233
>gi|355705303|gb|EHH31228.1| hypothetical protein EGK_21116 [Macaca mulatta]
Length = 597
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 141 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 200
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 201 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 260
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 261 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 310
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 311 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 346
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDK+GKP E+TPA++ E
Sbjct: 468 KASQKKLMIKQGLLDKYGKPTESTPATWKQE 498
>gi|390367959|ref|XP_786768.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 253
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 156/216 (72%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT HYTPLP G SPL+R I+EY+ +G++NLDKP+NPSSHEVV+W+K+ILR EK
Sbjct: 47 NYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINLDKPANPSSHEVVSWVKKILRVEK 106
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH A+EN +K +K +
Sbjct: 107 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVCIVRLHDAIENQSKLAKAIETLT 166
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 167 GALFQR---------PPLISAVKRQLRVRTIY-ESKLIEYDPQRHLGIFWVSCEAGTYIR 216
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGIQSE+ + F
Sbjct: 217 TLCVHLGLLLGVGGQMAELRRVRSGIQSEKVSALVF 252
>gi|170084049|ref|XP_001873248.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650800|gb|EDR15040.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 505
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 148/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSSHFTPIPSGCSPLKRDISSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LHS + A + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHSGLSTPAALPRALQTLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L+ D + G+ W+ C+AGT
Sbjct: 161 GALFQR-------------PPLISAVKRQLRIRTIHESKLLEFDEKRNLGVFWVSCEAGT 207
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 208 YIRTLCVHLGLILGVGGHMQELRRVRSGAMSENDDMVTM 246
>gi|401410600|ref|XP_003884748.1| putative centromere/microtubule binding protein [Neospora caninum
Liverpool]
gi|325119166|emb|CBZ54718.1| putative centromere/microtubule binding protein [Neospora caninum
Liverpool]
Length = 503
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL R +Q+YI G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 48 NYDRLNVRTGHYTPLPHGCSPLCRPLQQYINYGAMNLDKPANPSSHEVVAWLKKILRVEK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCI+RATRLVKSQQSAGKEY+ I + H+ E+ AK ++ +
Sbjct: 108 TGHSGTLDPKVTGCLLVCINRATRLVKSQQSAGKEYVCIIRFHAKPESRAKVARALETLT 167
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D + W+KC+AGTY+R
Sbjct: 168 GALFQR---------PPVVAAVKRQLRIRTIY-ESRLLDFDDQRHMAVFWVKCEAGTYIR 217
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLG GA M ELRR RSG E D LVT
Sbjct: 218 TLCVHLGLVLGCGAHMQELRRVRSGNLGENDHLVTM 253
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK MI GLLDK GKPNE TPA++L
Sbjct: 375 RASEKKKMILAGLLDKKGKPNEKTPATWL 403
>gi|74204437|dbj|BAE39967.1| unnamed protein product [Mus musculus]
Length = 509
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLD K +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDHKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>gi|332862028|ref|XP_521345.3| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4 [Pan troglodytes]
Length = 516
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNP SHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPXSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
+AS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 QASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>gi|71030864|ref|XP_765074.1| rRNA pseudouridine synthase [Theileria parva strain Muguga]
gi|68352030|gb|EAN32791.1| rRNA pseudouridine synthase, putative [Theileria parva]
Length = 421
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 149/229 (65%), Gaps = 36/229 (15%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G SPL R ++ Y++ GY+NLDKP+NPSSHEVVAWIKRILRCEK
Sbjct: 29 NYDKLNVRTGHYTPMPHGSSPLCRDMKNYMKYGYINLDKPANPSSHEVVAWIKRILRCEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++R+TRLVKSQQ+ GKEY+++ K HS+ E+ AK K
Sbjct: 89 TGHSGTLDPKVTGVLLVCLNRSTRLVKSQQTHGKEYVAVVKFHSSPESKAKVEK------ 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
LAEL A ++P T S L+ +
Sbjct: 143 -----------------VLAELTGALFQRPPLISAVKRQLRVRTIYASKLLDYNEQEDLA 185
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+KC+AGTYVRT C+HMGL+LG GA M ELRR +SG SE D +VT
Sbjct: 186 LFWVKCEAGTYVRTLCIHMGLLLGTGAHMQELRRIKSGNISEYDNMVTM 234
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPAS------YLAELEAAP 146
++++KK +I GLLDK GK NENTP S YL +L P
Sbjct: 356 RSAEKKRLISLGLLDKDGKVNENTPQSWTNNEGYLPKLTGTP 397
>gi|367024169|ref|XP_003661369.1| hypothetical protein MYCTH_2090056 [Myceliophthora thermophila ATCC
42464]
gi|347008637|gb|AEO56124.1| hypothetical protein MYCTH_2090056 [Myceliophthora thermophila ATCC
42464]
Length = 490
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 148/217 (68%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+ VR+ H+TP+P G SP +R I+ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 41 NYDKMLVRSGHFTPIPNGSSPYKRDIKSYISSGVINLDKPSNPSSHEVVAWLKRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQ AGKEY+ + + H V A K + I
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVCVIRFHDTVPGGEAAFAKALEIL 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 161 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVGA M ELRR RSG+ SE+DG +VT
Sbjct: 212 TLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGTMVTL 248
>gi|403222102|dbj|BAM40234.1| centromere/microtubule binding protein [Theileria orientalis strain
Shintoku]
Length = 427
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G SPL R + Y++ GY+NLDKP+NPSSHE+VAWIKRILRCEK
Sbjct: 29 NYDKLNVRTGHYTPMPHGSSPLCRDLSNYMKYGYINLDKPANPSSHEIVAWIKRILRCEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ+ GKEY+++ K HS E+ AK K +
Sbjct: 89 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQNHGKEYVAVVKFHSPPESKAKVEKVLAELT 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ + + W+KC+AGTYVR
Sbjct: 149 GTLFQR---------PPLIAAVKRQLRVRTIY-ESKLLDYNAEEDLALFWVKCEAGTYVR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LG GA M ELRR +SG SE D +VT
Sbjct: 199 TMCVHMGLLLGTGAHMQELRRVKSGNISEYDNMVTM 234
>gi|50306599|ref|XP_453273.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|3023443|sp|O13473.1|CBF5_KLULA RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5
gi|2258455|gb|AAC64862.1| centromere-binding factor 5 [Kluyveromyces lactis]
gi|49642407|emb|CAH00369.1| KLLA0D04796p [Kluyveromyces lactis]
Length = 474
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 145/210 (69%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + + +GL +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKELGRGLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D + G+ W C+AGTY+RT CVH+
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D LVT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNLVTL 232
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
A KKK M G LDK+G+ NENTP ++ + N +PT
Sbjct: 355 AQKKKQMKADGKLDKYGRANENTPETWKKTYVSLENAEPT 394
>gi|405120206|gb|AFR94977.1| centromere/microtubule binding protein cbf5 [Cryptococcus
neoformans var. grubii H99]
Length = 503
Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R +Q Y+++G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 45 NYDKLLVRSSHFTPIPSGISPLKRDLQTYVKSGVINLDKPSNPSSHEVVAWLKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + + H +++ KA + +
Sbjct: 105 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVVRFHDKLQD-EKALPRALETL 163
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D + G+ W+ C+AGTY+R
Sbjct: 164 TGALFQR--------PPLISAVKRQLRVRTIY-ESKLIEYDNERNLGVFWVSCEAGTYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E D +V+
Sbjct: 215 TLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSM 250
>gi|321257598|ref|XP_003193645.1| centromere/microtubule binding protein cbf5 [Cryptococcus gattii
WM276]
gi|317460115|gb|ADV21858.1| Centromere/microtubule binding protein cbf5, putative [Cryptococcus
gattii WM276]
Length = 503
Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R +Q Y+++G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 45 NYDKLLVRSSHFTPIPTGISPLKRDLQTYVKSGVINLDKPSNPSSHEVVAWLKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + + H +++ KA + +
Sbjct: 105 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVVRFHDKLKD-EKALARALETL 163
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D + G+ W+ C+AGTY+R
Sbjct: 164 TGALFQR--------PPLISAVKRQLRVRTIY-ESKLIEYDNERNLGVFWVSCEAGTYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E D +V+
Sbjct: 215 TLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSM 250
>gi|50426879|ref|XP_462038.1| DEHA2G11748p [Debaryomyces hansenii CBS767]
gi|49657708|emb|CAG90524.1| DEHA2G11748p [Debaryomyces hansenii CBS767]
Length = 472
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 27 NYDKLLVRSGHYTPIPSGCSPLKRDLKSYISSGIINLDKPSNPSSHEVVAWIKRILRSEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + + +
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDELKDAKEMGRSLENLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 147 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 197 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTL 232
>gi|367037043|ref|XP_003648902.1| hypothetical protein THITE_2106879 [Thielavia terrestris NRRL 8126]
gi|346996163|gb|AEO62566.1| hypothetical protein THITE_2106879 [Thielavia terrestris NRRL 8126]
Length = 487
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 149/217 (68%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+ VR+ H+TP+P G SP +R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 35 NYDKMLVRSGHFTPIPNGSSPYKRDLKSYISSGVINLDKPSNPSSHEVVAWLKRILRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQSAGKEY+++ + H V A K +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVAVIRFHDTVPGGEPAFAKALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 155 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVGA M ELRR RSG+ SE+DG +VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGSMVTL 242
>gi|384246457|gb|EIE19947.1| putative rRNA pseudouridine synthase [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 154/230 (66%), Gaps = 14/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G +PL+R +++++R G +NLDKPSNPSSHEVVAWI+RILR K
Sbjct: 31 NYDKLNVRTGHYTPIPAGHTPLRRPLEDHVRYGVINLDKPSNPSSHEVVAWIRRILRVNK 90
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC++RATRLVKSQQ AGKEY+ I +LHS V A A + +
Sbjct: 91 TGHSGTLDPKVTGSLIVCVERATRLVKSQQGAGKEYVCIARLHSKVPGGAAAVSRALTSL 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+G L + +P + + T S ++ D + W+ C+AGTYVR
Sbjct: 151 RGALFQ--RPPLISAVKRQLRVR-------TIFDSKMLEFDEDRQLVVFWISCEAGTYVR 201
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVGA M ELRR RSGI E+D LVT M + + + WV
Sbjct: 202 TMCVHLGLMLGVGAHMQELRRVRSGIVGEKDNLVT-----MHDILDAQWV 246
>gi|58266086|ref|XP_570199.1| centromere/microtubule binding protein cbf5 [Cryptococcus
neoformans var. neoformans JEC21]
gi|134110942|ref|XP_775935.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258601|gb|EAL21288.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226432|gb|AAW42892.1| centromere/microtubule binding protein cbf5, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 503
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 152/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R +Q Y+++G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 45 NYDKLLVRSSHFTPIPSGISPLKRDLQTYVKSGVINLDKPSNPSSHEVVAWLKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + + H +++ KA + +
Sbjct: 105 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVVRFHDKLQD-EKALPRALETL 163
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D + G+ W+ C+AGTY+R
Sbjct: 164 TGALFQR--------PPLISAVKRQLRVRTIY-ESKLIEYDNERNLGVFWVSCEAGTYIR 214
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E D +V+
Sbjct: 215 TLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSM 250
>gi|70998678|ref|XP_754061.1| pseudouridylate synthase family protein [Aspergillus fumigatus
Af293]
gi|3334142|sp|O43102.1|CBF5_ASPFU RecName: Full=Centromere/microtubule-binding protein cbf5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein cbf5; AltName: Full=Small nucleolar RNP
protein cbf5
gi|2737892|gb|AAB94298.1| nucleolar protein AfCbf5p [Aspergillus fumigatus]
gi|66851697|gb|EAL92023.1| pseudouridylate synthase family protein [Aspergillus fumigatus
Af293]
gi|159126206|gb|EDP51322.1| pseudouridylate synthase family protein [Aspergillus fumigatus
A1163]
Length = 487
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +GLVT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTL 240
>gi|336374989|gb|EGO03325.1| hypothetical protein SERLA73DRAFT_83244 [Serpula lacrymans var.
lacrymans S7.3]
Length = 526
Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++DKL VR++H+TP+P G SPL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 HYDKLLVRSSHFTPIPSGSSPLKRDITSYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LHS + + + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHSGLPDPTALPRALQTLS 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + G+ W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEKRNLGVFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 213 TLCVHLGLILGVGGHMQELRRVRSGAMSENDDIVTM 248
>gi|119498611|ref|XP_001266063.1| centromere/microtubule binding protein cbf5 [Neosartorya fischeri
NRRL 181]
gi|119414227|gb|EAW24166.1| centromere/microtubule binding protein cbf5 [Neosartorya fischeri
NRRL 181]
Length = 487
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +GLVT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTL 240
>gi|301113300|ref|XP_002998420.1| H/ACA ribonucleoprotein complex subunit 4 [Phytophthora infestans
T30-4]
gi|262111721|gb|EEY69773.1| H/ACA ribonucleoprotein complex subunit 4 [Phytophthora infestans
T30-4]
Length = 480
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ +LNVRT HYTP+ SPL+R + +Y+R G +NLDKP+NPSSHEVVAWI+RILR +K
Sbjct: 46 NYHQLNVRTGHYTPIACSSSPLKRNLHDYVRYGVINLDKPANPSSHEVVAWIRRILRVDK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVK+QQ AGKEY+++ +LHSA+E+ K ++ +
Sbjct: 106 TGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVAVVRLHSAIESQVKLARAIETLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P + L + T +S LI D GI + C+AGTY+R
Sbjct: 166 GALFQR--PPLISAVKRQL--------RIRTIYESKLIEYDEDRHLGIFHVSCEAGTYIR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG M ELRR RSG+ E D +VT
Sbjct: 216 TLCVHLGLVLGVGGHMQELRRVRSGVMGENDAMVTM 251
>gi|169844228|ref|XP_001828835.1| centromere/microtubule binding protein cbf5 [Coprinopsis cinerea
okayama7#130]
gi|116509947|gb|EAU92842.1| centromere/microtubule binding protein cbf5 [Coprinopsis cinerea
okayama7#130]
Length = 522
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSAHFTPIPSGCSPLKRDITSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+ + N A + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHAGLPNPAALPRALQTLS 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D + + W+ C+AGTY+R
Sbjct: 161 GALFQR---------PPLISAVKRQLRIRTIY-DSKLIEFDDKRNLAVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 211 TLCVHLGLILGVGGHMQELRRVRSGAMSENDDMVTM 246
>gi|392573646|gb|EIW66785.1| hypothetical protein TREMEDRAFT_40777, partial [Tremella
mesenterica DSM 1558]
Length = 500
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL +R++H+TP+P G SPL+R +Q YI++G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 50 NYDKLLIRSSHFTPIPTGVSPLKRDLQTYIKSGVMNLDKPSNPSSHEVVAWLKRILRVEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + + H + + KA + +
Sbjct: 110 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVVRFHDTLTD-PKALPRALETL 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D + + W+ C+AGTY+R
Sbjct: 169 TGALFQR--------PPLISAVKRQLRVRTIY-ESKLIEHDAERNLAVFWVSCEAGTYIR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSGI E D +VT
Sbjct: 220 TLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVTM 255
>gi|385304244|gb|EIF48269.1| centromere microtubule-binding protein cbf5 [Dekkera bruxellensis
AWRI1499]
Length = 489
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 151/221 (68%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VR +HYTP+P G SPL R I++Y+ +G +NLDKPSNPSSHEVVAWIKRILR +K
Sbjct: 27 NYDQLLVRCSHYTPIPAGSSPLNRNIKDYVSSGVINLDKPSNPSSHEVVAWIKRILRVDK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQ AGKEY+ + +LH A+++ +K+M
Sbjct: 87 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVCVLRLHDALKD-----EKQM--- 138
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T SNLI D G+ W C+A
Sbjct: 139 -------GRALENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRGLGVFWASCEA 191
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG +E D +VT
Sbjct: 192 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGQLTENDNMVTL 232
>gi|28839578|gb|AAH47840.1| Dkc1 protein [Danio rerio]
Length = 497
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 159/228 (69%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HYTPLP G +PL+R I +Y+R+G++NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 53 NFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINLDKPANPSSHEVVAWIKRILRVEK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIV ++RATRLVKSQQSAGKEY+ I +LH+A+EN + ++ +
Sbjct: 113 TGHSGTLDPKVTGCLIVYVERATRLVKSQQSAGKEYVGIVRLHNALENEHQLARALECLT 172
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S LI D GI W+ C+AGTY+R
Sbjct: 173 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLIEYDPERRLGIFWVSCEAGTYIR 222
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E+D LVT + F+H
Sbjct: 223 TLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFDH 270
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMI++GLLDKHGKPN +TP+ +
Sbjct: 380 KASQKKMMIQKGLLDKHGKPNNSTPSDW 407
>gi|389627558|ref|XP_003711432.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
70-15]
gi|351643764|gb|EHA51625.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
70-15]
gi|440468934|gb|ELQ38061.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
Y34]
gi|440480562|gb|ELQ61221.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
P131]
Length = 485
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 145/229 (63%), Gaps = 35/229 (15%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL++RT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 43 NYDKLHIRTGHFTPIPNGSTPLRRDIKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH V
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKVPG------------ 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
G+P A L L A ++P T +S LI D G
Sbjct: 151 -------GEPEF---ARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHLG 200
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+ C+AGTY+RT CVH+GL+LGVGA M ELRR RSG E L T
Sbjct: 201 VFWVSCEAGTYIRTLCVHLGLMLGVGAHMQELRRVRSGAMDETKDLHTL 249
>gi|392571640|gb|EIW64812.1| putative rRNA pseudouridine synthase [Trametes versicolor FP-101664
SS1]
Length = 520
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 153/230 (66%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 NYDKLLVRSAHFTPIPAGCSPLKRDIATYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LHS + + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHSPLSTPTALPRAISTLT 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + G+ W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRVRTIY-ESKLLEFDEKRNLGVFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG SE D +VT M + + + WV
Sbjct: 213 TLCVHLGLILGVGGHMQELRRVRSGALSENDDMVT-----MHDVLDAQWV 257
>gi|356554746|ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
max]
Length = 589
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 157/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+++LNVRT HYTP+P G SPL+R + EY++ G +NLDKP+NPSSHEVVAWIKR+LR EK
Sbjct: 55 NYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEK 114
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ I +LHS V +V+K ++ +
Sbjct: 115 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLT 174
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + ++ ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 175 GAVFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDPDRHLVVFWISCEAGTYVR 224
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG+ M ELRR RSGI E+D +V+ M + + + WV
Sbjct: 225 TMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVS-----MHDVMDAQWV 269
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
+AS KK +I +G LDKHGKPNE TP +L L
Sbjct: 382 RASMKKRLISEGKLDKHGKPNEKTPQEWLRNL 413
>gi|366992157|ref|XP_003675844.1| hypothetical protein NCAS_0C04900 [Naumovozyma castellii CBS 4309]
gi|342301709|emb|CCC69480.1| hypothetical protein NCAS_0C04900 [Naumovozyma castellii CBS 4309]
Length = 475
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 144/210 (68%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPTGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + + + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLGRSLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D + G+ W C+AGTY+RT CVHM
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHM 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D +VT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNMVTL 232
>gi|320040868|gb|EFW22801.1| centromere/microtubule binding protein CBF5 [Coccidioides posadasii
str. Silveira]
Length = 490
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 32 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 92 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 152 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 203 TLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTL 238
>gi|344229205|gb|EGV61091.1| putative rRNA pseudouridine synthase [Candida tenuis ATCC 10573]
gi|344229206|gb|EGV61092.1| hypothetical protein CANTEDRAFT_116369 [Candida tenuis ATCC 10573]
Length = 466
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SPL+R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 28 NYDKLLVRSGHYTPIPSGCSPLKRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRSEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDELKDQKDLGRTLENLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y SNLI D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG E D LVT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGAMDENDNLVTL 233
>gi|444317647|ref|XP_004179481.1| hypothetical protein TBLA_0C01470 [Tetrapisispora blattae CBS 6284]
gi|387512522|emb|CCH59962.1| hypothetical protein TBLA_0C01470 [Tetrapisispora blattae CBS 6284]
Length = 478
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 146/210 (69%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR++HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSSHYTPIPNGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + + + L +
Sbjct: 93 LDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLGRSLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T +SNLI D + G+ W C+AGTY+RT CVH+
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D +VT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNMVTL 232
>gi|68490857|ref|XP_710755.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|68490939|ref|XP_710717.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|3334141|sp|O43101.1|CBF5_CANAL RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5
gi|2737890|gb|AAB94297.1| nucleolar protein CaCbf5p [Candida albicans]
gi|46431954|gb|EAK91469.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|46431996|gb|EAK91507.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|238878534|gb|EEQ42172.1| centromere/microtubule-binding protein CBF5 [Candida albicans WO-1]
Length = 479
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 143/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 29 NYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH + K +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHEQL-------KDDKELN 141
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T S LI D G+ W C+AGTY+R
Sbjct: 142 RALENLTGALFQRPPLISAVKRQL---RVRTVYDSKLIEFDNKRGLGVFWASCEAGTYMR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 199 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 234
>gi|241949831|ref|XP_002417638.1| H/ACA ribonucleoprotein complex subunit, putative;
centromere/microtubule-binding protein, putative; small
nucleolar rnp protein, putative [Candida dubliniensis
CD36]
gi|223640976|emb|CAX45321.1| H/ACA ribonucleoprotein complex subunit, putative [Candida
dubliniensis CD36]
Length = 476
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 29 NYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + ++ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDQLKDDKELNRTLENLT 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D G+ W C+AGTY+R
Sbjct: 149 GALFQR---------PPLISAVKRQLRVRTVY-DSKLIEFDNKRGLGVFWASCEAGTYMR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 199 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 234
>gi|320581659|gb|EFW95878.1| centromere/microtubule-binding protein CBF5 [Ogataea parapolymorpha
DL-1]
Length = 473
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SP +R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 28 NYDKLLVRSGHYTPIPAGSSPHKRDLKNYISSGVINLDKPSNPSSHEVVAWVKRILRVEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+E+ + + +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALEDEKEMGRALESLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S L+ D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTIY-DSKLLEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTL 233
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
A KKK M G LDK G+PNENTP S+ E
Sbjct: 356 ALKKKQMKADGKLDKFGRPNENTPESWKKE 385
>gi|121712588|ref|XP_001273905.1| centromere/microtubule binding protein cbf5 [Aspergillus clavatus
NRRL 1]
gi|119402058|gb|EAW12479.1| centromere/microtubule binding protein cbf5 [Aspergillus clavatus
NRRL 1]
Length = 487
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +GLVT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTL 240
>gi|119182719|ref|XP_001242479.1| centromere/microtubule binding protein CBF5 [Coccidioides immitis
RS]
gi|392865377|gb|EAS31158.2| centromere/microtubule-binding protein cbf5 [Coccidioides immitis
RS]
Length = 490
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 32 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 92 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 152 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 203 TLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTL 238
>gi|303319381|ref|XP_003069690.1| centromere/microtubule-binding protein cbf5, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240109376|gb|EER27545.1| centromere/microtubule-binding protein cbf5, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 490
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 32 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 92 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 152 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 203 TLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTL 238
>gi|358373317|dbj|GAA89916.1| pseudouridylate synthase family protein [Aspergillus kawachii IFO
4308]
Length = 486
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTL 240
>gi|145253867|ref|XP_001398446.1| centromere/microtubule-binding protein cbf5 [Aspergillus niger CBS
513.88]
gi|134084022|emb|CAL00560.1| unnamed protein product [Aspergillus niger]
Length = 485
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTL 240
>gi|350634095|gb|EHA22459.1| rRNA pseudouridine synthase [Aspergillus niger ATCC 1015]
Length = 493
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTL 240
>gi|258571411|ref|XP_002544509.1| centromere/microtubule-binding protein cbf5 [Uncinocarpus reesii
1704]
gi|237904779|gb|EEP79180.1| centromere/microtubule-binding protein cbf5 [Uncinocarpus reesii
1704]
Length = 488
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 32 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 92 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 152 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 203 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 238
>gi|212536058|ref|XP_002148185.1| pseudouridylate synthase family protein [Talaromyces marneffei ATCC
18224]
gi|210070584|gb|EEA24674.1| pseudouridylate synthase family protein [Talaromyces marneffei ATCC
18224]
Length = 481
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 33 NYDQLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 153 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG EEDG+VT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMDEEDGMVTL 239
>gi|169765275|ref|XP_001817109.1| centromere/microtubule-binding protein cbf5 [Aspergillus oryzae
RIB40]
gi|238503428|ref|XP_002382947.1| pseudouridylate synthase family protein [Aspergillus flavus
NRRL3357]
gi|83764963|dbj|BAE55107.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220690418|gb|EED46767.1| pseudouridylate synthase family protein [Aspergillus flavus
NRRL3357]
Length = 488
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + ++ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFRRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E GLVT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENSGLVTL 240
>gi|225562235|gb|EEH10515.1| centromere/microtubule binding protein CBF5 [Ajellomyces capsulatus
G186AR]
Length = 486
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 240
>gi|261190865|ref|XP_002621841.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis SLH14081]
gi|239590885|gb|EEQ73466.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis SLH14081]
Length = 482
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 240
>gi|410730545|ref|XP_003980093.1| hypothetical protein NDAI_0G04320 [Naumovozyma dairenensis CBS 421]
gi|401780270|emb|CCK73417.1| hypothetical protein NDAI_0G04320 [Naumovozyma dairenensis CBS 421]
Length = 483
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 144/210 (68%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPTGSTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + + + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLGRSLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D + G+ W C+AGTY+RT CVHM
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHM 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D +VT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNMVTL 232
>gi|239613209|gb|EEQ90196.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis ER-3]
gi|327354718|gb|EGE83575.1| centromere/microtubule-binding protein cbf5 [Ajellomyces
dermatitidis ATCC 18188]
Length = 489
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 240
>gi|50289049|ref|XP_446954.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526263|emb|CAG59887.1| unnamed protein product [Candida glabrata]
Length = 474
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 144/210 (68%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+ K + + + L +
Sbjct: 93 LDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKDLGRSLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D + G+ W C+AGTY+RT CVH+
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D +VT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNMVTL 232
>gi|237842913|ref|XP_002370754.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
ME49]
gi|211968418|gb|EEB03614.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
ME49]
gi|221482069|gb|EEE20430.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
GT1]
gi|221502546|gb|EEE28273.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
VEG]
Length = 505
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++D+LNVRT HYTPLP G SPL R +Q+YI G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 50 HYDRLNVRTGHYTPLPHGCSPLCRPLQQYINYGAMNLDKPANPSSHEVVAWLKKILRVEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCI+RATRLVKSQQSAGKEY+ I + H+ E+ AK ++ +
Sbjct: 110 TGHSGTLDPKVTGCLLVCINRATRLVKSQQSAGKEYVCIIRFHAKPESKAKVARALETLT 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y S L+ D + W KC+AGTY+R
Sbjct: 170 GALFQR---------PPVVAAVKRQLRIRTIY-ASRLLDYDEQRHMAVFWAKCEAGTYIR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLG GA M ELRR RSG E D LVT
Sbjct: 220 TLCVHLGLVLGCGAHMQELRRVRSGNLGERDHLVTM 255
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK MI GLLDK GKPNE TPAS+L
Sbjct: 377 RASEKKKMILAGLLDKKGKPNEKTPASWL 405
>gi|410083104|ref|XP_003959130.1| hypothetical protein KAFR_0I02150 [Kazachstania africana CBS 2517]
gi|372465720|emb|CCF59995.1| hypothetical protein KAFR_0I02150 [Kazachstania africana CBS 2517]
Length = 463
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 143/210 (68%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + + + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHEAL-------KDEKDLGRSLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D G+ W C+AGTY+RT CVH+
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRGLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D +VT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNMVTL 232
>gi|302652454|ref|XP_003018077.1| hypothetical protein TRV_07913 [Trichophyton verrucosum HKI 0517]
gi|291181682|gb|EFE37432.1| hypothetical protein TRV_07913 [Trichophyton verrucosum HKI 0517]
Length = 494
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|315049135|ref|XP_003173942.1| centromere/microtubule-binding protein cbf5 [Arthroderma gypseum
CBS 118893]
gi|311341909|gb|EFR01112.1| centromere/microtubule-binding protein cbf5 [Arthroderma gypseum
CBS 118893]
Length = 495
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|326468874|gb|EGD92883.1| centromere/microtubule binding protein CBF5 [Trichophyton tonsurans
CBS 112818]
Length = 494
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|302501993|ref|XP_003012988.1| hypothetical protein ARB_00871 [Arthroderma benhamiae CBS 112371]
gi|291176549|gb|EFE32348.1| hypothetical protein ARB_00871 [Arthroderma benhamiae CBS 112371]
Length = 494
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|326480146|gb|EGE04156.1| centromere/microtubule binding protein CBF5 [Trichophyton equinum
CBS 127.97]
Length = 477
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|327301387|ref|XP_003235386.1| centromere/microtubule binding protein CBF5 [Trichophyton rubrum
CBS 118892]
gi|326462738|gb|EGD88191.1| centromere/microtubule binding protein CBF5 [Trichophyton rubrum
CBS 118892]
Length = 494
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT+H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 35 NYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRMLRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 155 SGAL--FQRPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 241
>gi|339241467|ref|XP_003376659.1| putative H/ACA ribonucleoprotein complex subunit 4 [Trichinella
spiralis]
gi|316974612|gb|EFV58096.1| putative H/ACA ribonucleoprotein complex subunit 4 [Trichinella
spiralis]
Length = 529
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 153/229 (66%), Gaps = 24/229 (10%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++++LN R+NH+TP+ G SPL R I++YI AG++NLDKP+NPSSHEVV+WIKRILR K
Sbjct: 65 DYERLNSRSNHFTPIVAGSSPLNRNIKDYISAGFINLDKPANPSSHEVVSWIKRILRVPK 124
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ +FKLH +VE+ K
Sbjct: 125 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCVFKLHGSVES-----------K 173
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
+ +++ + L L A ++P T ++ L+ D + G
Sbjct: 174 RKVVEVYFMLFCFFLLLALERLTGALFQRPPLISAVKRQLRIRTVYENKLLEYDEERNMG 233
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ +KC+AGTYVRT CVH+G +LGVG M ELRR RSG SE+D +VT
Sbjct: 234 VFIVKCEAGTYVRTLCVHLGYILGVGGVMQELRRIRSGHTSEKDNMVTM 282
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSN 156
A KKK MIK GLLD+ GKPNE TP+ + ++ PN K T N
Sbjct: 424 AMKKKQMIKAGLLDEFGKPNERTPSDW-HKIYINPNVKETSESEN 467
>gi|390604771|gb|EIN14162.1| putative rRNA pseudouridine synthase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 534
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G PL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 NYDKLLVRSAHFTPIPSGCPPLKRDITSYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH + + A + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDGLSDPATLPRALQTLT 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEQRNLAVFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 213 TLCVHLGLILGVGGHMQELRRVRSGALSENDDIVTM 248
>gi|242794744|ref|XP_002482438.1| pseudouridylate synthase family protein [Talaromyces stipitatus
ATCC 10500]
gi|218719026|gb|EED18446.1| pseudouridylate synthase family protein [Talaromyces stipitatus
ATCC 10500]
Length = 483
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDQLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTL 240
>gi|149248302|ref|XP_001528538.1| centromere/microtubule-binding protein CBF5 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448492|gb|EDK42880.1| centromere/microtubule-binding protein CBF5 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 476
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 143/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SP R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 28 NYDKLLVRSGHYTPIPAGSSPNNRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +E + ++ +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDQLEEPKELNRALENLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTVY-DSKLIEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 233
>gi|354546883|emb|CCE43615.1| hypothetical protein CPAR2_212590 [Candida parapsilosis]
Length = 474
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++HYTP+P G SP R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 28 NYDKLLVRSSHYTPIPAGSSPNSRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + ++ +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDQLQDPKELNRALENLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTVY-DSKLIEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 233
>gi|412990248|emb|CCO19566.1| predicted protein [Bathycoccus prasinos]
Length = 405
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 147/216 (68%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT HYTP+P G SPL+R I EYIR G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 26 NYDRLMVRTGHYTPIPCGYSPLKRPISEYIRYGVINLDKPANPSSHEVVAWLKRILRVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVK+QQ AGKEY+ I +LH++ ++ + ++ +
Sbjct: 86 TGHSGTLDPKVTGSLIVCIDRATRLVKAQQGAGKEYVCICRLHASPKDGKTSVERAIETL 145
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T S L+ D + + W+ C+AGTY+R
Sbjct: 146 TGALFQ--RPPLISAVKRQLRIR-------TIYASKLLDYDAERNLCVFWVSCEAGTYIR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG+ E D LVT
Sbjct: 197 TLCVHLGLILGVGGHMQELRRVRSGVCDENDNLVTM 232
>gi|448513805|ref|XP_003867014.1| Cbf5 protein [Candida orthopsilosis Co 90-125]
gi|380351352|emb|CCG21576.1| Cbf5 protein [Candida orthopsilosis Co 90-125]
Length = 472
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 144/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G SP R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 28 NYDKLLVRSGHYTPIPAGSSPNSRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH +++ + ++ +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDQLQDPKELNRALENLT 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y S LI D G+ W C+AGTY+R
Sbjct: 148 GALFQR---------PPLISAVKRQLRVRTVY-DSKLIEFDNKRGLGVFWASCEAGTYMR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 198 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 233
>gi|116206688|ref|XP_001229153.1| centromere/microtubule binding protein CBF5 [Chaetomium globosum
CBS 148.51]
gi|88183234|gb|EAQ90702.1| centromere/microtubule binding protein CBF5 [Chaetomium globosum
CBS 148.51]
Length = 485
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 148/217 (68%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+ VR+ H+TP+P G SP +R I+ Y+ +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 40 NYDKMLVRSGHFTPIPNGSSPYKRDIKSYVSSGVINLDKPSNPSSHEVVAWLKRMLRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVK+QQ AGKEY+++ + H + A K +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVAVVRFHDTIPGGEPAFAKALETL 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 160 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVGA M ELRR RSG+ SE++G LVT
Sbjct: 211 TLCVHLGLLLGVGAHMQELRRVRSGVMSEDNGSLVTL 247
>gi|226294376|gb|EEH49796.1| centromere/microtubule-binding protein CBF5 [Paracoccidioides
brasiliensis Pb18]
Length = 491
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPANPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLFEFDNDRHIGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTL 240
>gi|225685065|gb|EEH23349.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides
brasiliensis Pb03]
Length = 491
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPANPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLFEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E DG+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTL 240
>gi|358389708|gb|EHK27300.1| hypothetical protein TRIVIDRAFT_73212 [Trichoderma virens Gv29-8]
Length = 487
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVV+W+KRILR EK
Sbjct: 38 NYDKLLVRTGHFTPIPNGSAPLKRDLKSYISSGVINLDKPSNPSSHEVVSWVKRILRVEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY++I +LH + + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAIIRLHDKLPGGEAQFARALETL 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 158 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 209 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTL 244
>gi|295660569|ref|XP_002790841.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226281394|gb|EEH36960.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 796
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 342 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPANPSSHEVVAWMKRILRVEK 401
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 402 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 461
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 462 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLFEFDNDRHLGVFWVSCEAGTYIR 512
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E DG+VT
Sbjct: 513 TLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTL 548
>gi|378730574|gb|EHY57033.1| centromere/microtubule-binding protein cbf5 [Exophiala dermatitidis
NIH/UT8656]
Length = 508
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPCGCTPLKRDIKSYISSGVINLDKPSNPSSHEVVAWVKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDRLPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDESKGMVTL 240
>gi|156085176|ref|XP_001610071.1| rRNA pseudouridine synthase family protein [Babesia bovis T2Bo]
gi|154797323|gb|EDO06503.1| rRNA pseudouridine synthase, putative family protein [Babesia
bovis]
Length = 418
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTPLP G SPL R ++ YI+ G++NLDKP+NPSSHE V+WIKRILRCEK
Sbjct: 29 NYDKLNVRTGHYTPLPHGSSPLCRDLRNYIKYGFINLDKPANPSSHETVSWIKRILRCEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VCIDRATRLVKSQQ+ GKEY++I K HS E+ K K +
Sbjct: 89 TGHSGTLDPKVTGVLLVCIDRATRLVKSQQTHGKEYVAIVKFHSLPESRFKVEKALQTLS 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T ++ ++ D + W++C+AGT
Sbjct: 149 GCLFQR-------------PPLISAVKRQLRVRTIHETKILDYDESRCMATFWVRCEAGT 195
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT C+H+GL+LG GA M ELRR +SG SE D +VT
Sbjct: 196 YIRTLCIHLGLLLGCGAHMQELRRVKSGHISEYDNMVTM 234
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A++KK + GLLD+HGKPNE TPAS+
Sbjct: 356 RATEKKRLQSAGLLDEHGKPNEKTPASW 383
>gi|322701225|gb|EFY92975.1| hypothetical protein MAC_00758 [Metarhizium acridum CQMa 102]
Length = 487
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R I+ Y+ +G +NLDKPSNPSSHEVV+W+KRILR EK
Sbjct: 37 NYDKLLVRTGHFTPIPNGCSPLKRDIKSYVSSGVINLDKPSNPSSHEVVSWVKRILRVEK 96
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 97 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHD------KLPGGQAQLA 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 151 RALETLTGALFQRPPLISAVKRQL---RVRTIYESKLIEFDNDRHLGVFWVSCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 208 TLCVHLGLLLGVGAHMQELRRVRSGAMDENKHLVTL 243
>gi|254582801|ref|XP_002499132.1| ZYRO0E04576p [Zygosaccharomyces rouxii]
gi|186703752|emb|CAQ43442.1| H/ACA ribonucleoprotein complex subunit 4 [Zygosaccharomyces
rouxii]
gi|238942706|emb|CAR30877.1| ZYRO0E04576p [Zygosaccharomyces rouxii]
Length = 498
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 142/210 (67%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
+R+ HYTP+P G SP +R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 MRSGHYTPIPAGSSPGKRDIKSYVNSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+++ + + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRSLESLTGALFQR 152
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++ ++ + Y SNLI D + G+ W C+AGTY+RT CVH+
Sbjct: 153 ---------PPLISAVKRQLRVRTIY-DSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D LVT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNLVTL 232
>gi|323454706|gb|EGB10576.1| hypothetical protein AURANDRAFT_23304, partial [Aureococcus
anophagefferens]
Length = 374
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++DKLNVRT HYTP+P G SPL+R + EY+R G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 45 DYDKLNVRTAHYTPIPSGCSPLKRPLAEYLRYGCINLDKPANPSSHEVVAWIKRILRVEK 104
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQSAGKEY+++ +LH + K +K
Sbjct: 105 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVAVLRLHGPCD--------KAKLK 156
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + G + P ++ ++ + Y S+L+ D + +KC+AGTY+R
Sbjct: 157 RAVETLTGALFQRPP--LISAVKRQLRIRTVY-ASSLLEYDAERHLAVFHVKCEAGTYIR 213
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++GVG M ELRR RSG E LVT
Sbjct: 214 TLCVHLGLLVGVGGHMQELRRVRSGALDENAHLVTM 249
>gi|156102170|ref|XP_001616778.1| tRNA pseudouridine synthase [Plasmodium vivax Sal-1]
gi|148805652|gb|EDL47051.1| tRNA pseudouridine synthase, putative [Plasmodium vivax]
Length = 478
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 154/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 36 NYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 95
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 96 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSLEE-------VK 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + HG + P + + + T S L+ D T + + W+KCQAGTY+R
Sbjct: 149 LVLNNFHGAIFQRPPLICAVKRQL---RVRTIYDSKLLDYDDTNNVCVFWVKCQAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T +H+ T
Sbjct: 206 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDT 253
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
++ +KK +I GLLDKHGKPNE TP S++
Sbjct: 363 RSMEKKKLILAGLLDKHGKPNEKTPLSWI 391
>gi|300175686|emb|CBK21229.2| unnamed protein product [Blastocystis hominis]
Length = 459
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 160/230 (69%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR+ HYTP+P G SPL R +++YI G +NLDKP+NPSSHEVVAW+KRILRCE+
Sbjct: 52 NYDKLNVRSYHYTPIPVGNSPLNRPLKDYISYGCINLDKPANPSSHEVVAWVKRILRCER 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+CIDRATRL KSQQ AGKEY+SI +LH+A++N +M +K
Sbjct: 112 TGHSGTLDPKVTGCLIICIDRATRLAKSQQGAGKEYVSIVRLHNAIDN-------EMQLK 164
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P +A ++ + Y +S LI D G W+ CQAGTY+R
Sbjct: 165 QALEKLTGALFQRPP--LIAAVKRQLRIRTIY-ESKLIEYDPKEQLGAFWVSCQAGTYIR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG +E DG+VT M + + + WV
Sbjct: 222 TLCVHLGLLLGVGGHMQELRRVRSGNITENDGIVT-----MHDVLDAQWV 266
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KKK MI GLLDK+GKPNE TPA +
Sbjct: 380 AQKKKQMIASGLLDKNGKPNEKTPAEW 406
>gi|300122324|emb|CBK22896.2| unnamed protein product [Blastocystis hominis]
Length = 474
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 160/230 (69%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR+ HYTP+P G SPL R +++YI G +NLDKP+NPSSHEVVAW+KRILRCE+
Sbjct: 52 NYDKLNVRSYHYTPIPVGNSPLNRPLKDYISYGCINLDKPANPSSHEVVAWVKRILRCER 111
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+CIDRATRL KSQQ AGKEY+SI +LH+A++N +M +K
Sbjct: 112 TGHSGTLDPKVTGCLIICIDRATRLAKSQQGAGKEYVSIVRLHNAIDN-------EMQLK 164
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P +A ++ + Y +S LI D G W+ CQAGTY+R
Sbjct: 165 QALEKLTGALFQRPP--LIAAVKRQLRIRTIY-ESKLIEYDPKEQLGAFWVSCQAGTYIR 221
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG +E DG+VT M + + + WV
Sbjct: 222 TLCVHLGLLLGVGGHMQELRRVRSGNITENDGIVT-----MHDVLDAQWV 266
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KKK MI GLLDK+GKPNE TPA +
Sbjct: 380 AQKKKQMIASGLLDKNGKPNEKTPAEW 406
>gi|358401374|gb|EHK50680.1| hypothetical protein TRIATDRAFT_129766 [Trichoderma atroviride IMI
206040]
Length = 487
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 142/216 (65%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D L VRT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVV+W+KRILR EK
Sbjct: 38 NYDNLLVRTGHFTPIPNGSAPLKRDIKSYISSGVINLDKPSNPSSHEVVSWVKRILRVEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY++I +LH + + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAIIRLHDKLPGGQAQFARALETL 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 158 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 209 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTL 244
>gi|322703491|gb|EFY95099.1| hypothetical protein MAA_09426 [Metarhizium anisopliae ARSEF 23]
Length = 484
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R I+ YI +G +NLDKPSNPSSHEVV+W+KRILR EK
Sbjct: 37 NYDKLLVRTGHFTPIPNGCSPLKRDIKSYISSGVINLDKPSNPSSHEVVSWVKRILRVEK 96
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 97 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHD------KLPGGQAQLA 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 151 RALETLTGALFQRPPLISAVKRQL---RVRTIYESKLIEFDNDRHLGVFWVSCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +VT
Sbjct: 208 TLCVHLGLLLGVGAHMQELRRVRSGAMDENKHMVTL 243
>gi|403363097|gb|EJY81286.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 501
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 142/219 (64%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNV+TNH+TPLP G SP R + E+ R G +NLDKPSNPSSHEVVAWIKRIL+ +K
Sbjct: 53 NYDKLNVKTNHFTPLPCGWSPTNRPLLEHKRYGVINLDKPSNPSSHEVVAWIKRILKVDK 112
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+ ATRLVK+QQSAGKEY++I KLH VE K +
Sbjct: 113 TGHSGTLDPKVTGCLIVCINNATRLVKAQQSAGKEYVAIVKLHQHVEKTKTLEKAIQSL- 171
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
N P L +A K+ T ++ L D+ I WL C+AGT
Sbjct: 172 ------------NGPVFQRPPLISAVKKELRVRTIYETKLYEHDIKRDMAIFWLSCEAGT 219
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+G +LG GA M ELRR RSG E+D + T
Sbjct: 220 YVRTMCVHIGYLLGCGAHMQELRRVRSGALKEDDTMATM 258
>gi|340522839|gb|EGR53072.1| predicted protein [Trichoderma reesei QM6a]
Length = 484
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D L VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVV+W+KRILR EK
Sbjct: 35 NYDNLLVRTGHFTPIPNGSAPLKRDLKSYISSGVINLDKPSNPSSHEVVSWVKRILRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY++I +LH + + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAIIRLHDKLPGGQAQFARALETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 155 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 206 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTL 241
>gi|124808563|ref|XP_001348347.1| pseudouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23497239|gb|AAN36786.1| pseudouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 466
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+RT+H+TPLP G SP R I+EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 30 NYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 90 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSIEE-------VK 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + G + P + + + T S L+ D T + + W+KCQAGTY+R
Sbjct: 143 LVLNNFQGAIFQRPPLICAVKRQL---RVRTIYDSKLLDYDETNNVCVFWVKCQAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T ++I T
Sbjct: 200 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYDT 247
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
++ +KK +I GLLDK+GKPNE TP S++ AP
Sbjct: 357 RSMEKKKLILAGLLDKYGKPNEKTPLSWIKSEGYAP 392
>gi|320165785|gb|EFW42684.1| H/ACA ribonucleoprotein complex subunit 4 [Capsaspora owczarzaki
ATCC 30864]
Length = 536
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 153/216 (70%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+P G SPL+R I EY+R G +NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 78 NYDQLNVRTGHYTPIPSGCSPLKRPIDEYVRYGILNLDKPANPSSHEVVAWIRRILRVEK 137
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+ I +LH A+EN K ++ +
Sbjct: 138 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYLGIVRLHGAIENEQKLARSIETLT 197
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + G+ W+ C+AGTY+R
Sbjct: 198 GALFQR---------PPLISAVKRQLRIRTIY-ESKLIEYDPSRHLGVFWVSCEAGTYIR 247
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG+ +E D LVT
Sbjct: 248 TLCVHLGLLLGVGGHMQELRRVRSGVLTENDHLVTM 283
>gi|340374276|ref|XP_003385664.1| PREDICTED: centromere/microtubule-binding protein cbf5-like
[Amphimedon queenslandica]
Length = 491
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 144/216 (66%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ K+ VRT HYTPL G PL+R I +Y++ G++NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 42 NYHKMVVRTGHYTPLETGCPPLRRPIGDYVKHGFINLDKPANPSSHEVVAWIKRILRVEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP+ +GCLIVCIDR TRLVKSQQ AGKEY+ + K H AK S +++
Sbjct: 102 TGHSGTLDPQVTGCLIVCIDRTTRLVKSQQGAGKEYVCVVKFHKE----AKESDIVKILQ 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ +P + + T ++ L+ D G+ W+ C+AGTY+R
Sbjct: 158 TMVGSLFQRPPLISAVKRQLRIR-------TIYENKLLEYDDQRHLGVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++GVGA M ELRR RSGIQSE D LVT
Sbjct: 211 TLCVHLGLMVGVGAHMAELRRVRSGIQSENDDLVTM 246
>gi|389585788|dbj|GAB68518.1| tRNA pseudouridine synthase [Plasmodium cynomolgi strain B]
Length = 450
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 32 NYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 92 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSLEE-------VK 144
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + HG + P + + + T S L+ D + + W+KCQAGTY+R
Sbjct: 145 LVLNNFHGAIFQRPPLICAVKRQL---RVRTIYDSKLLDYDDANNVCVFWVKCQAGTYIR 201
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T +H+ T
Sbjct: 202 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDT 249
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 110 AKASKKKMMIKQGLLDKHGKPNENTPASYL 139
++ +KK +I GLLDK+GKPNE TP S++
Sbjct: 358 TRSMEKKKLILAGLLDKYGKPNEKTPLSWI 387
>gi|312373002|gb|EFR20835.1| hypothetical protein AND_19384 [Anopheles darlingi]
Length = 500
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 149/228 (65%), Gaps = 39/228 (17%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVR+NHYTPLPFG SPL R I++Y+ AG++NLDKPSNPSSHEVVAWIKRIL+ +K
Sbjct: 58 NFDRLNVRSNHYTPLPFGASPLNRKIKDYVTAGFINLDKPSNPSSHEVVAWIKRILKVDK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY+++FKLHS VE VAK +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVFKLHSGVEKVAK-------VT 170
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P +A ++ + Y S L+ D + G+ W
Sbjct: 171 QGLEKLRGALFQRPP--LIAAVKRQLRVRTVY-DSKLLDYDDVRNMGVFW---------- 217
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
M+ELRR RSGIQSE+DG+VT ++++E+
Sbjct: 218 ---------------MLELRRVRSGIQSEKDGMVTMHDVLDAQYLYEN 250
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
KAS KK +I G LDK GKPNENTP +L
Sbjct: 360 KASMKKQLIASGKLDKFGKPNENTPKEWL 388
>gi|221060356|ref|XP_002260823.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H]
gi|193810897|emb|CAQ42795.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 475
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 32 NYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 92 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSLEE-------VK 144
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + HG + P + + + T S L+ D + + W+KCQAGTY+R
Sbjct: 145 LVLNNFHGAIFQRPPLICAVKRQL---RVRTIYDSKLLDFDDANNVCVFWVKCQAGTYIR 201
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T +H+ T
Sbjct: 202 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDT 249
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
++ +KK +I GLLDK+GKPNE TP S++
Sbjct: 359 RSMEKKKLILAGLLDKYGKPNEKTPLSWI 387
>gi|325091764|gb|EGC45074.1| centromere/microtubule binding protein CBF5 [Ajellomyces capsulatus
H88]
Length = 490
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 144/220 (65%), Gaps = 13/220 (5%)
Query: 1 NFDK----LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL 56
N+DK L VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRIL
Sbjct: 34 NYDKRKFLLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRIL 93
Query: 57 RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKK 116
R EKTGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + +
Sbjct: 94 RVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARA 153
Query: 117 MMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAG 176
+ G L +P + + T +S L D G+ W+ C+AG
Sbjct: 154 LETLTGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAG 204
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
TY+RT CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 205 TYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 244
>gi|336266744|ref|XP_003348139.1| hypothetical protein SMAC_03984 [Sordaria macrospora k-hell]
gi|380091075|emb|CCC11281.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 478
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 146/217 (67%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT H+TP+P G SP +R I+ Y+ +G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 27 NYSNLLVRTGHFTPIPAGSSPSKRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRMLRVEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVK+QQ AGKEY+ + + H +V A +
Sbjct: 87 TGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVCVIRFHDSVPGGEAAFASALETL 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D G+ W+ C+AGTY+R
Sbjct: 147 TGALFQR--------PPLISAVKRQLRIRSIY-ESKLIEFDNDRHLGVFWVSCEAGTYIR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVGA M ELRR RSGI SE++G +VT
Sbjct: 198 TLCVHLGLLLGVGAHMQELRRVRSGIMSEDNGSMVTL 234
>gi|85099653|ref|XP_960827.1| centromere/microtubule-binding protein CBF5 [Neurospora crassa
OR74A]
gi|28922353|gb|EAA31591.1| centromere/microtubule-binding protein CBF5 [Neurospora crassa
OR74A]
gi|28950091|emb|CAD70854.1| probable CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 [Neurospora
crassa]
gi|336472631|gb|EGO60791.1| hypothetical protein NEUTE1DRAFT_127587 [Neurospora tetrasperma
FGSC 2508]
gi|350294136|gb|EGZ75221.1| centromere/microtubule-binding protein CBF5 [Neurospora tetrasperma
FGSC 2509]
Length = 480
Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 146/217 (67%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT H+TP+P G SP +R I+ Y+ +G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 29 NYSNLLVRTGHFTPIPAGSSPSKRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRMLRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVK+QQ AGKEY+ + + H +V A +
Sbjct: 89 TGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVCVIRFHDSVPGGEAAFASALETL 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y +S LI D G+ W+ C+AGTY+R
Sbjct: 149 TGALFQR--------PPLISAVKRQLRIRSIY-ESKLIEFDNDRHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVGA M ELRR RSGI SE++G +VT
Sbjct: 200 TLCVHLGLLLGVGAHMQELRRVRSGIMSEDNGSMVTL 236
>gi|340904971|gb|EGS17339.1| centromere/microtubule binding protein cbf5-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 1010
Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 146/218 (66%), Gaps = 11/218 (5%)
Query: 1 NFDKLNVRTNHYTPLP-FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCE 59
N+DK+ +RT+H+TP+P G +P R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR +
Sbjct: 565 NYDKMLIRTSHFTPIPDHGSAPWSRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVD 624
Query: 60 KTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMI 119
KTGHSGTLDPK +GCLIVCIDRATRLVK+QQ AGKEY+ + H V A K +
Sbjct: 625 KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVCCIRFHDTVPGGEPAFAKALET 684
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
G L + +P + + T KS L+ D G+ W+ C+AGTY+
Sbjct: 685 LTGALFQ--RPPLISAVKRQLRIR-------TIHKSRLLEFDNERHLGVFWVSCEAGTYI 735
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
RT CVH+GL+LGVGA M ELRR RSG+ SE+DG LVT
Sbjct: 736 RTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGSLVTL 773
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
AS+KK + GLLDK+G+PNE TPAS+L
Sbjct: 896 ASEKKKLKASGLLDKYGRPNEKTPASWL 923
>gi|448115067|ref|XP_004202740.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
gi|359383608|emb|CCE79524.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 139/210 (66%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPTGCSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I KLH +++ SK + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVKLHDELKDAKDLSKSLENLTGALFQR 152
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++ ++ + Y S LI D G+ W C+AGTY+RT CVH+
Sbjct: 153 ---------PPLISAVKRQLRVRTIY-DSKLIEFDNKRGLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG E LVT
Sbjct: 203 GMLLGVGGHMQELRRVRSGAMDENSNLVTL 232
>gi|255943739|ref|XP_002562637.1| Pc20g00750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587372|emb|CAP85404.1| Pc20g00750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 142/216 (65%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++KL VRT H+TP+P G SPL R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 33 NYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRSEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFVRALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S D G+ W+ C+AGTY+R
Sbjct: 153 TGALFQ--RPPLISAVKRQLRIR-------TIHESKNYEFDNERHLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +G+VT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMGEGEGMVTL 239
>gi|82595579|ref|XP_725907.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481090|gb|EAA17472.1| unknown protein-related [Plasmodium yoelii yoelii]
Length = 4236
Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 154/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+R++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 3806 NYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 3865
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 3866 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSIEE-------VK 3918
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + G + P + + + T +S L+ D T + + W++CQAGTY+R
Sbjct: 3919 LVLNNFQGAIFQRPPLICAVKRQL---RVRTIYESKLLDYDDTNNLCVFWVRCQAGTYIR 3975
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T ++I T
Sbjct: 3976 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDIMDAQYIYDT 4023
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
++ +KK +I GLLDK+GKPNE TP S++ AP
Sbjct: 4133 RSMEKKKLILAGLLDKYGKPNEKTPISWIKSEGYAP 4168
>gi|320587203|gb|EFW99683.1| centromere microtubule-binding protein cbf5 [Grosmannia clavigera
kw1407]
Length = 474
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD L +RT H+TP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 32 NFDNLLIRTGHFTPIPHGSSPLRRDLKSYVSSGVINLDKPSNPSSHEVVAWVKRILRVEK 91
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH V + +
Sbjct: 92 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIARLHGRVPG------GEPQVA 145
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y +S +I D + W C+AGTY+R
Sbjct: 146 QALETLTGALFQRPP--LISAVKRQLRIRSIY-ESKVIEFDNDRGLFVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 203 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 238
>gi|8572671|gb|AAF77119.1|AF234319_1 Cbf5p [Euglena gracilis]
Length = 467
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR+ HYTP+P G +PL+R I+ Y++ G +NLDKPSNPSSHEVV+W+KRIL+ EK
Sbjct: 34 NYDKLNVRSAHYTPIPQGHTPLKRPIKAYLQYGCLNLDKPSNPSSHEVVSWLKRILKVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G L++CI+RATRLVKSQQ+AGKEY+ + +LH A+++ A+ +
Sbjct: 94 TGHAGTLDPKVTGSLLICIERATRLVKSQQNAGKEYVGVLRLHDALKDEAQ-------LL 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L D G + P +A ++ + Y +S L+ D + W+ C+AGTYVR
Sbjct: 147 KALEDLTGAVFQRPPV--VAAVKRTLRIRTIY-ESKLLDFDNDRHLAVFWISCEAGTYVR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G VLG M ELRR R+G E DG+VT
Sbjct: 204 TLCVHLGFVLGTAGHMAELRRTRTGHLGENDGMVTM 239
>gi|68067978|ref|XP_675908.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495353|emb|CAH99624.1| conserved hypothetical protein [Plasmodium berghei]
Length = 456
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 154/228 (67%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+R++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 28 NYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GKEY+ + K HS +++ + +K
Sbjct: 88 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVCKFHSKPKSIEE-------VK 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + G + P + + + T +S L+ D T + + W++CQAGTY+R
Sbjct: 141 LVLNNFQGAIFQRPPLICAVKRQL---RVRTIYESKLLDYDDTNNLCVFWVRCQAGTYIR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T C H+GL+LGVGA M ELRR +SG +E D + T ++I T
Sbjct: 198 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDIMDAQYIYDT 245
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
++ +KK +I GLLDK+GKPNE TP S++ AP
Sbjct: 355 RSMEKKKLILAGLLDKYGKPNEKTPISWIKSEGYAP 390
>gi|430813879|emb|CCJ28818.1| unnamed protein product [Pneumocystis jirovecii]
Length = 470
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 147/220 (66%), Gaps = 14/220 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT HYTP+P G SPL+R I+ YI +G +NLDKP+NPSSHEVVAWIKRILRCEK
Sbjct: 35 NYDKLIVRTGHYTPIPHGSSPLKRDIKSYISSGVINLDKPANPSSHEVVAWIKRILRCEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + + H A+ +S+KK
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRFHEAL-----SSEKKF--A 147
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T +S L+ D G+ + C+AGTY+
Sbjct: 148 QCLETLTGALFQRPPLISAVKRQL---RIRTIHESKLLEFDNDRHLGVFRVSCEAGTYIH 204
Query: 181 TY----CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
VH+GL+LGVGA M ELRR RSG SE DG+VT
Sbjct: 205 HVLIFTSVHLGLLLGVGAHMQELRRVRSGCMSEMDGMVTM 244
>gi|425766601|gb|EKV05205.1| Centromere/microtubule-binding protein CBF5 [Penicillium digitatum
PHI26]
gi|425781695|gb|EKV19642.1| Centromere/microtubule-binding protein CBF5 [Penicillium digitatum
Pd1]
Length = 762
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++KL VRT H+TP+P G SPL R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 322 NYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRSEK 381
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 382 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFVRALETL 441
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S D G+ W+ C+AGTY+R
Sbjct: 442 TGALFQ--RPPLISAVKRQLRIR-------TIHESKNYEFDNERHLGVFWVSCEAGTYIR 492
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 493 TLCVHLGLLLGVGAHMQELRRVRSGAMGEGPGMVTL 528
>gi|440638862|gb|ELR08781.1| centromere/microtubule-binding protein cbf5 [Geomyces destructans
20631-21]
Length = 488
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ Y+ +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 36 NYDKLLVRTGHFTPIPNGCTPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWVKRMLRVEK 95
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 96 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 155
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 156 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 206
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E+ +VT
Sbjct: 207 TLCVHLGLLLGVGAHMQELRRVRSGAMDEKVNMVTL 242
>gi|448112515|ref|XP_004202116.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
gi|359465105|emb|CCE88810.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 138/210 (65%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPTGCSPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I KLH +++ K + L +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVKLHDELKDAKDLGKSLENLTGALFQR 152
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++ ++ + Y S LI D G+ W C+AGTY+RT CVH+
Sbjct: 153 ---------PPLISAVKRQLRVRTIY-DSKLIEFDNKRGLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG E LVT
Sbjct: 203 GMLLGVGGHMQELRRVRSGAMDENCNLVTL 232
>gi|294941896|ref|XP_002783294.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239895709|gb|EER15090.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 484
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 142/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLPFG SPL R + +++ G NLDKP NPSSHEVVAWIKRIL+CEK
Sbjct: 49 NYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVCNLDKPVNPSSHEVVAWIKRILKCEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCL+VC++RATRLVK+QQ AGKEY+ + + H+ A ++ +
Sbjct: 109 TGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKEYVCVVRFHADPGGEAAITRALDQLT 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y S L+ D + + C+AGTY+R
Sbjct: 169 GALFQR---------PPVIAAVKRQLRIRTIYW-SKLLDYDEEKHMAVFHVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LGVGA M ELRR RSG E+D LVT
Sbjct: 219 TLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTM 254
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK +I G LD+ G+PNENTP S+L
Sbjct: 376 RASEKKKLILNGKLDEKGRPNENTPESWL 404
>gi|294886569|ref|XP_002771763.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239875525|gb|EER03579.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 467
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 142/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLPFG SPL R + +++ G NLDKP NPSSHEVVAWIKRIL+CEK
Sbjct: 49 NYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVCNLDKPVNPSSHEVVAWIKRILKCEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCL+VC++RATRLVK+QQ AGKEY+ + + H+ A ++ +
Sbjct: 109 TGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKEYVCVVRFHADPGGEAAITRALDQLT 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y S L+ D + + C+AGTY+R
Sbjct: 169 GALFQR---------PPVIAAVKRQLRIRTIYW-SKLLDYDEEKHMAVFHVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LGVGA M ELRR RSG E+D LVT
Sbjct: 219 TLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTM 254
>gi|171692219|ref|XP_001911034.1| hypothetical protein [Podospora anserina S mat+]
gi|170946058|emb|CAP72859.1| unnamed protein product [Podospora anserina S mat+]
Length = 474
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 148/220 (67%), Gaps = 13/220 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR--- 57
++ + VRTNH+TP+P+G +P +R I+ YI +G +NLDKPSNPSSHEVVAW+KR+LR
Sbjct: 29 GYNDMLVRTNHWTPIPYGCAPHKRDIKSYISSGVINLDKPSNPSSHEVVAWLKRMLRYVV 88
Query: 58 CEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM 117
EKTGHSGTLDPK +GCLIVC+DRATRLVK+QQ AGKEY+ + +LH V A + +
Sbjct: 89 VEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVCVIRLHDKVPGGEAAFAQAL 148
Query: 118 MIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGT 177
G L + +P + + T +S LI D G+ W+ C+AGT
Sbjct: 149 ETLTGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGT 199
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
Y+RT CVH+GL+LGVGA M ELRR RSG+ SE+DG LVT
Sbjct: 200 YIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGKLVTL 239
>gi|406864846|gb|EKD17889.1| centromere/microtubule binding protein CBF5 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 503
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT H+TP+P G +PL R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 34 NYTNLLVRTGHFTPIPVGCNPLNRDLKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E G+VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKGMVTL 240
>gi|294949098|ref|XP_002786051.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
gi|239900159|gb|EER17847.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
Length = 486
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 141/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLPFG SPL R + +++ G NLDKP NPSSHEVVAWIKRIL+CEK
Sbjct: 50 NYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVCNLDKPVNPSSHEVVAWIKRILKCEK 109
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCL+VC++RATRLVK+QQ AGKEY+ + + H+ A + +
Sbjct: 110 TGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKEYVCVVRFHADPGGEAAIIRALDQLT 169
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y S L+ D + + C+AGTY+R
Sbjct: 170 GALFQR---------PPVIAAVKRQLRIRTIYW-SKLLDYDEEKHMAVFHVSCEAGTYIR 219
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LGVGA M ELRR RSG E+D LVT
Sbjct: 220 TLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTM 255
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK +I G LD+ G+PNENTP S+L
Sbjct: 377 RASEKKKLILNGKLDEKGRPNENTPESWL 405
>gi|406694863|gb|EKC98182.1| centromere/microtubule binding protein cbf5 [Trichosporon asahii
var. asahii CBS 8904]
Length = 489
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILR +K
Sbjct: 35 NYDKLLVRSSHFTPIPTGCSPLKRDLKTYIESGCINLDKPSNPSSHEVVAWIKRILRVQK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCIDRATRLVKSQQ AGK Y+ + +LH E +A ++ M
Sbjct: 95 TGHSGTLDPLVTGCLIVCIDRATRLVKSQQGAGKSYVVVARLHGKPEGGKQAVERAMETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T S LI D + L C+AGTYVR
Sbjct: 155 TGAL--FQRPPLISAVKRQLRVR-------TIYNSKLIEYDEDRGLVVAQLDCEAGTYVR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T+ VH+GL+LGVGA M ELRR RSGI E D +VT
Sbjct: 206 TWSVHLGLLLGVGAHMQELRRVRSGITGEGDDIVTM 241
>gi|396494996|ref|XP_003844439.1| similar to centromere/microtubule-binding protein cbf5
[Leptosphaeria maculans JN3]
gi|312221019|emb|CBY00960.1| similar to centromere/microtubule-binding protein cbf5
[Leptosphaeria maculans JN3]
Length = 488
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT+HYTP+P G +PL R ++ YI +G +NLDKPSNPSSHEVV+WIKR+LR EK
Sbjct: 33 NYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLDKPSNPSSHEVVSWIKRMLRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 153 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERQLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 239
>gi|294895715|ref|XP_002775270.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
gi|239881344|gb|EER07086.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
Length = 485
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 140/216 (64%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLPFG SPL R + +++ G NLDKP NPSSHEVVAWIKRIL+CEK
Sbjct: 48 NYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVCNLDKPVNPSSHEVVAWIKRILKCEK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCL+VC++RATRLVK+QQ AGKEY+ + + H+ A + +
Sbjct: 108 TGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKEYVCVVRFHADPGGEAAIIRALDQLT 167
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y S L+ D + + C+AGTY+R
Sbjct: 168 GALFQR---------PPVIAAVKRQLRIRTIYW-SKLLDYDEEKHMAVFHVSCEAGTYIR 217
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVHMGL+LGVGA M ELRR RSG E D LVT
Sbjct: 218 TLCVHMGLLLGVGAHMQELRRVRSGNLGERDQLVTM 253
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS+KK +I G LD+ G+PNENTP S+L
Sbjct: 375 RASEKKKLILNGKLDEKGRPNENTPESWL 403
>gi|451854343|gb|EMD67636.1| hypothetical protein COCSADRAFT_34430 [Cochliobolus sativus ND90Pr]
gi|451999418|gb|EMD91880.1| hypothetical protein COCHEDRAFT_1133778 [Cochliobolus
heterostrophus C5]
Length = 495
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 139/216 (64%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT+HYTP+P G +PL R ++ YI +G +NLDKPSNPSSHEVV+WIKR+LR EK
Sbjct: 33 NYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLDKPSNPSSHEVVSWIKRMLRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 153 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNERQLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 239
>gi|189189906|ref|XP_001931292.1| centromere/microtubule-binding protein CBF5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972898|gb|EDU40397.1| centromere/microtubule-binding protein CBF5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 499
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT+HYTP+P G +PL R ++ YI +G +NLDKPSNPSSHEVV+WIKR+LR EK
Sbjct: 33 NYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLDKPSNPSSHEVVSWIKRMLRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 153 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERQLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 239
>gi|330934014|ref|XP_003304379.1| hypothetical protein PTT_16958 [Pyrenophora teres f. teres 0-1]
gi|311319015|gb|EFQ87515.1| hypothetical protein PTT_16958 [Pyrenophora teres f. teres 0-1]
Length = 499
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ L VRT+HYTP+P G +PL R ++ YI +G +NLDKPSNPSSHEVV+WIKR+LR EK
Sbjct: 33 NYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLDKPSNPSSHEVVSWIKRMLRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 93 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETL 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 153 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNERQLGVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E LVT
Sbjct: 204 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTL 239
>gi|407923102|gb|EKG16190.1| Pseudouridine synthase/archaeosine transglycosylase [Macrophomina
phaseolina MS6]
Length = 489
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ + R+NH+ P+P G +P +R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYSHMLSRSNHFVPIPHGCAPHKRDLKSYISSGVINLDKPSNPSSHEVVAWVKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG SE+D +VT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMSEQDNMVTL 240
>gi|401885502|gb|EJT49616.1| centromere/microtubule binding protein cbf5 [Trichosporon asahii
var. asahii CBS 2479]
Length = 550
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILR +K
Sbjct: 35 NYDKLLVRSSHFTPIPTGCSPLKRDLKTYIESGCINLDKPSNPSSHEVVAWIKRILRVQK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCIDRATRLVKSQQ AGK Y+ + +LH E +A ++ M
Sbjct: 95 TGHSGTLDPLVTGCLIVCIDRATRLVKSQQGAGKSYVVVARLHGKPEGGKQAVERAMETL 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T S LI D + L C+AGTYVR
Sbjct: 155 TGALFQ--RPPLISAVKRQLRVR-------TIYNSKLIEYDEDRGLVVAQLDCEAGTYVR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T+ VH+GL+LGVGA M ELRR RSGI E D +VT
Sbjct: 206 TWSVHLGLLLGVGAHMQELRRVRSGITGEGDDIVTM 241
>gi|168053355|ref|XP_001779102.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669462|gb|EDQ56048.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 544
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/230 (51%), Positives = 158/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTPLP G +PL+R + +Y+R G +NLDKP+NPSSHEVVAWI+R+LR +K
Sbjct: 62 NYDKLNVRTGHYTPLPTGHTPLKRPLHDYVRYGVINLDKPANPSSHEVVAWIRRMLRVDK 121
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVK+QQ AGKEY+ + +LHSAVE+VAK ++ +
Sbjct: 122 TGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKEYVCVARLHSAVESVAKVAQAIETLT 181
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + W+ C+AGTY+R
Sbjct: 182 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDAERHLVVFWVSCEAGTYIR 231
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI E+D LVT M + + + WV
Sbjct: 232 TLCVHLGLLLGVGGHMQELRRVRSGILGEKDNLVT-----MHDVLDAQWV 276
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
+A KK MI GLLDKHGKPNE TPA +L E
Sbjct: 389 RAMTKKKMISDGLLDKHGKPNEKTPAEWLRE 419
>gi|168053405|ref|XP_001779127.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669487|gb|EDQ56073.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 475
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/230 (51%), Positives = 158/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTPLP G +PL+R + +Y+R G +NLDKP+NPSSHEVVAWI+R+LR +K
Sbjct: 62 NYDKLNVRTGHYTPLPTGHTPLKRPLHDYVRYGVINLDKPANPSSHEVVAWIRRMLRVDK 121
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVK+QQ AGKEY+ + +LHSAVE+VAK ++ +
Sbjct: 122 TGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKEYVCVARLHSAVESVAKVAQAIETLT 181
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + W+ C+AGTY+R
Sbjct: 182 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEYDAERHLVVFWVSCEAGTYIR 231
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI E+D LVT M + + + WV
Sbjct: 232 TLCVHLGLLLGVGGHMQELRRVRSGILGEKDNLVT-----MHDVLDAQWV 276
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+A KK MI GLLDKHGKPNE TPA +L
Sbjct: 389 RAMTKKKMISDGLLDKHGKPNEKTPAEWL 417
>gi|388583038|gb|EIM23341.1| putative rRNA pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 486
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 157/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+NHYTPLPFG SPL+R + YI++G +NLDKPSNPSSHEVVAWI+R+LR EK
Sbjct: 35 NYDKLLVRSNHYTPLPFGCSPLKRDLVTYIKSGVINLDKPSNPSSHEVVAWIRRMLRTEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +++ A + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDKLQDPAALPRAIETLT 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +SNLI D + W+ C+AGTY+R
Sbjct: 155 GALFQR---------PPLISAVKRQLRIRTIY-ESNLIEFDNDRGLAVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG SE+D +V+ M + + + W+
Sbjct: 205 TLCVHLGLLLGVGGHMQELRRVRSGAMSEDDDIVS-----MHDVLDAQWI 249
>gi|169612299|ref|XP_001799567.1| hypothetical protein SNOG_09268 [Phaeosphaeria nodorum SN15]
gi|160702476|gb|EAT83460.2| hypothetical protein SNOG_09268 [Phaeosphaeria nodorum SN15]
Length = 497
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 144/240 (60%), Gaps = 22/240 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N + VRT+HYTP+P G +PL R I+ YI +G +NLDKPSNPSSHEVV+W+KR+LR EK
Sbjct: 38 NMPAVLVRTSHYTPIPQGCAPLSRDIKSYISSGVINLDKPSNPSSHEVVSWVKRMLRVEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + ++H + + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRMHDKLPGGEAQFARALETL 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 158 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNERQLGVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF-------------RQEHMFEHIVS 227
T CVH+GL+LGVGA M ELRR RSG E LVT R E H++S
Sbjct: 209 TLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLHDNNRDESYLRHVIS 268
>gi|124783623|gb|ABN14933.1| putative centromere/microtubule binding protein [Taenia asiatica]
Length = 253
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/212 (51%), Positives = 140/212 (66%), Gaps = 10/212 (4%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
+NVR H+ P G SPL R + EYI+ G +NLDKPSNP SHEVVAW+KR L+ EKTGHS
Sbjct: 44 MNVRDCHFEPSERGYSPLNRPLTEYIKHGVINLDKPSNPPSHEVVAWVKRALKVEKTGHS 103
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDPK +GCLIVCIDR+TRLVKSQQ+AGK YI+IF+LH N+ + + +K L
Sbjct: 104 GTLDPKVTGCLIVCIDRSTRLVKSQQNAGKVYIAIFRLHEGAPNIKRIQQVCEALKGALF 163
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+ P + + T +S+L+ D G++ L C+AGTYVRTYCV
Sbjct: 164 QR-------PPVVSAVRRQL---RIRTIFRSDLLEYDPVKRMGLVRLDCEAGTYVRTYCV 213
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
H+GL+LG G M ELRR RSG+ +EED +VT
Sbjct: 214 HVGLMLGCGGVMEELRRIRSGVLTEEDNMVTM 245
>gi|302761338|ref|XP_002964091.1| hypothetical protein SELMODRAFT_81986 [Selaginella moellendorffii]
gi|300167820|gb|EFJ34424.1| hypothetical protein SELMODRAFT_81986 [Selaginella moellendorffii]
Length = 530
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 158/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D LNVRT HYTPLP G +PL+R + +Y+R G +NLDKPSNPSSHEVVAWIKRILR +K
Sbjct: 65 NYDALNVRTGHYTPLPTGFTPLKRPLFDYVRYGVINLDKPSNPSSHEVVAWIKRILRVDK 124
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVK+QQ AGK+Y+ + +LHSAVE+VAK +
Sbjct: 125 TGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKQYVCVARLHSAVEDVAK-------VA 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL G + P + + + T +S L+ D + W++C+AGTY+R
Sbjct: 178 RGLETLTGALFQRPPLISAVKRQL---RVRTIYQSKLLEFDADKHLVVFWVECEAGTYIR 234
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR +SGI E+D LVT M + + + WV
Sbjct: 235 TLCVHLGLLLGVGGHMQELRRVQSGILGEKDNLVT-----MHDVLDAQWV 279
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS KK MI GLLDKHGKPNE TP +L
Sbjct: 392 RASAKKQMIASGLLDKHGKPNEKTPQEWL 420
>gi|440803036|gb|ELR23950.1| rRNA pseudouridine synthase, putative [Acanthamoeba castellanii
str. Neff]
Length = 523
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/220 (55%), Positives = 153/220 (69%), Gaps = 18/220 (8%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT HYTP+P G SPL+R + +Y+R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 65 NYDKLLVRTGHYTPIPTGHSPLKRPLDDYVRYGVINLDKPSNPSSHEVVAWIKRILRVEK 124
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCI RATRLVKSQQ AGKEY+++ +LHSA++ AK +K +
Sbjct: 125 TGHSGTLDPKVTGCLLVCIQRATRLVKSQQGAGKEYVAVVRLHSAIDEEAKLAKAIETLT 184
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + GI W+ C+AGT
Sbjct: 185 GALFQR-------------PPLIAAVKRRLRVRTIYQSKLVEFDKERNLGIFWVDCEAGT 231
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSE--EDGLVT 215
Y+RT CVH+GL+LGVG M ELRR RSG+ +E +D LVT
Sbjct: 232 YIRTLCVHLGLLLGVGGHMQELRRVRSGLLTENAKDCLVT 271
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A KK +IK G LDK G+PN+NTP+ +
Sbjct: 394 RAQLKKQLIKDGKLDKFGRPNDNTPSEW 421
>gi|449017533|dbj|BAM80935.1| box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin
[Cyanidioschyzon merolae strain 10D]
Length = 425
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 9/217 (4%)
Query: 1 NFDKLNVRTNHYTPLP-FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCE 59
N+D+LNVRT HYTP+P G SPL+R IQEYIR+G +NLDKP+NPSSHEVVAWIKRILR E
Sbjct: 40 NYDRLNVRTTHYTPIPDAGYSPLKRPIQEYIRSGVINLDKPANPSSHEVVAWIKRILRVE 99
Query: 60 KTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMI 119
KTGHSGTLDP+ +GCLIVCI+RATRLVKSQQSAGKEY+++ +LH + +A+ +
Sbjct: 100 KTGHSGTLDPQVTGCLIVCIERATRLVKSQQSAGKEYVAVLRLHGMRPELDEAT-----V 154
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
++ + G + P + + + T +S L+ D + W+ C+AGTY+
Sbjct: 155 RRAIETLTGPLYQRPPLISAVKRQL---RIRTIYESKLLEYDPKRRLVLFWVSCEAGTYI 211
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
RT CVH+GL+LGVG M ELRR RSG+ SE DG+VT
Sbjct: 212 RTLCVHLGLLLGVGGHMQELRRVRSGVHSEYDGMVTM 248
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL---AELEAAPNK 148
AS+KK MI++G LDKHG+PNE+TP+ + ELE+AP++
Sbjct: 371 ASRKKAMIQRGELDKHGRPNEHTPSDWRRVQPELESAPSR 410
>gi|302787318|ref|XP_002975429.1| hypothetical protein SELMODRAFT_232501 [Selaginella moellendorffii]
gi|300157003|gb|EFJ23630.1| hypothetical protein SELMODRAFT_232501 [Selaginella moellendorffii]
Length = 489
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 158/230 (68%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D LNVRT HYTPLP G +PL+R + +Y+R G +NLDKPSNPSSHEVVAWIKRILR +K
Sbjct: 27 NYDALNVRTGHYTPLPTGFTPLKRPLFDYVRYGVINLDKPSNPSSHEVVAWIKRILRVDK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVK+QQ AGK+Y+ + +LHSAVE+VAK ++
Sbjct: 87 TGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKQYVCVARLHSAVEDVAKVAR------ 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
GL G + P + + + T +S L+ D + W++C+AGTY+R
Sbjct: 141 -GLETLTGALFQRPPLISAVKRQL---RVRTIYQSKLLEFDADKHLVVFWVECEAGTYIR 196
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR +SGI E+D LVT M + + + WV
Sbjct: 197 TLCVHLGLLLGVGGHMQELRRVQSGILGEKDNLVT-----MHDVLDAQWV 241
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+AS KK MI GLLDKHGKPNE TP +L
Sbjct: 354 RASAKKQMIASGLLDKHGKPNEKTPQEWL 382
>gi|15230232|ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=CBF5 homolog; AltName: Full=Dyskerin; AltName:
Full=Nopp-140-associated protein of 57 kDa homolog;
Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
homolog
gi|8901186|gb|AAF43210.2|AF234984_1 putative pseudouridine synthase [Arabidopsis thaliana]
gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis thaliana]
gi|28392852|gb|AAO41863.1| unknown protein [Arabidopsis thaliana]
gi|225898727|dbj|BAH30494.1| hypothetical protein [Arabidopsis thaliana]
gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
Length = 565
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+ G SPL+R +QEYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 49 NYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +VAK +
Sbjct: 109 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAK-------VA 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 162 RALESLTGAVFQRPPLISAVKRQL---RIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E + +VT
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTM 254
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+AS KK +I G LDKHGKPNE TP +
Sbjct: 376 RASMKKKLIADGKLDKHGKPNEKTPVEW 403
>gi|154302967|ref|XP_001551892.1| centromere/microtubule binding protein CBF5 [Botryotinia fuckeliana
B05.10]
gi|347832299|emb|CCD47996.1| similar to centromere/microtubule-binding protein cbf5 [Botryotinia
fuckeliana]
Length = 481
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EKTGHSGT
Sbjct: 42 VRTGHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEKTGHSGT 101
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + + G L +
Sbjct: 102 LDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETLTGALFQ 161
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+P + + T +S L D G+ W+ C+AGTY+RT CVH+
Sbjct: 162 --RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHL 212
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GL+LGVGA M ELRR RSG E +VT
Sbjct: 213 GLLLGVGAHMQELRRVRSGAMDETKDMVTL 242
>gi|156048188|ref|XP_001590061.1| hypothetical protein SS1G_08825 [Sclerotinia sclerotiorum 1980]
gi|154693222|gb|EDN92960.1| hypothetical protein SS1G_08825 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 483
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KR+LR EKTGHSGT
Sbjct: 42 VRTGHFTPIPNGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEKTGHSGT 101
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + + G L
Sbjct: 102 LDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKLPGGEAQFARALETLTGAL-- 159
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+P + + T +S L D G+ W+ C+AGTY+RT CVH+
Sbjct: 160 FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHL 212
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GL+LGVGA M ELRR RSG E +VT
Sbjct: 213 GLLLGVGAHMQELRRVRSGAMDETKDMVTL 242
>gi|393218369|gb|EJD03857.1| putative rRNA pseudouridine synthase [Fomitiporia mediterranea
MF3/22]
Length = 525
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R IQ YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSSHFTPIPHGCSPLKRDIQSYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+ +EN + + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHAGLENPSALPRALQTLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTY+R
Sbjct: 161 GALFQR---------PPLISAVKRQLRVRTIY-ESKLLEFDEKRNLAVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 211 TLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTM 246
>gi|297820502|ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
lyrata]
gi|297323972|gb|EFH54393.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
lyrata]
Length = 561
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D LNVRT HYTP+ G SPL+R +QEYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 49 NYDLLNVRTGHYTPISAGYSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +VAK +
Sbjct: 109 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAK-------VA 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 162 RALESLTGAVFQRPPLISAVKRQL---RIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E + +VT
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTM 254
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+AS KK +I G LDKHGKPNE TP +
Sbjct: 376 RASMKKKLIADGKLDKHGKPNEKTPVEW 403
>gi|342183766|emb|CCC93245.1| putative centromere/microtubule binding protein cbf5 [Trypanosoma
congolense IL3000]
Length = 427
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 147/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVR++H+T L G SPL+R + EY++ G +NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 39 NYDKLNVRSSHFTLLECGWSPLRRPLTEYVKYGMINLDKPSNPSSHEVVSWIKRILRCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH AV +KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDAV------GEKKVV-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ +E+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVITEDDHISTM 243
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ ++K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSLVKDGLLDKYGRPQANTPSDWF 393
>gi|384499832|gb|EIE90323.1| H/ACA ribonucleoprotein complex subunit 4 [Rhizopus delemar RA
99-880]
Length = 469
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/219 (54%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+P G SPL+R + EY+R G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 27 NYDQLNVRTGHYTPIPSGSSPLKRPLNEYVRYGIINLDKPANPSSHEVVAWIKRILRVEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I +LH A+E+ K S+ +
Sbjct: 87 TGHSGTLDPKVTGGLIVCVDRATRLVKSQQGAGKEYVCILRLHDAIESEKKLSQAIETLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L+ D + W C+AGT
Sbjct: 147 GALFQR-------------PPLISAVKRQLRVRTIHESKLLEFDNDRHLAVFWASCEAGT 193
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 194 YMRTLCVHLGLLLGVGGHMQELRRVRSGTTSENDDIVTM 232
>gi|307103593|gb|EFN51852.1| hypothetical protein CHLNCDRAFT_37236 [Chlorella variabilis]
Length = 444
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 149/216 (68%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ +LNVR+ HYTP+P G +PL+R +QEY+R G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 27 NYSQLNVRSGHYTPIPSGHTPLRRPLQEYVRYGVINLDKPSNPSSHEVVAWIKRILRVEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+++ +LHS VE A + +
Sbjct: 87 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVAVARLHSKVEGGAAKVARAIETL 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D + + W+ C+AGTYVR
Sbjct: 147 TGALFQ--RPPLISAVKRQLRIR-------TIYQSKLIEYDDERNLVVFWVSCEAGTYVR 197
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E+D ++T
Sbjct: 198 TLCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMITM 233
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A KKK ++ G LDK+G+PNE TP YL L
Sbjct: 356 AQKKKQLVAAGQLDKYGRPNEVTPKEYLRAL 386
>gi|328771089|gb|EGF81129.1| hypothetical protein BATDEDRAFT_16206 [Batrachochytrium
dendrobatidis JAM81]
Length = 474
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 154/230 (66%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT+HYTP+P G +PL+R + YI+ G +NLDKP+NPSSHEVVAWI+RILR EK
Sbjct: 34 NYDKLNVRTSHYTPIPSGCAPLKRDLSTYIKCGVINLDKPANPSSHEVVAWIRRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ + +LH +E S+KK+
Sbjct: 94 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCVLRLHDLIE-----SEKKLA-- 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QG+ G + P L + T +S L D + W+ C+AGTY+R
Sbjct: 147 QGIETLTGALFQRPP---LISAVKRQLRIRTIHESKLYEFDNDRHLAVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG E+D +VT M + + + WV
Sbjct: 204 TLCVHLGLLLGVGGHMQELRRVRSGAMGEDDEMVT-----MHDILDAQWV 248
>gi|443920908|gb|ELU40730.1| centromere/microtubule binding protein cbf5 [Rhizoctonia solani
AG-1 IA]
Length = 516
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 150/216 (69%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R +Q YI++G +NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 37 NYDKLLVRSSHFTPIPQGCSPLKRDLQSYIKSGVINLDKPSNPSSHEVVAWIRRILRVEK 96
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH A+E+ KA + +
Sbjct: 97 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHDALES-EKALPRALETL 155
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L+ D + + W+ C+AGTY+R
Sbjct: 156 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLLEFDNQRNLAVFWVSCEAGTYIR 206
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 207 TLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTM 242
>gi|331243848|ref|XP_003334566.1| H/ACA ribonucleoprotein complex subunit 4 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313556|gb|EFP90147.1| H/ACA ribonucleoprotein complex subunit 4 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 515
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL +R++H+TP+P G SPL+R + EYI+ G +NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 42 NYDKLLIRSSHFTPIPCGSSPLKRPLSEYIKTGVINLDKPSNPSSHEVVAWIRRILRSEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCIDRATRLVKSQQ AGKEY+ + +LH+ +E + +
Sbjct: 102 TGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKEYVCVLRLHAGLET-------EKALS 154
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+GL G + P + + + T ++ LI D I W+ C+AGTY+R
Sbjct: 155 RGLETLTGALFQRPPLISAVKRQL---RIRTIYETKLIEFDNKRHLAIFWVSCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E DG+VT
Sbjct: 212 TLCVHLGLLLGVGGHMQELRRVRSGAMGENDGIVTM 247
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA +KK M+K G LDK+G+ NE TPA++
Sbjct: 369 KAQEKKKMVKTGSLDKYGRANEKTPANW 396
>gi|399215940|emb|CCF72628.1| unnamed protein product [Babesia microti strain RI]
Length = 412
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 145/225 (64%), Gaps = 17/225 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEV-------VAWIK 53
N+ +L+VRT HYTPLP+G SPL R + EYI+ G++N+DKPSNPSSHEV VAWIK
Sbjct: 14 NYGRLHVRTGHYTPLPYGSSPLNRPLTEYIKYGFINVDKPSNPSSHEVTRRITQVVAWIK 73
Query: 54 RILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKAS 113
RIL+CEKTGHSGTLDPK +G L+VC++RATRL GKEY+ + + H VE+
Sbjct: 74 RILKCEKTGHSGTLDPKVTGVLLVCLNRATRLASHNFILGKEYVGVVRFHGKVES----- 128
Query: 114 KKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKC 173
K I++ L G + P + + + T ++ L+ D W+KC
Sbjct: 129 --KNAIEKALETLTGACFQRPPLICAVKRQL---RIRTIYETKLLDYDQERDLAAFWIKC 183
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+AGTYVRT+CVH+GL++GVGA M ELRR +SG SE+D +VT +
Sbjct: 184 EAGTYVRTFCVHLGLLIGVGAHMQELRRIKSGHLSEDDNMVTLHE 228
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+A++KK MI GLLD HG+PN TP +L
Sbjct: 348 RATEKKKMILAGLLDSHGRPNAQTPHQWL 376
>gi|293333377|ref|NP_001168887.1| uncharacterized protein LOC100382692 [Zea mays]
gi|223973499|gb|ACN30937.1| unknown [Zea mays]
Length = 487
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 40 NYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETL 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 160 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E GLVT
Sbjct: 211 TLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTL 246
>gi|342875987|gb|EGU77652.1| hypothetical protein FOXB_11827 [Fusarium oxysporum Fo5176]
Length = 487
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 40 NYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETL 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 160 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 210
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E GLVT
Sbjct: 211 TLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTL 246
>gi|261331934|emb|CBH14927.1| centromere/microtubule binding protein cbf5,putative [Trypanosoma
brucei gambiense DAL972]
Length = 427
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 147/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVR++H+T L G SPL+R + +Y++ G +NLDKPSNPSSHEVV+WIKRIL+CEK
Sbjct: 39 NYDRLNVRSSHFTVLDCGWSPLRRPLSQYVKYGMINLDKPSNPSSHEVVSWIKRILKCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH V S+KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTV------SEKKVV-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVISEDDHISTM 243
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRTMMKDGLLDKYGRPQANTPSDWF 393
>gi|71746444|ref|XP_822277.1| centromere/microtubule binding protein [Trypanosoma brucei TREU927]
gi|70831945|gb|EAN77449.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 427
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 147/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVR++H+T L G SPL+R + +Y++ G +NLDKPSNPSSHEVV+WIKRIL+CEK
Sbjct: 39 NYDRLNVRSSHFTVLDCGWSPLRRPLSQYVKYGMINLDKPSNPSSHEVVSWIKRILKCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH V S+KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTV------SEKKVVAS 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 153 ---LQRLTGPCFQRPP-LIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVISEDDHISTM 243
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRTMMKDGLLDKYGRPQANTPSDWF 393
>gi|213410128|ref|XP_002175834.1| centromere/microtubule-binding protein cbf5 [Schizosaccharomyces
japonicus yFS275]
gi|212003881|gb|EEB09541.1| centromere/microtubule-binding protein cbf5 [Schizosaccharomyces
japonicus yFS275]
Length = 478
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT HYTP+P G +PL+R IQ Y+ +G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 33 NYDKLLVRTGHYTPIPSGCNPLKRDIQSYVSSGVINLDKPANPSSHEVVAWVKKILRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+C DRATRLVKSQQSAGKEY+ + +LH A++N K + +
Sbjct: 93 TGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDAIDNERKMASAIETLT 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y KS+LI D + + W C+AGTY+R
Sbjct: 153 GALFQR---------PPLISAVKRQLRIRNVY-KSDLIEFDKERNLAVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 203 TLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTM 238
>gi|302911071|ref|XP_003050412.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731349|gb|EEU44699.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 486
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 39 NYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 99 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETL 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 159 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E GLVT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGAMDETKGLVTL 245
>gi|358056117|dbj|GAA97857.1| hypothetical protein E5Q_04537 [Mixia osmundae IAM 14324]
Length = 518
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R + YI++G +NLDKPSNPSSHEVVAWI+RILRCEK
Sbjct: 42 NYDKLLVRSAHFTPIPSGSSPLKRDLASYIQSGVINLDKPSNPSSHEVVAWIRRILRCEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL VCIDRATRLVKSQQ AGKEY+ + +LH ++++ S+ +
Sbjct: 102 TGHSGTLDPKVTGCLTVCIDRATRLVKSQQGAGKEYVCVLRLHDSLQSEKALSRALETLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T + L+ D G+ W+ C+AGT
Sbjct: 162 GALFQR-------------PPLISAVKRQLRIRTIYEIKLLEFDNARHLGVFWVSCEAGT 208
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 209 YIRTLCVHLGLLLGVGGHMQELRRVRSGAMSEADDMVTM 247
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KA +KK MI+ G LDKHG+ NENTPA++ E
Sbjct: 369 KAQEKKKMIQTGELDKHGRKNENTPATWTKE 399
>gi|290986444|ref|XP_002675934.1| predicted protein [Naegleria gruberi]
gi|284089533|gb|EFC43190.1| predicted protein [Naegleria gruberi]
Length = 490
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 145/220 (65%), Gaps = 17/220 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN RT HYTP+P G +P +R ++EY++ G +NLDKP+NPSSHE+VAW+K+IL EK
Sbjct: 40 NFDKLNARTGHYTPIPAGNTPTKRKLEEYLKYGVINLDKPANPSSHEIVAWVKKILDVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC++RATRLVKSQQ AGK+Y+SI KL+ V+ KA ++ +
Sbjct: 100 TGHSGTLDPKVTGCLIVCLNRATRLVKSQQGAGKQYVSILKLNGEVQGGYKAVEEALTTL 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS----NLISSDVTLSTGIIWLKCQAG 176
G A + E + K+ ++S L D + W+KCQAG
Sbjct: 160 TG-------------AVFQMPPEISAVKRQLRIRSIYDVKLFEFDAKSQMAVFWVKCQAG 206
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
TYVRT C H+GL+LG G M ELRR +SG SE+D L T
Sbjct: 207 TYVRTLCEHLGLLLGTGGSMFELRRVQSGSLSEKDFLYTM 246
>gi|323508236|emb|CBQ68107.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Sporisorium reilianum SRZ2]
Length = 497
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VR++H+TP+P G SPL+R +Q YIR+G +NLDKPSNPSSHEVV+W++RILR EK
Sbjct: 40 NYDQLLVRSSHFTPIPHGCSPLKRDLQSYIRSGVINLDKPSNPSSHEVVSWLRRILRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +++ K + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDKLDDAKKLPRAIETLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + W+ C+AGTY+R
Sbjct: 160 GSLFQR---------PPLISAVKRQLRIRTIY-ESKLIEFDNDRHLAVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGALSENDSIVTM 245
>gi|409051461|gb|EKM60937.1| hypothetical protein PHACADRAFT_247173 [Phanerochaete carnosa
HHB-10118-sp]
Length = 502
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 NYDKLLVRSSHFTPIPSGCSPLKRDITSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LHSA+ + + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHSALSESSALPRAIQTLT 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + I W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEKRNLAIFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 213 TLCVHLGLLLGVGGHMQELRRVRSGALSENDEMVTM 248
>gi|71004332|ref|XP_756832.1| hypothetical protein UM00685.1 [Ustilago maydis 521]
gi|46095634|gb|EAK80867.1| hypothetical protein UM00685.1 [Ustilago maydis 521]
Length = 496
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VR++H+TP+P G SPL+R +Q YI++G +NLDKPSNPSSHEVV+W++RILR EK
Sbjct: 40 NYDQLLVRSSHFTPIPHGCSPLKRDLQSYIKSGVINLDKPSNPSSHEVVSWLRRILRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +E+ K + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDKLEDAKKLPRAIETLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + W+ C+AGTY+R
Sbjct: 160 GSLFQR---------PPLISAVKRQLRIRTIY-ESKLIEFDNDRHLAVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGALSENDSIVTM 245
>gi|449550788|gb|EMD41752.1| hypothetical protein CERSUDRAFT_147033 [Ceriporiopsis subvermispora
B]
Length = 525
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R + Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 NYDKLLVRSAHFTPIPSGCSPLKRDLVSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LHS +EN + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHSGLENPTDLPRAIQTLT 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEKRNLSVFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 213 TLCVHLGLLLGVGGHMQELRRVRSGALSENDDMVTM 248
>gi|409083417|gb|EKM83774.1| hypothetical protein AGABI1DRAFT_66714 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 510
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSSHFTPIPSGCSPLKRDITNYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+ + N A + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHAPLPNPAALPRTLQTLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L D + + W+ C+AGT
Sbjct: 161 GALFQR-------------PPLISAVKRQLRIRTIHESKLFEFDEKRNLAVFWVSCEAGT 207
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 208 YIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTM 246
>gi|426201538|gb|EKV51461.1| hypothetical protein AGABI2DRAFT_182425 [Agaricus bisporus var.
bisporus H97]
Length = 510
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSSHFTPIPSGCSPLKRDITNYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+ + N A + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHAPLPNPAALPRTLQTLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L D + + W+ C+AGT
Sbjct: 161 GALFQR-------------PPLISAVKRQLRIRTIHESKLFEFDEKRNLAVFWVSCEAGT 207
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y+RT CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 208 YIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTM 246
>gi|449707537|gb|EMD47184.1| rRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 482
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 141/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+L ++T HYTP G SP+ R I E+ + G +NLDKP+NPSSHEVVAW+KRIL+ EK
Sbjct: 26 NFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINLDKPANPSSHEVVAWLKRILKVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCIDRATRLVKSQQ AGKEY+ I K H A+ + + +K
Sbjct: 86 TGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYVCICKFHEAISD-------EQQVK 138
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ G + P +A ++ + + Y + L+ D + +CQAGTY+R
Sbjct: 139 TVINTLTGALFQLPPV--IAAVKRSLRIRTIY-NTELLEVDKKEGLALFRTQCQAGTYMR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G ++G GA M ELRR RSG +E+D +VT
Sbjct: 196 TLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTL 231
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A +KK ++ +G L+K+GKPN+ TPA YL E+
Sbjct: 354 AQQKKKLVAEGKLEKYGKPNDKTPAEYLKEV 384
>gi|67467818|ref|XP_649989.1| centromere/microtubule binding protein cbf5 [Entamoeba histolytica
HM-1:IMSS]
gi|56466528|gb|EAL44603.1| centromere/microtubule binding protein cbf5, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407042015|gb|EKE41074.1| rRNA pseudouridine synthase [Entamoeba nuttalli P19]
Length = 484
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 141/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+L ++T HYTP G SP+ R I E+ + G +NLDKP+NPSSHEVVAW+KRIL+ EK
Sbjct: 26 NFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINLDKPANPSSHEVVAWLKRILKVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCIDRATRLVKSQQ AGKEY+ I K H A+ + + +K
Sbjct: 86 TGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYVCICKFHEAISD-------EQQVK 138
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ G + P +A ++ + + Y + L+ D + +CQAGTY+R
Sbjct: 139 TVINTLTGALFQLPPV--IAAVKRSLRIRTIY-NTELLEVDKKEGLALFRTQCQAGTYMR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G ++G GA M ELRR RSG +E+D +VT
Sbjct: 196 TLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTL 231
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A +KK ++ +G L+K+GKPN+ TPA YL E+
Sbjct: 354 AQQKKKLVAEGKLEKYGKPNDKTPAEYLKEV 384
>gi|328863728|gb|EGG12827.1| hypothetical protein MELLADRAFT_25274 [Melampsora larici-populina
98AG31]
Length = 398
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 155/230 (67%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL +R++H+TP+P G SPL+R +++YI+ G +NLDKPSNPSSHEVVAWI+RILR +K
Sbjct: 24 NYDKLLIRSSHFTPIPCGSSPLKRPLKDYIKTGVINLDKPSNPSSHEVVAWIRRILRSDK 83
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCL+VCIDRATRLVKSQQ AGKEY+ + +LHS+++ S+ +
Sbjct: 84 TGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKEYVCVLRLHSSLQTEKALSRALETLT 143
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y ++ LI D + W+ C+AGTY+R
Sbjct: 144 GALFQR---------PPLISAVKRQLRIRTIY-ETKLIEFDNKRHLAVFWVSCEAGTYIR 193
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG E DG+VT M + + + WV
Sbjct: 194 TLCVHLGLLLGVGGHMQELRRVRSGAMGENDGIVT-----MHDVLDAQWV 238
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA +KK MIK G LDK+G+ NE TP+ +
Sbjct: 351 KAQEKKKMIKVGELDKYGRANEKTPSKW 378
>gi|402222167|gb|EJU02234.1| centromere/microtubule binding protein cbf5 [Dacryopinax sp.
DJM-731 SS1]
Length = 494
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 153/243 (62%), Gaps = 41/243 (16%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R + YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 42 NYDKLLVRSAHFTPIPSGSSPLKRDLTSYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LHSA+
Sbjct: 102 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHSALS------------- 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTG 167
+E T L L A ++P T +S L+ D + G
Sbjct: 149 ----------SEKTLPRALETLTGALFQRPPLISAVKRQLRVRTIHESRLLEFDNQRNLG 198
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVS 227
+ W+ C+AGTY+RT CVH+GL+LGVG M ELRR RSG SE D +VT M + + +
Sbjct: 199 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMEELRRVRSGALSENDEMVT-----MHDVLDA 253
Query: 228 TWV 230
WV
Sbjct: 254 QWV 256
>gi|46125657|ref|XP_387382.1| hypothetical protein FG07206.1 [Gibberella zeae PH-1]
Length = 486
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++KL RT H+TP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 38 NYEKLLTRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETL 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 158 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E GLVT
Sbjct: 209 TLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTL 244
>gi|408397482|gb|EKJ76624.1| hypothetical protein FPSE_03174 [Fusarium pseudograminearum CS3096]
Length = 485
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++KL RT H+TP+P G SPL+R +++YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 38 NYEKLLTRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETL 157
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 158 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E GLVT
Sbjct: 209 TLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTL 244
>gi|340056620|emb|CCC50954.1| putative centromere/microtubule binding protein cbf5 [Trypanosoma
vivax Y486]
Length = 428
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 144/218 (66%), Gaps = 15/218 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+ KLNVR++H+T + G SPL+R + EY++ G +NLDKPSNPSSHEVV+WIKRIL+CEK
Sbjct: 39 NYHKLNVRSSHFTVMESGWSPLRRPLAEYVKYGMINLDKPSNPSSHEVVSWIKRILKCEK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASKKKMM 118
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK Y+ + +LH V +NV A
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYVGVLRLHDTVSQKNVVAA------ 152
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
L + P P +A ++ + Y + LI D + C+AGTY
Sbjct: 153 -----LQRLTGPCFQRPP-LIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTY 205
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+RT CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 206 IRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHISTM 243
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQANTPSDW 392
>gi|388855280|emb|CCF51174.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Ustilago hordei]
Length = 493
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VR++H+TP+P G SPL+R +Q YI++G +NLDKPSNPSSHEVV+W++RILR EK
Sbjct: 40 NYDQLLVRSSHFTPIPHGCSPLKRDLQSYIKSGVINLDKPSNPSSHEVVSWLRRILRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +E+ K + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHEKLEDPKKLPRAIETLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + W+ C+AGTY+R
Sbjct: 160 GSLFQR---------PPLISAVKRQLRVRTIY-ESKLIEFDNDRHLAVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGALSENDSVVTM 245
>gi|358333510|dbj|GAA34033.2| H/ACA ribonucleoprotein complex subunit 4, partial [Clonorchis
sinensis]
Length = 375
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 140/216 (64%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R I+E+I+ G +NLDKPSNPSSHEVVAW+KR L K
Sbjct: 1 NVHLMNVRECHFEADTTGYSPLHRPIEEHIQTGVINLDKPSNPSSHEVVAWVKRALCVGK 60
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGK Y+ IF+LH A+++ + + +
Sbjct: 61 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKVYVGIFRLHEALDDYKRVHQAVETLS 120
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y ++ L+ D G+I + C+AGTYVR
Sbjct: 121 GALFQR---------PPLVAAVKRQLRVRTVY-ENKLLEYDKEKGLGVIRVTCEAGTYVR 170
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR RSGI +EED +VT
Sbjct: 171 TLCVHIGLLLGCGGVMEELRRIRSGILTEEDNMVTM 206
>gi|443896590|dbj|GAC73934.1| pseudouridine synthase [Pseudozyma antarctica T-34]
Length = 497
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VR++H+TP+P G SPL+R +Q Y+++G +NLDKPSNPSSHEVV+W++RILR EK
Sbjct: 40 NYDQLLVRSSHFTPIPHGCSPLKRDLQSYVKSGVINLDKPSNPSSHEVVSWLRRILRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +E+ K + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDKLEDPKKLPRAIETLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + W+ C+AGTY+R
Sbjct: 160 GSLFQR---------PPLISAVKRQLRIRTIY-ESKLIEFDNDRHLAVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGALSENDSIVTM 245
>gi|167386693|ref|XP_001737869.1| H/ACA ribonucleoprotein complex subunit [Entamoeba dispar SAW760]
gi|165899178|gb|EDR25832.1| H/ACA ribonucleoprotein complex subunit, putative [Entamoeba dispar
SAW760]
Length = 490
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 141/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+L ++T HYTP G SP+ R I E+ + G +NLDKP+NPSSHEVVAW+KRIL+ EK
Sbjct: 26 NFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINLDKPANPSSHEVVAWLKRILKVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCIDRATRLVKSQQ AGKEY+ I K H A+ + + +K
Sbjct: 86 TGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYVCICKFHEAISD-------EQQVK 138
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ G + P +A ++ + + Y + L+ D + +CQAGTY+R
Sbjct: 139 TVINTLTGALFQLPPV--IAAVKRSLRIRTIY-NTELLEVDKKEGFALFRTQCQAGTYMR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G ++G GA M ELRR RSG +E+D +VT
Sbjct: 196 TLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTL 231
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A +KK ++ +G L+K+GKPN+ TPA YL E+
Sbjct: 354 AQQKKKLVAEGKLEKYGKPNDKTPADYLKEV 384
>gi|392597270|gb|EIW86592.1| putative rRNA pseudouridine synthase [Coniophora puteana RWD-64-598
SS2]
Length = 526
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+ G SPL+R +Q Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 42 NYDKLLVRSSHFTPISSGNSPLRRDLQSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LHS++ + + +
Sbjct: 102 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHSSLPDPTALPRSLQTLS 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTY+R
Sbjct: 162 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEKRNLAVFWVSCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 212 TLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTM 247
>gi|19115790|ref|NP_594878.1| pseudouridylate synthase Cbf5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|3913202|sp|O14007.1|CBF5_SCHPO RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Centromere-binding factor 5 homolog
gi|2239214|emb|CAB10131.1| pseudouridylate synthase Cbf5 (predicted) [Schizosaccharomyces
pombe]
Length = 474
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 151/230 (65%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VRT HYTP+P G +PL+R I EY+ +G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 33 NFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+C DRATRLVKSQQSAGKEY+ + +LH +VE + +
Sbjct: 93 TGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNVASAIETLT 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + + W C+AGTY+R
Sbjct: 153 GALFQR---------PPLISAVKRQLRIRSIY-ESKLIEFDNERNLAVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG SE D +VT M + + + W+
Sbjct: 203 TLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVT-----MHDVLDAQWI 247
>gi|384490232|gb|EIE81454.1| H/ACA ribonucleoprotein complex subunit 4 [Rhizopus delemar RA
99-880]
Length = 479
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 143/212 (67%), Gaps = 16/212 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+P G SPL+R + EY+R G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 27 NYDQLNVRTGHYTPIPSGSSPLKRPLDEYVRYGVINLDKPANPSSHEVVAWIKRILRVEK 86
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ I +LH A+E+ K S+ +
Sbjct: 87 TGHSGTLDPKVTGGLIVCVDRATRLVKSQQGAGKEYVCILRLHDAIESEKKLSQAIETLT 146
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L +A ++ T +S L+ D + W C+AGT
Sbjct: 147 GALFQR-------------PPLISAVKRQLRVRTIHESKLLEFDNDRHLAVFWASCEAGT 193
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
Y+RT CVH+GL+LGVG M ELRR RSG SE
Sbjct: 194 YMRTLCVHLGLLLGVGGHMQELRRVRSGTTSE 225
>gi|302695777|ref|XP_003037567.1| hypothetical protein SCHCODRAFT_255708 [Schizophyllum commune H4-8]
gi|300111264|gb|EFJ02665.1| hypothetical protein SCHCODRAFT_255708 [Schizophyllum commune H4-8]
Length = 513
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR++H+TP+P G SPL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 40 NYDKLLVRSSHFTPIPAGCSPLKRDITTYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 99
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+++ + A + +
Sbjct: 100 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHNSLPDPAALPRALQTLT 159
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L D + + W+ C+AGTY+R
Sbjct: 160 GALFQR---------PPLISAVKRQLRIRTIY-ESKLFEFDEKRNLAVFWVSCEAGTYIR 209
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 210 TLCVHLGLLLGVGGHMQELRRVRSGAMSENDEIVTM 245
>gi|400600982|gb|EJP68650.1| centromere/microtubule-binding protein cbf5 [Beauveria bassiana
ARSEF 2860]
Length = 826
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R I+ YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 379 NYDKLLVRTGHFTPIPNGCSPLKRDIKSYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 438
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 439 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVVRLHDKLPGGQAQFARALETL 498
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 499 TGALFQ--RPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 549
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E LVT
Sbjct: 550 TLCVHLGLLLGVGGHMQELRRVRSGAMDESKQLVTL 585
>gi|118357710|ref|XP_001012103.1| rRNA pseudouridine synthase, putative family protein [Tetrahymena
thermophila]
gi|89293870|gb|EAR91858.1| rRNA pseudouridine synthase, putative family protein [Tetrahymena
thermophila SB210]
Length = 424
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 149/220 (67%), Gaps = 14/220 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKR----IL 56
N+DK+N+R++HYTP+P G +PL R ++E+++ G +NLDKPSNPSSHEVVAW+K+ I
Sbjct: 48 NYDKMNIRSSHYTPIPNGSNPLARPMEEHLKYGVMNLDKPSNPSSHEVVAWVKKLFENIT 107
Query: 57 RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKK 116
+ EKTGHSGTLDPK +GCLIVC++RATRLVK+QQSAGKEY+ I +LH+ +E+ K +K
Sbjct: 108 KMEKTGHSGTLDPKVTGCLIVCLNRATRLVKAQQSAGKEYVGIVRLHNDIESELKLAKAL 167
Query: 117 MMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAG 176
+ L K P + E + T +S LI + GIIW+ C+AG
Sbjct: 168 QQLTGPLFQK-------PPLISAVKREL---RVRTIYESKLIEYNPEKKMGIIWMSCEAG 217
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
TYVRT CVH+GL+LG G M ELRR RSGI E LVT
Sbjct: 218 TYVRTLCVHLGLLLGTGGHMEELRRVRSGILDENQYLVTM 257
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A +KK +IK+GLLDKHGKPN+ TP +
Sbjct: 379 RALRKKNLIKEGLLDKHGKPNDQTPNDW 406
>gi|346319924|gb|EGX89525.1| centromere/microtubule binding protein CBF5 [Cordyceps militaris
CM01]
Length = 486
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 143/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILRCEK
Sbjct: 37 NYDKLLVRTGHFTPIPNGCSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWVKRILRCEK 96
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+++ +LH + + +
Sbjct: 97 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVVRLHDKLPGGQAQFARALETM 156
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S LI D G+ W+ C+AGTY+R
Sbjct: 157 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLIEFDNDRHLGVFWVSCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E LVT
Sbjct: 208 TLCVHLGLLLGVGGHMQELRRVRSGAMHEGKQLVTL 243
>gi|71420515|ref|XP_811513.1| centromere/microtubule binding protein cbf5 [Trypanosoma cruzi
strain CL Brener]
gi|70876184|gb|EAN89662.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 148/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D++NVR++++T L G SPL+R ++EY++ G +NLDKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH V S+KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTV------SEKKVL-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + L+ D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRVRNIY-SNQLVEYDKHRHLVVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTM 243
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQGNTPSDW 392
>gi|407837272|gb|EKF99701.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 148/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D++NVR++++T L G SPL+R ++EY++ G +NLDKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH V S+KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTV------SEKKVL-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + L+ D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRVRNIY-SNQLVEYDKHRHLVVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTM 243
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQVNTPSDW 392
>gi|71412047|ref|XP_808226.1| centromere/microtubule binding protein cbf5 [Trypanosoma cruzi
strain CL Brener]
gi|70872389|gb|EAN86375.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 148/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D++NVR++++T L G SPL+R ++EY++ G +NLDKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH V S+KK++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTV------SEKKVL-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + L+ D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRVRNIY-SNQLVEYDKHRHLVVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ SE+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTM 243
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK++M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRLMMKDGLLDKYGRPQGNTPSDW 392
>gi|302830414|ref|XP_002946773.1| hypothetical protein VOLCADRAFT_79364 [Volvox carteri f.
nagariensis]
gi|300267817|gb|EFJ51999.1| hypothetical protein VOLCADRAFT_79364 [Volvox carteri f.
nagariensis]
Length = 517
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 142/209 (67%), Gaps = 9/209 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++DKLNVRT HYTP+P G +PL+R+++EYI G +NLDKPSNPSSHEVVAW+KR+LR EK
Sbjct: 63 HYDKLNVRTGHYTPIPAGSTPLKRSLKEYISYGCINLDKPSNPSSHEVVAWVKRMLRVEK 122
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRL KSQQ+AGKEY+ I + HS VE A K +
Sbjct: 123 TGHSGTLDPKVTGNLIVCIDRATRLAKSQQAAGKEYVCIVRFHSKVEGGTGAVAKALETL 182
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T K+ L D G+ W+ C+AGTYVR
Sbjct: 183 TGALFQ--RPPLISAVKRQLRIR-------TIYKAKLYEYDEERHMGVFWISCEAGTYVR 233
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
T CVH+GL+LGVG M ELRR RSGI E
Sbjct: 234 TMCVHLGLLLGVGGHMQELRRVRSGIMGE 262
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A KK +I +G LDKHG+PNENTP YL L
Sbjct: 394 AQLKKKLIAEGKLDKHGRPNENTPKEYLRSL 424
>gi|398015080|ref|XP_003860730.1| centromere/microtubule binding protein cbf5, putative [Leishmania
donovani]
gi|322498952|emb|CBZ34025.1| centromere/microtubule binding protein cbf5, putative [Leishmania
donovani]
Length = 430
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 142/216 (65%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+NVR+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+C DRATRLVKSQQ+AGK YI + +LH V S+KK+
Sbjct: 99 TGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGVLRLHDTV------SQKKV--- 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 150 NAALQRLTGPCFQRP-PLIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR R+G+ +E D L T
Sbjct: 208 TLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTM 243
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQSNTPPDWF 393
>gi|146086157|ref|XP_001465473.1| putative centromere/microtubule binding protein cbf5 [Leishmania
infantum JPCM5]
gi|134069571|emb|CAM67894.1| putative centromere/microtubule binding protein cbf5 [Leishmania
infantum JPCM5]
Length = 430
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 142/216 (65%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+NVR+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+C DRATRLVKSQQ+AGK YI + +LH V S+KK+
Sbjct: 99 TGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGVLRLHDTV------SQKKV--- 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 150 NAALQRLTGPCFQRP-PLIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR R+G+ +E D L T
Sbjct: 208 TLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTM 243
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQSNTPPDWF 393
>gi|157869178|ref|XP_001683141.1| putative centromere/microtubule binding protein cbf5 [Leishmania
major strain Friedlin]
gi|68224024|emb|CAJ05101.1| putative centromere/microtubule binding protein cbf5 [Leishmania
major strain Friedlin]
Length = 430
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 142/216 (65%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+NVR+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+C DRATRLVKSQQ+AGK YI + +LH V S+KK+
Sbjct: 99 TGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGVLRLHDTV------SQKKV--- 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 150 DAALQRLTGPCFQRP-PLIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR R+G+ +E D L T
Sbjct: 208 TLCVHVGLILGAGGHMEELRRIRTGVITENDHLSTM 243
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQSNTPSDWF 393
>gi|401421911|ref|XP_003875444.1| centromere/microtubule binding protein cbf5,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322491681|emb|CBZ26954.1| centromere/microtubule binding protein cbf5,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 430
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 142/216 (65%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+NVR+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+C DRATRLVKSQQ+AGK Y+ + +LH V S+KK+
Sbjct: 99 TGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYVGVLRLHDTV------SQKKV--- 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 150 DAALQRLTGPCFQRP-PLIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR R+G+ +E D L T
Sbjct: 208 TLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTM 243
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQSNTPSDWF 393
>gi|452982351|gb|EME82110.1| hypothetical protein MYCFIDRAFT_215584 [Pseudocercospora fijiensis
CIRAD86]
Length = 509
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 35 NWDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWLKRILRVEK 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCVLRLHD------KLPGGQAQLA 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 149 RALETLTGALFQRPPLISAVKRQL---RIRTIHESKLLEFDNDRQLAVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E+DG+VT
Sbjct: 206 TLCVHLGLLLGVGGHMQELRRVRSGAMDEQDGMVTL 241
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
A++KK M + G LDK G+PNE TPAS+ E
Sbjct: 364 ATEKKKMKESGKLDKFGRPNEATPASWKQE 393
>gi|145491600|ref|XP_001431799.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398905|emb|CAK64401.1| unnamed protein product [Paramecium tetraurelia]
Length = 448
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 156/239 (65%), Gaps = 23/239 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++K+N+ T+HYTP+P G +PL+R + E+++ G +NLDKPSNPSSHEVV+WIKRIL+ +K
Sbjct: 44 NYEKMNILTSHYTPIPSGSTPLKRPLIEHLKYGVINLDKPSNPSSHEVVSWIKRILKVDK 103
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC++RATRLVK+QQSAGKEY+ I +LH A+ + AK ++
Sbjct: 104 TGHSGTLDPKVTGALIVCLNRATRLVKAQQSAGKEYVGIIRLHDAISSAAK-------LE 156
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + D G + PA + E + T +S L D GI W+ C+AGTYVR
Sbjct: 157 KAIQDLTGAVFQKPPAISAVKREL---RVRTIYESKLFEYDPEKRLGIFWMSCEAGTYVR 213
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIV 226
T CVH+GL+LGVG M ELRR RSGI E +V+ F+ E H++
Sbjct: 214 TLCVHLGLLLGVGGHMEELRRVRSGILDENKYMVSMHDVLDAQYRYEKFKDESYLRHVI 272
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A +KK +IK+GLLD HGKPN NTP +
Sbjct: 372 RALRKKALIKEGLLDPHGKPNANTPQDW 399
>gi|154337350|ref|XP_001564908.1| putative centromere/microtubule binding protein cbf5 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061946|emb|CAM38987.1| putative centromere/microtubule binding protein cbf5 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 430
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 142/216 (65%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DK+N+R+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDKMNIRSTHFTLLECGWSPLRRPLSEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+C DRATRLVKSQQ+AGK YI + +LH V S+K++
Sbjct: 99 TGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGVLRLHDTV------SQKRV--- 149
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + LI D + C+AGTY+R
Sbjct: 150 DAALQRLTGPCFQRPP-LIAAVKRQLRIRNIY-SNQLIEYDKHRHLAVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G M ELRR R+G+ +E D L T
Sbjct: 208 TLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTM 243
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQSNTPSDWF 393
>gi|145342497|ref|XP_001416218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576443|gb|ABO94511.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 411
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 151/230 (65%), Gaps = 14/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT HYTP+P G SPL+R + EY+R G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 30 NYDKLMVRTGHYTPIPCGSSPLRRPLAEYLRYGVINLDKPANPSSHEVVAWLKRILRVEK 89
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSA + K ++
Sbjct: 90 TGHSGTLDPKVTGSLIVCIDRATRLVKSQQGAGKEYVCVCRLHSA------PTGGKSAVE 143
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+G+ G + P + + + T S L D + + W+ C+AGTYVR
Sbjct: 144 RGIETLTGALFQRPPLISAVKRQL---RIRTIYDSKLHEFDEARNLVVFWVSCEAGTYVR 200
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI SE L T M + + + WV
Sbjct: 201 TLCVHLGLLLGVGGHMQELRRVRSGICSESKNLAT-----MHDVLDAMWV 245
>gi|345560107|gb|EGX43235.1| hypothetical protein AOL_s00215g609 [Arthrobotrys oligospora ATCC
24927]
Length = 477
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 145/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G PL+R ++ Y+ +G +NLDKPSNPSSHEVVAWIKRIL+ +K
Sbjct: 34 NYDKLRVRTGHFTPIPVGCPPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWIKRILKIDK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+ + +LH V + A ++ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCLDRATRLVKSQQGAGKEYVCVLRLHDKVTSEATVARALETLT 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + W+ C+AGTY+R
Sbjct: 154 GALFQR---------PPLISAVKRQLRVRTIY-ESKLLEFDNDRHLAVFWVSCEAGTYIR 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 204 TLCVHLGLLLGVGGHMQELRRVRSGALSENDNIVTL 239
>gi|145488199|ref|XP_001430104.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145507894|ref|XP_001439899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397199|emb|CAK62706.1| unnamed protein product [Paramecium tetraurelia]
gi|124407100|emb|CAK72502.1| unnamed protein product [Paramecium tetraurelia]
Length = 447
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 23/239 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N++++N+ T+HYTP+P G +PL+R + E+++ G +NLDKPSNPSSHEVV+WIKRIL+ +K
Sbjct: 44 NYERMNILTSHYTPIPSGSTPLKRPLIEHLKYGVINLDKPSNPSSHEVVSWIKRILKVDK 103
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC++RATRLVK+QQSAGKEY+ I +LH A+ + AK ++
Sbjct: 104 TGHSGTLDPKVTGALIVCLNRATRLVKAQQSAGKEYVGIIRLHDAISSAAK-------LE 156
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + D G + PA + E + T +S L D GI W+ C+AGTYVR
Sbjct: 157 KAIQDLTGAVFQKPPAISAVKREL---RVRTIYESKLFEYDPEKRLGIFWMSCEAGTYVR 213
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIV 226
T CVH+GL+LGVG M ELRR RSGI E +V+ F+ E H++
Sbjct: 214 TLCVHLGLLLGVGGHMEELRRVRSGILDENKYMVSMHDVLDAQYRYEKFKDESYLRHVI 272
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+A +KK +IK+GLLD HGKPN NTP +
Sbjct: 371 RALRKKALIKEGLLDPHGKPNANTPQDW 398
>gi|395334191|gb|EJF66567.1| putative rRNA pseudouridine synthase [Dichomitus squalens LYAD-421
SS1]
Length = 518
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+ P+ G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 43 NYDKLLVRSAHFVPIIAGCSPLKRDITSYVKSGVINLDKPSNPSSHEVVAWLRRILRVEK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ ++HSA+ N + +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRIHSALPNPTALPRAIQTLT 162
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S L+ D + + W+ C+AGTY+R
Sbjct: 163 GALFQR---------PPLISAVKRQLRIRTIY-ESKLLEFDEKRNLAVFWVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG SE D +VT M + + + WV
Sbjct: 213 TLCVHLGLLLGVGGHMQELRRVRSGALSENDDMVT-----MHDVLDAQWV 257
>gi|407406560|gb|EKF30839.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi marinkellei]
Length = 428
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 148/216 (68%), Gaps = 11/216 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D++NVR++++T L G SPL+R ++EY++ G +NLDKPSNPSSHEVV+WIKRIL+C+K
Sbjct: 39 NYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNPSSHEVVSWIKRILKCDK 98
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDPK +G LI+CIDRATRLVKSQQ+AGK YI + +LH AS+K+++
Sbjct: 99 TGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDT------ASEKRVL-- 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + P P +A ++ + Y + L+ D + C+AGTY+R
Sbjct: 151 -AALQRLTGPCFQRPP-LIAAVKRQLRVRNIY-SNQLVEYDKHRHLVVFETHCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR R+G+ +E+D + T
Sbjct: 208 TLCVHLGLILGVGGHMEELRRIRTGVITEDDHVSTM 243
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY 138
A KK+ M+K GLLDK+G+P NTP+ +
Sbjct: 366 AVKKRSMMKDGLLDKYGRPQGNTPSDW 392
>gi|303281684|ref|XP_003060134.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458789|gb|EEH56086.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 496
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/230 (51%), Positives = 151/230 (65%), Gaps = 14/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
++DKL VRT HYTP+P G SPL+R +QEYIR G +NLDKP+NPSSHEVVAW+KR+LR EK
Sbjct: 75 DYDKLMVRTGHYTPIPCGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWLKRMLRVEK 134
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVK+QQ AGKEY+ + +LHS E +A + +
Sbjct: 135 TGHSGTLDPKVTGGLIVCIDRATRLVKAQQGAGKEYVCVARLHSKPEGGKQAVLRAIETL 194
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + +P + + T +S + D + + W+ C+AGTYVR
Sbjct: 195 TGALFQ--RPPLISAVKRQLRIR-------TIYESKMCEYDEERNLVVFWISCEAGTYVR 245
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSGI E D L T M + + + WV
Sbjct: 246 TMCVHLGLLLGVGGHMQELRRVRSGILGENDNLCT-----MHDVMDAMWV 290
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAA 145
A+ KK +I +G LDK GKPNE TP+ YL + A
Sbjct: 404 ATAKKKLIAEGKLDKFGKPNEKTPSEYLRSVPDA 437
>gi|393244621|gb|EJD52133.1| putative rRNA pseudouridine synthase [Auricularia delicata
TFB-10046 SS5]
Length = 514
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 146/216 (67%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R I Y+++G +NLDKPSNPSSHEVVAW++RILR +K
Sbjct: 43 NYDKLLVRTAHFTPIPMGCSPLKRDITSYVKSGVINLDKPSNPSSHEVVAWLRRILRVDK 102
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH+A+ + M +
Sbjct: 103 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHAALPD-------PMALP 155
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + G + P + + + T S LI D + + + C+AGTY+R
Sbjct: 156 RAMETLTGALFQRPPLISAVKRQL---RVRTIYSSTLIEFDNDRNLAVFHVSCEAGTYIR 212
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG SE D +VT
Sbjct: 213 TLCVHLGLLLGVGGHMQELRRVRSGALSESDEMVTM 248
>gi|226478530|emb|CAX72760.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 143/219 (65%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + + G+I ++C+AGT
Sbjct: 166 GALFQR-------------PPLVAAVKRQLRVRTIYESKLLEYDKSRNLGLITVRCEAGT 212
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+R+G SE D LVT
Sbjct: 213 YVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVTM 251
>gi|56759202|gb|AAW27741.1| SJCHGC01561 protein [Schistosoma japonicum]
Length = 459
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 143/219 (65%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + + G+I ++C+AGT
Sbjct: 166 GALFQR-------------PPLVAAVKRQLRVRTIYESKLLEYDKSRNLGLITVRCEAGT 212
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+R+G SE D LVT
Sbjct: 213 YVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVTM 251
>gi|226478554|emb|CAX72772.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
gi|257205750|emb|CAX82526.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 143/219 (65%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + + G+I ++C+AGT
Sbjct: 166 GALFQR-------------PPLVAAVKRQLRVRTIYESKLLEYDKSRNLGLITVRCEAGT 212
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+R+G SE D LVT
Sbjct: 213 YVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVTM 251
>gi|226478088|emb|CAX72737.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 143/219 (65%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + + G+I ++C+AGT
Sbjct: 166 GALFQR-------------PPLVAAVKRQLRVRTIYESKLLEYDKSRNLGLITVRCEAGT 212
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+R+G SE D LVT
Sbjct: 213 YVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVTM 251
>gi|308800054|ref|XP_003074808.1| Cbf5 H/ACA ribonucleoprotein complex subunit, nucleolar pseudour
(IC) [Ostreococcus tauri]
gi|119358799|emb|CAL52066.2| Cbf5 H/ACA ribonucleoprotein complex subunit, nucleolar pseudour
(IC), partial [Ostreococcus tauri]
Length = 403
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 147/216 (68%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT HYTP+P G SP+ R + EY+R G +NLDKP+NPSSHEVVAW+KRILR EK
Sbjct: 25 NYDKLMVRTGHYTPIPCGSSPITRPLAEYLRYGVINLDKPANPSSHEVVAWLKRILRVEK 84
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LH A + K ++
Sbjct: 85 TGHSGTLDPKVTGSLIVCIDRATRLVKSQQGAGKEYVCVCRLH------ATPAGGKGAVE 138
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+G+ G + P ++ ++ + Y KS L+ D + + W+ C+AGTY+R
Sbjct: 139 RGIETLTGALFQRPP--LISAVKRQLRIRAIY-KSKLLEFDEARNLVVFWVSCEAGTYIR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI SE L T
Sbjct: 196 TLCVHLGLLLGVGGHMQELRRVRSGICSEAKNLSTM 231
>gi|218192913|gb|EEC75340.1| hypothetical protein OsI_11751 [Oryza sativa Indica Group]
Length = 535
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/195 (52%), Positives = 129/195 (66%), Gaps = 10/195 (5%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
L R I EY+R G +NLDKPSNPSSHEVVAWIKR+LR EKTGHSGTLDPK +G LIVC+DR
Sbjct: 80 LNRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDR 139
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ATRLVKSQQ AGKEY+ + + H+AV + A+ ++ + + + P + L
Sbjct: 140 ATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQR--PPLISAVKRQL-- 195
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+ T +S L+ D + W+ C+AGTYVRT CVH+GL+LGVGA M ELRR
Sbjct: 196 ------RVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRR 249
Query: 202 NRSGIQSEEDGLVTF 216
RSGI E D +VT
Sbjct: 250 VRSGILGETDNMVTM 264
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK M+ +GLLDKHGKPNE TP+ +L
Sbjct: 387 ALKKKKMVAEGLLDKHGKPNEKTPSEWL 414
>gi|440300243|gb|ELP92732.1| H/ACA ribonucleoprotein complex subunit, putative [Entamoeba
invadens IP1]
Length = 473
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 142/216 (65%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L +R+ YTP G SP R ++E+++ G +NLDKP+NPSSHEVVAW+KRIL+ EK
Sbjct: 26 NYDQLEIRSGQYTPASAGNSPTNRPLKEHLKYGIINLDKPANPSSHEVVAWLKRILKVEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP +GCLIVCI+RATRLVKSQQ AGKEY+ + K HS +E+ +KKM +
Sbjct: 86 TGHSGTLDPAVTGCLIVCIERATRLVKSQQDAGKEYVCVCKFHSPIED-----EKKMEMT 140
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L G + P +A ++ + Y K+ ++ D + +CQAGTY+R
Sbjct: 141 IKTLT--GALFQLPPV--IAAVKRTLRIRTIY-KTEVLEMDKEQGLALFRTECQAGTYMR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G + G GA M ELRR RSG E+D +VT
Sbjct: 196 TLCVHLGYLSGTGAHMEELRRVRSGNLCEKDDMVTL 231
>gi|255082488|ref|XP_002504230.1| predicted protein [Micromonas sp. RCC299]
gi|226519498|gb|ACO65488.1| predicted protein [Micromonas sp. RCC299]
Length = 477
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 148/225 (65%), Gaps = 14/225 (6%)
Query: 6 NVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSG 65
VRT HYTP+P G SPL+R +QEYIR G +NLDKP+NPSSHEVVAW+KR+LR EKTGHSG
Sbjct: 68 QVRTGHYTPIPCGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWLKRMLRVEKTGHSG 127
Query: 66 TLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLD 125
TLDPK +G LIVCIDRATRLVK+QQ AGKEY+ I +LH A E A ++ + G L
Sbjct: 128 TLDPKVTGGLIVCIDRATRLVKAQQGAGKEYVCICRLHGAPEGGKTAVQRAIETLTGALF 187
Query: 126 KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
+ +P + + T +S + D + + W+ C+AGTYVRT CVH
Sbjct: 188 Q--RPPLISAVKRQLRIR-------TIYESKMYEYDEERNLVVFWISCEAGTYVRTMCVH 238
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+GL+LGVG M ELRR RSGI E+D LVT M + + + WV
Sbjct: 239 LGLLLGVGGHMQELRRVRSGILGEKDNLVT-----MHDVMDAMWV 278
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
A KK +I +G LDK GKPN+ TPA YL + A K
Sbjct: 392 AQAKKKLIAEGKLDKFGKPNDKTPAEYLRAVPDANGAK 429
>gi|398393878|ref|XP_003850398.1| hypothetical protein MYCGRDRAFT_74715 [Zymoseptoria tritici IPO323]
gi|339470276|gb|EGP85374.1| hypothetical protein MYCGRDRAFT_74715 [Zymoseptoria tritici IPO323]
Length = 486
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR E+
Sbjct: 37 NWDQLLVRTGHFTPIPAGCTPLRRDLKSYISSGVINLDKPSNPSSHEVVAWLKRILRVER 96
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 97 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHD------KLPGGEAQLA 150
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 151 RALETLTGALFQRPPLISAVKRQL---RIRTIHESKLLQFDNDRQLAVFWVSCEAGTYIR 207
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E++G+VT
Sbjct: 208 TLCVHLGLLLGVGGHMQELRRVRSGAMDEKEGMVTL 243
>gi|164656497|ref|XP_001729376.1| hypothetical protein MGL_3411 [Malassezia globosa CBS 7966]
gi|159103267|gb|EDP42162.1| hypothetical protein MGL_3411 [Malassezia globosa CBS 7966]
Length = 509
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 145/210 (69%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR++H+TP+P G +PL+R I Y+ +G +NLDKPSNPSSHEVVAW++RILR EKTGHSGT
Sbjct: 35 VRSSHFTPIPHGCTPLKRDILTYVSSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGT 94
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH +++V+K + + L +
Sbjct: 95 LDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHDKLDDVSKLPRVLETLTGALFQR 154
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++ ++ + Y +S L+ D + W+ C+AGTY+RT CVH+
Sbjct: 155 ---------PPLISAVKRQLRIRTIY-ESKLLEFDNDRHLAVFWVSCEAGTYIRTLCVHL 204
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GL+LGVG M ELRR RSG SE+D +VT
Sbjct: 205 GLLLGVGGHMQELRRVRSGALSEDDNMVTM 234
>gi|159490678|ref|XP_001703300.1| centromere/microtubule binding protein [Chlamydomonas reinhardtii]
gi|158280224|gb|EDP05982.1| centromere/microtubule binding protein [Chlamydomonas reinhardtii]
Length = 435
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 141/209 (67%), Gaps = 9/209 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRT HYTP+P G +PL+R ++EY+ G +NLDKP+NPSSHEVVAW+KR+LR EK
Sbjct: 34 NYDKLNVRTGHYTPIPAGSTPLKRPLKEYLSYGCINLDKPANPSSHEVVAWVKRMLRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVK+QQ+AGKEY+ I + H VE A K +
Sbjct: 94 TGHSGTLDPKVTGNLIVCIDRATRLVKAQQAAGKEYVCIARFHGKVEGGTAAVNKALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L + ++ ++ + Y ++ L D + W+ C+AGTYVR
Sbjct: 154 TGALFQR--------PPLISAVKRQLRVRTIY-QAKLYEYDEERHLAVFWISCEAGTYVR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
T CVH+GL+LGVG M ELRR RSGI E
Sbjct: 205 TLCVHLGLLLGVGGHMQELRRVRSGIMGE 233
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
A KK +I +G LDKHG+PNENTP YL L
Sbjct: 365 AQIKKKLITEGKLDKHGRPNENTPKEYLRSL 395
>gi|449301354|gb|EMC97365.1| hypothetical protein BAUCODRAFT_121823 [Baudoinia compniacensis
UAMH 10762]
Length = 502
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G +PL+R I+ YI +G +NLDKPSNPSSHEVVAW+KRILR ++
Sbjct: 35 NWDQLLVRTGHFTPIPAGCTPLRRDIKSYISSGVINLDKPSNPSSHEVVAWLKRILRVDR 94
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 95 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHD------KLPGGEAQLS 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L D + W+ C+AGTY+R
Sbjct: 149 RALETLTGALFQRPPLISAVKRQL---RIRTIHESKLFEFDNDRHLAVFWVSCEAGTYIR 205
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E++G+VT
Sbjct: 206 TLCVHLGLLLGVGGHMQELRRVRSGAMDEQEGMVTL 241
>gi|346974692|gb|EGY18144.1| centromere/microtubule-binding protein cbf5 [Verticillium dahliae
VdLs.17]
Length = 484
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 134/212 (63%), Gaps = 15/212 (7%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
L VRT H+TP+P G SPL+R I+ YI +G +NLDKPSNPSSHEVVAW+KR+LR EKTGHS
Sbjct: 51 LLVRTGHFTPIPAGCSPLKRDIKSYISSGVINLDKPSNPSSHEVVAWLKRMLRVEKTGHS 110
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDPK +GCLIV LVKSQQ AGKEY+ + +LH K ++ + L
Sbjct: 111 GTLDPKVTGCLIVW------LVKSQQGAGKEYVCVIRLHD------KLPGGQVQFARALE 158
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
G + P + + + T +S +I D G+ W+ C+AGTY+RT CV
Sbjct: 159 TLTGALFQRPPLISAVKRQL---RIRTIHESKVIEFDNDRHLGVFWVSCEAGTYIRTLCV 215
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
H+GL+LGVGA M ELRR RSG E GLVT
Sbjct: 216 HLGLLLGVGAHMQELRRVRSGAMDENKGLVTL 247
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
+AS+KK M G LDK+G+PNE TPA +++E
Sbjct: 369 QASEKKKMKADGKLDKYGRPNEATPAKWVSE 399
>gi|453084115|gb|EMF12160.1| putative rRNA pseudouridine synthase [Mycosphaerella populorum
SO2202]
Length = 499
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 146/217 (67%), Gaps = 10/217 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L +RT H+TP+P G +PL+R ++ Y+ +G +NLDKPSNPSSHEVVAW+KRILR ++
Sbjct: 38 NWDQLLIRTGHFTPIPAGCTPLKRDLKSYVSSGVINLDKPSNPSSHEVVAWLKRILRVDR 97
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LH K + +
Sbjct: 98 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHD------KLPGGRAQLA 151
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S LI D + W+ C+AGTY+R
Sbjct: 152 RALETLTGALFQRPPLISAVKRQL---RIRTIHESKLIEFDNDRQLAVFWVSCEAGTYIR 208
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG-LVTF 216
T CVH+GL+LGVG M ELRR RSG E+DG +VT
Sbjct: 209 TLCVHLGLLLGVGGHMQELRRVRSGAMKEDDGNMVTL 245
>gi|429859279|gb|ELA34067.1| centromere microtubule binding protein cbf5 [Colletotrichum
gloeosporioides Nara gc5]
Length = 471
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/212 (51%), Positives = 139/212 (65%), Gaps = 9/212 (4%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
L VRT H+TP+P G SPL+R I+ YI +G +NLDKPSNPSSHEVVAW+KR+LR EKTGHS
Sbjct: 53 LLVRTGHFTPIPAGCSPLKRDIKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEKTGHS 112
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDPK +GCLIVC+DRATRLVKSQQ AGKEY+++ +LH + + + G L
Sbjct: 113 GTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETLTGAL 172
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+P + + T ++ LI D G+ W+ C+AGTY+RT CV
Sbjct: 173 --FQRPPLISAVKRQLRIR-------TIYETKLIEFDNDRHLGVFWVSCEAGTYIRTLCV 223
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
H+GL+LGVG M ELRR RSG E G+VT
Sbjct: 224 HLGLLLGVGGHMQELRRVRSGAMDESQGMVTL 255
>gi|257206120|emb|CAX82711.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 143/219 (65%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLT 165
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T +S L+ D + + G+I ++C+AGT
Sbjct: 166 GALFQR-------------PPLVAAVKRQLTVRTIYESKLLEYDKSRNLGLITVRCEAGT 212
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M EL+R+R+ SE+D LVT
Sbjct: 213 YVRTLCVHLGLLLGCGGVMEELQRSRTVFMSEKDNLVTM 251
>gi|111227952|gb|ABH08965.1| MFL-alpha [Drosophila melanogaster]
gi|112382764|gb|ABI17548.1| MFLalpha protein [Drosophila melanogaster]
Length = 253
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 17/214 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + ++ C T
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMDLLIRSCNIWTITL 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLV 214
+ + L ++IE RN ++S D L+
Sbjct: 226 IKEISSKIFL----KIIECHRN---LKSSHDTLL 252
>gi|386768562|ref|NP_001246490.1| nucleolar protein at 60B, isoform G [Drosophila melanogaster]
gi|383302677|gb|AFH08243.1| nucleolar protein at 60B, isoform G [Drosophila melanogaster]
Length = 227
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 107/123 (86%), Gaps = 7/123 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGL 123
QGL
Sbjct: 169 QGL 171
>gi|452841091|gb|EME43028.1| hypothetical protein DOTSEDRAFT_72429 [Dothistroma septosporum
NZE10]
Length = 499
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L VRT H+TP+P G +PL+R ++ Y+ +G +NLDKPSNPSSHEVVAW+KRILR ++
Sbjct: 31 NWDQLQVRTGHFTPIPAGCTPLRRDLKSYVSSGVINLDKPSNPSSHEVVAWLKRILRVDR 90
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH K + +
Sbjct: 91 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVLRLHE------KLPGGEAQLA 144
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 145 RALETLTGALFQRPPLISAVKRQL---RVRTIYESKLLEFDNDRQLAVFWVSCEAGTYIR 201
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSG E++ +VT
Sbjct: 202 TLCVHLGLLLGVGGHMQELRRVRSGAMKEDETMVTL 237
>gi|256083755|ref|XP_002578104.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 414
Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 141/219 (64%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 42 NVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V+ + K K +
Sbjct: 102 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHESVDEIKKIQKAVEGLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T + L+ + + + G+I ++C+AGT
Sbjct: 162 GALFQR-------------PPLVAAVKRQLRVRTIYECKLLEYEKSKNLGLIMVRCEAGT 208
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+++G SE D LVT
Sbjct: 209 YVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTM 247
>gi|256083757|ref|XP_002578105.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 399
Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 141/219 (64%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 42 NVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V+ + K K +
Sbjct: 102 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHESVDEIKKIQKAVEGLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T + L+ + + + G+I ++C+AGT
Sbjct: 162 GALFQR-------------PPLVAAVKRQLRVRTIYECKLLEYEKSKNLGLIMVRCEAGT 208
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+++G SE D LVT
Sbjct: 209 YVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTM 247
>gi|256083759|ref|XP_002578106.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 327
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 141/219 (64%), Gaps = 16/219 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 42 NVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V+ + K K +
Sbjct: 102 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHESVDEIKKIQKAVEGLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGT 177
L + L AA ++ T + L+ + + + G+I ++C+AGT
Sbjct: 162 GALFQR-------------PPLVAAVKRQLRVRTIYECKLLEYEKSKNLGLIMVRCEAGT 208
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
YVRT CVH+GL+LG G M ELRR+++G SE D LVT
Sbjct: 209 YVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTM 247
>gi|403414199|emb|CCM00899.1| predicted protein [Fibroporia radiculosa]
Length = 498
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 138/230 (60%), Gaps = 33/230 (14%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ H+TP+P G SPL+R I YI++G +NLDKPSNPSSHEVVAW++RILR EK
Sbjct: 41 NYDKLLVRSAHFTPIPSGCSPLKRDIVTYIKSGVINLDKPSNPSSHEVVAWLRRILRVEK 100
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+++ +LHSA+ N + +
Sbjct: 101 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVLRLHSALPNPTSLPRAIQTLT 160
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +SNL+ D + + W+ C
Sbjct: 161 GALFQR---------PPLISAVKRQLRIRTIY-ESNLLEFDEKRNLAVFWVSC------- 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VG M ELRR RSG SE D +VT M + + + WV
Sbjct: 204 -----------VGGHMQELRRVRSGALSENDSMVT-----MHDVLDAQWV 237
>gi|340505835|gb|EGR32121.1| hypothetical protein IMG5_095360 [Ichthyophthirius multifiliis]
Length = 439
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 146/220 (66%), Gaps = 14/220 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIK----RIL 56
N+DK+N+R++HYTPL G +PL R+++E+++ G +NLDKPSNPSSHEVVAWIK RI
Sbjct: 66 NYDKMNIRSSHYTPLCNGSTPLSRSVEEHLKYGVINLDKPSNPSSHEVVAWIKKLFDRIT 125
Query: 57 RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKK 116
+ +KTGHSGTLDPK +G LIVC++RATRL K+QQSAGKEY+ I +LH +++ K +K
Sbjct: 126 KMDKTGHSGTLDPKVTGSLIVCLNRATRLAKAQQSAGKEYVGIVRLHQEIQSSNKLNKAL 185
Query: 117 MMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAG 176
+ + K P + E + T +S LI + GI W+ C+AG
Sbjct: 186 QQLTGAVFQK-------PPLISAVKREL---RVRTIYESKLIEYNPEKRLGIFWMSCEAG 235
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
TYVRT CVH+GL+LGVG M ELRR RSGI E LVT
Sbjct: 236 TYVRTLCVHLGLLLGVGGHMEELRRVRSGIMDENKYLVTM 275
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
++ +KK +IK+G+LDKHGKPNE TP +
Sbjct: 397 RSLRKKNLIKEGMLDKHGKPNEKTPNDW 424
>gi|396081419|gb|AFN83036.1| putative rRNA pseudouridine synthase [Encephalitozoon romaleae
SJ-2008]
Length = 357
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 131/224 (58%), Gaps = 37/224 (16%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ DK+ VRTNHYTPL G PL R I EYI+ G VNLDK SNPSSHEVV W+K IL+CEK
Sbjct: 26 DMDKMVVRTNHYTPLGCGSMPLNRKIGEYIKYGIVNLDKSSNPSSHEVVTWVKEILKCEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDP+ SG L +CIDRATRL KSQQS GKEY+ + +
Sbjct: 86 TGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLE---------------- 129
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS--------NLISSDV-----TLSTG 167
+PNE L + ++P M + N+ + D+ G
Sbjct: 130 --------EPNEAEFHKISKRLIGSLLQRPPLMCAVKRELRVRNIYNIDILEFSKEKRVG 181
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
+ + C+AGTYVRT C HMG+++G GA+M ELRR RSG SE+D
Sbjct: 182 LFKVSCEAGTYVRTLCTHMGILMGCGAKMKELRRTRSGRTSEKD 225
>gi|401826417|ref|XP_003887302.1| putative centromere/microtubule binding protein 5 [Encephalitozoon
hellem ATCC 50504]
gi|392998461|gb|AFM98321.1| putative centromere/microtubule binding protein 5 [Encephalitozoon
hellem ATCC 50504]
Length = 357
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 132/212 (62%), Gaps = 13/212 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ DK+ VRTNHYTP G PL R I EYI+ G VNLDK SNPSSHEVV W+K IL+CEK
Sbjct: 26 DMDKMIVRTNHYTPFGCGSMPLNRKIGEYIKYGIVNLDKSSNPSSHEVVTWVKEILKCEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFK-LHSAVENVAKASKKKMMI 119
TGHSGTLDP+ SG L +CIDRATRL KSQQS GKEY+ + + L E+ + + KK+
Sbjct: 86 TGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLEEPDEDGFRRASKKLT- 144
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
G + P + E + + +++ G+ + C+AGTYV
Sbjct: 145 --------GSLFQRPPLMCAVKREL---RIRNIYEIDILEFSKEKRVGLFKVSCEAGTYV 193
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
RT C H+G+++G GA+M ELRR RSG SE+D
Sbjct: 194 RTLCTHIGILMGCGARMKELRRIRSGRTSEKD 225
>gi|449329137|gb|AGE95411.1| centromere/microtubule binding protein [Encephalitozoon cuniculi]
Length = 357
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 135/215 (62%), Gaps = 15/215 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N D++ VRT HYTPL G PL+R I+EYI+ G +N+DK NPSSHEVV W+K IL+CEK
Sbjct: 26 NMDRMVVRTGHYTPLGCGSMPLRRRIEEYIKYGIINVDKSPNPSSHEVVTWVKEILKCEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA--VENVAKASKKKMM 118
TGHSGTLDP+ SG L +CIDRATRL KSQQS GKEY+ + + S E KASK+ +
Sbjct: 86 TGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLSEPDEEGFHKASKRLV- 144
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
G + P + ++ + Y +++ + G+ + C+AGTY
Sbjct: 145 ---------GSLFQRPP--LMCAVKRELRIRNVY-SIDILEFNREKRLGLFKVSCEAGTY 192
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
VRT C H+G+++G GA+M ELRR RSG SE+D
Sbjct: 193 VRTLCTHIGILMGCGARMKELRRTRSGRISEKDAF 227
>gi|19173642|ref|NP_597445.1| CENTROMERE/MICROTUBULE BINDING PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|19170848|emb|CAD26622.1| CENTROMERE/MICROTUBULE BINDING PROTEIN [Encephalitozoon cuniculi
GB-M1]
Length = 357
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 135/215 (62%), Gaps = 15/215 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N D++ VRT HYTPL G PL+R I+EYI+ G +N+DK NPSSHEVV W+K IL+CEK
Sbjct: 26 NMDRMVVRTGHYTPLGCGSMPLRRRIEEYIKYGIINVDKSPNPSSHEVVTWVKEILKCEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA--VENVAKASKKKMM 118
TGHSGTLDP+ SG L +CIDRATRL KSQQS GKEY+ + + S E KASK+ +
Sbjct: 86 TGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLSEPDEEGFHKASKRLV- 144
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
G + P + ++ + Y +++ + G+ + C+AGTY
Sbjct: 145 ---------GSLFQRPP--LMCAVKRELRIRNVY-SIDILEFNREKRLGLFKVSCEAGTY 192
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
VRT C H+G+++G GA+M ELRR RSG SE+D
Sbjct: 193 VRTLCTHIGILMGCGARMKELRRTRSGRISEKDAF 227
>gi|123449142|ref|XP_001313293.1| pseudouridine syntase related protein [Trichomonas vaginalis G3]
gi|121895171|gb|EAY00364.1| pseudouridine syntase related protein, putative [Trichomonas
vaginalis G3]
Length = 391
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 138/215 (64%), Gaps = 11/215 (5%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
+ L R YTPLP G SPL+R +++Y++ G +NLDKPSNPSSHE+V+W+KRIL KT
Sbjct: 26 YSNLVCRDGLYTPLPCGHSPLKRPLKDYMKYGVINLDKPSNPSSHEIVSWVKRILGVAKT 85
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDPK +GCLI+CI+ AT + KSQQ+AGKEY+++ +L V + +++
Sbjct: 86 GHSGTLDPKVTGCLIICIENATCIGKSQQNAGKEYVAVLRLFETVP--------REKLEE 137
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
+ GK + PA ++ ++ + Y + LI D ++ + C+AGTY+RT
Sbjct: 138 AIKFLTGKLYQCPPA--ISAVKKQLRVRQVY-SNELIEYDDEQKLAVMRVACEAGTYIRT 194
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
C H+GL LGVG +M ELRR RSG +E GLVT
Sbjct: 195 LCEHLGLYLGVGGEMAELRRTRSGFTTETCGLVTM 229
>gi|303389361|ref|XP_003072913.1| putative rRNA pseudouridine synthase [Encephalitozoon intestinalis
ATCC 50506]
gi|303302056|gb|ADM11553.1| putative rRNA pseudouridine synthase [Encephalitozoon intestinalis
ATCC 50506]
Length = 357
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 132/213 (61%), Gaps = 15/213 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ DK+ V+TNHYTPL G PL R I EYI+ G +NLDK SNPSSHEVV W+K IL+CEK
Sbjct: 26 DMDKMIVKTNHYTPLGCGSMPLNRKIDEYIKYGIINLDKSSNPSSHEVVTWVKEILKCEK 85
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKL--HSAVENVAKASKKKMM 118
TGHSGTLDP+ SG L VCIDRATRL KSQQS GKEY+ + + + E KA+++ +
Sbjct: 86 TGHSGTLDPQVSGVLTVCIDRATRLTKSQQSLGKEYVCVIEFLEEPSEEGFRKAAERLV- 144
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
G + P + E + +++ + G+ + C+AGTY
Sbjct: 145 ---------GSLFQRPPLMCAVKREL---RIRNIYSIDILEFNKERRLGLFRVSCEAGTY 192
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
VRT C+HMG+++G GA M LRR RSG SE+D
Sbjct: 193 VRTLCMHMGILMGCGAVMKGLRRTRSGRISEKD 225
>gi|218192912|gb|EEC75339.1| hypothetical protein OsI_11747 [Oryza sativa Indica Group]
Length = 563
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 134/239 (56%), Gaps = 53/239 (22%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R I EY+R G +NLDKPSNPSSHEVVAWIKR+LR EK
Sbjct: 76 NYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEK 135
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+S+ + H+AV + A+ ++
Sbjct: 136 TGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVSVARFHAAVPDTARVARA----- 190
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L L A ++P LIS+ +K Q VR
Sbjct: 191 ------------------LEALTGAVFQRPP-----LISA----------VKRQ--LRVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT-------------FRQEHMFEHIV 226
T L + ELRR RSGI E D +VT F E HIV
Sbjct: 216 TIYESKLLEHDADRHLAELRRVRSGILGETDNMVTMHDVMDARWAMDNFNDESYLRHIV 274
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTP 135
A KKK M+ +GLLDKHGKPNE TP
Sbjct: 374 ALKKKKMVAEGLLDKHGKPNEKTP 397
>gi|253744583|gb|EET00773.1| Centromere/microtubule binding protein CBF5 [Giardia intestinalis
ATCC 50581]
Length = 421
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 18/224 (8%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
F++L+VR+ +YTP G +PLQR I+EY++ G +NLDK + PSSHEVVAWI+RIL EKT
Sbjct: 19 FNQLHVRSANYTPTQNGYNPLQRPIREYLKYGIINLDKTAGPSSHEVVAWIRRILEVEKT 78
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDP +GCL+VC+DRATRLVKSQQ GKEY+ + + + + S+K
Sbjct: 79 GHSGTLDPGVTGCLLVCLDRATRLVKSQQLMGKEYVCVLQFRNLSTLKDEDSRKAF---- 134
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS---------NLISSDVTLSTGIIWLK 172
+ + A+L+ P + + +L+ + I+
Sbjct: 135 -----SARLQQALATLRCAQLQLPPKEGCAVKRQLRVREIYTLDLLEFNFKTGQAILRAS 189
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
CQAGTY+RT CVH+GL++G A M+ELRR RSG +E+ +VT
Sbjct: 190 CQAGTYMRTLCVHIGLLMGQEAYMLELRRVRSGELTEKTNMVTL 233
>gi|325303278|tpg|DAA34775.1| TPA_inf: pseudouridine synthase [Amblyomma variegatum]
Length = 214
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 94/103 (91%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRTNHY P+P G +PL+R ++EY+R+G++NLDKP NPSSHEVVAW+KRIL+ EK
Sbjct: 54 NFDKLNVRTNHYVPMPHGSNPLKRELREYVRSGFINLDKPCNPSSHEVVAWVKRILKVEK 113
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH 103
TGHSGTLDPK SGCLIVCI+R TRL KSQQSAGKEY++IFKLH
Sbjct: 114 TGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYVAIFKLH 156
>gi|159107547|ref|XP_001704052.1| Centromere/microtubule binding protein CBF5 [Giardia lamblia ATCC
50803]
gi|157432101|gb|EDO76378.1| Centromere/microtubule binding protein CBF5 [Giardia lamblia ATCC
50803]
Length = 421
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 12/222 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
F++L+VR+ YTP G SPLQR I+E+++ G +NLDK + PSSHEVVAWI+RIL EK
Sbjct: 18 GFNQLHVRSASYTPTQNGYSPLQRPIREHLKYGVINLDKTAGPSSHEVVAWIRRILEVEK 77
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISI--FKLHSAVENVAKASKKKMM 118
TGHSGTLDP +GCL+VC+DRATRLVKSQQ GKEY+ + FK +A+++
Sbjct: 78 TGHSGTLDPGVTGCLLVCLDRATRLVKSQQLMGKEYVCVLQFKDLAALKDEDARKAFSAC 137
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS----NLISSDVTLSTGIIWLKCQ 174
++Q L + P E K+ ++ +L+ + ++ CQ
Sbjct: 138 LQQALATLRCAQLQLPPK------EGCAVKRQLRVREIYTLDLLEFNFKTGQAVLRASCQ 191
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
AGTY+RT CVH+GL++G A M+ELRR RSG +E+ +VT
Sbjct: 192 AGTYMRTLCVHIGLLVGHEAYMLELRRVRSGELTEKTNMVTL 233
>gi|378755245|gb|EHY65272.1| rRNA pseudouridine synthase [Nematocida sp. 1 ERTm2]
Length = 421
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
+ +N+++ YTP +G SPL+R + Y+ G +NLDKP NPSSHE+V+WIK ILRCEKT
Sbjct: 47 LEDMNIKSLKYTPTSYGYSPLERPLNIYLEYGVINLDKPCNPSSHEIVSWIKNILRCEKT 106
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDP SGCL VC+++ATR+ K QQ AGKEY+ + K + K+M IK
Sbjct: 107 GHSGTLDPMVSGCLPVCLNKATRIAKCQQDAGKEYVGVVKFDEGI-------TKEMFIKT 159
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
L+ + P P A +K ++ + D G+ + C+AGTY+R+
Sbjct: 160 --LNLYVGPLLQRPPEQCAVKRNLRIRK--VIEVEYLDFDEEKQLGMFRVACEAGTYIRS 215
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
C H+GL +GV ++M++LRR RSG ED LVT
Sbjct: 216 LCTHLGLHMGVKSEMVDLRRTRSG-AVHEDSLVTM 249
>gi|310792416|gb|EFQ27943.1| TruB family pseudouridylate synthase [Glomerella graminicola
M1.001]
Length = 473
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 132/198 (66%), Gaps = 9/198 (4%)
Query: 19 KSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVC 78
++PL+R I+ YI +G +NLDKPSNPSSHEVVAW+KR+LR EKTGHSGTLDPK +GCLIVC
Sbjct: 40 RNPLKRDIKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVC 99
Query: 79 IDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY 138
IDRATRLVKSQQSAGKEY+++ +LH K ++ + L G + P
Sbjct: 100 IDRATRLVKSQQSAGKEYVAVIRLHD------KLPGGQVQFARALETLTGALFQRPPLIS 153
Query: 139 LAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIE 198
+ + + T +S LI D G+ W+ C+AGTY+RT CVH+GL+LGVG M E
Sbjct: 154 AVKRQL---RIRTIHESKLIEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQE 210
Query: 199 LRRNRSGIQSEEDGLVTF 216
LRR RSG E G+VT
Sbjct: 211 LRRVRSGAMDETKGMVTL 228
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
AS+KK + G LDK+G+PNE TPA +++E
Sbjct: 351 ASEKKKLKADGKLDKYGRPNEATPAKWVSE 380
>gi|387593663|gb|EIJ88687.1| centromere/microtubule-binding protein CBF5 [Nematocida parisii
ERTm3]
gi|387597319|gb|EIJ94939.1| centromere/microtubule-binding protein CBF5 [Nematocida parisii
ERTm1]
Length = 422
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 133/225 (59%), Gaps = 14/225 (6%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
+ +N+++ YTP +G PL+R + Y+ G +NLDKP NPSSHE+V+WIK ILRCE+T
Sbjct: 47 MEDMNIKSLKYTPTSYGYCPLERPLDIYLEYGVINLDKPCNPSSHEIVSWIKSILRCERT 106
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GHSGTLDP SGCL VC+++ATR+ K QQ AGKEY+ + K V SK+K +
Sbjct: 107 GHSGTLDPMVSGCLPVCLNKATRIAKCQQDAGKEYVGVVKFDEGV------SKEKFIEAL 160
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
L P P A +K ++ + D G+ + C+AGTY+R+
Sbjct: 161 NLF---VGPLLQRPPEQCAVKRNLRIRKVNQVE--YLDFDEEKQLGLFRVDCEAGTYIRS 215
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ--EHMFEH 224
C H+GL LGV ++M++LRR RSG S ED LVT + M+ H
Sbjct: 216 LCTHLGLYLGVKSEMVDLRRTRSGAVS-EDNLVTMHDVLDAMYLH 259
>gi|115438500|ref|XP_001218082.1| centromere/microtubule-binding protein cbf5 [Aspergillus terreus
NIH2624]
gi|114188897|gb|EAU30597.1| centromere/microtubule-binding protein cbf5 [Aspergillus terreus
NIH2624]
Length = 464
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 124/216 (57%), Gaps = 24/216 (11%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + ++ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFRRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + P ++ ++ T +L G +V
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIRTIPREQALRVRQR--------ETPRCFLGELRGRHVY 203
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
Y ELRR RSG E G+VT
Sbjct: 204 PYS--------------ELRRVRSGAMDENSGMVTL 225
>gi|240277318|gb|EER40827.1| centromere/microtubule binding protein cbf5 [Ajellomyces capsulatus
H143]
Length = 201
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 91/106 (85%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G +PL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAV 106
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKI 139
>gi|291235422|ref|XP_002737644.1| PREDICTED: centromere/microtubule binding protein cbf5,
putative-like [Saccoglossus kowalevskii]
Length = 378
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 90/104 (86%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+RT HY PLP G SPL+R + +Y+ +G++NLDKP+NPSSHEVV+W+KRILR EK
Sbjct: 58 NFDKLNIRTGHYVPLPNGASPLKRELNDYLSSGFINLDKPANPSSHEVVSWVKRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHS 104
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGK S+ L+S
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKLQYSLLNLYS 161
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS K MIK+G L+K+GKPNE TPA++
Sbjct: 245 KASLVKKMIKEGKLNKYGKPNEETPANW 272
>gi|198435755|ref|XP_002131921.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 159
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N ++LN+RTNHYTPLPFG SPL+R I EY+R G++NLDKP+NPSSHEVVAW++RIL+ EK
Sbjct: 51 NHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFINLDKPANPSSHEVVAWLRRILKVEK 110
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK-EYISIF 100
TGHSGTLDPK +GCLIVC++RATRLVKSQQSAG+ Y++I
Sbjct: 111 TGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGQLMYLNIM 151
>gi|125549421|gb|EAY95243.1| hypothetical protein OsI_17062 [Oryza sativa Indica Group]
Length = 288
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R V LD+P VVAWIKR+LR KTGHSGTLDPK +G LIVC+DRATRLVKSQQ
Sbjct: 87 RPPRVRLDRP------WVVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQ 140
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
AGKEY+ + + H+AV + A+A + G + P + + +
Sbjct: 141 GAGKEYVCVARFHAAVPDTARAFEALT----------GAMFQRLPLISAVKRQL---RVR 187
Query: 151 TYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
T +S L+ D + W+ C+AGTYVRT CVH+GL+LGVGA M EL R RSGI E+
Sbjct: 188 TIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQ 247
Query: 211 DGLVTF 216
D +VT
Sbjct: 248 DNMVTM 253
>gi|257206226|emb|CAX82764.1| Nucleolar protein [Schistosoma japonicum]
Length = 163
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 90/118 (76%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM 118
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K K +
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVKKIQKAKSI 163
>gi|56752805|gb|AAW24614.1| unknown [Schistosoma japonicum]
Length = 176
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 88/114 (77%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N +NVR H+ G SPL R + EYI++G +NLDKP NPSSHEVVAW+KR L K
Sbjct: 46 NVHLMNVRECHFEADTTGFSPLHRPLDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASK 114
TGHSGTLDPK SGCLIVCIDRATRLVKSQQSAGKEY+ IF+LH +V++V K K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCIFRLHDSVDDVQKIQK 159
>gi|429961806|gb|ELA41350.1| tRNA pseudouridine synthase B [Vittaforma corneae ATCC 50505]
Length = 339
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 17/213 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N D++ V++ + P G P+ R I EY++ G V +DKP+NPSSHEVV W+K IL CEK
Sbjct: 10 NQDQMVVKSRDHNPSGHGTMPVNRPIGEYLKYGVVTVDKPANPSSHEVVTWVKGILDCEK 69
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISI--FKLHSAVENVAKASKKKMM 118
TGHSGTLDPK +G L +C++RATRL KSQQ+AGK Y+ F + E + A +K
Sbjct: 70 TGHSGTLDPKVTGVLSICLNRATRLTKSQQNAGKTYVCCIEFDTETTAEKFSNACRKLT- 128
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
G + P + ++ + Y N+I + T + ++C+AG+Y
Sbjct: 129 ---------GHLFQRPPV--MCAVKRDLRLRWIY-AINII--EFTPKMALFEVRCEAGSY 174
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
+RT C H+GL +G GA M +LRR +SG+ +E++
Sbjct: 175 IRTLCTHIGLYIGCGAAMADLRRTQSGLTTEDE 207
>gi|440493772|gb|ELQ76199.1| Pseudouridine synthase [Trachipleistophora hominis]
Length = 387
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 127/211 (60%), Gaps = 11/211 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ DK+ V+T+ +T G P +R + EY++ G + LDKP NPSSHEVV WIK IL+ EK
Sbjct: 57 DIDKMFVKTSCFTTQGRGSYPEKRKMSEYLKYGVIYLDKPKNPSSHEVVTWIKNILKVEK 116
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH GTLDPK SG L V ++R TRL K +Q+AGKEY+ I ++ K S++K K
Sbjct: 117 TGHGGTLDPKVSGVLTVYLNRGTRLSKIEQNAGKEYVCIVQID------GKVSEEKF--K 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVT-LSTGIIWLKCQAGTYV 179
L G+ + P ++ ++ + Y L +V +S G+ + C+AGTY+
Sbjct: 169 DALRFFEGRLIQRPPL--ISAVKRNVRMRSVYKNEFLELKEVDGVSYGLFKVSCEAGTYI 226
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
R C H+GL +G+ A+M+ELRR RSG EE
Sbjct: 227 RVLCEHIGLYMGIKAEMLELRRTRSGSIREE 257
>gi|302421366|ref|XP_003008513.1| centromere/microtubule-binding protein CBF5 [Verticillium
albo-atrum VaMs.102]
gi|261351659|gb|EEY14087.1| centromere/microtubule-binding protein CBF5 [Verticillium
albo-atrum VaMs.102]
Length = 459
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 117/198 (59%), Gaps = 15/198 (7%)
Query: 19 KSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVC 78
++PL+R I+ YI +G +NLDKPSNPSSHEVVAW+KR+LR + H + K S
Sbjct: 40 RNPLKRDIKSYISSGVINLDKPSNPSSHEVVAWLKRMLRFNASRHPDPIANKPS------ 93
Query: 79 IDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY 138
IDRATRLVKSQQ AGKEY+ + +LH K ++ + L G + P
Sbjct: 94 IDRATRLVKSQQGAGKEYVCVIRLHD------KLPGGQVQFARALETLTGALFQRPPLIS 147
Query: 139 LAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIE 198
+ + + T +S +I D G+ W+ C+AGTY+RT CVH+GL+LGVGA M E
Sbjct: 148 AVKRQL---RIRTIHESKVIEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQE 204
Query: 199 LRRNRSGIQSEEDGLVTF 216
LRR RSG E GLVT
Sbjct: 205 LRRVRSGAMDENKGLVTL 222
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
+AS+KK M G LDK+G+PNE TPA +++E
Sbjct: 344 QASEKKKMKADGKLDKYGRPNEATPAKWVSE 374
>gi|269859328|ref|XP_002649389.1| centromere/microtubule binding protein cbf5 [Enterocytozoon
bieneusi H348]
gi|220067152|gb|EED44619.1| centromere/microtubule binding protein cbf5 [Enterocytozoon
bieneusi H348]
Length = 355
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 118/214 (55%), Gaps = 23/214 (10%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N D+L R Y P G P R I++YI G +N+DKPSNPSSHEV W+K IL C K
Sbjct: 17 NIDQLITRDTTYVPSGNGCMPKNRPIKKYIDYGIINIDKPSNPSSHEVTTWVKTILNCNK 76
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKK 115
TGHSGTLDP +G L VCI+RATRL KSQQS GK YI + + + N K
Sbjct: 77 TGHSGTLDPNVTGVLTVCINRATRLAKSQQSLGKTYICVIQFEKEISEKKFINACKKLTG 136
Query: 116 KMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQA 175
++ + LL + + LE + NK G+I + C+A
Sbjct: 137 HLLQRPPLLCAVKRELRLRWIYSIKILEFSGNK------------------GLIEVYCEA 178
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
G+Y+RT C+H+GL +GV A+M +LRR +SG +E
Sbjct: 179 GSYIRTLCMHIGLYVGVPAEMADLRRIKSGNVTE 212
>gi|70922453|ref|XP_734390.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56507087|emb|CAH83896.1| hypothetical protein PC300741.00.0 [Plasmodium chabaudi chabaudi]
Length = 122
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 85/95 (89%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLN+R++H+TPLP G SP R ++EY++ G +NLDKPSNPSSHEVV+WI++ILRCEK
Sbjct: 28 NYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINLDKPSNPSSHEVVSWIRKILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKE 95
TGHSGTLDPK +G L+VC++RATRLVKSQQ +GK+
Sbjct: 88 TGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKD 122
>gi|429964508|gb|ELA46506.1| tRNA pseudouridine synthase B [Vavraia culicis 'floridensis']
Length = 428
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 123/214 (57%), Gaps = 17/214 (7%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ DK+ V+T+ +T G P +R ++EY++ G + LDKP NPSSHEVV WIK ILR EK
Sbjct: 48 DIDKMIVKTSCFTTQGRGSYPEKRKMEEYLKYGVIYLDKPRNPSSHEVVTWIKNILRVEK 107
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASK--KK 116
TGH GTLDPK SG L V ++R TRL K +Q+AGKEY+ I ++ V E A + +
Sbjct: 108 TGHGGTLDPKVSGVLTVYLNRGTRLSKIEQNAGKEYVCIIRIDGDVNEEKFRDALRFFEG 167
Query: 117 MMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAG 176
+I++ L K N + Y E + Y G+ + C+AG
Sbjct: 168 RLIQRPPLISAVKRNVRMRSVYRNEFLELRKVESAYY-------------GLFKVSCEAG 214
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
TY+R C H+GL LG+ A+M+ELRR RSG EE
Sbjct: 215 TYIRVLCEHIGLYLGMKAEMLELRRIRSGSIREE 248
>gi|297603219|ref|NP_001053623.2| Os04g0576300 [Oryza sativa Japonica Group]
gi|255675709|dbj|BAF15537.2| Os04g0576300, partial [Oryza sativa Japonica Group]
Length = 198
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 48 VVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVE 107
VVAWIKR+LR KTGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+A
Sbjct: 38 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAADT 97
Query: 108 NVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG 167
A + M ++ L K Y +S L+ D
Sbjct: 98 ARALEALTGAMFQRLPLISAVKRQLRVRTIY---------------ESKLLEHDAERHLA 142
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+ C+AGTYVRT CVH+GL+LGVGA M EL R RSGI E+D +VT
Sbjct: 143 VFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTM 191
>gi|222629409|gb|EEE61541.1| hypothetical protein OsJ_15862 [Oryza sativa Japonica Group]
Length = 347
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 48 VVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVE 107
VVAWIKR+LR KTGHSGTLDPK +G LIVC+DRATRLVKSQQ AGKEY+ + + H+A
Sbjct: 159 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAADT 218
Query: 108 NVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG 167
A + M ++ L K Y +S L+ D
Sbjct: 219 ARALEALTGAMFQRLPLISAVKRQLRVRTIY---------------ESKLLEHDAERHLA 263
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ W+ C+AGTYVRT CVH+GL+LGVGA M EL R RSGI E+D +VT
Sbjct: 264 VFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTM 312
>gi|14520738|ref|NP_126213.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus abyssi GE5]
gi|13959604|sp|Q9V1A5.1|TRUB_PYRAB RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|112490021|pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
gi|112490023|pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
gi|5457954|emb|CAB49444.1| truB tRNA pseudouridine synthase II [Pyrococcus abyssi GE5]
gi|380741277|tpe|CCE69911.1| TPA: H/ACA RNA-protein complex component Cbf5p [Pyrococcus abyssi
GE5]
Length = 334
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 118/204 (57%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIKRIL EK GH GTLDPK SG L
Sbjct: 31 WGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ +A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEI------------LEIDGRDVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|14591414|ref|NP_143494.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus horikoshii
OT3]
gi|3915184|sp|O59357.1|TRUB_PYRHO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|3258073|dbj|BAA30756.1| 334aa long hypothetical centromere/microtubule binding protein
[Pyrococcus horikoshii OT3]
Length = 334
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 116/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIKRIL EK GH GTLDPK SG L
Sbjct: 31 WGFPPYERPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V +V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPENKIIDVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEILE-------------IDGRDVLFKVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ LVT
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTL 217
>gi|337283743|ref|YP_004623217.1| rRNA pseudouridine synthase [Pyrococcus yayanosii CH1]
gi|334899677|gb|AEH23945.1| rRNA pseudouridine synthase, putative [Pyrococcus yayanosii CH1]
Length = 333
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIKR+ EK GH GTLDPK SG L
Sbjct: 30 WGYPPEKRPMEMHMQFGVINLDKPPGPTSHEVVAWIKRLFNLEKAGHGGTLDPKVSGVLP 89
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASK--KKMMIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E + + K + +I++ L K
Sbjct: 90 VALERATRVVQALLPAGKEYVALMHLHGDVPEEKIYRVMKEFEGEIIQRPPLRSAVKRRL 149
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 150 RTRKVYYIEI------------LEIDGRDVLFRAGV-----EAGTYIRSLIHHIGLALGV 192
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVTF
Sbjct: 193 GAHMAELRRTRSGPFKEDETLVTF 216
>gi|154337332|ref|XP_001564899.1| putative centromere/microtubule binding protein cbf5, partial
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061937|emb|CAM38978.1| putative centromere/microtubule binding protein cbf5, partial
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 95
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 81/95 (85%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
+N+R+ H+T L G SPL+R + EYI+ G +N+DKPSNPSSHEVV+WIKRIL+C+KTGH+
Sbjct: 1 MNIRSTHFTLLECGWSPLRRPLSEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDKTGHA 60
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISI 99
GTLDPK +G LI+C DRATRLVKSQQ+AGK YI +
Sbjct: 61 GTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGV 95
>gi|296817373|ref|XP_002849023.1| centromere/microtubule-binding protein cbf5 [Arthroderma otae CBS
113480]
gi|238839476|gb|EEQ29138.1| centromere/microtubule-binding protein cbf5 [Arthroderma otae CBS
113480]
Length = 448
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 96/158 (60%), Gaps = 9/158 (5%)
Query: 59 EKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM 118
EKTGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + + +
Sbjct: 49 EKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGQAQFARALE 108
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
G L + +P + + T +S L D G+ W+ C+AGTY
Sbjct: 109 TLSGALFQ--RPPLISAVKRQLRIR-------TIYESKLYEFDNDRHLGVFWVSCEAGTY 159
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+RT CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 160 IRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 197
>gi|341582033|ref|YP_004762525.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. 4557]
gi|340809691|gb|AEK72848.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. 4557]
Length = 334
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 116/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIKR+ K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWIKRLFDLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V EN +A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPENKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ K DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEILEIDGK------------DVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|119874619|gb|ABM05786.1| dyskerin [Triops longicaudatus]
Length = 219
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 97/149 (65%), Gaps = 10/149 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCIDRATRLVKSQQ AGKEY+ IFKLHS+VE V K ++ +K L +
Sbjct: 1 TGCLIVCIDRATRLVKSQQGAGKEYVCIFKLHSSVEKVTKVAQCLERLKGALFQR----- 55
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
++ ++ + Y +S LI D + + GI W+ C+AGTY+RT CVH+GL+LG
Sbjct: 56 ----PPLISAVKRQLRVRTVY-ESKLIEYDESKNMGIFWVSCEAGTYIRTMCVHLGLMLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTFRQEH 220
VG QM ELRR RSGIQSE G+VT H
Sbjct: 111 VGGQMQELRRVRSGIQSENQGMVTMTDVH 139
>gi|288931536|ref|YP_003435596.1| rRNA pseudouridine synthase [Ferroglobus placidus DSM 10642]
gi|288893784|gb|ADC65321.1| rRNA pseudouridine synthase [Ferroglobus placidus DSM 10642]
Length = 335
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 122/209 (58%), Gaps = 15/209 (7%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
D+ V+ +G P R IQEYIR G+V +DKP P+SHEVV W+++IL EKTG
Sbjct: 5 DRFLVKDEAKPSEEYGCYPYNRPIQEYIRKGFVLIDKPKGPTSHEVVVWVRKILEVEKTG 64
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQG 122
H+GTLDPK +G L V I++AT+LV+ Q + KEY+++ +LH V S++++
Sbjct: 65 HAGTLDPKVTGVLPVFIEQATKLVQFLQGSEKEYVALMRLHGDV------SERELRKVFE 118
Query: 123 LLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRT 181
L GK + P L++A K+ + I ++ + + C+AGTYVR
Sbjct: 119 LF--KGKIYQRPP------LKSAVKKRLRVREIYDIEILEIDGRDVLFRVVCEAGTYVRK 170
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
C +G +LGVGA M ELRR R+GI +EE
Sbjct: 171 LCTDIGEILGVGAHMQELRRIRTGIFTEE 199
>gi|375083510|ref|ZP_09730530.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus litoralis
DSM 5473]
gi|374741837|gb|EHR78255.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus litoralis
DSM 5473]
Length = 335
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +++ G +NLDKP P+SHEVVAW+K++L +K GH GTLDPK +G L
Sbjct: 32 WGFPPDKRPIEMHMQFGVINLDKPPGPTSHEVVAWVKKLLNLQKAGHGGTLDPKVTGVLP 91
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ +A K+ +I++ L K
Sbjct: 92 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRRL 151
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 152 RTRKVYYIEI------------IEIEGKDVLFRVGV-----EAGTYIRSLIHHIGLALGV 194
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 195 GAHMAELRRTRSGPFKEDETLVTL 218
>gi|241913454|pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
gi|241913459|pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 24 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 83
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 84 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 143
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 144 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 185
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 186 VGAHMSELRRTRSGPFKEDETLITL 210
>gi|57641444|ref|YP_183922.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus
kodakarensis KOD1]
gi|62901179|sp|Q5JJE8.1|TRUB_PYRKO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|57159768|dbj|BAD85698.1| tRNA pseudouridine synthase B [Thermococcus kodakarensis KOD1]
Length = 338
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 114/205 (55%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAW+KRIL K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGIINLDKPPGPTSHEVVAWVKRILNLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVEN-----VAKASKKKMMIKQGLLDKHGKPN 131
V ++RATR+V++ AGKEY+++ LH V V + + +++ + L +
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKILAVMREFQGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIDVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ LVT
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTL 217
>gi|315583491|pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 24 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 83
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 84 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 143
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 144 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 185
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 186 VGAHMSELRRTRSGPFKEDETLITL 210
>gi|88192797|pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
gi|88192798|pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 193 VGAHMSELRRTRSGPFKEDETLITL 217
>gi|18978157|ref|NP_579514.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus DSM
3638]
gi|397652567|ref|YP_006493148.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus
COM1]
gi|62901346|sp|Q7LWY0.1|TRUB_PYRFU RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|300508488|pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
gi|300508493|pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
gi|300508498|pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
gi|300508503|pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
gi|300508508|pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
gi|18893962|gb|AAL81909.1| centromere binding protein homolog/pseudouridine synthase
[Pyrococcus furiosus DSM 3638]
gi|393190158|gb|AFN04856.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus
COM1]
Length = 340
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 193 VGAHMSELRRTRSGPFKEDETLITL 217
>gi|116667872|pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
gi|241913415|pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
gi|241913420|pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 193 VGAHMSELRRTRSGPFKEDETLITL 217
>gi|332157871|ref|YP_004423150.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. NA2]
gi|331033334|gb|AEC51146.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. NA2]
Length = 339
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+I EK GH GTLDPK SG L
Sbjct: 31 WGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKKIFNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASK--KKMMIKQGLLDKHGKPNE 132
V +++ATR+V++ AGKEY+++ LH V + + + K + +I++ L K
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDRIVQVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEI------------LEIDGRDVLFRAGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|390960764|ref|YP_006424598.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. CL1]
gi|390519072|gb|AFL94804.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. CL1]
Length = 334
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIKR+ K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWIKRLFNLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGEVPEDKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ K DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEILEIDGK------------DVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|20093573|ref|NP_613420.1| H/ACA RNA-protein complex component Cbf5p [Methanopyrus kandleri
AV19]
gi|37089078|sp|Q8TZ08.1|TRUB_METKA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|19886426|gb|AAM01350.1| Pseudouridine synthase of the TruB family [Methanopyrus kandleri
AV19]
Length = 338
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 13/207 (6%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+EYI G +NLDKP+ P+SHEVVAW+K I K GH GTLDPK +G L
Sbjct: 29 YGCPPEERPIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLP 88
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ +++AT+++++ AGKEY++I LH V+ + + ++K+ G + P
Sbjct: 89 IALEKATKIIQTLLPAGKEYVTIMHLHGDVDE----EELERVVKE----FEGTILQRPPL 140
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ P K + DV + G CQAGTY+R C +G LGVGA M
Sbjct: 141 RSAVKRRVRPKKIYYIDILEIDGRDVLMRVG-----CQAGTYIRKLCHDIGEALGVGAHM 195
Query: 197 IELRRNRSGIQSEEDGLVTFRQEHMFE 223
ELRR R+G SEE+ + + +E
Sbjct: 196 AELRRTRTGPFSEENAVTLHDVKDAYE 222
>gi|312137105|ref|YP_004004442.1| tRNA pseudouridine synthase b [Methanothermus fervidus DSM 2088]
gi|311224824|gb|ADP77680.1| tRNA pseudouridine synthase B [Methanothermus fervidus DSM 2088]
Length = 329
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V++ T +G SP R I+EYI G VNLDKP+ P+SHEV AW+++IL +K GH GT
Sbjct: 6 VKSEANTNPKYGCSPEDRPIEEYIAKGVVNLDKPAGPTSHEVAAWVRKILGVKKVGHGGT 65
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +G L + I++ATR++ A KEY+ + +LH V+ I++ L +
Sbjct: 66 LDPKVTGVLPIGIEKATRIMPLLLKAKKEYVCLMRLHKKVDEEE--------IRKILEEF 117
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
GK + P + E + + DV G C+AGTY+R YC +
Sbjct: 118 QGKIFQTPPLRSAVKRELRVRRIYYVKLLEIEGKDVLFRIG-----CEAGTYIRKYCYDV 172
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G LGVGA M ELRR G E+D LVT
Sbjct: 173 GEALGVGAHMAELRRTMVGPFKEDDTLVTL 202
>gi|315229889|ref|YP_004070325.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
gi|315182917|gb|ADT83102.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
Length = 334
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +++ G +NLDKP P+SHEVVAWIKR+ +K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHMQFGIINLDKPPGPTSHEVVAWIKRLFNLKKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASK--KKMMIKQGLLDKHGKPNE 132
V +++ATR+V++ AGKEY+++ LH V + + K K + +I++ L K
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIYKVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ K DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEILEIDGK------------DVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|389852948|ref|YP_006355182.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. ST04]
gi|388250254|gb|AFK23107.1| putative H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp.
ST04]
Length = 334
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK++ EK GH GTLDPK SG L
Sbjct: 31 WGFPPDKRPIELHIQFGVINLDKPPGPTSHEVVAWIKKLFNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV--ENVAKASK--KKMMIKQGLLDKHGKPNE 132
V +++ATR+V++ AGKEY+++ LH V + + + K + +I++ L K
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIVQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEI------------LEIEGRDVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|408381892|ref|ZP_11179439.1| H/ACA RNA-protein complex component Cbf5p [Methanobacterium
formicicum DSM 3637]
gi|407815340|gb|EKF85925.1| H/ACA RNA-protein complex component Cbf5p [Methanobacterium
formicicum DSM 3637]
Length = 320
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+E++ G +NLDKPS P+SHE+ AW+KRIL CEKTGH GTLDP+ +G L
Sbjct: 16 YGTKPEERPIEEHLSRGIINLDKPSGPTSHEIDAWVKRILPCEKTGHGGTLDPRVTGVLP 75
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ ID ATR ++ A KEY+ + +LH E+V + S I+ L + GK + P
Sbjct: 76 IGIDNATRAIQLLLEAPKEYVCLMRLH---EDVGETS-----IRDILGEFTGKIFQTPPM 127
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ E + T N++ D + + C+AGTY+R YC +G LG GA M
Sbjct: 128 RSAVKREL---RVRTIYYVNILEIDG--QDALFRIGCEAGTYIRKYCHDIGEALGCGAHM 182
Query: 197 IELRRNRSGIQSEEDGLVTFRQ 218
ELRR R +E++ L T +
Sbjct: 183 AELRRTRVADFTEDETLKTLQD 204
>gi|409096152|ref|ZP_11216176.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus zilligii
AN1]
Length = 334
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIK++L K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPLEMHMQFGVINLDKPPGPTSHEVVAWIKKLLNLSKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V I RATR+V++ AGKEY+++ LH V E+ A K+ +I++ L K
Sbjct: 91 VAIGRATRVVQALLPAGKEYVALMHLHGDVPEDKILAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTYVR+ H+GL LGV
Sbjct: 151 RTRKVYYIEV------------LEIEGRDVLFRAGV-----EAGTYVRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|325958561|ref|YP_004290027.1| tRNA pseudouridine synthase B [Methanobacterium sp. AL-21]
gi|325329993|gb|ADZ09055.1| tRNA pseudouridine synthase B [Methanobacterium sp. AL-21]
Length = 320
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L +++ T +G P R I+E+I G VNLDKP P+SHEV AW+KRIL EKTGH
Sbjct: 3 ELLIKSEGETDPNYGCDPNNRPIEEHINTGVVNLDKPMGPTSHEVDAWVKRILDVEKTGH 62
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L + I+R+TR+++ + KEY+ + +LH E++++ S I+ L
Sbjct: 63 GGTLDPKVTGVLPIGINRSTRVIQMLLGSPKEYVCLMRLH---ESISEDS-----IRNIL 114
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ GK + P + E + T N++ D + + C+ GTY+R YC
Sbjct: 115 QEFTGKIFQTPPIKSAVKREL---RVRTIYDVNILEIDD--KDVLFRINCEGGTYIRKYC 169
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G LG+GA M ELRR +SG +E++ L T +
Sbjct: 170 HDIGEALGIGAHMAELRRTKSGPFTEDETLKTLQD 204
>gi|212223242|ref|YP_002306478.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus onnurineus
NA1]
gi|226708676|sp|B6YSP4.1|TRUB_THEON RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|212008199|gb|ACJ15581.1| tRNA pseudouridine synthase B [Thermococcus onnurineus NA1]
Length = 334
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAW+K++ K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGEVPEDKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ K DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEILEIDGK------------DVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|223477864|ref|YP_002582357.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
gi|214033090|gb|EEB73918.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
Length = 334
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 113/205 (55%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +++ G +NLDKP P+SHEVVAWIK++ K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVEN-----VAKASKKKMMIKQGLLDKHGKPN 131
V ++RATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIDVLE-------------IDGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ LVT
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTL 217
>gi|167013309|pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 114/205 (55%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTL PK SG L
Sbjct: 27 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLP 86
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 87 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 146
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 147 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 188
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 189 VGAHMSELRRTRSGPFKEDETLITL 213
>gi|116754990|ref|YP_844108.1| putative rRNA pseudouridine synthase [Methanosaeta thermophila PT]
gi|116666441|gb|ABK15468.1| tRNA pseudouridine synthase B [Methanosaeta thermophila PT]
Length = 321
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 30/220 (13%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R +QE++R G +NLDKPS P+SHEVVAW+KRIL EK GHSGTLDP+ +G L
Sbjct: 11 YGCFPDRRPLQEHLRLGAINLDKPSGPTSHEVVAWVKRILGLEKAGHSGTLDPRVTGILP 70
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
V ATR+V+ +AGKEY+ + + H V +KK++
Sbjct: 71 VLTGDATRVVEFLLTAGKEYVCLMRTHEQV------PRKKIL--------------EVCE 110
Query: 137 SYLAELEAAPNKKPTYMKS----NLISSDVTLSTG---IIWLKCQAGTYVRTYCVHMGLV 189
+ E+ P K + ++ + DV G ++ + C+AGTY+R C MGL
Sbjct: 111 EFSGEIYQRPPLKSSVARNLRTRKIYYIDVLEIEGQRVLMKVGCEAGTYIRKLCYDMGLA 170
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
LG GA M ELRR ++G +E++ LVT H + W
Sbjct: 171 LGCGANMEELRRTKAGPFAEDETLVTL---HNLKDAYEIW 207
>gi|119874605|gb|ABM05779.1| dyskerin [Asterias rubens]
Length = 239
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 94/143 (65%), Gaps = 10/143 (6%)
Query: 74 CLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNEN 133
CLIVCI++ATRLVKSQQSAGKEY+ I +LHSAVEN +K ++ + L + P +
Sbjct: 1 CLIVCIEKATRLVKSQQSAGKEYVCIVRLHSAVENESKLARAIETLTGALFQR--PPLIS 58
Query: 134 TPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
L + T +S L+ D GI WL C+AGTYVRT CVH+GL+LGVG
Sbjct: 59 AVKRQL--------RVRTVYESKLLEFDDKRHLGIFWLSCEAGTYVRTLCVHLGLLLGVG 110
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
AQM ELRR RSGIQSE++GLVT
Sbjct: 111 AQMAELRRVRSGIQSEKEGLVTM 133
>gi|240104029|ref|YP_002960338.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus
gammatolerans EJ3]
gi|259550546|sp|C5A255.1|TRUB_THEGJ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|239911583|gb|ACS34474.1| Centromere binding protein CBF5/pseudouridine synthase truB-like
protein (truB) [Thermococcus gammatolerans EJ3]
Length = 334
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIK++ K GH GTLDPK SG L
Sbjct: 31 WGFPPERRPMEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH + E+ A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDIPEDKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEV------------LEIEGRDVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>gi|119874607|gb|ABM05780.1| dyskerin [Astropecten brasiliensis]
Length = 241
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI RATRLVKSQQSAGKEY+ I +LHSA++N A+ ++ + L + P
Sbjct: 1 TGCLIVCISRATRLVKSQQSAGKEYVCIVRLHSAIDNQAQLARTLETLTGALFQR--PPL 58
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ L + T +S LI D GI WL C+AGTYVRT CVH+GL+LG
Sbjct: 59 ISAVKRQL--------RVRTVYESKLIEYDDKRHLGIFWLSCEAGTYVRTLCVHIGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VG QM ELRR RSGIQSE+D LVT M + + + WV
Sbjct: 111 VGGQMAELRRVRSGIQSEKDHLVT-----MHDVLDAQWV 144
>gi|327401041|ref|YP_004341880.1| tRNA pseudouridine synthase B [Archaeoglobus veneficus SNP6]
gi|327316549|gb|AEA47165.1| tRNA pseudouridine synthase B [Archaeoglobus veneficus SNP6]
Length = 339
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 15/208 (7%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++ V+ T +G P R ++EYI+ G+V +DKP PSSHEVV W++RIL KTG
Sbjct: 14 ERFYVKDEATTDESYGCYPYNRPMEEYIKKGFVCVDKPMGPSSHEVVVWVRRILNVNKTG 73
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQG 122
H+GTLDP+ +G L V I+ +T+LVK Q + KEY+++ +LH+ V + +
Sbjct: 74 HTGTLDPRVTGVLPVMIEDSTKLVKVLQGSEKEYVALMRLHADVREEEIRRVMNLFV--- 130
Query: 123 LLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRT 181
GK + P L++A K+ + I ++ + ++C+AGTY+R
Sbjct: 131 -----GKIYQRPP------LKSAVKKRIRVREIYGIEILEIDGRDVLFKVRCEAGTYIRK 179
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSE 209
C +G VLGVGA M ELRR R+G+ E
Sbjct: 180 LCTDIGEVLGVGAHMQELRRTRTGVFDE 207
>gi|242398328|ref|YP_002993752.1| Probable tRNA pseudouridine synthase B [Thermococcus sibiricus MM
739]
gi|242264721|gb|ACS89403.1| Probable tRNA pseudouridine synthase B [Thermococcus sibiricus MM
739]
Length = 339
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +++ G ++LDKP P+SHEVVAWIK++L +K GH GTLDPK +G L
Sbjct: 36 WGFPPEKRPIEMHMQFGIISLDKPPGPTSHEVVAWIKKLLNLQKAGHGGTLDPKVTGVLP 95
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
V ++RATR+V++ AGKEY+++ LH V K ++++K+ G+ + P
Sbjct: 96 VALERATRVVQALLPAGKEYVALMHLHGEVPE----DKIRVVMKEF----EGEIIQRPPL 147
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ K + DV G+ +AGTY+R+ H+GL LGVGA M
Sbjct: 148 RSAVKRRLRTRKVYYIDVLEIEGKDVLFRVGV-----EAGTYIRSLIHHIGLALGVGAHM 202
Query: 197 IELRRNRSGIQSEEDGLVTF 216
ELRR RSG E++ LVT
Sbjct: 203 SELRRTRSGPFKEDETLVTL 222
>gi|288560155|ref|YP_003423641.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
ruminantium M1]
gi|288542865|gb|ADC46749.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
ruminantium M1]
Length = 320
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 17/206 (8%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
D +++ T +G +P +R I+E+I G +NLDKPS P+SHEV +W+KRIL C KT
Sbjct: 1 MDDYLIKSKSETNPEYGCNPYERPIEEHIAKGIINLDKPSGPTSHEVDSWVKRILGCNKT 60
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKMMIK 120
GH GTLDPK +G L + ID ATR+ + AGKEY+ + LH + E+ K
Sbjct: 61 GHGGTLDPKVTGVLPIGIDNATRVSQLLLPAGKEYVCLMHLHREIPEDQVK--------- 111
Query: 121 QGLLDKH-GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
G+ ++ GK + P + E + DV G C+AGTYV
Sbjct: 112 -GIFNEFTGKIYQTPPVKSAVKRELRVRNIYYSTIYEIEGQDVLFRIG-----CEAGTYV 165
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
RTYC +G LG GA M ELRR R G
Sbjct: 166 RTYCHDIGEALGCGAHMAELRRTRVG 191
>gi|284162947|ref|YP_003401570.1| rRNA pseudouridine synthase [Archaeoglobus profundus DSM 5631]
gi|284012944|gb|ADB58897.1| rRNA pseudouridine synthase [Archaeoglobus profundus DSM 5631]
Length = 333
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++ V+ T +G +P +R +++YI+ G+V +DKP PSSHEVV W++RIL EKTG
Sbjct: 15 ERFYVKEEGETDEKYGCNPFKRPMEDYIKKGFVCIDKPMGPSSHEVVVWVRRILEVEKTG 74
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQG 122
H+GTLDP+ +G L + I++AT+LV Q + KEY+ + +LH V KM
Sbjct: 75 HTGTLDPRVTGVLPIMIEQATKLVHILQGSEKEYVCLMRLHGDVRREDIVRVMKMF---- 130
Query: 123 LLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRT 181
GK + P L++A K+ + I ++ + + +AGTY+R
Sbjct: 131 ----EGKIYQRPP------LKSAVKKRLRIREVKKIEILEIDGRDVLFKVTTEAGTYIRK 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
C +G VLG GA M ELRR R+GI +E+
Sbjct: 181 LCTDIGEVLGCGAHMQELRRTRTGIFTED 209
>gi|386001159|ref|YP_005919458.1| putative tRNA pseudouridine synthase B [Methanosaeta harundinacea
6Ac]
gi|357209215|gb|AET63835.1| putative tRNA pseudouridine synthase B [Methanosaeta harundinacea
6Ac]
Length = 332
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 120/212 (56%), Gaps = 13/212 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR T +G SP R + ++IR G +NLDKP P+SHEVVAW+KRIL E GHSGT
Sbjct: 15 VRREGRTDPRYGVSPEGRPLDQHIRLGCINLDKPPGPTSHEVVAWVKRILEIETAGHSGT 74
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +G L + +TR+V++ SAGKEY+ + +LH+ + +K++M + +
Sbjct: 75 LDPKVTGILPTMLGDSTRVVETLLSAGKEYVCLMRLHATL------PRKRVM--EVCSEF 126
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + ++ A + Y L ++ + + C+AGTY+R C +
Sbjct: 127 AGVIYQRPPLK--SSVKRALRTREIYYLEVL---EIEGPRVLFLVGCEAGTYIRKLCHDI 181
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
GL LG GA M ELRR RSG E++ LVT +
Sbjct: 182 GLALGSGAHMEELRRTRSGPFREDETLVTLHE 213
>gi|410721689|ref|ZP_11361019.1| rRNA pseudouridine synthase, putative [Methanobacterium sp.
Maddingley MBC34]
gi|410598435|gb|EKQ53008.1| rRNA pseudouridine synthase, putative [Methanobacterium sp.
Maddingley MBC34]
Length = 338
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+E++ G +NLDKPS P+SHE+ AW+KRIL CEKTGH GTLDP+ +G L
Sbjct: 34 YGCKPEERPIEEHLSRGIINLDKPSGPTSHEIDAWVKRILPCEKTGHGGTLDPRVTGVLP 93
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ ID ATR ++ A KEY+ + LH E+V + I+ L + GK + P
Sbjct: 94 IGIDTATRAIQLLLEAPKEYVCLMHLH---EDVGETR-----IRNILEEFTGKIFQTPPL 145
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ E + T N++ D + + C+AGTY+R YC +G LG GA M
Sbjct: 146 RSAVKREL---RVRTIYYVNILEIDG--QDALFKIGCEAGTYIRKYCHDIGEALGCGAHM 200
Query: 197 IELRRNRSGIQSEEDGLVTFRQ 218
ELRR R E++ L T +
Sbjct: 201 AELRRTRVADFKEDETLKTLQD 222
>gi|154284161|ref|XP_001542876.1| centromere/microtubule-binding protein cbf5 [Ajellomyces capsulatus
NAm1]
gi|150411056|gb|EDN06444.1| centromere/microtubule-binding protein cbf5 [Ajellomyces capsulatus
NAm1]
Length = 400
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 60 KTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMI 119
+TGHSGTLDPK +GCLIVCIDRATRLVKS AGKEY+ + +LH + + +
Sbjct: 7 ETGHSGTLDPKVTGCLIVCIDRATRLVKSYLGAGKEYVCVIRLHDKIPGGEAQFARALET 66
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
G L + +P + + T +S L D G+ W+ C+AGTY+
Sbjct: 67 LTGALFQ--RPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYI 117
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
RT CVH+GL+LGVGA M ELRR RSG E+DG+VT
Sbjct: 118 RTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTL 154
>gi|147919305|ref|YP_686959.1| putative tRNA pseudouridine synthase B [Methanocella arvoryzae
MRE50]
gi|110622355|emb|CAJ37633.1| putative tRNA pseudouridine synthase B [Methanocella arvoryzae
MRE50]
Length = 328
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+GK P RTI+E + G +NLDKPS P+SHEVV+W+K IL + GHSGTLDP +G L
Sbjct: 22 YGKDPQTRTIKELLDQGVINLDKPSGPTSHEVVSWVKNILEIRRAGHSGTLDPHVTGVLP 81
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH-GKPNENTP 135
+ ATRLV++ +GKEY + +LH V +KK+ + ++D+ G + P
Sbjct: 82 TMLGDATRLVQTLLLSGKEYACVMRLHDDV------PEKKL---RAVMDEFVGVIYQRPP 132
Query: 136 ASYLAELEAAPNKKPTYMKSNLISS--DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
++ ++ K+ Y L DV G C+AGTY+R C +G +G G
Sbjct: 133 --LVSAVKRQVRKRSIYYIEFLEQDGRDVLFIVG-----CEAGTYIRKLCHDIGEAIGCG 185
Query: 194 AQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
A M ELRR RSG +E+D L+T HM + + +
Sbjct: 186 AHMYELRRTRSGPFAEDDSLITL---HMLKDAYTIY 218
>gi|222445023|ref|ZP_03607538.1| hypothetical protein METSMIALI_00640 [Methanobrevibacter smithii
DSM 2375]
gi|261350408|ref|ZP_05975825.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2374]
gi|222434588|gb|EEE41753.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2375]
gi|288861191|gb|EFC93489.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2374]
Length = 320
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 114/211 (54%), Gaps = 13/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G +P +R I +YI G +NLDKPS P+SHE+ +W+KRIL EK+GH GTL
Sbjct: 7 KSKSFTNPEYGCAPEEREISDYISHGVINLDKPSGPTSHEIDSWVKRILNLEKSGHGGTL 66
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L V + ATR ++ +A KEY+ + H V+ + I++ +
Sbjct: 67 DPKVTGVLPVGLGDATRAIQLLLTAPKEYVCVMTFHHEVD--------EDKIREVFNEFT 118
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
GK + P + E + DV G C+AGTYVRTYC ++G
Sbjct: 119 GKIFQLPPVKSAVKRELRSRNVYYSTIYEINGRDVLFRIG-----CEAGTYVRTYCHNIG 173
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+GVGA M ELRR + G +E++ L T +
Sbjct: 174 EAIGVGAHMAELRRTQVGSFTEDNHLSTLQD 204
>gi|148642792|ref|YP_001273305.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
smithii ATCC 35061]
gi|148551809|gb|ABQ86937.1| tRNA pseudouridine synthase B, TruB [Methanobrevibacter smithii
ATCC 35061]
Length = 320
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 114/211 (54%), Gaps = 13/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G +P +R I +YI G +NLDKPS P+SHE+ +W+KRIL EK+GH GTL
Sbjct: 7 KSKSFTNPEYGCAPEEREISDYISHGVINLDKPSGPTSHEIDSWVKRILNLEKSGHGGTL 66
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L V + ATR ++ +A KEY+ + H V+ + I++ +
Sbjct: 67 DPKVTGVLPVGLGDATRAIQLLLTAPKEYVCVMTFHHEVD--------EDKIREVFNEFT 118
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
GK + P + E + DV G C+AGTYVRTYC ++G
Sbjct: 119 GKIFQLPPVKSAVKRELRSRNVYYSTIYEINGRDVLFRIG-----CEAGTYVRTYCHNIG 173
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+GVGA M ELRR + G +E++ L T +
Sbjct: 174 EAIGVGAHMAELRRTQVGSFTEDNHLSTLQD 204
>gi|297740386|emb|CBI30568.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 69/82 (84%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 61 NYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVEK 120
Query: 61 TGHSGTLDPKTSGCLIVCIDRA 82
TGHSGTLDPK +G LIV D A
Sbjct: 121 TGHSGTLDPKVTGNLIVLPDVA 142
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYL 139
+A+ KK +I +G L+KHGKPNENTP+ +L
Sbjct: 321 RAAMKKKLITEGKLNKHGKPNENTPSEWL 349
>gi|282164918|ref|YP_003357303.1| probable tRNA pseudouridine synthase B [Methanocella paludicola
SANAE]
gi|282157232|dbj|BAI62320.1| probable tRNA pseudouridine synthase B [Methanocella paludicola
SANAE]
Length = 332
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 17/207 (8%)
Query: 14 PLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSG 73
P +GK P R++ E + G +NLDKP P+SHEV AW+K IL ++ GHSGTLDP +G
Sbjct: 22 PKGYGKDPYTRSVAELLDKGVINLDKPYGPTSHEVTAWVKNILHIKRAGHSGTLDPHVTG 81
Query: 74 CLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNEN 133
L + ATRLV++ +GKEY+ + +LH+ V +K L + G +
Sbjct: 82 VLPTMLGDATRLVRTLLLSGKEYVCVMRLHADVPEAR--------VKAVLSEFTGVIYQR 133
Query: 134 TPASYLAELEAAPNKKPTYMKS--NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
P ++ ++ K+ Y + DV G C+AGTY+R C +G LG
Sbjct: 134 PP--LVSAVKRQLRKRTIYYIEFMEMDGRDVLFRVG-----CEAGTYIRKLCHDIGEALG 186
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTFRQ 218
VGA M ELRR +SG E++ L+T +
Sbjct: 187 VGAHMYELRRTKSGPFKEDETLITLQD 213
>gi|304314283|ref|YP_003849430.1| pseudouridine synthase B [Methanothermobacter marburgensis str.
Marburg]
gi|302587742|gb|ADL58117.1| predicted pseudouridine synthase B [Methanothermobacter
marburgensis str. Marburg]
Length = 322
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I G VNLDKPS P+SH+V AW++ +L EK GH GTLDPK +G L
Sbjct: 16 YGCPPHERDIETHISHGVVNLDKPSGPTSHQVDAWVRDMLHAEKVGHGGTLDPKVTGVLP 75
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ I+RATR+++ A KEY+ + ++H V+ + I++ L + GK + P
Sbjct: 76 LGINRATRVMQLLLEAPKEYVCLMRVHREVD--------EDRIREVLGEFQGKIFQIPPL 127
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ E + T N++ D + + C+AGTYVR YC +G LG GA M
Sbjct: 128 KSAVKREL---RVRTIYDVNILEIDG--QDVLFRIACEAGTYVRKYCHDVGEALGTGAHM 182
Query: 197 IELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
ELRR R G +EE GLVT H + WV
Sbjct: 183 AELRRTRVGPFTEE-GLVTL---HDLKDAYQFWV 212
>gi|118431292|ref|NP_147652.2| H/ACA RNA-protein complex component Cbf5p [Aeropyrum pernix K1]
gi|152031715|sp|Q9YDC3.2|TRUB_AERPE RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|109715686|dbj|BAE96920.1| Cbf5 [Aeropyrum pernix K1]
gi|116062614|dbj|BAA79974.2| small nucleolar RNP protein Cbf5 [Aeropyrum pernix K1]
Length = 354
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 13/215 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N ++ + + T +G P +R + Y+R G + +DKP P+SHEVVAWIKR+L +
Sbjct: 25 NTSRILYKYDEPTDPRYGYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSR 84
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
GH GTLDPK +G L V ++R TR++ + + KEY+ + +LH VE K+
Sbjct: 85 AGHGGTLDPKVTGVLPVALERMTRIIGTVMHSSKEYVCVMQLHRPVEEDRLREVLKLF-- 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G+ + P + ++ A + + L + T ++ + C+AGTY+R
Sbjct: 143 ------EGEIYQKPPLR--SSVKRALRTRRVFRIELL---EYTGKYALLRVDCEAGTYMR 191
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
C +GLVLGVGA M ELRR R+G SE+ GL+
Sbjct: 192 KLCWDIGLVLGVGAHMRELRRIRTGPFSEDSGLMV 226
>gi|125586407|gb|EAZ27071.1| hypothetical protein OsJ_11000 [Oryza sativa Japonica Group]
Length = 593
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 113/218 (51%), Gaps = 12/218 (5%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKP-SNPSSHEVVAWIKRILRCE 59
N+D+LNVRT HYTPLP P Q + A + NPSSHEVVA
Sbjct: 76 NYDRLNVRTGHYTPLPGRPLPAQAAHRRVPPATASSTSTSRGNPSSHEVVAPGSSASSAS 135
Query: 60 KTGH-SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM 118
+ +GTLDPK + RLVKSQQ AGKEY+ + + H+AV + A+ ++
Sbjct: 136 RRPATAGTLDPKVTRQPHRLRRPRHRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEA 195
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
+ + + P + L + T +S L+ D + W+ C+AGTY
Sbjct: 196 LTGAVFQR--PPLISAVKRQL--------RVRTIYESKLLEHDADRHLAVFWISCEAGTY 245
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
VRT CVH+GL+LGVGA M ELRR RSGI E D +VT
Sbjct: 246 VRTLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTM 283
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYL 139
A KKK M+ +GLLDKHGKPNE TP+ +L
Sbjct: 406 ALKKKKMVAEGLLDKHGKPNEKTPSEWL 433
>gi|383319781|ref|YP_005380622.1| tRNA pseudouridine synthase B [Methanocella conradii HZ254]
gi|379321151|gb|AFD00104.1| tRNA pseudouridine synthase B [Methanocella conradii HZ254]
Length = 329
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 17/202 (8%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+GK P +R+I E + G +NLDKP P+SHEV AW+K IL ++ GHSGTLDP +G L
Sbjct: 22 YGKDPYKRSIAELLDEGVINLDKPYGPTSHEVTAWVKNILHIKRAGHSGTLDPHVTGVLP 81
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + ATRLV+ +GKEY+ + +LH A + ++ L + G + P
Sbjct: 82 IMLGDATRLVRVLLLSGKEYVCVMRLH--------ADLPEERVRAILEEFTGVIYQRPP- 132
Query: 137 SYLAELEAAPNKKPTYMKS--NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGA 194
++ ++ K+ Y + DV G C+AGTY+R C +G LGVGA
Sbjct: 133 -LVSAVKRQLRKRTIYYIDFLEMRGRDVLFKVG-----CEAGTYIRKLCHDVGEALGVGA 186
Query: 195 QMIELRRNRSGIQSEEDGLVTF 216
M ELRR +SG E++ L+T
Sbjct: 187 HMYELRRTKSGPFKEDETLITL 208
>gi|15678063|ref|NP_275177.1| H/ACA RNA-protein complex component Cbf5p [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915180|sp|O26140.1|TRUB_METTH RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|2621069|gb|AAB84541.1| centromere/microtubule-binding protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 324
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I G VNLDKPS P+SH+V +W++ +L EK GH GTLDPK +G L
Sbjct: 21 YGCPPAERDIEAHISMGVVNLDKPSGPTSHQVDSWVRDMLHVEKVGHGGTLDPKVTGVLP 80
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ IDRATR+++ A KEY+ + ++H V+ + I++ L + GK + P
Sbjct: 81 LGIDRATRVMQLLLEAPKEYVCLMRVHREVD--------EERIREVLGEFQGKIFQIPPL 132
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ + + T + +++ D + + C+AGTYVR YC +G LG GA M
Sbjct: 133 KSAVKRDL---RVRTIYRVDILEVDG--QDVLFRIACEAGTYVRKYCHDVGEALGAGAHM 187
Query: 197 IELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
ELRR G +EE GLVT H + WV
Sbjct: 188 AELRRTAVGPFTEE-GLVTL---HDLKDAYQFWV 217
>gi|207343002|gb|EDZ70600.1| YLR175Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 387
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 20/154 (12%)
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 1 DPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL---------- 45
Query: 128 GKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
G+ EN + L +A ++ T +SNLI D + G+ W C+AGTY+RT
Sbjct: 46 GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTL 105
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 106 CVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 139
>gi|330508472|ref|YP_004384900.1| rRNA pseudouridine synthase [Methanosaeta concilii GP6]
gi|328929280|gb|AEB69082.1| rRNA pseudouridine synthase, putative [Methanosaeta concilii GP6]
Length = 308
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 106/193 (54%), Gaps = 19/193 (9%)
Query: 29 YIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKS 88
++R G +NLDK S P+SHEVVAW+KRIL EK GHSGTLDPK +G L V + ATR++ +
Sbjct: 2 HLRLGAINLDKTSGPTSHEVVAWVKRILEVEKAGHSGTLDPKVTGILPVLLGDATRVMDT 61
Query: 89 QQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK---PNENTPASYLAELEAA 145
AGKEYI + +H V K+ + D G+ P P + ++
Sbjct: 62 LLLAGKEYICLMHVHKPVP------------KKQITDVCGQFVGPILQKPPLKSSVVKEL 109
Query: 146 PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ Y++ I L + + C+AGTY+R C +GL LG GA M ELRR R+G
Sbjct: 110 RTRTIYYLEVLEIEGQHVL----MRVGCEAGTYIRKLCYDIGLALGTGANMEELRRTRAG 165
Query: 206 IQSEEDGLVTFRQ 218
E++ LVT Q
Sbjct: 166 PFREDETLVTLHQ 178
>gi|119874627|gb|ABM05790.1| dyskerin [Gordius aquaticus]
Length = 237
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 36/157 (22%)
Query: 73 GCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNE 132
GCLIVC++RATRLVKSQQ+AGKEY++I +LH+A+E+ E
Sbjct: 1 GCLIVCVERATRLVKSQQNAGKEYVAIVRLHAAIES-----------------------E 37
Query: 133 NTPASYLAELEAAPNKKP-------------TYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
T S L ++ A ++P T +S L+ D G+ W+ C+AGTY+
Sbjct: 38 KTLLSALEKMTGALFQRPPLISAVKRQLRIRTIYQSKLLEYDADRHLGVFWVSCEAGTYI 97
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
RT CVH+G VLGVG M ELRR RSGIQSE++ +VT
Sbjct: 98 RTLCVHLGFVLGVGGHMQELRRVRSGIQSEDEHMVTM 134
>gi|333987649|ref|YP_004520256.1| tRNA pseudouridine synthase B [Methanobacterium sp. SWAN-1]
gi|333825793|gb|AEG18455.1| tRNA pseudouridine synthase B [Methanobacterium sp. SWAN-1]
Length = 320
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
L +++ T +G +P +R I+++I G VNLDKP P+SHE+ +W+K+IL EKTGH
Sbjct: 4 LLIKSEGETDPEYGSTPEERLIRDHISMGVVNLDKPMGPTSHEIDSWVKKILHVEKTGHG 63
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDP+ +G L + I+++TR+++ A KEY+ + +LH ++ I+ L
Sbjct: 64 GTLDPRVTGVLPMGINQSTRVIQMLLGAPKEYVCLMRLHEMIDEAD--------IRDILQ 115
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+ GK + P + E + + DV G C+ GTY+R YC
Sbjct: 116 EFTGKIFQLPPLKSAVKRELRVRRIYYVNILEIEGQDVLFRIG-----CEGGTYIRKYCH 170
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+G LG GA M ELRR SG +++ T + H WV
Sbjct: 171 DIGEALGCGAHMAELRRTISGPFHDDE---TIKTLHDITDAYHAWV 213
>gi|119874603|gb|ABM05778.1| dyskerin [Arenicola marina]
Length = 241
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 99/145 (68%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI+RATRLVKSQQSAGKEY+ IFKLHSAVE+ K I Q + G
Sbjct: 1 TGCLIVCIERATRLVKSQQSAGKEYVCIFKLHSAVEDEKK-------IAQAITTLTGALF 53
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ P ++ ++ + Y +S +I D + GI+W+ C+AGTY+RT CVH+GL+LG
Sbjct: 54 QRPP--LISAVKRQLRVRTIY-ESKMIEYDQEKNLGILWVSCEAGTYIRTLCVHLGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VG QM ELRR RSGIQSE+DGL+T
Sbjct: 111 VGGQMQELRRVRSGIQSEKDGLMTM 135
>gi|119874621|gb|ABM05787.1| dyskerin [Sycon sp. SJB-2006]
Length = 233
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCIDRATRLVKSQQ AGKEY+ + +LHSAVE+ + ++ + L + P
Sbjct: 1 TGCLIVCIDRATRLVKSQQGAGKEYVCVVRLHSAVEDNTQLARTIEQLTGALFQR--PPL 58
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ L + T +S L G+ W+ C+AGTY+RT CVH+GL++G
Sbjct: 59 ISAVKRQL--------RVRTIYESKLFEFXQDRHLGVFWVSCEAGTYIRTLCVHIGLLMG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSGIQ+E +GLVT
Sbjct: 111 VGAHMQELRRVRSGIQNENEGLVTM 135
>gi|11497854|ref|NP_069076.1| H/ACA RNA-protein complex component Cbf5p [Archaeoglobus fulgidus
DSM 4304]
gi|3915164|sp|O30001.1|TRUB_ARCFU RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|2650403|gb|AAB90995.1| centromere/microtubule-binding protein (cbf5) [Archaeoglobus
fulgidus DSM 4304]
Length = 325
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 13/210 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ V+ + T +G P +R ++EYIR G V +DKP PSSHEVV W++RIL K
Sbjct: 2 KLENFYVKDDASTDESYGCYPTKRPMEEYIRKGLVCIDKPMGPSSHEVVVWVRRILNVSK 61
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDP+ +G L + I+ AT++VK Q + KEY+ + +LH AK + ++K
Sbjct: 62 TGHAGTLDPRVTGVLPIFIENATKMVKFLQESSKEYVCLMRLHGD----AKREDVEKVMK 117
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + +P + + + + M+ + V ++GTY+R
Sbjct: 118 LFVGRIYQRPPLKSAVKKVLRIREIYEMELLEMEGRDVLFRVV---------TESGTYIR 168
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
C +G VLG GA M ELRR R+G E+
Sbjct: 169 KLCRDIGEVLGTGAHMQELRRTRTGKFGED 198
>gi|347524226|ref|YP_004781796.1| rRNA pseudouridine synthase [Pyrolobus fumarii 1A]
gi|343461108|gb|AEM39544.1| rRNA pseudouridine synthase [Pyrolobus fumarii 1A]
Length = 376
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V+ T +G P R I+E+IR G V LDKP P+SHEVVAWIKR+ K GH GT
Sbjct: 28 VKAEEDTSPDYGTPPWARPIEEHIRKGVVPLDKPPGPTSHEVVAWIKRMFGLSKAGHGGT 87
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM--IKQGLL 124
LDPK +G L V ++ AT+++ KEYI + +LH VE KK++ IK
Sbjct: 88 LDPKVTGVLPVALEEATKIIGMVVHTPKEYICVMQLHEPVEE------KKLLEAIKVFTS 141
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+ +P + ++ + K Y L + T ++ + C GTY+R C
Sbjct: 142 TIYQRPPLRS------SVKRSLRTKTIYEIELL---EYTGRYALMRVLCDPGTYMRKLCH 192
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+GL LGVGA M ELRR +SG E GLV +
Sbjct: 193 DIGLYLGVGAHMRELRRTKSGPFREAYGLVKLQD 226
>gi|84489672|ref|YP_447904.1| H/ACA RNA-protein complex component Cbf5p [Methanosphaera
stadtmanae DSM 3091]
gi|84372991|gb|ABC57261.1| TruB [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 20/217 (9%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
K +V N+ +G P RTI+E+I G +N+DKPS P+SHEV W+K I+ +KTGH
Sbjct: 7 KCDVEVNY----DYGCHPRNRTIEEHINKGIINIDKPSGPTSHEVDVWLKDIMHVDKTGH 62
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V ++ AT+ + + KEY+ + +LH V+ S +
Sbjct: 63 GGTLDPKVTGVLPVALNTATKSLSLLLLSPKEYVCLMRLHKPVDEEDIIS---------I 113
Query: 124 LDKH-GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRT 181
LD+ GK + P + E + T + L+ ++ + +++ + CQ+GTY+R
Sbjct: 114 LDEFTGKIYQIPPVKSAVKREL---RVRTIYEVKLL--EIRDNQDVLFRITCQSGTYIRK 168
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
YC +G LG GA M ELRR +G E+D L T +
Sbjct: 169 YCHDIGEALGCGAHMAELRRTMAGSFLEDDTLTTLQD 205
>gi|156937715|ref|YP_001435511.1| rRNA pseudouridine synthase [Ignicoccus hospitalis KIN4/I]
gi|156566699|gb|ABU82104.1| putative rRNA pseudouridine synthase [Ignicoccus hospitalis KIN4/I]
Length = 349
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
K +R T +GK P +R ++E + G VNLDKP P+SHEVVAWIKR+ E+ GH
Sbjct: 20 KWVIREEAETDPKYGKEPWKRDVKELVELGVVNLDKPPGPTSHEVVAWIKRMFGLERAGH 79
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMI---- 119
GTLDPK +G L V + AT+++ +GKEY+ + + H AV+ K ++
Sbjct: 80 GGTLDPKVTGVLPVALAEATKVIHYVMLSGKEYVMVIQFHDAVKEEEVIENLKYLVGEIY 139
Query: 120 -KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
+ L + Y+ LE P ++ ++ + ++GTY
Sbjct: 140 QRPPLRSSVKRQLRTKKVYYIHVLEFWPERR----------------MALVRVGSESGTY 183
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+R +GL++G GA M ELRR RSG E+ LV +
Sbjct: 184 MRKLAHDLGLLVGTGAHMRELRRTRSGPFHEDWNLVRMQD 223
>gi|124028184|ref|YP_001013504.1| H/ACA RNA-protein complex component Cbf5p [Hyperthermus butylicus
DSM 5456]
gi|123978878|gb|ABM81159.1| predicted pseudouridine synthase [Hyperthermus butylicus DSM 5456]
Length = 345
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 13/212 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V+ T +G P R I+++IR G + LDKP P+SHEVVAWIKR+ K GH GT
Sbjct: 28 VKVEEDTSPDYGTPPWARPIEKHIRMGVIPLDKPPGPTSHEVVAWIKRMFGLSKAGHGGT 87
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +G L V ++ T+++ GKEY+ + +LH V M +
Sbjct: 88 LDPKVTGVLPVALEEGTKVIGLVVHTGKEYMCVMQLHRPVPEEELRRAINMFV------- 140
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G+ + P + ++ + K Y L + ++ + +AGTY+R C +
Sbjct: 141 -GEIYQRPPLR--SSVKRSLRLKKIYEIELL---EYNGRYALMRVFSEAGTYMRKLCHDI 194
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
GL+LGVGA M ELRR RSG E +GLV ++
Sbjct: 195 GLILGVGAHMRELRRTRSGPFRERNGLVRLQE 226
>gi|255564868|ref|XP_002523428.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223537378|gb|EEF39007.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 432
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 63/72 (87%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTPLP G SPL+R + EYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 38 NYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEK 97
Query: 61 TGHSGTLDPKTS 72
TGHSGTL+PK +
Sbjct: 98 TGHSGTLNPKVT 109
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
KAS KK +I +G LDKHGKPNENTP + L A P
Sbjct: 217 KASMKKKLIAEGKLDKHGKPNENTPQEWTRNLVALP 252
>gi|119874625|gb|ABM05789.1| dyskerin [Echiurus echiurus]
Length = 241
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 97/145 (66%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI+RATRLVKSQQSAGKEY+ +FKLHSAVEN K I G+ G
Sbjct: 1 TGCLIVCIERATRLVKSQQSAGKEYVCVFKLHSAVENERK-------IAAGIETLRGALF 53
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ P ++ ++ + Y +S +I D + G++W+ C+AGTY+RT CVH+GL+LG
Sbjct: 54 QRPP--LISAVKRQLRVRTIY-ESKMIEYDKERNLGVLWVSCEAGTYIRTLCVHLGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VG QM ELRR RSGIQSE D +VT
Sbjct: 111 VGGQMQELRRVRSGIQSETDRMVTM 135
>gi|119874633|gb|ABM05793.1| dyskerin [Phoronis vancouverensis]
Length = 241
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 99/145 (68%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI+RATRLVKSQQ AGKEY+ IF+LHSAV+++ + + QG+ G
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFRLHSAVDDLKR-------VAQGIETLTGALF 53
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ P ++ ++ + Y +S LI D + G+ W+ C+AGTY+RT CVH+GL+LG
Sbjct: 54 QRPP--LISAVKRQLRVRTVY-ESKLIEYDQERNMGVFWVSCEAGTYIRTMCVHLGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VG QM ELRR RSGIQSE++GLVT
Sbjct: 111 VGGQMQELRRVRSGIQSEKEGLVTM 135
>gi|294495990|ref|YP_003542483.1| tRNA pseudouridine synthase B [Methanohalophilus mahii DSM 5219]
gi|292666989|gb|ADE36838.1| tRNA pseudouridine synthase B [Methanohalophilus mahii DSM 5219]
Length = 342
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 121/210 (57%), Gaps = 14/210 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
++ + +T +G P +R + Y+R G VNLDKP+ P+SHEV AW++ +L + GHSG+
Sbjct: 22 LKGDAHTDPSYGCPPHKRPLSFYMRMGVVNLDKPAGPTSHEVTAWVRDMLELPRAGHSGS 81
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDP+ +G L + + +AT+ V + + + KEYI + +LH ENV + +K + D+
Sbjct: 82 LDPRVTGVLPIMLGKATKAVSALRLSAKEYICLMRLH---ENVPEERVRK------VCDE 132
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
P TP ++ ++ A + Y +L +V + + ++C+AGTY+R C +
Sbjct: 133 FTGPIYQTP-PVVSAVKRAVRIRNIY---SLDVLEVEDNLVLFRVRCEAGTYIRKLCHDI 188
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GLV+G GA M +LRR +G +E LVT
Sbjct: 189 GLVVGCGAHMQQLRRVGTG-PFDESSLVTL 217
>gi|300709166|ref|XP_002996750.1| hypothetical protein NCER_100126 [Nosema ceranae BRL01]
gi|239606073|gb|EEQ83079.1| hypothetical protein NCER_100126 [Nosema ceranae BRL01]
Length = 171
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 73/102 (71%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N D + ++ ++TP G P R + +Y++ G +++DK SNPSSHEVV WIK IL C+K
Sbjct: 14 NVDSMITKSTNFTPFGCGHLPYNRPLDQYLKYGIIHIDKSSNPSSHEVVTWIKNILECDK 73
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKL 102
TGH GTLDPK SG L +C++RATRL KSQQ+ GKEY+ + +
Sbjct: 74 TGHCGTLDPKVSGVLTICLNRATRLTKSQQTLGKEYVCVIEF 115
>gi|159040742|ref|YP_001539994.1| H/ACA RNA-protein complex component Cbf5p [Caldivirga
maquilingensis IC-167]
gi|157919577|gb|ABW01004.1| putative rRNA pseudouridine synthase [Caldivirga maquilingensis
IC-167]
Length = 335
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 21/221 (9%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
+ V+ + T +G +P +R I+EYI G++ LDKP P+S EVVAW+K++L K GHS
Sbjct: 13 IKVKVDEGTDPRYGVNPYERRIEEYINYGFIILDKPRGPTSSEVVAWVKKLLNISKAGHS 72
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDP SG L + + +T++++ + KEY+ + LHS V+ + +K
Sbjct: 73 GTLDPGVSGVLPIALGDSTKVLQGISNVDKEYVGVMLLHSTVD--------QERVKAVFR 124
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG---IIWLKCQAGTYVRT 181
+ GK + P L++A ++ + S D+ G + ++GTY+R
Sbjct: 125 EFTGKIYQRPP------LKSAVKRR--IRVKTVYSLDIMEFDGRYVLFKADVESGTYIRK 176
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEED--GLVTFRQEH 220
C +G VLGVGA M ELRR R G EE+ L T R+ +
Sbjct: 177 LCYDIGEVLGVGASMRELRRTRVGCFREENTVNLNTLREAY 217
>gi|374628862|ref|ZP_09701247.1| tRNA pseudouridine synthase B [Methanoplanus limicola DSM 2279]
gi|373906975|gb|EHQ35079.1| tRNA pseudouridine synthase B [Methanoplanus limicola DSM 2279]
Length = 313
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 26 IQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRL 85
I + I++G + +DKP PSSH+V AW+K IL EKTGH GTLDP SG L++ + R +L
Sbjct: 7 ISKKIKSGIIVIDKPQGPSSHQVTAWVKEILGGEKTGHGGTLDPMVSGLLVIMLGRTVKL 66
Query: 86 VKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAA 145
+ KEY+++ +LH K+ I++ + + GK + P A
Sbjct: 67 APVLLNHRKEYVALLRLH--------GDAKREEIERVVSEFKGKVYQRPPRK-----SAV 113
Query: 146 PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ ++ DV ++ + C+AGTY+R+ C+H+G LG G QM+ELRR +SG
Sbjct: 114 KRQLRIREMYDIEVLDVKDRLVLLRVDCEAGTYIRSLCIHIGFALGTGGQMVELRRTKSG 173
Query: 206 IQSEED 211
+E+D
Sbjct: 174 PFTEKD 179
>gi|261403018|ref|YP_003247242.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
vulcanius M7]
gi|261370011|gb|ACX72760.1| rRNA pseudouridine synthase [Methanocaldococcus vulcanius M7]
Length = 332
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR T +G P +R I+E I+ G V +DKP P+SHEV W+K+IL EK GH GT
Sbjct: 16 VREEAETSWDYGYDPYKRPIEELIKYGVVVIDKPRGPTSHEVSTWVKKILNLEKAGHGGT 75
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIKQGLL 124
LDPK +G L V ++RAT+ + KEY+ + LH ++ E++ K K+
Sbjct: 76 LDPKVTGVLPVALERATKTIPLWHIPPKEYVCLMHLHRDASEEDILKIFKEFT------- 128
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
GK + P L+AA ++ K +L D + +KCQ+GTY+R C
Sbjct: 129 ---GKIYQKPP------LKAAVKRRLRIRKIHDLELLDKDGRDVLFRVKCQSGTYIRKLC 179
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225
+G LG A M ELRR +SG E+D T+ Q+ + +I
Sbjct: 180 EDIGEALGTSAHMQELRRVKSGCFEEKD--TTYLQDLLDAYI 219
>gi|73667634|ref|YP_303649.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina barkeri
str. Fusaro]
gi|121722343|sp|Q46GC3.1|TRUB_METBF RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|72394796|gb|AAZ69069.1| tRNA pseudouridine synthase B [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G P +R I EYI G VN+DKP P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPSYGSYPEKRPILEYIEKGVVNIDKPKGPTSHEVAAWVKAILGVSTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT+ V + + +GKEY+ + KLH K +K++ K + ++
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCLLKLH-------KEMPQKLVRK--VCEEF 128
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
P P A + Y++ I L + C+AGTY+R C +G
Sbjct: 129 TGPIYQMPPIKSAVKRVIRIRTIYYLEVLEIEGSFVL----FRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M ELRR ++G +EE LVT +
Sbjct: 185 LALGCGGHMQELRRTKAGPFTEET-LVTLQD 214
>gi|380485605|emb|CCF39254.1| centromere/microtubule-binding protein cbf5 [Colletotrichum
higginsianum]
Length = 411
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 97/158 (61%), Gaps = 9/158 (5%)
Query: 59 EKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM 118
EKTGHSGTLDPK +GCLIVC+DRATRLVKSQQSAGKEY+++ +LH K K+
Sbjct: 43 EKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVAVIRLHD------KLPGGKVQ 96
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
+ L G + P + + + T +S LI D G+ W+ C+AGTY
Sbjct: 97 FARALETLTGALFQRPPLISAVKRQL---RIRTIHESKLIEFDNDRHLGVFWVSCEAGTY 153
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+RT CVH+GL+LGVG M ELRR RSG E G+VT
Sbjct: 154 IRTLCVHLGLLLGVGGHMQELRRVRSGAMDETKGMVTL 191
>gi|336477134|ref|YP_004616275.1| rRNA pseudouridine synthase [Methanosalsum zhilinae DSM 4017]
gi|335930515|gb|AEH61056.1| rRNA pseudouridine synthase [Methanosalsum zhilinae DSM 4017]
Length = 333
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 31/217 (14%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G SP R I E+I G +NL KP P+SHEV AW+K IL +K GHSG+LDP G L
Sbjct: 27 YGCSPHMRPIDEHINRGVINLLKPKGPTSHEVTAWVKDILHLKKAGHSGSLDPVVDGLLP 86
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVEN-----VAKASKKKMMIKQGLLDKHGKPN 131
+ + +AT+ +++ + +GKEY+ + +LHS+V V + ++ L+ +
Sbjct: 87 IMLGKATKTIRALRLSGKEYVCLMRLHSSVPEKKIIRVCSEFEGQIFQIPPLISAVKRAV 146
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
YL +E MK NL+ ++ + C+AGTY+R C +G LG
Sbjct: 147 RIRRIYYLEIIE---------MKDNLV---------LMRIGCEAGTYIRKLCHDIGEALG 188
Query: 192 VGAQMIELRRNRSGIQSEEDGLV--------TFRQEH 220
GA M ELRR ++G +E+ + TF +EH
Sbjct: 189 CGAHMQELRRTKTGPFNEDTAVTLHDVTDAYTFWKEH 225
>gi|432332028|ref|YP_007250171.1| rRNA pseudouridine synthase, putative [Methanoregula formicicum
SMSP]
gi|432138737|gb|AGB03664.1| rRNA pseudouridine synthase, putative [Methanoregula formicicum
SMSP]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 96/186 (51%), Gaps = 28/186 (15%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG + +DKP PSSHEV AW+ ++L C+ GHSGTLDP+ SG L++ + A RL
Sbjct: 18 RAGIIVIDKPRGPSSHEVAAWVGKMLGCQ-VGHSGTLDPQVSGVLLIMLGNAARLAPLLL 76
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KEYI + +LH V+ + +DK + + L P +K
Sbjct: 77 QHDKEYICLMRLHGDVD-------------RERIDKRAE-------EFTGRLYQRPPRKS 116
Query: 151 TYMKSNLISS-------DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNR 203
++ I DV + + C AGTY+R+ C HMG VLGVGA M+ELRR R
Sbjct: 117 AVKRNLRIREVHKLEILDVDGRLVLFRVHCDAGTYIRSLCHHMGFVLGVGAHMVELRRTR 176
Query: 204 SGIQSE 209
SG SE
Sbjct: 177 SGTFSE 182
>gi|297619799|ref|YP_003707904.1| rRNA pseudouridine synthase [Methanococcus voltae A3]
gi|297378776|gb|ADI36931.1| rRNA pseudouridine synthase [Methanococcus voltae A3]
Length = 336
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 14/214 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L ++ T FG +P R I+ + G V ++KPS P+SHEV AW++ IL+ K GH
Sbjct: 6 ELLIKEESKTNYEFGTNPYNRDIKSLLETGIVIINKPSGPTSHEVSAWVRDILKVSKAGH 65
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L + + +T+ V KEY+ I +LH ++ +K +K+++ L
Sbjct: 66 GGTLDPKVTGALPIALGNSTKCVPYWHIPPKEYVCIMRLHRDMKE-SKIGEKEIL---EL 121
Query: 124 LDKH-GKPNENTPASYLAELEAAPNKKPTYMKS---NLISSDVTLSTGIIWLKCQAGTYV 179
D GK + P L+A+ +K K LI + +++ + W++CQ+GTY+
Sbjct: 122 FDNFIGKMYQRPP------LKASVARKLRVRKIYELKLIEINEEINSVLFWVRCQSGTYL 175
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R G LGV A M ELRR +SG EE+ +
Sbjct: 176 RKLVDDFGEALGVSAHMQELRRVKSGPFFEEEAI 209
>gi|435852111|ref|YP_007313697.1| rRNA pseudouridine synthase, putative [Methanomethylovorans
hollandica DSM 15978]
gi|433662741|gb|AGB50167.1| rRNA pseudouridine synthase, putative [Methanomethylovorans
hollandica DSM 15978]
Length = 339
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 22/215 (10%)
Query: 13 TPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTS 72
T + +G SP R+I +++ G VNL+KPS P+SHEV AW+K IL EK GHSG+LDP +
Sbjct: 25 TDVIYGCSPYMRSIDKHLLMGVVNLNKPSGPTSHEVTAWVKSILEIEKAGHSGSLDPGVT 84
Query: 73 GCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNE 132
G L + + +AT+ V + + +GKEYI + +LH + K KK + + P
Sbjct: 85 GLLPLMLGKATKTVSALRLSGKEYICLMRLHDTLPE--KVVKK-------VCAEFNGPIY 135
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
P A + + Y+ I + L + + C+AGTY+R C +GL LG
Sbjct: 136 QMPPVISAVKRSIRVRNIYYLDVLEIDGPMVL----MKVGCEAGTYIRKLCHDIGLALGC 191
Query: 193 GAQMIELRRNRSG---------IQSEEDGLVTFRQ 218
GA M +L R R+G +Q +D V +++
Sbjct: 192 GANMQQLIRTRTGPFTGDTAVTLQELKDAFVLWKE 226
>gi|296109351|ref|YP_003616300.1| rRNA pseudouridine synthase [methanocaldococcus infernus ME]
gi|295434165|gb|ADG13336.1| rRNA pseudouridine synthase [Methanocaldococcus infernus ME]
Length = 320
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 15/208 (7%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
L VR T +G P +R I++ I+ G V +DKP P+SHEV +W+++IL K+GH
Sbjct: 2 LVVREEAETDEKYGSYPEKRKIEDLIKYGIVVIDKPRGPTSHEVSSWVRKILNINKSGHG 61
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL 124
GTLDPK +G L V ++RA R + KEY+ + LH ++ K + + K+
Sbjct: 62 GTLDPKVTGVLPVALERAVRTIDLWHIPPKEYVCLMHLHRDIDE----DKVREIFKEFT- 116
Query: 125 DKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTYC 183
GK + P L++A K+ K + + +++ +KCQ+GTY+R C
Sbjct: 117 ---GKIYQRPP------LKSAVKKRVRIRKIHELELLEKDGKDVLFRVKCQSGTYIRKLC 167
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEED 211
+G LGV A M ELRR +SG E+D
Sbjct: 168 EDIGEALGVSAHMQELRRTKSGNFEEKD 195
>gi|289191620|ref|YP_003457561.1| rRNA pseudouridine synthase [Methanocaldococcus sp. FS406-22]
gi|288938070|gb|ADC68825.1| rRNA pseudouridine synthase [Methanocaldococcus sp. FS406-22]
Length = 336
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 19/214 (8%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++L V+ T +G +P +R I++ I+ G V +DKP P+SHEV W+K+IL+ +K G
Sbjct: 16 EELIVKEKAETNWDYGCNPYERKIEDLIKYGVVVIDKPRGPTSHEVSTWVKKILKLDKAG 75
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIK 120
H GTLDPK +G L V ++RAT+ + KEYI + LH ++ E++ + K+
Sbjct: 76 HGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYICLMHLHRDASEEDILRVFKEFT--- 132
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYV 179
G+ + P L+AA ++ K L D + +KCQ+GTY+
Sbjct: 133 -------GRIYQRPP------LKAAVKRRLRIRKIHELELLDKEGKDVLFRVKCQSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R C +G LG A M ELRR +SG E+D +
Sbjct: 180 RKLCEDLGEALGTSAHMQELRRVKSGCFEEKDAV 213
>gi|256810175|ref|YP_003127544.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
fervens AG86]
gi|256793375|gb|ACV24044.1| rRNA pseudouridine synthase [Methanocaldococcus fervens AG86]
Length = 328
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++L V+ T +G +P +R I++ I+ G V +DKP P+SHEV +W+K+IL +K G
Sbjct: 8 EELIVKEEAETNWDYGCNPYERKIEDLIKYGVVVIDKPRGPTSHEVSSWVKKILNLDKAG 67
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIK 120
H GTLDPK +G L V ++RAT+ + KEYI + LH ++ E++ + K
Sbjct: 68 HGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYICLMHLHRDASEEDILRIFK------ 121
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYV 179
+ G+ + P L+AA ++ K L D+ + +KCQ+GTY+
Sbjct: 122 ----EFTGRIYQRPP------LKAAVKRRLRIRKIYELELLDLEGRDVLFRVKCQSGTYI 171
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R C +G LG A M ELRR +SG E+D +
Sbjct: 172 RKLCEDIGEALGTSAHMQELRRVKSGCFEEKDAV 205
>gi|119874615|gb|ABM05784.1| dyskerin [Leptochiton sp. SJB-2006]
Length = 241
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI+RATRLVKSQQ AGKEY+ IFKLHS V K++ ++KQ L G
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFKLHSQV-------KEERIVKQNLESLTGALF 53
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ P ++ ++ + Y + ++ D + GI W+ C+AGTY+RT CVH+GL+LG
Sbjct: 54 QRPP--LISAVKRQLRIRTVY-ECKMLEYDQEKAMGIFWVSCEAGTYIRTMCVHLGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VG QM ELRR RSGIQSE++G VT
Sbjct: 111 VGGQMQELRRVRSGIQSEKEGCVTM 135
>gi|410670324|ref|YP_006922695.1| H/ACA RNA-protein complex component Cbf5p [Methanolobus
psychrophilus R15]
gi|409169452|gb|AFV23327.1| H/ACA RNA-protein complex component Cbf5p [Methanolobus
psychrophilus R15]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 14/215 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L RT T +G P +R I+EY+ G VNLDK P+SHEV AW+K IL + GH
Sbjct: 24 ELVQRTQATTNPSYGCLPAERPIREYVEMGVVNLDKLQGPTSHEVTAWVKDILELRRAGH 83
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SG+LDP +G + + RAT++V + + +GKEYI +LH A +KK+ + +
Sbjct: 84 SGSLDPGVTGVQPIMLGRATKVVSALRLSGKEYICHMRLHEP------APEKKV---RTV 134
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
++ P P + A + M L +V + ++ + C+AGTY+R C
Sbjct: 135 CEEFVGPLFQMPPV----ISAVKRELRVRMIYYLEVLEVKDKSVLMRVGCEAGTYMRKLC 190
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G+ LG GA M +LRR ++G ED LV +
Sbjct: 191 HDIGMALGTGAHMQQLRRTKTG-PFREDTLVNLHE 224
>gi|83754023|pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 19/214 (8%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++L V+ T +G +P +R I++ I+ G V +DKP P+SHEV W+K+IL +K G
Sbjct: 37 EELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAG 96
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIK 120
H GTLDPK +G L V ++RAT+ + KEY+ + LH ++ E++ + K+
Sbjct: 97 HGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEEDILRVFKEFT--- 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYV 179
G+ + P L+AA ++ K L D + +KCQ+GTY+
Sbjct: 154 -------GRIYQRPP------LKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYI 200
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R C +G LG A M ELRR +SG E+D +
Sbjct: 201 RKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAV 234
>gi|15668320|ref|NP_247116.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
jannaschii DSM 2661]
gi|3915195|sp|Q57612.1|TRUB_METJA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|1590909|gb|AAB98132.1| centromere/microtubule-binding protein (cbf5) [Methanocaldococcus
jannaschii DSM 2661]
Length = 336
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 19/214 (8%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++L V+ T +G +P +R I++ I+ G V +DKP P+SHEV W+K+IL +K G
Sbjct: 16 EELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAG 75
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIK 120
H GTLDPK +G L V ++RAT+ + KEY+ + LH ++ E++ + K+
Sbjct: 76 HGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEEDILRVFKEFT--- 132
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYV 179
G+ + P L+AA ++ K L D + +KCQ+GTY+
Sbjct: 133 -------GRIYQRPP------LKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R C +G LG A M ELRR +SG E+D +
Sbjct: 180 RKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAV 213
>gi|119874629|gb|ABM05791.1| dyskerin [Limulus polyphemus]
Length = 233
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 94/145 (64%), Gaps = 10/145 (6%)
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN 131
+GCLIVCI+RATRLVKSQQ AGKEY+ IF+LHSA EN + K +GL +G
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFRLHSAPENQQQVVK----CLEGL---NGALF 53
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
+ P L + T ++ L+ D GI W+ C+AGTY+RT CVH+GL+LG
Sbjct: 54 QRPP---LISAVKRQLRVRTIYETKLLEYDQEKHMGIFWVSCEAGTYIRTLCVHLGLLLG 110
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VG QM ELRR RSGIQSE++GLVT
Sbjct: 111 VGGQMQELRRVRSGIQSEKEGLVTM 135
>gi|119874623|gb|ABM05788.1| dyskerin [Archispirostreptus gigas]
Length = 233
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 88/137 (64%), Gaps = 10/137 (7%)
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
DRATRLVKSQQSAGKEY+ I KLH AVE S+K++ + L G + P +
Sbjct: 1 DRATRLVKSQQSAGKEYVCILKLHEAVE-----SEKQIALALETLT--GAQFQRPP--LI 51
Query: 140 AELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIEL 199
+ ++ + Y +S L+ + + I W+KC+AGTY+RT CVH+GLVLGVG +M EL
Sbjct: 52 SAVKRQLRIRTIY-ESKLLEYNSEQNMVIFWVKCEAGTYIRTLCVHLGLVLGVGGKMQEL 110
Query: 200 RRNRSGIQSEEDGLVTF 216
RR RSGIQSE D LVT
Sbjct: 111 RRVRSGIQSEHDNLVTM 127
>gi|333911253|ref|YP_004484986.1| tRNA pseudouridine synthase B [Methanotorris igneus Kol 5]
gi|333751842|gb|AEF96921.1| tRNA pseudouridine synthase B [Methanotorris igneus Kol 5]
Length = 338
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 108/198 (54%), Gaps = 15/198 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G +P +R I++ +++G V +DKPS P+SHEV W+K+IL +K GH GTLDPK +G L
Sbjct: 32 YGCNPYERKIEDLLKSGVVVIDKPSGPTSHEVSTWVKKILNLKKAGHGGTLDPKVTGVLP 91
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ ++ AT+ + KEYI + LH A ++K I++ + GK + P
Sbjct: 92 IALENATKCIPMWHIPPKEYICLMHLHR------DADEEK--IREIFKEFEGKILQRPP- 142
Query: 137 SYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQ 195
L+AA + K + + D+ + +KCQ+GTY+R MG LG A
Sbjct: 143 -----LKAAVKRSLRIRKIHKLEILDIDGRDILFRVKCQSGTYIRKLVDDMGEALGTSAH 197
Query: 196 MIELRRNRSGIQSEEDGL 213
M ELRR +SG+ E D +
Sbjct: 198 MQELRRVKSGVFEENDAV 215
>gi|227827978|ref|YP_002829758.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.14.25]
gi|229579607|ref|YP_002838006.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
Y.G.57.14]
gi|229581728|ref|YP_002840127.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
Y.N.15.51]
gi|229585245|ref|YP_002843747.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.16.27]
gi|227459774|gb|ACP38460.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.14.25]
gi|228010322|gb|ACP46084.1| rRNA pseudouridine synthase [Sulfolobus islandicus Y.G.57.14]
gi|228012444|gb|ACP48205.1| rRNA pseudouridine synthase [Sulfolobus islandicus Y.N.15.51]
gi|228020295|gb|ACP55702.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.16.27]
Length = 339
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 13/210 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
+R + T +G P +R I +I+ +NLDKP P+SHEV WIK++L K GH GT
Sbjct: 22 IRKDSETSDTYGYYPEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGT 81
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
L+PK +G L + I+ AT+++ GKEY+ + ++H + + +IK +
Sbjct: 82 LEPKVTGVLPIGIENATKIMNYISKGGKEYVCVMQVHCEYDK----EELTKIIKSFEGEI 137
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ +P + + + + + M L+ + + C +GTY+R C +
Sbjct: 138 YQRPPVRSSVKRRLRVRSIYDIEILDMDKKLV---------LFRVSCDSGTYMRKLCHDI 188
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++ G GA M ELRR RSGI +E LV
Sbjct: 189 GIIYGCGAHMRELRRTRSGIFTESTNLVKL 218
>gi|242072544|ref|XP_002446208.1| hypothetical protein SORBIDRAFT_06g004121 [Sorghum bicolor]
gi|241937391|gb|EES10536.1| hypothetical protein SORBIDRAFT_06g004121 [Sorghum bicolor]
Length = 96
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 3/86 (3%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+R G +NLDKPSN S+H+VVAWIKRILR EKTGHSGT DPK +G LIV +DR TRL+K Q
Sbjct: 2 LRYGVINLDKPSNSSTHKVVAWIKRILRAEKTGHSGTFDPKVTGNLIVYVDRTTRLIKLQ 61
Query: 90 QSAGKEYISIFKLHSAV---ENVAKA 112
Q AGKEY+ + + H+ V E VA+A
Sbjct: 62 QGAGKEYVCVARFHAVVPDTERVARA 87
>gi|167043025|gb|ABZ07737.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine microorganism HF4000_ANIW141A21]
Length = 338
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 29/216 (13%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P R +++ + G + DKPS P+SHEVVAW++ +L K GHSGTLDP +G L
Sbjct: 19 YGSDPHSRKMKDLLDYGLICADKPSGPTSHEVVAWVRLMLNIGKAGHSGTLDPMVTGLLP 78
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + T+ + + KEYI+I +LHS V++ A K
Sbjct: 79 IGLGHGTKALTTLLLGPKEYIAIARLHSPVDDPKLARIMK-------------------- 118
Query: 137 SYLAELEAAPNKKPTYMKS----NLISSDVTLSTG---IIWLKCQAGTYVRTYCVHMGLV 189
+ E+ P ++ ++ + + D+ G I + CQAGTYVR MG +
Sbjct: 119 EFTGEIYQTPPQRSAVKRARRTRTIYALDLVERQGNLLIFRILCQAGTYVRKLVYDMGEI 178
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225
LG GA MIELRR R ++E GLV R +F+ +
Sbjct: 179 LGPGATMIELRRTRVSNLNDEKGLV--RLHDLFDAV 212
>gi|379005362|ref|YP_005261034.1| rRNA pseudouridine synthase, putative [Pyrobaculum oguniense TE7]
gi|375160815|gb|AFA40427.1| rRNA pseudouridine synthase, putative [Pyrobaculum oguniense TE7]
Length = 331
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+GK P QRT EYIR +V LDKP PSSHEV AW+K+IL E+ GH+GTLDPK SG L
Sbjct: 20 WGKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLP 79
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + T+++ + + K Y+++ K H V+ + + ++++ + + KP +
Sbjct: 80 IAVAEGTKVLMALSRSDKVYVAVAKFHGDVDE----ERLRAVLREFQGEIYQKPPLRS-- 133
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
A + T +L ++ +I + +AGTY R +G VLGVGA M
Sbjct: 134 -------AVKRQLRTRRVFSLELLELEGRYAVIKMHVEAGTYARKIIHDIGEVLGVGANM 186
Query: 197 IELRR 201
ELRR
Sbjct: 187 RELRR 191
>gi|145590354|ref|YP_001152356.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum arsenaticum
DSM 13514]
gi|189036564|sp|A4WH37.1|TRUB_PYRAR RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|145282122|gb|ABP49704.1| tRNA pseudouridine synthase B [Pyrobaculum arsenaticum DSM 13514]
Length = 331
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+GK P QRT EYIR +V LDKP PSSHEV AW+K+IL E+ GH+GTLDPK SG L
Sbjct: 20 WGKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLP 79
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + T+++ + + K Y+++ K H V+ + + ++++ + + KP +
Sbjct: 80 IAVAEGTKVLMALSRSDKVYVAVAKFHGDVDE----ERLRAVLREFQGEIYQKPPLRS-- 133
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
A + T +L ++ +I + +AGTY R +G VLGVGA M
Sbjct: 134 -------AVKRQLRTRRVFSLELLELEGRYAVIKMHVEAGTYARKIIHDIGEVLGVGANM 186
Query: 197 IELRR 201
ELRR
Sbjct: 187 RELRR 191
>gi|20089974|ref|NP_616049.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina
acetivorans C2A]
gi|37089065|sp|Q8TRR5.1|TRUB_METAC RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|19914936|gb|AAM04529.1| rRNA pseudouridine synthase [Methanosarcina acetivorans C2A]
Length = 338
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G +P +R I EYI G VN+DKPS P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPVYGCAPEKRPILEYIEKGVVNIDKPSGPTSHEVAAWVKAILGVNTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT+ V + + +GKEY+ KLH +A K++ K + ++
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCHLKLH-------RAMPPKLVRK--VCEEF 128
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
P P A + Y++ I L + C+AGTY+R C +G
Sbjct: 129 TGPIYQMPPIKSAVKRVIRVRTIYYIEVLEIEGMSVL----FRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M LRR ++G +E+ LVT +
Sbjct: 185 LALGCGGHMQALRRTKAGPFTEKT-LVTLHE 214
>gi|149047807|gb|EDM00423.1| rCG37748 [Rattus norvegicus]
Length = 107
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 9/101 (8%)
Query: 23 QRTIQEYIRA---------GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSG 73
QRTI ++ A G++NLDKPSNPSS +VVAWI++ILR EKTG+SGTLD K +G
Sbjct: 4 QRTIHLFLVAQILCTGRATGFLNLDKPSNPSSCDVVAWIQQILRVEKTGYSGTLDSKETG 63
Query: 74 CLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASK 114
CLIVCI+RA RL+KSQ AGK Y+ I LH A+E + S+
Sbjct: 64 CLIVCIERAIRLLKSQHRAGKVYVGIVWLHKAIEEGTQLSR 104
>gi|452210691|ref|YP_007490805.1| tRNA pseudouridine 55 synthase [Methanosarcina mazei Tuc01]
gi|452100593|gb|AGF97533.1| tRNA pseudouridine 55 synthase [Methanosarcina mazei Tuc01]
Length = 338
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G P +R I EYI G VN+DKP P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT V + + +GKEYI KLH A+ + +++Q + ++
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAM--------PQKLVRQ-VCEEF 128
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
P P A + Y++ I L + C+AGTY+R C +G
Sbjct: 129 TGPIYQMPPIKSAVKRVIRVRTIYYLEVLEIEGTSVL----FRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M LRR ++G +E+ L+T +
Sbjct: 185 LALGCGGHMQGLRRTKAGPFTEKT-LITLHE 214
>gi|218884458|ref|YP_002428840.1| H/ACA RNA-protein complex component Cbf5p [Desulfurococcus
kamchatkensis 1221n]
gi|218766074|gb|ACL11473.1| tRNA pseudouridine synthase [Desulfurococcus kamchatkensis 1221n]
Length = 345
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 18 GKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIV 77
G P +R + ++I G +NLDKP P+SHEVVAW+K++ EK GH GTLDPK +G L +
Sbjct: 37 GVLPYERKVNDHINYGVINLDKPPGPTSHEVVAWVKKMFNLEKAGHGGTLDPKVTGVLPI 96
Query: 78 CIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPAS 137
+ +T+++ + + KEY+ + +LH A+ S KM+++ D + KP +
Sbjct: 97 GLANSTKVIGNVIHSVKEYVMVIQLHGD----ARESSVKMVVEYFKGDIYQKPPLRSSVK 152
Query: 138 YLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMI 197
+ + ++ I ++ + GTY+R +GL+LG GA M
Sbjct: 153 RSIRVRRIYEIELLEIRDRFI---------LVRVLSDPGTYMRKLAHDIGLMLGTGAHMR 203
Query: 198 ELRRNRSGIQSEEDGLVTFRQ 218
ELRR R+G E++ LV +
Sbjct: 204 ELRRTRTGPYREDETLVRLQD 224
>gi|119719378|ref|YP_919873.1| putative rRNA pseudouridine synthase [Thermofilum pendens Hrk 5]
gi|119524498|gb|ABL77870.1| putative rRNA pseudouridine synthase [Thermofilum pendens Hrk 5]
Length = 338
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
++ VR+ T +G P +R + ++ +NLDKP PSSHEVVAW++++L E+ H
Sbjct: 13 EIYVRSEDETDFSYGWLPEERPPEVLLKYSVINLDKPVGPSSHEVVAWLRKLLGIERIAH 72
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK SG L + ++ A R++ KEY+ + +LH V+ + + M K
Sbjct: 73 AGTLDPKVSGVLPITLNNAVRVLPVLLKEDKEYVCVMRLHGDVDP-ERLERVVSMFK--- 128
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
G+ + P + E + Y ++ + T ++ + C+AGTY+R C
Sbjct: 129 ----GRIYQRPPLRSAVKREV--RIRQIY---DIRLLEFNERTALLHVWCEAGTYMRKLC 179
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEE 210
+G +LGVGA M ELRR RSG E+
Sbjct: 180 HDIGEILGVGAHMQELRRIRSGSLYED 206
>gi|91772110|ref|YP_564802.1| H/ACA RNA-protein complex component Cbf5p [Methanococcoides
burtonii DSM 6242]
gi|91711125|gb|ABE51052.1| tRNA pseudouridine synthase B [Methanococcoides burtonii DSM 6242]
Length = 331
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 20/203 (9%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P R I EYI G VN+DK P+SHEV AW++ +L +K GHSG+LDP +G L
Sbjct: 26 YGCLPQDRPILEYINMGVVNIDKAIGPTSHEVTAWVRDMLGVKKAGHSGSLDPHVTGLLP 85
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVEN--VAKASKKKMMIKQGLLDKHGKPNENT 134
V + RAT+ V + + +GKEYI + LH + + + KA K + P T
Sbjct: 86 VMLGRATKAVSALRLSGKEYICVMHLHDDIPDRKIRKACK-----------EFTGPIYQT 134
Query: 135 PASYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
P A + Y+ I +V + G C+AGTY+R C +GLVLG G
Sbjct: 135 PPIISAVKRQLRIRNIYYLDVLEIEGREVLMRVG-----CEAGTYLRKLCHDIGLVLGCG 189
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
M +LRR +G ED LV+
Sbjct: 190 GHMKQLRRTGTG-PFREDTLVSL 211
>gi|21228256|ref|NP_634178.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina mazei
Go1]
gi|37089030|sp|Q8PV20.1|TRUB_METMA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|20906713|gb|AAM31850.1| tRNA pseudouridine synthase [Methanosarcina mazei Go1]
Length = 338
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G P +R I EYI G VN+DKP P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT V + + +GKEYI KLH A+ + +++Q +
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAM--------PQKLVRQVCEEFT 129
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
G + P + ++ + Y +L ++ ++ + + C+AGTY+R C +G
Sbjct: 130 GPIYQMPPIK--SAVKRVIRVRTIY---HLEVLEIEGTSVLFRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M LRR ++G +E+ L+T +
Sbjct: 185 LALGCGGHMQGLRRTKAGPFTEKT-LITLHE 214
>gi|345005964|ref|YP_004808817.1| tRNA pseudouridine synthase B [halophilic archaeon DL31]
gi|344321590|gb|AEN06444.1| tRNA pseudouridine synthase B [halophilic archaeon DL31]
Length = 300
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 23/219 (10%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCL 75
P P +R++++ +R G VNLDKP+ PS+H+V AW++ + E+ H+GTLDPK +GCL
Sbjct: 6 PLRAPPGERSVEDLLRFGVVNLDKPAGPSAHQVAAWVRDLANLERAAHAGTLDPKVTGCL 65
Query: 76 IVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTP 135
+ ATRL KEYI++ +LH +A+ I + D + KP +
Sbjct: 66 PSLLGDATRLAPVFLEGAKEYIAVLELHGLPPTDVEAT-----IAEFETDLYQKPPRKS- 119
Query: 136 ASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQ 195
A + + +L ++ ++ ++C++GTY+R C +G+ LG G
Sbjct: 120 --------AVTRRLRSREIYDLEVLELEERQALLHIRCESGTYIRKLCHDLGMALGTGGH 171
Query: 196 MIELRRNRSG---------IQSEEDGLVTFRQEHMFEHI 225
M LRR + +Q DGL R++ E++
Sbjct: 172 MGALRRVATDPFDDTDLVTLQDLADGLAWAREDGYEEYL 210
>gi|298674775|ref|YP_003726525.1| rRNA pseudouridine synthase [Methanohalobium evestigatum Z-7303]
gi|298287763|gb|ADI73729.1| rRNA pseudouridine synthase [Methanohalobium evestigatum Z-7303]
Length = 340
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 23/205 (11%)
Query: 12 YTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKT 71
+T +G P R I ++I G VNLDKP P+SHE+ +W+K IL K GHSG+LDPK
Sbjct: 28 FTNPNYGCPPENRPIYDHINMGVVNLDKPKGPTSHEITSWVKDILNINKAGHSGSLDPKV 87
Query: 72 SGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDK 126
+G L + + +AT+ + S + + KEY+ + +LH V V K + + K +
Sbjct: 88 TGVLPIMLQKATKAIGSLRLSNKEYVCLMQLHDTVTADEIIRVCKEFEGPIFQKPPIKSA 147
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ YL LE + S V L G C+AGTY+R C +
Sbjct: 148 VKRKLRIRTIDYLNILE-------------IKGSSVLLKVG-----CEAGTYLRKLCTDI 189
Query: 187 GLVLGVGAQMIELRRNRSGIQSEED 211
G +G GA M EL+R ++G E++
Sbjct: 190 GEAIGCGAHMQELKRTKTGPFCEDN 214
>gi|448738520|ref|ZP_21720543.1| H/ACA RNA-protein complex component Cbf5p [Halococcus thailandensis
JCM 13552]
gi|445801404|gb|EMA51738.1| H/ACA RNA-protein complex component Cbf5p [Halococcus thailandensis
JCM 13552]
Length = 290
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 30/190 (15%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCI 79
+P RT +E + G VNLDKP PS+H+V W++ ++ ++ H+GTLDPK +GCL + +
Sbjct: 4 APADRTAEERLSFGVVNLDKPPGPSAHQVTGWVRDLVGTDRAAHAGTLDPKVTGCLPILL 63
Query: 80 DRATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNENTPASY 138
ATRL + KEYI++ +LH A E++ ++ A +
Sbjct: 64 GDATRLAQVFLEGEKEYIAVLELHGRAPESL----------------------DDVLAEF 101
Query: 139 LAELEAAPNKKPTYMK-------SNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
E+ P KK + S L + +V ++ ++C++GTYVR C +G LG
Sbjct: 102 EGEIYQKPPKKSAVARRLRTRRVSELTALEVEDRRALLRIRCESGTYVRKLCHDLGRALG 161
Query: 192 VGAQMIELRR 201
GA M +LRR
Sbjct: 162 TGAHMGDLRR 171
>gi|307595999|ref|YP_003902316.1| rRNA pseudouridine synthase [Vulcanisaeta distributa DSM 14429]
gi|307551200|gb|ADN51265.1| rRNA pseudouridine synthase [Vulcanisaeta distributa DSM 14429]
Length = 351
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 33/235 (14%)
Query: 10 NHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDP 69
N T +G P +R + Y++ G+V +DKP P+SHEV AW+K++L ++ GHSGTLDP
Sbjct: 21 NEQTNPEWGIPPEKRPMDLYLKYGFVIIDKPRGPTSHEVAAWVKKMLNLDRAGHSGTLDP 80
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
+ SG L + + +T+ + + + KEYI + KLH V++ K + ++++ + +
Sbjct: 81 RVSGVLPIALGESTKAMPAINTLDKEYIMVMKLHGDVDD----EKLRAVLREFTGAIYQR 136
Query: 130 P------NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
P ++ ELE L+ D +I + ++GTY R
Sbjct: 137 PPLRSAVKRQLRVKHVYELE-------------LLERDGKYV--LIRMNVESGTYARKLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLV--------TFRQEHMFEHIVSTWV 230
+G VLG+GA M ELRR R G +E++ + T +++ E ++ T+V
Sbjct: 182 YDIGEVLGIGANMRELRRTRVGCFTEKEAVTLQDLKDAYTLYKDYGVEDLLRTYV 236
>gi|402467120|gb|EJW02475.1| hypothetical protein EDEG_00278 [Edhazardia aedis USNM 41457]
Length = 481
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 71/101 (70%), Gaps = 4/101 (3%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIK----RIL 56
+ DK++V+T H+TPL G PL+R + E+++ G V +DK PSSHE+V W+K I
Sbjct: 16 DIDKMHVKTLHHTPLKTGFEPLKRPLLEHLKYGVVFIDKVKGPSSHEIVTWVKDMVKEIF 75
Query: 57 RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYI 97
C+KTGH GTLDP+ SGCL + I+RATRL K QS GKEYI
Sbjct: 76 DCKKTGHCGTLDPQVSGCLPILIERATRLAKIGQSEGKEYI 116
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 34/45 (75%)
Query: 167 GIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
+I + C+AGTY+RT C H+GL++G A M +LRR++SG+ +E +
Sbjct: 241 ALIRVFCEAGTYIRTLCQHIGLLMGYPAFMKDLRRSKSGLITENE 285
>gi|18312233|ref|NP_558900.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum aerophilum
str. IM2]
gi|37089567|sp|Q8ZYB3.1|TRUB_PYRAE RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|18159675|gb|AAL63082.1| tRNA pseudouridine synthase B [Pyrobaculum aerophilum str. IM2]
Length = 333
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 39/223 (17%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
F K TN +GK P QR+ +EYI+ V LDKP PSSHEV AW+K+IL E+
Sbjct: 9 FSKFEESTNPQ----WGKPPSQRSTEEYIKYSLVILDKPRGPSSHEVAAWVKKILGVERA 64
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GH+GTLDPK SG L + I T+++ + + K Y+++ K H
Sbjct: 65 GHAGTLDPKVSGVLPIAIAEGTKVLMALSRSDKVYVAVAKFH------------------ 106
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS--------NLISSDVTLSTG---IIW 170
G +E+ + L E + +KP + + S D+ G +I
Sbjct: 107 ------GDVDEDKLRAVLQEFQGVIYQKPPLRSAVKRQLRTRRVYSLDLLELDGRYAVIK 160
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+ +AGTY R +G VLGVGA M ELRR +E++ +
Sbjct: 161 MHVEAGTYARKIIHDIGEVLGVGANMRELRRIAVSCYTEDEAV 203
>gi|257053389|ref|YP_003131222.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus utahensis
DSM 12940]
gi|256692152|gb|ACV12489.1| pseudouridylate synthase TruB domain protein [Halorhabdus utahensis
DSM 12940]
Length = 295
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 30/216 (13%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R+ E + G +NLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL + +
Sbjct: 7 PEDRSPAELLSFGVLNLDKPPGPSAHQVAAWVRDLATVERAAHAGTLDPKVTGCLPMLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + + KEY+++ +LH E +A S + + + +
Sbjct: 67 DATRMAQVFDDSDKEYVAVLELH---ERLADPSTLEAVADE----------------FEG 107
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK ++ L + ++ ++C++GTY+R C MGL LG G
Sbjct: 108 EIYQKPPKKSAVVRRLRSREIHRLDVLEAEDRRALLSIRCESGTYIRKLCHDMGLALGTG 167
Query: 194 AQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
A M +LRR + + D LVT H F ++ W
Sbjct: 168 AHMGDLRRAATDPFDDAD-LVTM---HDFVDALAWW 199
>gi|448410986|ref|ZP_21575528.1| H/ACA RNA-protein complex component Cbf5p [Halosimplex carlsbadense
2-9-1]
gi|445670875|gb|ELZ23471.1| H/ACA RNA-protein complex component Cbf5p [Halosimplex carlsbadense
2-9-1]
Length = 289
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL + +
Sbjct: 7 PDDRSVDDLLEFGVVNLDKPPGPSAHQVAAWVRDMAGVERAAHAGTLDPKVTGCLPMLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + + KEYI++ +LH A A + ++ A +
Sbjct: 67 DATRMAQVFDDSDKEYIAVLELHGP----APADLRSVL-----------------AEFEG 105
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
++ P KK ++ L + +V ++ ++C++GTY+R C +GL LG G
Sbjct: 106 DIYQKPPKKSAVVRRLRSREIYALDALEVEDRRALLRVRCESGTYIRKLCHDLGLALGTG 165
Query: 194 AQMIELRRNRSG 205
A M LRR +G
Sbjct: 166 AHMGHLRRTVTG 177
>gi|374327767|ref|YP_005085967.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum sp. 1860]
gi|356643036|gb|AET33715.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum sp. 1860]
Length = 330
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V+ T +GK P QR+ +E+IR V LDKP PSSHEV AW+K+IL ++ GH+GT
Sbjct: 10 VKVEESTNPQWGKPPSQRSAEEHIRYSMVVLDKPRGPSSHEVAAWVKKILGVDRAGHAGT 69
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK SG L + + T+++ + + K Y+++ K H V+ A+ + + QG++
Sbjct: 70 LDPKVSGVLPIAVAEGTKVLMALSRSDKVYVAVAKFHGGVD--AERLRAVLQEFQGVI-- 125
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ KP + A + T +L ++ +I + +AGTY R +
Sbjct: 126 YQKPPLRS---------AVKRQLRTRHVYSLELLELDGRYAVIKMHVEAGTYARKIIHDI 176
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G VLGVGA M ELRR SE++ +
Sbjct: 177 GEVLGVGANMRELRRVAVSCYSEDEAV 203
>gi|407464263|ref|YP_006775145.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
sp. AR2]
gi|407047451|gb|AFS82203.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
sp. AR2]
Length = 333
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RTI++ + G + LDKP P+SHE VAW KR+L+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRLLKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
T+ + KEY ++ ++HS SK+K+ Q ++D P A L
Sbjct: 87 TKALGVLLYGPKEYHALGRVHSL------PSKEKL---QEVVDMFRGEIFQKPPQRSAVL 137
Query: 143 EAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
+ Y + + L T I+ C+AGTY+R +G +LG GA M+ELRR
Sbjct: 138 RQT-RTRTIYEFEIIEQKERLLLTRIL---CEAGTYIRKLYYDIGEILGPGATMVELRRT 193
Query: 203 RSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R SE DGLVT H + W
Sbjct: 194 RVDQFSERDGLVTL---HELADAFALW 217
>gi|363548482|sp|Q975L5.2|TRUB_SULTO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|109715688|dbj|BAE96921.1| Cbf5 [Sulfolobus tokodaii]
gi|342306177|dbj|BAK54266.1| box H/ACA sRNP component Cbf5 [Sulfolobus tokodaii str. 7]
Length = 337
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 115/213 (53%), Gaps = 14/213 (6%)
Query: 6 NVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSG 65
N+ + YT +G +R I+ I+ +N DKP P+SHEV WIK++ + K GH G
Sbjct: 21 NIIQDSYTNEKYGYFADKRPIEVLIKNSIINADKPPGPTSHEVAYWIKQMFKVSKAGHGG 80
Query: 66 TLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLD 125
TLDPK +G L + ++ AT+L+ S+GKEY+ + ++H + K +I + +
Sbjct: 81 TLDPKVTGVLPIGLENATKLMSYISSSGKEYVCLMQVHCDFN----IDELKQIISKFIGI 136
Query: 126 KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
+ KP P + ++ KK Y ++ D ++ + GTY+R C
Sbjct: 137 IYQKP----PVR--SSVKRRTRKKKIY---DIEILDTDKRFILLRISSDPGTYMRKLCHD 187
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G++LG GA M ELRR RSGI +E++ LVT ++
Sbjct: 188 IGVILGCGAHMRELRRIRSGIFTEKN-LVTLQE 219
>gi|352683031|ref|YP_004893555.1| tRNA pseudouridine synthase B [Thermoproteus tenax Kra 1]
gi|350275830|emb|CCC82477.1| tRNA pseudouridine synthase B [Thermoproteus tenax Kra 1]
Length = 338
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 10 NHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDP 69
N T +G+ P R I+EYIR +V LDKP PSSHE VAW+KRIL E GHSGTLDP
Sbjct: 18 NETTDPQWGRPPADRPIEEYIRYSFVVLDKPRGPSSHETVAWLKRILNVEVAGHSGTLDP 77
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
SG L V I T+ + + A K Y+++ K H V+ +++ L G
Sbjct: 78 NVSGVLPVAIAEGTKALMALSRADKTYVAVAKFHGDVDEAK--------LREVLAYFTGA 129
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISS----DVTLSTGIIWLKCQAGTYVRTYCVH 185
+ P L +A ++ ++ + S ++ ++ + +AGTY R
Sbjct: 130 IYQRPP------LRSAVKRQ---LRVRHVYSLELLELDGRYALLRMHVEAGTYARKLIHD 180
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G VLGV A M ELRR G +EE+
Sbjct: 181 IGEVLGVSANMRELRRVGVGCFTEEEAF 208
>gi|335437482|ref|ZP_08560258.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|335438879|ref|ZP_08561610.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|334890150|gb|EGM28424.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|334895830|gb|EGM33993.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
Length = 295
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 30/216 (13%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R+ E + G +NLDKP PS+H+V AW++ + ++ H+GTLDPK +GCL + +
Sbjct: 7 PEDRSPAELLSFGVLNLDKPPGPSAHQVAAWVRDLATVDRAAHAGTLDPKVTGCLPMLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + + KEY+++ +LH E +A ++ + + + +
Sbjct: 67 DATRMAQVFDDSRKEYVAVLELH---ERLADSAALEAIADE----------------FEG 107
Query: 141 ELEAAPNKKPTYMK----SNLISSDVTLSTG---IIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK ++ + S DV + ++ ++C++GTY+R C MGL LG G
Sbjct: 108 EIYQKPPKKSAVVRRLRSREIHSLDVLEAEDRRVLLSIRCESGTYIRKLCHDMGLALGTG 167
Query: 194 AQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
A M +LRR + + D LVT H F ++ W
Sbjct: 168 AHMGDLRRAATDPFEDSD-LVTM---HDFVDALAWW 199
>gi|118575518|ref|YP_875261.1| pseudouridine synthase [Cenarchaeum symbiosum A]
gi|118194039|gb|ABK76957.1| pseudouridine synthase [Cenarchaeum symbiosum A]
Length = 333
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+R++++ + G V LDKP P+SHE VAW KRIL K GHSGTLDP+ SG L + + A
Sbjct: 27 KRSVEQLLEYGIVLLDKPPGPTSHEAVAWAKRILEIPKAGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
T+ + KEY+++ + H A+++ K + + + H KP + + +
Sbjct: 87 TKALGVLLIGPKEYVAVGRFH-ALQDSEKLGELARLFTGPI---HQKPPQRSSVLRRTRV 142
Query: 143 EAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
+ + K L+ ++ + C+AGTY+R MG V+G GA MIELRR
Sbjct: 143 KTIHEIEVLEQKERLV---------LMRVSCEAGTYIRKLLYDMGEVVGSGASMIELRRT 193
Query: 203 RSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R +E GLVT H + W
Sbjct: 194 RVDHFTEGSGLVTM---HELAEAYAVW 217
>gi|374636750|ref|ZP_09708303.1| rRNA pseudouridine synthase [Methanotorris formicicus Mc-S-70]
gi|373558011|gb|EHP84380.1| rRNA pseudouridine synthase [Methanotorris formicicus Mc-S-70]
Length = 345
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G +P +R + + ++ G V +DKPS P+SHEV W+K+IL +K GH GTLDPK +G L
Sbjct: 39 YGCNPYEREMDDLLKNGVVVIDKPSGPTSHEVSTWVKKILNLKKAGHGGTLDPKVTGVLP 98
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ ++ T+ + KEYI + LH A ++K IK+ + GK + P
Sbjct: 99 IALENTTKCIPMWHIPPKEYICLMHLHR------DADEEK--IKKIFKEFEGKILQRPP- 149
Query: 137 SYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQ 195
L+AA + K L D+ + +KCQ+GTY+R MG LG A
Sbjct: 150 -----LKAAVKRSLRIRKIHKLEILDIDGRDILFRVKCQSGTYIRKLVDDMGEALGTSAH 204
Query: 196 MIELRRNRSGIQSEEDGL 213
M ELRR +SG+ E D +
Sbjct: 205 MQELRRVKSGVFEENDAV 222
>gi|119872635|ref|YP_930642.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum islandicum
DSM 4184]
gi|189036566|sp|A1RTL7.1|TRUB_PYRIL RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|119674043|gb|ABL88299.1| tRNA pseudouridine synthase B [Pyrobaculum islandicum DSM 4184]
Length = 328
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
++ V+T T +GK P +RT +EYIR V +DKP PSSHEV AW+K+IL E+ GH
Sbjct: 7 EIFVKTQESTNPEWGKPPSKRTTEEYIRYSLVLIDKPRGPSSHEVAAWVKKILGVERAGH 66
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK SG L + + T+ + + + K Y+++ K H
Sbjct: 67 AGTLDPKVSGVLPIAVAEGTKALLALSRSDKVYVAVAKFH-------------------- 106
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLK 172
G +E + L E + +KP S +L ++ +I +
Sbjct: 107 ----GDVDEEKLKAVLNEFQGVIYQKPPLRSSVKRQLRTRHVYSLELLELDGRYAVIKMH 162
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+AGTY R +G VLGVGA M ELRR
Sbjct: 163 VEAGTYARKLIHDIGEVLGVGANMRELRR 191
>gi|110668665|ref|YP_658476.1| H/ACA RNA-protein complex component Cbf5p [Haloquadratum walsbyi
DSM 16790]
gi|109626412|emb|CAJ52872.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi DSM
16790]
Length = 339
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 19 KSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVC 78
+SP R++ + G VNLDKP PS+H+V AW++ ++ E+ H+GTLDPK +GCL +
Sbjct: 9 ESPDNRSLADICNFGVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPIL 68
Query: 79 IDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY 138
+ ATRL KEY+++ + H S M+I+ + KP + S
Sbjct: 69 LGEATRLAPVFLEGTKEYLAVLEFHG-----PPPSDLSMIIETFEGTIYQKPPRKSAVSR 123
Query: 139 LAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIE 198
+K T +++ D ++ ++C++GTY+R C +GL G GA M +
Sbjct: 124 RL-------RKRTIETLDILEVDSDAQQALLRIRCESGTYIRKLCHDLGLAAGTGAHMGD 176
Query: 199 LRR 201
LRR
Sbjct: 177 LRR 179
>gi|329766344|ref|ZP_08257890.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137113|gb|EGG41403.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 332
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RT+++ + G + LDKP P+SHE VAW KRIL+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
T+ + KEY ++ + HS SK+K+ + +LD P A L
Sbjct: 87 TKALGVLLYGPKEYHALGRFHSL------PSKEKL---EEVLDLFRGEIFQKPPQRSAVL 137
Query: 143 EAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
+ Y L + L ++ C+AGTY+R MG +LG GA MIELRR
Sbjct: 138 RQT-RTRTIYELEVLEQKERLLLARVL---CEAGTYIRKLFYDMGEILGPGATMIELRRT 193
Query: 203 RSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R E DGLVT H + + W
Sbjct: 194 RVDQFYESDGLVTL---HELANAYALW 217
>gi|393796299|ref|ZP_10379663.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 332
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RT+++ + G + LDKP P+SHE VAW KRIL+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
T+ + KEY ++ + HS SK+K+ + +LD P A L
Sbjct: 87 TKALGVLLYGPKEYHALGRFHSL------PSKEKL---EEVLDLFRGEIFQKPPQRSAVL 137
Query: 143 EAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
+ Y L + L ++ C+AGTY+R MG +LG GA MIELRR
Sbjct: 138 RQT-RTRTIYELEVLEQKERLLLARVL---CEAGTYIRKLFYDMGEILGPGATMIELRRT 193
Query: 203 RSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R E DGLVT H + + W
Sbjct: 194 RVDQFYESDGLVTL---HELANAYALW 217
>gi|238620204|ref|YP_002915030.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.16.4]
gi|238381274|gb|ACR42362.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.16.4]
Length = 338
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 14/210 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
+R + T +G P +R I +I+ +NLDKP P+SHEV WIK++L K GH GT
Sbjct: 22 IRKDSETSDTYGYYPEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGT 81
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
L PK +G L + I+ AT+++ GKEY+ + ++H + + +IK +
Sbjct: 82 L-PKVTGVLPIGIENATKIMNYISKGGKEYVCVMQVHCEYDK----EELTKIIKSFEGEI 136
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ +P + + + + + M L+ + + C +GTY+R C +
Sbjct: 137 YQRPPVRSSVKRRLRVRSIYDIEILDMDKKLV---------LFRVSCDSGTYMRKLCHDI 187
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++ G GA M ELRR RSGI +E LV
Sbjct: 188 GIIYGCGAHMRELRRTRSGIFTESTNLVKL 217
>gi|386876390|ref|ZP_10118508.1| putative rRNA pseudouridine synthase [Candidatus Nitrosopumilus
salaria BD31]
gi|386805797|gb|EIJ65298.1| putative rRNA pseudouridine synthase [Candidatus Nitrosopumilus
salaria BD31]
Length = 333
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RTI++ + G + LDKP P+SHE VAW KR+L+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRLLKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM--MIKQGLLDKHGKPNENTPASYLA 140
T+ + KEY ++ ++HS SK+K+ +I+ + KP + +
Sbjct: 87 TKALGVLLYGPKEYHALGRVHSL------PSKEKLNEVIEMFRGEIFQKPPQRSAVV--- 137
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ Y L + L T I+ C+AGTYVR +G +LG GA M+ELR
Sbjct: 138 ---RQTRTRTIYEFELLEQKERLLLTRIL---CEAGTYVRKLYYDIGEILGPGATMVELR 191
Query: 201 RNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R R SE+DGLVT H + W
Sbjct: 192 RTRVDQFSEKDGLVTL---HELADAFALW 217
>gi|124484901|ref|YP_001029517.1| hypothetical protein Mlab_0072 [Methanocorpusculum labreanum Z]
gi|124362442|gb|ABN06250.1| pseudouridylate synthase TruB domain protein [Methanocorpusculum
labreanum Z]
Length = 282
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 14/173 (8%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP P+SH+V AW+ ++L+ + GHSGTLDP SG L+V + +A RL
Sbjct: 5 GIILVDKPRGPTSHQVAAWVGKMLKSD-VGHSGTLDPMVSGVLVVMLGKAVRLAPLLLQH 63
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY++ +LH+ + + + ++KQ + +P + + +
Sbjct: 64 EKEYVACMRLHADIPR----ERVEEVVKQFTGRVYQRPPRRSAVKRALRIRVIYRIELID 119
Query: 153 MKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
M+ L+ ++ ++C+AGTY+R+ CVH+G VLG G QMIELRR +SG
Sbjct: 120 MQDRLV---------LLKIRCEAGTYIRSVCVHIGNVLGCGGQMIELRRTKSG 163
>gi|300710518|ref|YP_003736332.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|448294840|ref|ZP_21484917.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|299124201|gb|ADJ14540.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|445585822|gb|ELY40112.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
Length = 289
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 14/182 (7%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + + G VNLDKP PS+H+V AW++ ++ EK H+GTLDPK +GCL V
Sbjct: 6 PEERDLGSLVEFGVVNLDKPPGPSAHQVSAWVRDLVGVEKAAHAGTLDPKVTGCLPVLTG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATRL + KEY+++ +LH + + +I + D + KP + S
Sbjct: 66 TATRLAPAFLEGEKEYVAVLELHGPA-----PADIEAVIGEFEGDLYQKPPRKSAVSRRL 120
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ T + +L+ +V ++ ++C++GTYVR C +GL LG GA M LR
Sbjct: 121 RVR-------TIYELDLL--EVQERKALLKIRCESGTYVRKLCHDLGLALGTGAHMGHLR 171
Query: 201 RN 202
R
Sbjct: 172 RT 173
>gi|385804140|ref|YP_005840540.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi C23]
gi|339729632|emb|CCC40906.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi C23]
Length = 339
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 19 KSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVC 78
+SP R++ + G VNLDKP PS+H+V AW++ ++ E+ H+GTLDPK +GCL +
Sbjct: 9 ESPDNRSLADICNFGVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPIL 68
Query: 79 IDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY 138
+ ATRL KEY+++ + H S M+I+ + KP + S
Sbjct: 69 LGEATRLAPVFLEGIKEYLAVLEFHG-----PPPSDLSMIIETFEGTIYQKPPRKSAVSR 123
Query: 139 LAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIE 198
+K T +++ D ++ ++C++GTY+R C +GL G GA M +
Sbjct: 124 RL-------RKRTIETLDILEVDSDAQQALLHIRCESGTYIRKLCHDLGLAAGTGAHMGD 176
Query: 199 LRR 201
LRR
Sbjct: 177 LRR 179
>gi|161527914|ref|YP_001581740.1| pseudouridylate synthase subunit TruB [Nitrosopumilus maritimus
SCM1]
gi|160339215|gb|ABX12302.1| pseudouridylate synthase TruB domain protein [Nitrosopumilus
maritimus SCM1]
Length = 332
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 20/209 (9%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RTI++ + G + LDKP P+SHE VAW KRIL+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM--MIKQGLLDKHGKPNENTPASYLA 140
T+ + KEY ++ ++HS SK+K+ +I+ + + KP + +
Sbjct: 87 TKALGVLLFGPKEYHALGRVHSL------PSKEKLHEVIESLTGEIYQKPPQRSAVVRQT 140
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ K L+ + V C+AGTY+R +G +LG GA MIELR
Sbjct: 141 RTRTIYEFEVLEQKERLLLTRVL---------CEAGTYIRKLYYDLGEILGPGATMIELR 191
Query: 201 RNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R R E DGLVT H + + W
Sbjct: 192 RTRVDQFRETDGLVTL---HELANAFALW 217
>gi|325967846|ref|YP_004244038.1| rRNA pseudouridine synthase [Vulcanisaeta moutnovskia 768-28]
gi|323707049|gb|ADY00536.1| rRNA pseudouridine synthase [Vulcanisaeta moutnovskia 768-28]
Length = 348
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 33/235 (14%)
Query: 10 NHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDP 69
N T +G P +R + Y++ G+V +DKP P+SHEV AWIK++L ++ GHSGTLDP
Sbjct: 18 NEQTNPEWGVPPEKRPMDLYLKYGFVVIDKPRGPTSHEVAAWIKKMLNLDRAGHSGTLDP 77
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
SG L + + +T+ + + + KEY+ + K+H V + K + ++++ + +
Sbjct: 78 GVSGVLPIALGESTKAMPAINTLDKEYVMVMKMHGDVND----EKLRAVLREFTGAIYQR 133
Query: 130 P------NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
P ++ ELE L+ D + +I + ++GTY R
Sbjct: 134 PPLRSAVKRQLRVKHVYELE-------------LLERDGKYA--LIRMNVESGTYARKLA 178
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLV--------TFRQEHMFEHIVSTWV 230
+G VLGVGA M ELRR R G +E++ + T +++ E ++ T+V
Sbjct: 179 YDIGEVLGVGANMRELRRIRVGCFTEKETITLQDLKDAYTLYRDYGIEDLLRTYV 233
>gi|126458682|ref|YP_001054960.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum calidifontis
JCM 11548]
gi|189036565|sp|A3MS77.1|TRUB_PYRCJ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|126248403|gb|ABO07494.1| tRNA pseudouridine synthase B [Pyrobaculum calidifontis JCM 11548]
Length = 333
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 21/202 (10%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
F KL TN +GK P R+ +E+IR ++ LDKP P+SHEV AW+K+IL E+
Sbjct: 9 FVKLEEGTNPQ----WGKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERA 64
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHS--AVENVAKASKKKMMI 119
GHSGTLDPK SG L V + T+++ + A K YI++ K H VEN +
Sbjct: 65 GHSGTLDPKVSGVLPVAVAEGTKVLMALSRADKVYIAVAKFHGDVDVEN----------L 114
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
++ L + G+ + P A + T +L ++ ++ + +AGTY
Sbjct: 115 RRVLQELQGEIYQKPPLR-----SAVKRQLRTRRVYSLELLELDGRYAVLKMHVEAGTYA 169
Query: 180 RTYCVHMGLVLGVGAQMIELRR 201
R +G +LGVGA M ELRR
Sbjct: 170 RKLIHDLGEILGVGANMRELRR 191
>gi|407461931|ref|YP_006773248.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045553|gb|AFS80306.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
koreensis AR1]
Length = 331
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 20/209 (9%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RTI++ + G + LDKP P+SHE VAW KRIL+ K GHSGTLDP+ SG L + + A
Sbjct: 27 KRTIEQLLNYGIIILDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLL--DKHGKPNENTPASYLA 140
T+ + KEY ++ ++HS SK+K+ LL + + KP + +
Sbjct: 87 TKALGVLLFGPKEYHALGRVHSL------PSKEKLHEVIELLTGEIYQKPPQRSAVV--- 137
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ Y L + L T ++ C+AGTY+R +G +LG GA MIELR
Sbjct: 138 ---RQTRTRTIYEFEVLEQKERLLLTRVL---CEAGTYIRKLYYDLGEILGPGATMIELR 191
Query: 201 RNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R R E DGLVT H + + W
Sbjct: 192 RTRVDQFRETDGLVTL---HELANAFALW 217
>gi|313125693|ref|YP_004035963.1| tRNA pseudouridine synthase b [Halogeometricum borinquense DSM
11551]
gi|448285532|ref|ZP_21476774.1| H/ACA RNA-protein complex component Cbf5p [Halogeometricum
borinquense DSM 11551]
gi|312292058|gb|ADQ66518.1| tRNA pseudouridine synthase B [Halogeometricum borinquense DSM
11551]
gi|445576540|gb|ELY30993.1| H/ACA RNA-protein complex component Cbf5p [Halogeometricum
borinquense DSM 11551]
Length = 290
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL + +
Sbjct: 8 PDDRSLDDLLSFGVVNLDKPPGPSAHQVAAWVRDMAGVERAAHAGTLDPKVTGCLPMLLG 67
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH KP + S +A
Sbjct: 68 DATRMAQVFLEGSKEYVSVLELH-------------------------KPAPSDLESVVA 102
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 103 EFEGDVYQKPPRKSAVSRRLRSREVYDLDLLEVEDRQALLRIRCESGTYIRKLCHDIGLA 162
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
G GA M LRR + + D LVT
Sbjct: 163 AGTGAHMGHLRRTATDPFDDTD-LVTL 188
>gi|355571399|ref|ZP_09042651.1| rRNA pseudouridine synthase [Methanolinea tarda NOBI-1]
gi|354825787|gb|EHF10009.1| rRNA pseudouridine synthase [Methanolinea tarda NOBI-1]
Length = 303
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 16/181 (8%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R G + +DKP PSSH+V AW+ IL + GH+GTLDP SG L+V + RA RL
Sbjct: 11 RGGLIVIDKPRGPSSHQVTAWVGDILG-QNVGHAGTLDPGVSGVLVVMVGRAVRLAPVLL 69
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
S KEY+++ + H + + I++ + G+ + P A N +
Sbjct: 70 SHDKEYVALVRFH--------GNPGEEAIRKACSEFCGRIYQRPPRRS----SVARNLRI 117
Query: 151 TYMKS-NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
++S +L+ D L+ ++ + C AGTY+R+ C HMGL LG GA M ELRR RSG E
Sbjct: 118 RTVQSLDLLELDGRLA--VLRICCDAGTYIRSLCHHMGLALGCGAHMQELRRTRSGPFRE 175
Query: 210 E 210
+
Sbjct: 176 D 176
>gi|154150056|ref|YP_001403674.1| pseudouridylate synthase [Methanoregula boonei 6A8]
gi|153998608|gb|ABS55031.1| Pseudouridylate synthase [Methanoregula boonei 6A8]
Length = 322
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG + +DKP PSSH+V AW+ +L C GH+GTLDP+ SG L+V + A RL
Sbjct: 22 AGIIVIDKPRGPSSHQVAAWVGTMLGCP-VGHAGTLDPQVSGILLVMLGNAVRLAPLLLK 80
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KEYI + +LH V+ + M ++ + +P + L + T
Sbjct: 81 HDKEYICLMRLHKEVDR----QRIDAMAEEFSGRIYQRPPRRSAVKRLLRIR-------T 129
Query: 152 YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
K ++ DV + ++C AGTY+R+ C HMGL LG GA M ELRR RSG E+
Sbjct: 130 IKKLEIL--DVQGRLVLFKVECDAGTYIRSLCHHMGLALGTGAHMQELRRTRSGAFDEQ 186
>gi|119874609|gb|ABM05781.1| dyskerin [Tetranychus urticae]
Length = 233
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 10/137 (7%)
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
+RATRLVKSQQ AGKEY+ IF+LH+ VEN K + L + P + L
Sbjct: 1 ERATRLVKSQQGAGKEYVGIFRLHAPVENEKKVLSAVETLTGALFQR--PPLISAVKRQL 58
Query: 140 AELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIEL 199
+ T +S L+ + G+I + C+AGTY+RT CVH+GLVLG G QMIEL
Sbjct: 59 --------RVRTIYESKLLEFNNDKGIGVISISCEAGTYIRTLCVHIGLVLGTGGQMIEL 110
Query: 200 RRNRSGIQSEEDGLVTF 216
RR RSGI +E D LVT
Sbjct: 111 RRIRSGIVTEYDNLVTM 127
>gi|336121792|ref|YP_004576567.1| tRNA pseudouridine synthase B [Methanothermococcus okinawensis IH1]
gi|334856313|gb|AEH06789.1| tRNA pseudouridine synthase B [Methanothermococcus okinawensis IH1]
Length = 329
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L R T +G +P R I E ++ G V +DKPS P+SHEV +W+K+IL GH
Sbjct: 2 ELITREESKTNYEYGFNPYNRPIAELLQYGLVVIDKPSGPTSHEVSSWVKKILHLNLAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIKQ 121
+GTLDPK +G L V ++ T+ ++ KEY+ + LH + E++ + K
Sbjct: 62 AGTLDPKVTGVLPVALENTTKCIQVWHMLPKEYVCLMHLHRDATEEDIIRIFK------- 114
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVR 180
+ G+ + P L+AA + K + + +++ +KCQ+GTY+R
Sbjct: 115 ---EFEGRIFQRPP------LKAAVKRSLRIRKIHKLELLEMDGRDVLFKVKCQSGTYIR 165
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
T +G LG A M ELRR +SG EE+ +
Sbjct: 166 TLAEDIGEALGTSAHMQELRRTKSGPFGEEEAV 198
>gi|170291189|ref|YP_001738005.1| pseudouridylate synthase [Candidatus Korarchaeum cryptofilum OPF8]
gi|226708669|sp|B1L793.1|TRUB_KORCO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|170175269|gb|ACB08322.1| Pseudouridylate synthase [Candidatus Korarchaeum cryptofilum OPF8]
Length = 325
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 102/201 (50%), Gaps = 14/201 (6%)
Query: 12 YTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCE-KTGHSGTLDPK 70
Y P P+G P +R I Y+ G + LDKP PSSHEV +KRIL K GH GTLDPK
Sbjct: 14 YEPGPYGYRPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPK 73
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
SG L + + AT+L K KEY+ LH V + +G LDK P
Sbjct: 74 VSGVLPIVLGNATKLSKFISGYDKEYVGTLYLHGDV---------PIDELKGALDKFTGP 124
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P A ++ + + Y L+SS+ + ++ ++GTY+R +G L
Sbjct: 125 IFQRPPVKSA-VKRSLRVRRVY-SIELLSSEGRFHK--LRVRVESGTYIRKLFFDIGEFL 180
Query: 191 GVGAQMIELRRNRSGIQSEED 211
GVG M +LRR RSGI +E+D
Sbjct: 181 GVGGSMRDLRRIRSGIFTEKD 201
>gi|340344269|ref|ZP_08667401.1| Pseudouridylate synthase TruB domain protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519410|gb|EGP93133.1| Pseudouridylate synthase TruB domain protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 332
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ L V T +G +RT+++ + G + LDKP P+SHE VAW KRIL+ K
Sbjct: 5 QLENLVVIDQDITDDTYGTYYDKRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPK 64
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
GHSGTLDP+ SG L + + AT+ + KEY ++ + HS + + K + M +
Sbjct: 65 IGHSGTLDPQVSGVLPLGLGEATKALGVLLYGPKEYHALGRFHS-LPSKQKLDEVLEMFR 123
Query: 121 QGLLDKHGKPN---ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGT 177
+ K + + T + ELE K+ + L C+AGT
Sbjct: 124 GEIFQKPPQRSAVLRQTRTRTIYELEVLEQKERLLLTRIL---------------CEAGT 168
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
Y+R +G +LG GA MIELRR + E DGLVT H + + W
Sbjct: 169 YIRKLYYDIGEILGPGATMIELRRTKVDQFHESDGLVTL---HELANAYALW 217
>gi|289597166|ref|YP_003483862.1| pseudouridylate synthase TruB domain protein [Aciduliprofundum
boonei T469]
gi|289534953|gb|ADD09300.1| pseudouridylate synthase TruB domain protein [Aciduliprofundum
boonei T469]
Length = 286
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
L+R++++ + G V +DKP P+SH+V AW++ IL KTGH+GTLDPK +G L V + R
Sbjct: 2 LKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 61
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
AT+L+ KEY+ + + H + +K + ++K+ G+ + P
Sbjct: 62 ATKLINLLHLVPKEYVGVMRFHKDFDE----NKVREIMKEF----EGEIYQVPPLRSAVA 113
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
K + +L+ DV K ++GTY+RT C +G + +GA M +LRR
Sbjct: 114 RRLRKRKVYSIEILDLLDRDVLFRA-----KVESGTYIRTLCNDIGEAMCIGAHMEDLRR 168
Query: 202 NRSGIQSEEDG 212
+G EED
Sbjct: 169 TATGHFREEDA 179
>gi|254167013|ref|ZP_04873866.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
gi|197623869|gb|EDY36431.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
Length = 285
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
++R++++ + G V +DKP P+SH+V AW++ IL KTGH+GTLDPK +G L V + R
Sbjct: 1 MKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 60
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
AT+L+ KEY+ + + H + +K + ++K+ G+ + P
Sbjct: 61 ATKLINLLHLVPKEYVGVMRFHKDFDE----NKVREIMKEF----EGEIYQVPPLRSAVA 112
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
K + +L+ DV K ++GTY+RT C +G + +GA M +LRR
Sbjct: 113 RRLRKRKVYSIEILDLLDRDVLFRA-----KVESGTYIRTLCNDIGEAMCIGAHMEDLRR 167
Query: 202 NRSGIQSEEDG 212
+G EED
Sbjct: 168 TATGHFREEDA 178
>gi|119874617|gb|ABM05785.1| dyskerin [Ciona intestinalis]
Length = 238
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 10/142 (7%)
Query: 75 LIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENT 134
LIVC++RATRLVKSQQSAGKEY+ I +LH +EN K ++ + L + P +
Sbjct: 1 LIVCVERATRLVKSQQSAGKEYVCIVRLHGMIENQLKLARAIETLTGALFQR--PPLISA 58
Query: 135 PASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGA 194
L + T +S L+ D+ G+ W+ C+AGTY+RT CVH+GL+LGVG
Sbjct: 59 VKRQL--------RVRTIYQSKLLEYDMDKRLGVFWVSCEAGTYIRTLCVHLGLLLGVGG 110
Query: 195 QMIELRRNRSGIQSEEDGLVTF 216
QM ELRR RSGI SE D LVT
Sbjct: 111 QMQELRRVRSGIMSESDDLVTM 132
>gi|254167810|ref|ZP_04874660.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
gi|197623338|gb|EDY35903.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
Length = 285
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
++R++++ + G V +DKP P+SH+V AW++ IL KTGH+GTLDPK +G L V + R
Sbjct: 1 MKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 60
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
AT+L+ KEY+ + + H + +K + ++K+ G+ + P
Sbjct: 61 ATKLINLLHLVPKEYVGVMRFHKDFDE----NKVREIMKEF----EGEIYQVPPLRSAVA 112
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
K + +L+ DV K ++GTY+RT C +G + +GA M +LRR
Sbjct: 113 RRLRKRKVYSIEILDLLDRDVLFRA-----KVESGTYIRTLCNDIGEAMCIGAHMEDLRR 167
Query: 202 NRSGIQSEEDG 212
+G EED
Sbjct: 168 TATGHFREEDA 178
>gi|167045203|gb|ABZ09863.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG8O8]
Length = 339
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 17/204 (8%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
FG +R++++ + G + LDKP P+SH+VVAW K+IL K GHSGTLDP+ +G L
Sbjct: 21 FGTYYDKRSVEQLLNYGLILLDKPPGPTSHQVVAWAKKILEIPKAGHSGTLDPQVTGVLP 80
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM--MIKQGLLDKHGKPNENT 134
+ + AT+ + KEY + +LH SK+K+ ++K+ D + +P + +
Sbjct: 81 LGLGDATKALGVLLFGSKEYQGLGRLHLL------PSKEKLDGILKEFCGDIYQRPPQRS 134
Query: 135 PASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGA 194
S + + K LI +I + C++GTY+R +G VLG GA
Sbjct: 135 AVSRQTRIRKIFELELLEQKERLI---------LIRITCESGTYIRKLIYDIGEVLGPGA 185
Query: 195 QMIELRRNRSGIQSEEDGLVTFRQ 218
M+ELRR R E LVT Q
Sbjct: 186 TMVELRRTRVNQFHENHPLVTLHQ 209
>gi|448600354|ref|ZP_21655937.1| H/ACA RNA-protein complex component Cbf5p [Haloferax alexandrinus
JCM 10717]
gi|445735292|gb|ELZ86843.1| H/ACA RNA-protein complex component Cbf5p [Haloferax alexandrinus
JCM 10717]
Length = 289
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GLV
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIYDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLV 160
Query: 190 LGVGAQMIELRRNRSGIQSEED 211
LG G M LRR + + D
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD 182
>gi|448604882|ref|ZP_21657927.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sulfurifontis
ATCC BAA-897]
gi|445743203|gb|ELZ94686.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sulfurifontis
ATCC BAA-897]
Length = 289
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTYVR C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIYDLDLLEVKDRQALLRIRCESGTYVRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG G M LRR + + D LVT
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD-LVTL 186
>gi|448731529|ref|ZP_21713828.1| H/ACA RNA-protein complex component Cbf5p [Halococcus
saccharolyticus DSM 5350]
gi|445791857|gb|EMA42476.1| H/ACA RNA-protein complex component Cbf5p [Halococcus
saccharolyticus DSM 5350]
Length = 292
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 28/188 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + + G VNLDKP PS+H+V W++ ++ ++ H+GTLDPK +GCL + +
Sbjct: 5 PGERPPTDRLDFGVVNLDKPPGPSAHQVTGWVRDLVGVDRAAHAGTLDPKVTGCLPILLG 64
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATRL + KEY+++ +LH + A A++
Sbjct: 65 DATRLAQVFLEGAKEYVAVLELHGPTPDDLDAVL---------------------AAFEG 103
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
++ P KK + L DV ++ ++C++GTYVR C +GL LG G
Sbjct: 104 PIQQKPPKKSAVTRRLRVRTIHALDPLDVEERRVLLRIRCESGTYVRKLCHDLGLALGTG 163
Query: 194 AQMIELRR 201
A M +LRR
Sbjct: 164 AHMGDLRR 171
>gi|448732123|ref|ZP_21714405.1| H/ACA RNA-protein complex component Cbf5p [Halococcus salifodinae
DSM 8989]
gi|445805035|gb|EMA55262.1| H/ACA RNA-protein complex component Cbf5p [Halococcus salifodinae
DSM 8989]
Length = 292
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 28/188 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V W++ ++ ++ H+GTLDPK +GCL + +
Sbjct: 5 PDERPPDDRREFGVVNLDKPPGPSAHQVTGWVRDLVGVDRAAHAGTLDPKVTGCLPILLG 64
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATRL + KEY+++ +LH + +A A++
Sbjct: 65 DATRLAQVFLEGAKEYVAVLELHGPAPDDLEAVL---------------------AAFEG 103
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
++ P KK + L DV ++ ++C++GTYVR C +GL LG G
Sbjct: 104 PIQQKPPKKSAVARRLRVRTIHALDPLDVEERRVLLRIRCESGTYVRKLCHDLGLALGTG 163
Query: 194 AQMIELRR 201
A M +LRR
Sbjct: 164 AHMGDLRR 171
>gi|171184565|ref|YP_001793484.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum neutrophilum
V24Sta]
gi|226708675|sp|B1YA64.1|TRUB_THENV RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|170933777|gb|ACB39038.1| pseudouridylate synthase TruB domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 331
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 35/216 (16%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V+ T +GK P +R+ +E+I+ V LDKP PSSHEV AW+K+IL E+ GH+GT
Sbjct: 10 VKIQEATNPEWGKPPSRRSAEEHIKYSLVLLDKPRGPSSHEVAAWVKKILGVERAGHAGT 69
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK SG L + + T+++ + + K Y+++ K
Sbjct: 70 LDPKVSGVLPIAVAEGTKVLLALSRSDKVYVAVAKF------------------------ 105
Query: 127 HGKPNENTPASYLAELEAAPNKKP---TYMKSNLISSDV--------TLSTGIIWLKCQA 175
HG +E + L E + ++P + +K L + V +I + +A
Sbjct: 106 HGDVDEGKLRAVLGEFQGIIYQRPPLRSAVKRQLRTRQVYSIELLELDGRYAVIKMHVEA 165
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
GTY R +G VLGVGA M ELRR +EE+
Sbjct: 166 GTYARKLIHDIGEVLGVGANMRELRRVAVSCYTEEE 201
>gi|322372122|ref|ZP_08046663.1| H/ACA RNA-protein complex component Cbf5p [Haladaptatus
paucihalophilus DX253]
gi|320548131|gb|EFW89804.1| H/ACA RNA-protein complex component Cbf5p [Haladaptatus
paucihalophilus DX253]
Length = 290
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 51/222 (22%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R+ E + G +NLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL
Sbjct: 7 PSERSPAELLEFGVINLDKPPGPSAHQVAAWVRDLCEVEQAAHAGTLDPKVTGCLPTLTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA---S 137
ATRL + KEY+S+ +LH E PA +
Sbjct: 67 SATRLSQVFLEGSKEYVSVLELH----------------------------ETAPADIEA 98
Query: 138 YLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++E EA +KP + L +V ++ ++C++GTY+R C +
Sbjct: 99 IVSEFEAPLYQKPPRKSAVSRKLRVREIYELDVLEVQDRKALLGIRCESGTYIRKLCHDI 158
Query: 187 GLVLGVGAQMIELRRNRS---------GIQSEEDGLVTFRQE 219
GL LG GA M LRR + + D L +R+E
Sbjct: 159 GLALGTGAHMGHLRRTATDPFDDTDLVALHDLSDALARWREE 200
>gi|167044171|gb|ABZ08853.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG5E24]
gi|167044487|gb|ABZ09162.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG6J21]
Length = 337
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RT+++ + G + LDKP+ P+SHEVVAW KRIL K GHSGTLDP+ +G L + +
Sbjct: 27 KRTVEQLLNYGLILLDKPAGPTSHEVVAWTKRILEIPKAGHSGTLDPQVTGVLPLGLGEG 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM--MIKQGLLDKHGKPNENTPASYLA 140
T+ + KEY ++ +LHS SK+K+ ++ + D + KP + +
Sbjct: 87 TKALGVLLLGPKEYHALGRLHSL------PSKEKLENILNEFCGDIYQKPPQRSSVLRQT 140
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ + K NLI +I + C+AGTY+R G +L GA MIELR
Sbjct: 141 RVRKIFELELLEQKENLI---------LIRVLCEAGTYIRKLIYDFGEILVHGATMIELR 191
Query: 201 RNRSGIQSEEDGLVTFRQ 218
R R E LVT Q
Sbjct: 192 RTRVSQFHENYPLVTLHQ 209
>gi|167044960|gb|ABZ09625.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG8G2]
gi|167045438|gb|ABZ10093.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 337
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+RT+++ + G + LDKP+ P+SHEVVAW KRIL K GHSGTLDP+ +G L + +
Sbjct: 27 KRTVEQLLNYGLILLDKPAGPTSHEVVAWTKRILEIPKAGHSGTLDPQVTGVLPLGLGEG 86
Query: 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKM--MIKQGLLDKHGKPNENTPASYLA 140
T+ + KEY ++ +LHS SK+K+ ++ + D + KP + +
Sbjct: 87 TKALGVLLLGPKEYHALGRLHSL------PSKEKLENILNEFCGDIYQKPPQRSSVLRQT 140
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ + K NLI +I + C+AGTY+R G +L GA MIELR
Sbjct: 141 RVRKIFELELLEQKENLI---------LIRVLCEAGTYIRKLIYDFGEILVHGATMIELR 191
Query: 201 RNRSGIQSEEDGLVTFRQ 218
R R E LVT Q
Sbjct: 192 RTRVSQFHENYPLVTLHQ 209
>gi|409722712|ref|ZP_11270127.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
gi|448724292|ref|ZP_21706800.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
gi|445785962|gb|EMA36743.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
Length = 295
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 36/196 (18%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCI 79
SP +RT G VNLDKP PS+H+V W++ ++ E+ H+GTLDPK +GCL + +
Sbjct: 4 SPDERTPAANRSFGVVNLDKPPGPSAHQVTGWVRDLVGVERAAHAGTLDPKVTGCLPILL 63
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
ATR+ + KEY+++ +LH KP + L
Sbjct: 64 GDATRMAQVFLEGDKEYVAVLELH-------------------------KPAPANVENVL 98
Query: 140 AELEAAPNKKPT-------YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGL 188
AE E +KP ++ I L T ++ ++C++GTYVR C +GL
Sbjct: 99 AEFEGPIYQKPPKKSAVARRLRVRTIHDLTPLETEERRILLRIRCESGTYVRKLCHDLGL 158
Query: 189 VLGVGAQMIELRRNRS 204
LG G M +LRR +
Sbjct: 159 ALGTGGHMGDLRRTST 174
>gi|448623416|ref|ZP_21669959.1| H/ACA RNA-protein complex component Cbf5p [Haloferax denitrificans
ATCC 35960]
gi|445752818|gb|EMA04240.1| H/ACA RNA-protein complex component Cbf5p [Haloferax denitrificans
ATCC 35960]
Length = 289
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGAKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIYDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG G M LRR + + D LVT
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD-LVTL 186
>gi|448583678|ref|ZP_21646901.1| H/ACA RNA-protein complex component Cbf5p [Haloferax gibbonsii ATCC
33959]
gi|445729031|gb|ELZ80630.1| H/ACA RNA-protein complex component Cbf5p [Haloferax gibbonsii ATCC
33959]
Length = 289
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREVYDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG G M LRR + + D LVT
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD-LVTL 186
>gi|448545831|ref|ZP_21626242.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-646]
gi|448547989|ref|ZP_21627333.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-645]
gi|448556853|ref|ZP_21632447.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-644]
gi|445703641|gb|ELZ55567.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-646]
gi|445714691|gb|ELZ66449.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-645]
gi|445716202|gb|ELZ67953.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-644]
Length = 289
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIYDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG G M LRR + + D LVT
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD-LVTL 186
>gi|395644893|ref|ZP_10432753.1| rRNA pseudouridine synthase [Methanofollis liminatans DSM 4140]
gi|395441633|gb|EJG06390.1| rRNA pseudouridine synthase [Methanofollis liminatans DSM 4140]
Length = 533
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 94/190 (49%), Gaps = 28/190 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
+AG V +DKP PSSH+V AW+ +L + GH+GTLDP+ SG L+V A RL
Sbjct: 239 QAGLVVVDKPRGPSSHQVAAWVGEMLGVQ-VGHAGTLDPQVSGVLVVMFGPAVRLAPVLL 297
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KEY+ ++H A + ++ E T ++ + P ++
Sbjct: 298 REQKEYVCAMRIHG------DADRAQI--------------EETAREFVGRIYQRPPRRS 337
Query: 151 TYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNR 203
+S +L DV + + C AGTY+R+ C H+GL LG GA M ELRR R
Sbjct: 338 AVKRSLRIRKIHDLEVLDVDGRVVLFRVVCDAGTYIRSLCHHLGLALGTGAHMQELRRTR 397
Query: 204 SGIQSEEDGL 213
SG+ +E+ L
Sbjct: 398 SGLFTEDKAL 407
>gi|219853303|ref|YP_002467735.1| pseudouridylate synthase TruB domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219547562|gb|ACL18012.1| pseudouridylate synthase TruB domain protein [Methanosphaerula
palustris E1-9c]
Length = 299
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
+ G V +DKP PSSH+V AW+ +L + GH+GTLDP SG L+V + A RL
Sbjct: 7 KTGIVIIDKPRGPSSHQVAAWVGDLLGVD-VGHAGTLDPMVSGVLVVMLGNAVRLAPLLL 65
Query: 91 SAGKEYISIFKLHSAVE--NVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNK 148
KEY+++ +LH E +V +A++ E T Y + K
Sbjct: 66 QHDKEYVALMRLHGDAEPSDVQEAAR-----------------ELTGRVYQRPPRRSAVK 108
Query: 149 KPTYMKS--NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGI 206
+ +++ +L D ++ ++C AGTY+R+ C H+GLVLGVG M ELRR RSG
Sbjct: 109 RALRIRTIQDLTVLDQQGRLVLLRIRCDAGTYIRSLCHHLGLVLGVGGHMQELRRTRSGT 168
Query: 207 QSE 209
E
Sbjct: 169 FDE 171
>gi|448565614|ref|ZP_21636481.1| H/ACA RNA-protein complex component Cbf5p [Haloferax prahovense DSM
18310]
gi|445715358|gb|ELZ67114.1| H/ACA RNA-protein complex component Cbf5p [Haloferax prahovense DSM
18310]
Length = 289
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 37/207 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEDRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREVYDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG G M LRR + + D LVT
Sbjct: 161 LGTGGHMGHLRRTATTPFDDAD-LVTL 186
>gi|448415661|ref|ZP_21578316.1| H/ACA RNA-protein complex component Cbf5p [Halosarcina pallida JCM
14848]
gi|445680362|gb|ELZ32809.1| H/ACA RNA-protein complex component Cbf5p [Halosarcina pallida JCM
14848]
Length = 290
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R+++ + G VNLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL +
Sbjct: 8 PDDRSLEALLSFGVVNLDKPPGPSAHQVAAWVRDMTGVERAAHAGTLDPKVTGCLPTLLG 67
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH + S + ++ + + + KP + S
Sbjct: 68 DATRMAQVFLEGSKEYVSVLELHGSA-----PSDLEAVVAEFEGEVYQKPPRKSAVSRRL 122
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ Y +L +V ++ ++C++GTY+R C +GL G GA M LR
Sbjct: 123 ------RSREVY---DLDVLEVADRQALLRIRCESGTYIRKLCHDVGLAAGTGAHMGHLR 173
Query: 201 RN 202
R
Sbjct: 174 RT 175
>gi|88603514|ref|YP_503692.1| pseudouridylate synthase [Methanospirillum hungatei JF-1]
gi|88188976|gb|ABD41973.1| tRNA pseudouridine synthase B [Methanospirillum hungatei JF-1]
Length = 310
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 13/177 (7%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK 94
+ +DKP PSSH+V AW++ I GH+GTLDP SG L++ + RA RL K
Sbjct: 19 ILIDKPRGPSSHQVAAWVREITGVSSVGHTGTLDPPVSGVLVILLGRAVRLTTILHQDDK 78
Query: 95 EYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK 154
EY+++ +L V + A +I+ + +P + + + +
Sbjct: 79 EYVALLRLQGDVSDAELAE----VIEHFTGRIYQRPPKRSAVKRALRIREIHELEMLGRD 134
Query: 155 SNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
L+ + +KC +GTY+R+ C H+G+ GVG M+ELRR RSG SE+D
Sbjct: 135 GRLV---------LFRVKCDSGTYIRSLCHHIGMACGVGGAMVELRRTRSGPFSEKD 182
>gi|433435459|ref|ZP_20408119.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. BAB2207]
gi|432192359|gb|ELK49244.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. BAB2207]
Length = 289
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIHDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEED 211
LG G M LRR + + D
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD 182
>gi|448592874|ref|ZP_21651921.1| H/ACA RNA-protein complex component Cbf5p [Haloferax elongans ATCC
BAA-1513]
gi|445730900|gb|ELZ82487.1| H/ACA RNA-protein complex component Cbf5p [Haloferax elongans ATCC
BAA-1513]
Length = 289
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL + +
Sbjct: 6 PEDRSLDALLSFGVVNLDKPPGPSAHQVTGWVRDMADLDRAAHSGTLDPKVTGCLPILLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH A A E+T A + +
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGP----APADI-----------------ESTVAEFES 104
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
+L P +K + +L +V ++ ++C++GTY+R C +GL LG G
Sbjct: 105 KLYQKPPRKSAVSRRLRVREIYDLDLLEVNDRQALLRIRCESGTYIRKLCHDIGLALGTG 164
Query: 194 AQMIELRRN 202
M LRR
Sbjct: 165 GHMGHLRRT 173
>gi|448610556|ref|ZP_21661231.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mucosum ATCC
BAA-1512]
gi|445744648|gb|ELZ96121.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mucosum ATCC
BAA-1512]
Length = 289
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 28/189 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL + +
Sbjct: 6 PEDRSVGDLLSFGVVNLDKPPGPSAHQVTGWVRDMAGLDRAAHSGTLDPKVTGCLPILLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH A A E T A +
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGP----APADI-----------------ETTVAEFET 104
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
+L P +K + +L +V ++ ++C++GTY+R C +GL LG G
Sbjct: 105 KLYQKPPRKSAVSRRLRVREIYDLDLLEVQDRQALLCIRCESGTYIRKLCHDLGLALGTG 164
Query: 194 AQMIELRRN 202
M LRR
Sbjct: 165 GHMGHLRRT 173
>gi|354610502|ref|ZP_09028458.1| tRNA pseudouridine synthase B [Halobacterium sp. DL1]
gi|353195322|gb|EHB60824.1| tRNA pseudouridine synthase B [Halobacterium sp. DL1]
Length = 296
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 45/220 (20%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCI 79
+P R + + G +NLDKP PS+H+V AW++ + EK H+GTLDPK +GCL +
Sbjct: 5 APEDRDPEAILEFGVLNLDKPPGPSAHQVSAWVRDMTGVEKAAHAGTLDPKVTGCLPILT 64
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
ATRL + KEY+++ +LH+ P N S +
Sbjct: 65 GAATRLAPALLEGPKEYVTVLELHA------------------------DPPANL-ESVV 99
Query: 140 AELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
AE E +KP + +L +V ++ ++C++GTYVR C +G
Sbjct: 100 AEFEGPTYQKPPRKSAVARRLRVREIYDLDVLEVENRQALLRIRCESGTYVRKLCHDLGR 159
Query: 189 VLGVGAQMIELRRNRS---------GIQSEEDGLVTFRQE 219
LG GA M LRR + +Q D L +R E
Sbjct: 160 ALGTGAHMGHLRRTATTPFDDTDLVTLQDLSDALAWYRDE 199
>gi|327311510|ref|YP_004338407.1| H/ACA RNA-protein complex component Cbf5p [Thermoproteus uzoniensis
768-20]
gi|326947989|gb|AEA13095.1| H/ACA RNA-protein complex component Cbf5p [Thermoproteus uzoniensis
768-20]
Length = 334
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 10 NHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDP 69
N T +GKSP R ++E+IR V LDKP PSSHE VAW+K+IL + GHSGTLDP
Sbjct: 14 NEQTDPRWGKSPGDRPVEEHIRYSLVILDKPRGPSSHEAVAWLKKILGVDVAGHSGTLDP 73
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
SG L V + T+++ + A K Y+++ K H V+ + +K L G+
Sbjct: 74 NVSGVLPVAVAEGTKVLMALSRADKVYVAVAKFHGDVD--------EERLKSVLARFTGE 125
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
+ P A + T +L ++ ++ + +AGTY R +G V
Sbjct: 126 IYQRPPLR-----SAVKRQLRTRRVYSLELLELDGRYAVLRMHVEAGTYARKLIHDIGEV 180
Query: 190 LGVGAQMIELRR 201
LGV A M ELRR
Sbjct: 181 LGVSANMRELRR 192
>gi|397780808|ref|YP_006545281.1| tRNA pseudouridine synthase B [Methanoculleus bourgensis MS2]
gi|396939310|emb|CCJ36565.1| tRNA pseudouridine synthase B [Methanoculleus bourgensis MS2]
Length = 306
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP PSSH+V AW+ IL + GH+GTLDP+ SG L+V A RL S
Sbjct: 12 SGIVVIDKPRGPSSHQVTAWVGDIL-GRRVGHAGTLDPQVSGVLVVMFGGAVRLAPVLLS 70
Query: 92 AGKEYISIFKLHS-----AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
KEY+ + +LH AV+ VA+ ++ + + N + E+E
Sbjct: 71 HNKEYVCLMRLHGDVSREAVDRVAEEFVGRVYQRP---PRKSAVKRNLRIRKIQEIEV-- 125
Query: 147 NKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
M+ L+ + ++C AGTY+RT CVHMG LGV A M ELRR RSG
Sbjct: 126 ----LDMEGRLV---------LFRVRCDAGTYIRTLCVHMGYTLGVCAHMQELRRIRSG 171
>gi|399576888|ref|ZP_10770643.1| tRNA pseudouridine synthase b [Halogranum salarium B-1]
gi|399238332|gb|EJN59261.1| tRNA pseudouridine synthase b [Halogranum salarium B-1]
Length = 288
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + E + G VNLDKP PS+H+V W++ + E+ H+GTLDPK +GCL +
Sbjct: 5 PAERDVDELLDFGVVNLDKPPGPSAHQVSGWVRDLAGVEQAAHAGTLDPKVTGCLPTLLG 64
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK-QGLLDKHGKPNENTPASYL 139
ATRL + KEY+++ +LH A A +++ + +G L + KP + S
Sbjct: 65 DATRLAQVFLEGTKEYVAVLELHGP----APADLDRVVSEFEGEL--YQKPPRKSAVS-- 116
Query: 140 AELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIEL 199
+ T L +V ++ + C++GTY+R C +GL LG G M L
Sbjct: 117 -------RRLRTRTIYGLDVLEVKDRKVLLRIDCESGTYIRKLCHDIGLALGTGGHMGHL 169
Query: 200 RRNRS 204
RR R+
Sbjct: 170 RRTRT 174
>gi|448569295|ref|ZP_21638555.1| H/ACA RNA-protein complex component Cbf5p [Haloferax lucentense DSM
14919]
gi|445724428|gb|ELZ76060.1| H/ACA RNA-protein complex component Cbf5p [Haloferax lucentense DSM
14919]
Length = 289
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVADLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PAPADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIHDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEED 211
LG G M LRR + + D
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD 182
>gi|292656614|ref|YP_003536511.1| tRNA pseudouridine synthase B [Haloferax volcanii DS2]
gi|448290617|ref|ZP_21481764.1| H/ACA RNA-protein complex component Cbf5p [Haloferax volcanii DS2]
gi|291370953|gb|ADE03180.1| tRNA pseudouridine synthase B [Haloferax volcanii DS2]
gi|445578229|gb|ELY32640.1| H/ACA RNA-protein complex component Cbf5p [Haloferax volcanii DS2]
Length = 289
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL +
Sbjct: 6 PEHRSVGDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH P S +A
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG-------------------------PASADIDSTVA 100
Query: 141 ELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E E+ +KP + +L +V ++ ++C++GTY+R C +GL
Sbjct: 101 EFESKLYQKPPRKSAVSRRLRVREIHDLDLLEVKDRQALLRIRCESGTYIRKLCHDLGLA 160
Query: 190 LGVGAQMIELRRNRSGIQSEED 211
LG G M LRR + + D
Sbjct: 161 LGTGGHMGHLRRTATDPFDDAD 182
>gi|257076587|ref|ZP_05570948.1| H/ACA RNA-protein complex component Cbf5p [Ferroplasma acidarmanus
fer1]
Length = 351
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 17/175 (9%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP P+SH++ AW++ I ++ GH GTLDP SG L++ + +AT+L+
Sbjct: 13 GFIVIDKPKGPTSHQIDAWVREITGEKRVGHIGTLDPNVSGVLVMALGKATKLIDIVHER 72
Query: 93 GKEYISIFKLHSAVE--NVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KEYIS+ +L+S + N+ K K+ GK + P + ++
Sbjct: 73 PKEYISVMRLYSTADTDNIMKVFKEFT----------GKIYQLPPVRSAVSRQV--RERT 120
Query: 151 TYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
Y N+ ++ + +KC++GTY+RT C MG V+G GAQM +LRR +G
Sbjct: 121 IY---NMDVLEIQEKLILFRVKCESGTYIRTLCTDMGYVIGTGAQMADLRRLSTG 172
>gi|448431202|ref|ZP_21584973.1| H/ACA RNA-protein complex component Cbf5p, partial [Halorubrum
tebenquichense DSM 14210]
gi|445688138|gb|ELZ40405.1| H/ACA RNA-protein complex component Cbf5p, partial [Halorubrum
tebenquichense DSM 14210]
Length = 335
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 21 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGGVAH 80
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ +LH + + + ++ +
Sbjct: 81 SGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLELHG-----SPPADFREVVAEFE 135
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ + KP + S + T +L DV ++ ++C++GTYVR C
Sbjct: 136 SEIYQKPPRKSAVS---------RRLRTRTVHDLDVLDVADRKALLRIRCESGTYVRKLC 186
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEED 211
+GL GVGA M LRR + + D
Sbjct: 187 HDVGLATGVGAHMGHLRRTATDPFDDRD 214
>gi|448534361|ref|ZP_21621689.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum hochstenium
ATCC 700873]
gi|445704843|gb|ELZ56750.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum hochstenium
ATCC 700873]
Length = 347
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 101/222 (45%), Gaps = 54/222 (24%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AWI+ + TG H
Sbjct: 33 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWIRDAIDETLAALDPEGPPTGGVAH 92
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ +L
Sbjct: 93 SGTLDPKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLEL--------------------- 131
Query: 124 LDKHGKPNENTPASY---LAELEAAPNKKP-----------TYMKSNLISSDVTLSTGII 169
HG P PA + +AE E+ +KP T +L +V +I
Sbjct: 132 ---HGSP----PADFREVVAEFESEIYQKPPRKSAVSRRLRTRTVHDLDVLEVADRKALI 184
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++C++GTYVR C +GL GVGA M LRR + + D
Sbjct: 185 RVRCESGTYVRKLCHDLGLATGVGAHMGHLRRTATDPFDDRD 226
>gi|448578102|ref|ZP_21643537.1| H/ACA RNA-protein complex component Cbf5p [Haloferax larsenii JCM
13917]
gi|445726643|gb|ELZ78259.1| H/ACA RNA-protein complex component Cbf5p [Haloferax larsenii JCM
13917]
Length = 289
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL + +
Sbjct: 6 PENRSLDALLSFGVVNLDKPPGPSAHQVTGWVRDMADLDRAAHSGTLDPKVTGCLPILLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+S+ +LH A A E+T A + +
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGP----APADI-----------------ESTVAEFES 104
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
+L P +K + +L +V ++ ++C++GTY+R C +GL LG G
Sbjct: 105 KLYQKPPRKSAVSRRLRVREIYDLDLLEVKDRQALLRIRCESGTYIRKLCHDIGLALGTG 164
Query: 194 AQMIELRRN 202
M LRR
Sbjct: 165 GHMGHLRRT 173
>gi|55379888|ref|YP_137738.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula marismortui
ATCC 43049]
gi|62901221|sp|Q5UXH1.1|TRUB_HALMA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|55232613|gb|AAV48032.1| tRNA pseudouridine synthase B [Haloarcula marismortui ATCC 43049]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 14 PLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSG 73
P+ P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +G
Sbjct: 18 PMTLRAPPDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTG 77
Query: 74 CLIVCIDRATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNE 132
CL V + A R+ + +A KEY+++ +LH A ++A ++ + D + KP
Sbjct: 78 CLPVLLGDAARMAQVFDNAVKEYVTVLELHDQAPADIAD------IVAEFETDIYQKP-- 129
Query: 133 NTPASYLAELEAAPNKKPT--YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHM 186
P K ++S I S L G ++ ++C +GTY+R C +
Sbjct: 130 -------------PRKSAVKRQLRSRRIHSLDILEQGDRRLLLRVRCASGTYIRKLCHDI 176
Query: 187 GLVLGVGAQMIELRRNRSG 205
GL G GA M +LRR +G
Sbjct: 177 GLAAGTGAHMGDLRRTATG 195
>gi|41615239|ref|NP_963737.1| H/ACA RNA-protein complex component Cbf5p [Nanoarchaeum equitans
Kin4-M]
gi|42559714|sp|P60346.1|TRUB_NANEQ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|40068963|gb|AAR39298.1| NEQ454 [Nanoarchaeum equitans Kin4-M]
Length = 348
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 23/218 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G+ P R I+ ++ +NLDKPS P+SH+VVAW++ I+ K GH GTLDPK +G L
Sbjct: 43 WGEDPYNRPIERLLKYSVINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLP 101
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ I AT+++++ AGKEY+++ LH V +K +IK ++ K TP
Sbjct: 102 IAIGEATKVLQTLLIAGKEYVALMHLHKEVS-------EKDIIK--VMSKFVGTIIQTPP 152
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
A + KK +K I L + Q G Y+R +G+ LGVGA M
Sbjct: 153 LRSAVKKRPRKKKVYCIKIIEIDGKDVLFR----VSTQGGVYIRKLIHDIGVKLGVGAHM 208
Query: 197 IELRRNRSG---------IQSEEDGLVTFRQEHMFEHI 225
ELRR +SG +Q D L +++E E+I
Sbjct: 209 QELRRIKSGPFHENNSVYLQDIVDSLYFWKEEGNEEYI 246
>gi|150399736|ref|YP_001323503.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus vannielii
SB]
gi|150012439|gb|ABR54891.1| putative rRNA pseudouridine synthase [Methanococcus vannielii SB]
Length = 359
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 15/211 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T G P +R I+ + G V +DKPS P+SHEV AW++ +L+ EK GH
Sbjct: 4 ELIVKEESKTNYEHGCEPYKRDIKTLLNTGVVVIDKPSGPTSHEVSAWVRNMLKLEKAGH 63
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L + + AT+ V KEY+ + +LH K IK+
Sbjct: 64 GGTLDPKVTGALPIALGGATKCVSIWHIPPKEYVCLMQLHD--------DAKLEDIKRVF 115
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
+ G+ ++ P L+AA + K I +++ +CQ+GTY+RT
Sbjct: 116 NEFTGRIHQRPP------LKAAVKRNLRIRKIYEIEILEHFERKVLFKTRCQSGTYIRTL 169
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG A M ELRR SG +E + +
Sbjct: 170 VSDVGEALGTSAHMQELRRTISGPFNENEAV 200
>gi|448679123|ref|ZP_21689960.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula argentinensis
DSM 12282]
gi|445771221|gb|EMA22278.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula argentinensis
DSM 12282]
Length = 296
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V +
Sbjct: 7 PDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
A R+ + SA KEY+++ +LH A ++A ++ + D + KP
Sbjct: 67 DAARMAQVFDSAVKEYVTVLELHDQAPADIAD------IVAEFETDIYQKP--------- 111
Query: 140 AELEAAPNKKPT--YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
P K ++S I S L G ++ ++C +GTY+R C +GL G G
Sbjct: 112 ------PRKSAVKRQLRSRRIHSLDILEQGERRLLLRVQCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|448491321|ref|ZP_21608262.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum
californiensis DSM 19288]
gi|445693092|gb|ELZ45254.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum
californiensis DSM 19288]
Length = 338
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 39/217 (17%)
Query: 16 PFGKSPL-----QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKT 61
P G+SPL +R++ E +R G VNLDKP+ PSSH+V AW++ + + T
Sbjct: 13 PDGESPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGQPT 72
Query: 62 G---HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA----VENVAKASK 114
G HSGTLDPK +GCL ATR+ + KEY+++ +LH + +V A +
Sbjct: 73 GGVAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLELHGSPPTDFRDVVAAFE 132
Query: 115 KKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQ 174
++ + KP + S + T +L +V ++ ++C+
Sbjct: 133 SEI---------YQKPPRKSAVS---------RRLRTRTIHHLDVLEVADRRALLRIRCE 174
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
+GTYVR C +GL GVGA M LRR + + D
Sbjct: 175 SGTYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 211
>gi|126178488|ref|YP_001046453.1| pseudouridylate synthase [Methanoculleus marisnigri JR1]
gi|125861282|gb|ABN56471.1| tRNA pseudouridine synthase B [Methanoculleus marisnigri JR1]
Length = 302
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 33/196 (16%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP PSSH+V AW+ IL + GH+GTLDP+ SG LIV A RL S
Sbjct: 11 SGIVVVDKPRGPSSHQVAAWVGGIL-GRRVGHAGTLDPQVSGVLIVMFGGAVRLAPVLLS 69
Query: 92 AGKEYISIFKLH--SAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
KEY+ + +LH ++ E+V +A+K+ + + P +K
Sbjct: 70 HNKEYVCLMRLHGDASRESVEQAAKE----------------------FTGRIYQRPPRK 107
Query: 150 PTYMKSNLISS-------DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
+S I D+ + ++C AGTY+RT CVH+G LG A M ELRR
Sbjct: 108 SAVKRSLRIRKIQEIEILDMDGRLVLFRVRCDAGTYIRTLCVHLGYALGTCAHMEELRRI 167
Query: 203 RSGIQSEEDGLVTFRQ 218
RSG +E +VT +
Sbjct: 168 RSG-SFDETTIVTLHE 182
>gi|448453323|ref|ZP_21593766.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum litoreum JCM
13561]
gi|445807643|gb|EMA57726.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum litoreum JCM
13561]
Length = 326
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 54/222 (24%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 18 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGGVAH 77
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ ++H
Sbjct: 78 SGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHG------------------- 118
Query: 124 LDKHGKPNENTPASY---LAELEAAPNKKP-----------TYMKSNLISSDVTLSTGII 169
+TPA + +AE E+ +KP T +L +V +I
Sbjct: 119 ---------STPADFEDVVAEFESEIYQKPPRKSAVSRRLRTRTIHDLDVLEVDDRQALI 169
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++C++GTYVR C +GL GVGA M LRR + + D
Sbjct: 170 RIRCESGTYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 211
>gi|13541183|ref|NP_110871.1| H/ACA RNA-protein complex component Cbf5p [Thermoplasma volcanium
GSS1]
gi|37089629|sp|Q97BU9.1|TRUB_THEVO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|14324571|dbj|BAB59498.1| centromere/microtubule-binding protein [Thermoplasma volcanium
GSS1]
Length = 353
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 23/183 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP P+SH+V W+++IL EK GH GTLDP +G L++ I +A RL+
Sbjct: 10 GFIVIDKPQGPTSHQVDYWVRQILGTEKVGHIGTLDPNVTGVLVMAIGKAVRLIDVVHEK 69
Query: 93 GKEYISIFKLHSAV--ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK- 149
KEY+ + + HS + E V + +K T L + +A ++K
Sbjct: 70 PKEYVGVMRFHSDISEEEVREVFRKF----------------TTRIYQLPPVRSAVSRKV 113
Query: 150 --PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQ 207
T + ++I + + +KC++GTY+RT C +G V G G QM++LRR +G
Sbjct: 114 RIKTIYELDMIEKKDKIV--LFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRISTGPF 171
Query: 208 SEE 210
E+
Sbjct: 172 KED 174
>gi|389847937|ref|YP_006350176.1| tRNA pseudouridine synthase B [Haloferax mediterranei ATCC 33500]
gi|448618039|ref|ZP_21666384.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mediterranei
ATCC 33500]
gi|388245243|gb|AFK20189.1| tRNA pseudouridine synthase B [Haloferax mediterranei ATCC 33500]
gi|445747594|gb|ELZ99049.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mediterranei
ATCC 33500]
Length = 289
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 28/189 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R++ + + G VNLDKP PS+H+V W++ + ++ HSGTLDPK +GCL + +
Sbjct: 6 PEDRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMAGLDRAAHSGTLDPKVTGCLPILLG 65
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
AT + + KEY+S+ +LH A A E+T A +
Sbjct: 66 DATGMAQVFLEGSKEYVSVLELHGP----APADI-----------------ESTVAEFET 104
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
+L P +K + +L +V ++ ++C++GTY+R C +GL LG G
Sbjct: 105 KLYQKPPRKSAVSRRLRVREIYDLDLLEVQDRQALLRIRCESGTYIRKLCHDLGLALGTG 164
Query: 194 AQMIELRRN 202
M LRR
Sbjct: 165 GHMGHLRRT 173
>gi|45359249|ref|NP_988806.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis S2]
gi|62901318|sp|Q6LWM3.1|TRUB_METMP RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|45048124|emb|CAF31242.1| pseudouridine syntase related protein [Methanococcus maripaludis
S2]
Length = 333
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 13/202 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH E V I+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDDAELVD--------IENIF 113
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ G+ ++ P + K + D+ T KCQ+GTY+R
Sbjct: 114 KEFTGRIHQRPPLKAAVKRSLRIRKIYEIEILEIDGRDILFRT-----KCQSGTYLRKLV 168
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 169 DDMGEALGTSAHMQELRRTISG 190
>gi|119874613|gb|ABM05783.1| dyskerin [Strigamia maritima]
Length = 223
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
QSAGKEY++IF LHS +N+ K I Q L G + P L +
Sbjct: 1 QSAGKEYVTIFALHSPFDNLKK-------IHQTLESLTGAVFQRPP---LISAVKRQLRI 50
Query: 150 PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSE 209
T ++ ++ D GIIW+ C+AGTYVRT CVH+GL+LGVG QM ELRR RSGIQ E
Sbjct: 51 RTIYEAKMLEYDKEKGLGIIWMSCEAGTYVRTLCVHLGLMLGVGGQMAELRRVRSGIQDE 110
Query: 210 EDGLVTF 216
+ G+VT
Sbjct: 111 KSGMVTM 117
>gi|340624999|ref|YP_004743452.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis X1]
gi|339905267|gb|AEK20709.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis X1]
Length = 333
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 13/202 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH E V I+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDDAELVD--------IENIF 113
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ G+ ++ P + K + D+ T KCQ+GTY+R
Sbjct: 114 KEFTGRIHQRPPLKAAVKRSLRIRKIYEIEILEIDGRDILFRT-----KCQSGTYLRKLV 168
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 169 DDMGEALGTSAHMQELRRTISG 190
>gi|374724505|gb|EHR76585.1| tRNA pseudouridine synthase b [uncultured marine group II
euryarchaeote]
Length = 322
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 18 GKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIV 77
G +P RT+++ + G++ LDKP+ P+SH+V AW + + E+ GH GTLDP +G L +
Sbjct: 17 GTAPDDRTVEQRLAGGFILLDKPAGPTSHQVAAWARDLFGLERLGHGGTLDPFATGVLPL 76
Query: 78 CIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPAS 137
+A ++ K + K YI +F+ S V+ A + + + G+ P
Sbjct: 77 MAGKAMKVTKKILNHKKSYICVFRFASEVDEDA--------LNKAMRQLTGRVYNVPPEV 128
Query: 138 YLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMI 197
+++ K ++ + + +D+ I + C+AGTY+RT +GL+L + Q+
Sbjct: 129 SAVKVQVRTRKIFSFEQLDRSGNDM-----IARVHCEAGTYIRTMARDLGLLLNMKIQLK 183
Query: 198 ELRRNRSGIQSEED 211
ELRR+ SG+ + +D
Sbjct: 184 ELRRDISGVFTLDD 197
>gi|448485433|ref|ZP_21606658.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum arcis JCM
13916]
gi|445818087|gb|EMA67954.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum arcis JCM
13916]
Length = 326
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 40/215 (18%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 18 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGGVAH 77
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ ++H + A A
Sbjct: 78 SGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHGS----APAD---------- 123
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAG 176
E+ A + +E+ P +K + +L +V +I ++C++G
Sbjct: 124 -------FEDVVAEFESEIYQKPPRKSAVSRRLRTRTIHDLDVLEVDDRQALIRIRCESG 176
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
TYVR C +GL GVGA M LRR + + D
Sbjct: 177 TYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 211
>gi|448654558|ref|ZP_21681484.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula californiae
ATCC 33799]
gi|445766406|gb|EMA17533.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula californiae
ATCC 33799]
Length = 296
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V +
Sbjct: 7 PDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
A R+ + +A KEY+++ +LH A ++A ++ + D + KP
Sbjct: 67 DAARMAQVFDNAVKEYVTVLELHDQAPADIAD------IVTEFETDIYQKP--------- 111
Query: 140 AELEAAPNKKPT--YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
P K ++S I S L G ++ ++C +GTY+R C +GL G G
Sbjct: 112 ------PRKSAVKRQLRSRRIHSLDILEQGDRRLLLRVRCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|448641087|ref|ZP_21677874.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula sinaiiensis
ATCC 33800]
gi|445761612|gb|EMA12860.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula sinaiiensis
ATCC 33800]
Length = 296
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V +
Sbjct: 7 PDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
A R+ + +A KEY+++ +LH A ++A ++ + D + KP
Sbjct: 67 DAARMAQVFDNAVKEYVTVLELHGQAPADIAD------IVAEFETDIYQKP--------- 111
Query: 140 AELEAAPNKKPT--YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
P K ++S I S L G ++ ++C +GTY+R C +GL G G
Sbjct: 112 ------PRKSAVKRQLRSRRIHSLDILEQGDRRLLLRVRCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|448427649|ref|ZP_21583964.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum terrestre JCM
10247]
gi|445678336|gb|ELZ30830.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum terrestre JCM
10247]
Length = 326
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 101/222 (45%), Gaps = 54/222 (24%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 18 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGGVAH 77
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ +LH
Sbjct: 78 SGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLELH-------------------- 117
Query: 124 LDKHGKPNENTPASY---LAELEAAPNKKP-----------TYMKSNLISSDVTLSTGII 169
G P PA + +AE E+ +KP T +L +V +I
Sbjct: 118 ----GSP----PADFRDVVAEFESEIYQKPPRKSAVSRRLRTRTIHDLDVLEVDDRQALI 169
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++C++GTY+R C +GL GVGA M LRR + + D
Sbjct: 170 RIRCESGTYIRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 211
>gi|344210874|ref|YP_004795194.1| H/ACA RNA-protein complex component Cbf5p/tRNA pseudouridine
synthase B [Haloarcula hispanica ATCC 33960]
gi|343782229|gb|AEM56206.1| H/ACA RNA-protein complex component Cbf5p / tRNA pseudouridine
synthase B [Haloarcula hispanica ATCC 33960]
Length = 296
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V +
Sbjct: 7 PGERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRNATDQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
A R+ + A KEY+++ +LH + A A ++ A +
Sbjct: 67 DAARMAQVFDDAVKEYVTVLELH----DQAPADIADIV-----------------AEFET 105
Query: 141 ELEAAPNKKPTY---MKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P +K +++ I S L G ++ ++C +GTY+R C +GL G G
Sbjct: 106 EVYQKPPRKSAVKRQLRARRIHSLDILEQGERRLLLRVRCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|448504662|ref|ZP_21614003.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 9100]
gi|448519103|ref|ZP_21617879.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 10118]
gi|445701872|gb|ELZ53844.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 9100]
gi|445704119|gb|ELZ56037.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 10118]
Length = 326
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 40/215 (18%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 18 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGGVAH 77
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ ++H + A A
Sbjct: 78 SGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHGS----APAD---------- 123
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAG 176
E+ A + +E+ P +K + +L +V +I ++C++G
Sbjct: 124 -------FEDVVAEFESEIYQKPPRKSAVSRRLRTRTIHDLDVLEVDDRQALIRIRCESG 176
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
TYVR C +GL GVGA M LRR + + D
Sbjct: 177 TYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 211
>gi|448465610|ref|ZP_21598876.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum kocurii JCM
14978]
gi|445814942|gb|EMA64890.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum kocurii JCM
14978]
Length = 330
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 54/222 (24%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL------------RCEKTGH 63
P P +R++ E +R G VN+DKP+ PSSH++ AW++ + + H
Sbjct: 21 PLRSPPGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAVNETLATLDPDGPQIAGVAH 80
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL ATR + GKEY+S+ +LH
Sbjct: 81 AGTLDPKVTGCLPTLTGDATRAAQVFLEGGKEYVSVLELH-------------------- 120
Query: 124 LDKHGKPNENTPASY---LAELEAAPNKKPTY-------MKSNLISS----DVTLSTGII 169
G P PA + +AE EA +KP +++ I + +V ++
Sbjct: 121 ----GSP----PADFRDVVAEFEAEIYQKPPRKSAVTRRLRTRTIHALDVLEVDDRQALL 172
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++C++GTYVR C +GL GVGA M LRR + + D
Sbjct: 173 RIRCESGTYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 214
>gi|150402885|ref|YP_001330179.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C7]
gi|189036540|sp|A6VHV2.1|TRUB_METM7 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|150033915|gb|ABR66028.1| putative rRNA pseudouridine synthase [Methanococcus maripaludis C7]
Length = 333
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P +R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKLEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>gi|448377694|ref|ZP_21560390.1| H/ACA RNA-protein complex component Cbf5p [Halovivax asiaticus JCM
14624]
gi|445655638|gb|ELZ08483.1| H/ACA RNA-protein complex component Cbf5p [Halovivax asiaticus JCM
14624]
Length = 312
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 46/212 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL--RCEKTGH--------SGTLDPK 70
P R+I + G VNLDKPS PSSH+V AWI+ + R + GH +GTLDPK
Sbjct: 7 PDDRSIASLLSFGVVNLDKPSGPSSHQVSAWIRDAVDDRLAEAGHDPIGRAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
+GCL V + ATRL + KEYI++ + H V +
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYIAVLECHGPVPTDVE------------------- 107
Query: 131 NENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYV 179
S LAE E +KP + ++ + ++ ++ ++C++GTYV
Sbjct: 108 ------STLAEFEGPIYQKPPRKSAVSRRLRVREIYDIDALEIEDRRVLLRIRCESGTYV 161
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
R C +GL LG GA M +LRR + + D
Sbjct: 162 RKLCHDLGLALGTGAHMGDLRRTATDPFDDRD 193
>gi|134046746|ref|YP_001098231.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C5]
gi|189036539|sp|A4G0N3.1|TRUB_METM5 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|132664371|gb|ABO36017.1| tRNA pseudouridine synthase B [Methanococcus maripaludis C5]
Length = 333
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 95/203 (46%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKVEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>gi|159905370|ref|YP_001549032.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C6]
gi|226708670|sp|A9A8X7.1|TRUB_METM6 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|159886863|gb|ABX01800.1| rRNA pseudouridine synthase [Methanococcus maripaludis C6]
Length = 333
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P +R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKLEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>gi|435848714|ref|YP_007310964.1| tRNA pseudouridine synthase B [Natronococcus occultus SP4]
gi|433674982|gb|AGB39174.1| tRNA pseudouridine synthase B [Natronococcus occultus SP4]
Length = 300
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 24/192 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR----------CEKTGHSGTLDPK 70
P +R+ E +R G VNLDKP PSSH+V W++ + ++ H+GTLDPK
Sbjct: 7 PEERSPAELLRFGVVNLDKPPGPSSHQVSGWLRDEVADALAERGAEPIDQAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
+GCL V + ATRL ++ KEY+++ + H +V A + + +G + + KP
Sbjct: 67 VTGCLPVMLGDATRLAQTFLEGDKEYVAVLECHGSVPEDADSIVAEF---EGPI--YQKP 121
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
+ S + Y L + D L ++ ++C++GTYVR C +GL L
Sbjct: 122 PRKSAVSRRL------RTREIYALDVLEAEDRRL---LLRIRCESGTYVRKLCHDLGLAL 172
Query: 191 GVGAQMIELRRN 202
G GA M LRR
Sbjct: 173 GTGAHMGHLRRT 184
>gi|169236401|ref|YP_001689601.1| H/ACA RNA-protein complex component Cbf5p [Halobacterium salinarum
R1]
gi|13959593|sp|Q9HPA4.1|TRUB_HALSA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|226708668|sp|B0R686.1|TRUB_HALS3 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|10581191|gb|AAG19966.1| tRNA-pseudouridine synthase [Halobacterium sp. NRC-1]
gi|167727467|emb|CAP14255.1| tRNA/rRNA pseudouridine synthase Cbf5 [Halobacterium salinarum R1]
Length = 301
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R+ + G VNLDKP PS+H+V AWI+ ++ EK H+GTLDPK +GCL V
Sbjct: 7 PGERSPAAVLSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+++ +LH D + + ++
Sbjct: 67 TATRIAPALLEGFKEYVAVLELH---------------------DDPPRILPDVIEAFTG 105
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK + +L DV ++ ++C++GTY+R C +G LG
Sbjct: 106 EIYQKPPKKSAVARRLRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALGTN 165
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
A M LRR+ + + D LVT
Sbjct: 166 AHMGHLRRSATTPFDDTD-LVTL 187
>gi|150401644|ref|YP_001325410.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus aeolicus
Nankai-3]
gi|189036538|sp|A6UWC6.1|TRUB_META3 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|150014347|gb|ABR56798.1| putative rRNA pseudouridine synthase [Methanococcus aeolicus
Nankai-3]
Length = 331
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 13 TPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTS 72
T +G P R I E ++ G V +DKPS P+SHEV AW++ IL+ + GH GTLDPK +
Sbjct: 11 TNYEYGCDPYNRPIGELLKNGIVVIDKPSGPTSHEVSAWVRDILKLKLAGHGGTLDPKVT 70
Query: 73 GCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIKQGLLDKHGKP 130
G L V ++ ++ + KEY+ + LH + E + K KK G+
Sbjct: 71 GVLPVALENTSKCISVWHMIPKEYVCLMHLHRDTEEEELLKIFKKFT----------GRI 120
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
+ P A ++ + + Y + L+ D + ++CQ+GTY+RT MG L
Sbjct: 121 FQRPPLK--AAVKRSLRIRKIY-ELELLEKDG--RDVLFRVRCQSGTYIRTLAEDMGEAL 175
Query: 191 GVGAQMIELRRNRSGIQSEED 211
G A M ELRR SG +E+D
Sbjct: 176 GTSAHMQELRRIVSGPFTEKD 196
>gi|161349979|ref|NP_280486.2| H/ACA RNA-protein complex component Cbf5p [Halobacterium sp. NRC-1]
Length = 310
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R+ + G VNLDKP PS+H+V AWI+ ++ EK H+GTLDPK +GCL V
Sbjct: 16 PGERSPAAVLSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTG 75
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+++ +LH D + + ++
Sbjct: 76 TATRIAPALLEGFKEYVAVLELH---------------------DDPPRILPDVIEAFTG 114
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK + +L DV ++ ++C++GTY+R C +G LG
Sbjct: 115 EIYQKPPKKSAVARRLRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALGTN 174
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
A M LRR+ + + D LVT
Sbjct: 175 AHMGHLRRSATTPFDDTD-LVTL 196
>gi|448474342|ref|ZP_21602201.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum aidingense
JCM 13560]
gi|445817649|gb|EMA67518.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum aidingense
JCM 13560]
Length = 327
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 92/210 (43%), Gaps = 48/210 (22%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR------------CEKTGH 63
P P +R++ E +R G VN+DKP+ PSSH++ AW++ + + H
Sbjct: 12 PLRAPPGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRNAINETLAALDPDGEAIDGVAH 71
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL ATR + GKEY+S+ +LH
Sbjct: 72 AGTLDPKVTGCLPTLTGDATRAAQVFLEGGKEYVSVLELHG------------------- 112
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKP-----------TYMKSNLISSDVTLSTGIIWLK 172
P S AE EA +KP T +L +V ++ +
Sbjct: 113 ------PAPTDFRSVAAEFEAEIYQKPPRKSAVTRRLRTRTIHDLDVLEVEERRALLRIG 166
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
C++GTY+R C +GL GVGA M LRR
Sbjct: 167 CESGTYIRKLCHDIGLATGVGAHMGHLRRT 196
>gi|76803088|ref|YP_331183.1| H/ACA RNA-protein complex component Cbf5p [Natronomonas pharaonis
DSM 2160]
gi|76558953|emb|CAI50549.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas pharaonis DSM
2160]
Length = 292
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R + + G +NLDKP PS+H+V AW++ + E+ H+GTLDPK +GCL V
Sbjct: 7 PADRDPETLLEFGVINLDKPPGPSAHQVAAWVRDMAGVEQAAHAGTLDPKVTGCLPVLTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR + + K Y+++ +LH + +++ + +G L + P ++ A L
Sbjct: 67 TATRAAQVFDESRKGYVAVLELHGTAPSDLESTVAEF---EGPLYQK-PPRKSAVARRL- 121
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ T + +++ S+ ++ ++C++GTY+R C +GL +G G M LR
Sbjct: 122 -------RTRTVHRLDVLESEARRV--LLSVECESGTYIRKLCHDIGLAVGTGGHMGPLR 172
Query: 201 RNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
R ++G ++ LVTF F ++ W
Sbjct: 173 RTKTG-GFDDRTLVTFED---FADGLAFW 197
>gi|448345620|ref|ZP_21534509.1| H/ACA RNA-protein complex component Cbf5p [Natrinema altunense JCM
12890]
gi|445633553|gb|ELY86740.1| H/ACA RNA-protein complex component Cbf5p [Natrinema altunense JCM
12890]
Length = 302
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 101/232 (43%), Gaps = 51/232 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + GKEY+++ + H+ V A+
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPADAE------------------ 108
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTY 178
S +AE E +KP + +L +V ++ ++C++GTY
Sbjct: 109 -------SVVAEFEGPIYQKPPRKSAVSRRLRVRELYDLEVLEVEDRRLLLRIRCESGTY 161
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VR C +GL LG GA M LRR + + T H F + WV
Sbjct: 162 VRKLCHDLGLALGTGAHMGHLRRTATDPFDDR----TLHSAHDFLDALGFWV 209
>gi|222480224|ref|YP_002566461.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lacusprofundi
ATCC 49239]
gi|222453126|gb|ACM57391.1| pseudouridylate synthase TruB domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 343
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 40/215 (18%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR------------CEKTGH 63
P P QR++ E +R G VN+DKP+ PSSH++ AW++ + H
Sbjct: 31 PLRSPPDQRSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINETLATLDPDGSPIHGVAH 90
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL ATR + KEY+S+ +LH + A + ++
Sbjct: 91 AGTLDPKVTGCLPTLTGDATRAAQVFLEGSKEYVSVLELHGS----PPADFRDVV----- 141
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAG 176
A + AE+ P +K + +L +V ++ ++C++G
Sbjct: 142 ------------AEFEAEIYQKPPRKSAVTRRLRTRTIYDLDVLEVDDRQALLRIRCESG 189
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
TY+R C +GL GVGA M LRR + + D
Sbjct: 190 TYIRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 224
>gi|448499272|ref|ZP_21611286.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum coriense DSM
10284]
gi|445697609|gb|ELZ49671.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum coriense DSM
10284]
Length = 329
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 26/208 (12%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL---------RCEKTG---H 63
P P +R++ E +R G VNLDKP+ PSSH+V AW++ + TG H
Sbjct: 13 PLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGGVAH 72
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
SGTLDPK +GCL ATR+ + KEY+++ +LH S + ++ +
Sbjct: 73 SGTLDPKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLELHGP-----PPSDFREVVAEFE 127
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ KP + S + T L +V ++ ++C++GTYVR C
Sbjct: 128 GPIYQKPPRKSAVS---------RRLRTRTIHELDLLEVADRRALLRIRCESGTYVRKLC 178
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEED 211
+GL G+GA M LRR+ + + D
Sbjct: 179 HDIGLAAGIGAHMGHLRRSATDPFDDRD 206
>gi|448634493|ref|ZP_21674891.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula vallismortis
ATCC 29715]
gi|445749466|gb|EMA00911.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula vallismortis
ATCC 29715]
Length = 296
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 19 KSPLQRTIQEYIRA-GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIV 77
++P + +R+ G VNLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V
Sbjct: 4 RAPPNERAPDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPV 63
Query: 78 CIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPAS 137
+ A R+ + A KEY+++ +LH + A A ++ A
Sbjct: 64 LLGDAARMAQVFDDAVKEYVTVLELH----DQAPADIADIV-----------------AE 102
Query: 138 YLAELEAAPNKKPTY---MKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVL 190
+ E+ P +K +++ I S L G ++ ++C +GTY+R C +GL
Sbjct: 103 FETEVYQKPPRKSAVKRQLRARRIHSLDILEQGERRLLLRVQCASGTYIRKLCHDIGLAA 162
Query: 191 GVGAQMIELRRNRSG 205
G GA M +LRR +G
Sbjct: 163 GTGAHMGDLRRTATG 177
>gi|448689511|ref|ZP_21695095.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula japonica DSM
6131]
gi|445777782|gb|EMA28742.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula japonica DSM
6131]
Length = 296
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G +NLDKP PS+H+V AWI+ ++ H GTLDPK +GCL V +
Sbjct: 7 PDERDLDSLRSFGVINLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
A R+ + +A KEY+++ +LH + A A ++ + +
Sbjct: 67 DAARMAQVFDNAIKEYVTVLELH----DQAPADIGDIV-----------------SEFET 105
Query: 141 ELEAAPNKKPTY---MKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P +K ++S I + L G ++ ++C +GTY+R C +GL G G
Sbjct: 106 EIYQKPPRKSAVKRQLRSRRIHALDILEQGERRLLLRVRCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|307352550|ref|YP_003893601.1| pseudouridylate synthase TruB domain-containing protein
[Methanoplanus petrolearius DSM 11571]
gi|307155783|gb|ADN35163.1| pseudouridylate synthase TruB domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 305
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 14/179 (7%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V LDKP PSSH+ AW IL TG GTLDP SG L++ + RA RL +
Sbjct: 16 GVVVLDKPQGPSSHQAAAWAAEILGV-NTGQGGTLDPMVSGVLVLMLGRAVRLAPVLLNH 74
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY+++ +LH V + + + K+ + ++ +P + + + + +
Sbjct: 75 RKEYVALMRLHKDVPE----ERIRTVAKEFIGRQYQRPPKMSAVKRQLRIREIYDLEILD 130
Query: 153 MKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++ L+ ++ ++C+AGTY+R C H+ L +G G QM+ELRR +SG +E +
Sbjct: 131 IEGRLV---------LMRVECEAGTYIRLLCRHIALAMGAGGQMVELRRTKSGPFTENE 180
>gi|212373350|dbj|BAE96933.2| Cbf5 [Thermodiscus maritimus]
Length = 228
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+ ++ GH GTLDPK +G L V + R TR+V S + KEY+ + +LH+ VE
Sbjct: 1 VAWIKRMFNIKRAGHGGTLDPKVTGVLPVALQRMTRIVGSVIHSDKEYVCVMQLHAPVE- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+ +++ L + G + P + ++ A KK Y K L+ +
Sbjct: 60 -------EERLREVLNEFEGVIYQRPPLR--SSVKRALRKKRVY-KIELLEYTGKYALLH 109
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLV 214
IW +AGTY+R C +GLVLG GA M ELRR R+G +EE GLV
Sbjct: 110 IW--SEAGTYMRKICWDVGLVLGTGAHMRELRRIRTGPFTEERGLV 153
>gi|448440151|ref|ZP_21588399.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum saccharovorum
DSM 1137]
gi|445690668|gb|ELZ42878.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum saccharovorum
DSM 1137]
Length = 333
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 40/215 (18%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR------------CEKTGH 63
P P R++ E +R G VN+DKP+ PSSH++ AW++ + + H
Sbjct: 23 PLRPPPEARSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINESLATLDPDGPPIDGVAH 82
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL ATR + KEY+S+ +LH + A + ++
Sbjct: 83 AGTLDPKVTGCLPTLTGDATRAAQVFLEGSKEYVSVVELHGS----PPADFRDVV----- 133
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAG 176
A + AE+ P +K + +L +V ++ ++C++G
Sbjct: 134 ------------AEFEAEIYQKPPRKSAVTRRLRTRTIHDLDVLEVDDRQALLRIRCESG 181
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
TYVR C +GL GVGA M LRR + + D
Sbjct: 182 TYVRKLCHDIGLATGVGAHMGHLRRTATDPFDDRD 216
>gi|433639033|ref|YP_007284793.1| rRNA pseudouridine synthase, putative [Halovivax ruber XH-70]
gi|433290837|gb|AGB16660.1| rRNA pseudouridine synthase, putative [Halovivax ruber XH-70]
Length = 309
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL--RCEKTGH--------SGTLDPK 70
P R+I + G VNLDKP PSSH+V AWI+ + R + GH +GTLDPK
Sbjct: 7 PDDRSIASLLSFGVVNLDKPPGPSSHQVSAWIRDAVDDRLAEAGHDPIGRAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
+GCL V + ATRL + KEY+++ + H V +
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYVAVLECHGPVPTDVE------------------- 107
Query: 131 NENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTYV 179
S LAE E +KP + ++ + ++ ++ ++C++GTYV
Sbjct: 108 ------STLAEFEGPIYQKPPRKSAVSRRLRVREIYDIDALEIEDRRVLLRIRCESGTYV 161
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
R C +GL LG GA M +LRR + + D
Sbjct: 162 RKLCHDLGLALGTGAHMGDLRRTATDPFDDRD 193
>gi|119874631|gb|ABM05792.1| dyskerin [Paraspadella gotoi]
Length = 232
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 9/135 (6%)
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ATRLVKSQQSAGKEY+ I + H + + + + + G L + +P +A
Sbjct: 1 ATRLVKSQQSAGKEYVGIARFHGDIAGGTQEMARALEMLTGALFQ--RP------PLIAA 52
Query: 142 LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
++ + Y +S L+ D + + W+ C+AGTYVRT CVH+GLVLGVG M ELRR
Sbjct: 53 VKRQLRVRTIY-ESKLLQFDEERNMAVFWISCEAGTYVRTLCVHLGLVLGVGGIMQELRR 111
Query: 202 NRSGIQSEEDGLVTF 216
RSG+ SE D L T
Sbjct: 112 VRSGVLSEADNLATM 126
>gi|161760539|ref|NP_394700.2| H/ACA RNA-protein complex component Cbf5p [Thermoplasma acidophilum
DSM 1728]
gi|37154785|sp|Q9HIT4.2|TRUB_THEAC RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
Length = 365
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 15/179 (8%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+V LDKP P+SH+V W++ IL EK H GTLDP +G L + I +A RLV +
Sbjct: 8 GFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHES 67
Query: 93 GKEYISIFKLHSAV-ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KEY+ + + + + E + KK G+ + P + + + K
Sbjct: 68 PKEYVGVMRFYEDITEEEVRYYFKKFT---------GRIYQLPPVR--SAVARSLRIKTV 116
Query: 152 YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
Y L D + + +KC++GTY+RT C +G V G G QM++LRR +G SE+
Sbjct: 117 YSLDLLEKKDRLV---LFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSED 172
>gi|212373346|dbj|BAE96931.2| Cbf5 [Stetteria hydrogenophila]
Length = 229
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 20/174 (11%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAW+KR+ + GH GTLDP+ +G L V + R TR+V S + KEY+ + +LH VE
Sbjct: 1 VAWVKRMFNVPRAGHGGTLDPRVTGVLPVALHRMTRVVGSVVHSSKEYVCVMQLHRPVE- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS----NLISSDVTL 164
+ +++ L G+ + P + K+ +K L+ D
Sbjct: 60 -------EERLREALRLFEGRIYQRPPLR-------SSVKRSLRVKRVDEIELLEYDGE- 104
Query: 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + C+AGTY+R C +GLVLGVGA M ELRR R+G SE GLVT ++
Sbjct: 105 RYALLRIACEAGTYMRKICWDVGLVLGVGAHMRELRRTRTGPFSEARGLVTLQE 158
>gi|448311944|ref|ZP_21501697.1| H/ACA RNA-protein complex component Cbf5p [Natronolimnobius
innermongolicus JCM 12255]
gi|445603565|gb|ELY57527.1| H/ACA RNA-protein complex component Cbf5p [Natronolimnobius
innermongolicus JCM 12255]
Length = 306
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 25/202 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P +R +E + G VNLDKP PSSH+V W++ + E+ H+GTLDP
Sbjct: 11 PAERPPEELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLTAQSTDATIEQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY+++ + H+ V A++ +G + + K
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGFKEYVAVLECHAPVPADAESVVADF---EGPI--YQK 125
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L +SD L ++ ++C++GTYVR C +GL
Sbjct: 126 PPRKSAVSRRLRV------REIYDLDVLEASDRQL---LLRIRCESGTYVRKLCHDLGLA 176
Query: 190 LGVGAQMIELRRNRSGIQSEED 211
LG G M LRR + + D
Sbjct: 177 LGTGGHMGHLRRTATSPFDDRD 198
>gi|448323124|ref|ZP_21512588.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus
amylolyticus DSM 10524]
gi|445600310|gb|ELY54323.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus
amylolyticus DSM 10524]
Length = 300
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 28/194 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR----------CEKTGHSGTLDPK 70
P +R+ E +R G VNLDKP PSSH+V W++ + ++ H+GTLDPK
Sbjct: 7 PEERSPAELLRFGVVNLDKPPGPSSHQVSGWLRDEVADALTKHGAEPIDQAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAK--ASKKKMMIKQGLLDKHG 128
+GCL V + ATRL ++ KEY+++ + H +V A+ AS+ + I Q
Sbjct: 67 VTGCLPVMLGEATRLAQTFLEGEKEYVAVLECHGSVPGDAESIASEFEGPIYQ------- 119
Query: 129 KPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
KP + S + + Y L D L ++ + C++GTYVR C +GL
Sbjct: 120 KPPRKSAVSRRLRV------REIYDLDVLEVEDRRL---LVRIGCESGTYVRKLCHDLGL 170
Query: 189 VLGVGAQMIELRRN 202
LG G M LRR
Sbjct: 171 ALGTGGHMGHLRRT 184
>gi|448338099|ref|ZP_21527151.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pallidum DSM
3751]
gi|445623274|gb|ELY76696.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pallidum DSM
3751]
Length = 302
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 51/232 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLAERGVASTIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + GKEY+++ + H+ V A+
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPADAE------------------ 108
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTY 178
S +AE E +KP + +L +V ++ ++C++GTY
Sbjct: 109 -------SVVAEFEGPIYQKPPRKSAVSRRLRVRELYDLEVLEVEDRRLLLRIRCESGTY 161
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VR C +GL LG GA M LRR + + T H F + W+
Sbjct: 162 VRKLCHDLGLALGTGAHMGHLRRTATEPFDDR----TLHSAHDFLDALGFWL 209
>gi|448341353|ref|ZP_21530314.1| H/ACA RNA-protein complex component Cbf5p [Natrinema gari JCM
14663]
gi|445628035|gb|ELY81346.1| H/ACA RNA-protein complex component Cbf5p [Natrinema gari JCM
14663]
Length = 302
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 51/232 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH++ W++ + ++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQISGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + GKEY+++ + H+ V A+
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPGDAE------------------ 108
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTY 178
S +AE E +KP + +L +V ++ ++C++GTY
Sbjct: 109 -------SVVAEFEGPIYQKPPRKSAVSRRLRVRELYDLEVLEVEDRRLLLRIRCESGTY 161
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VR C +GL LG GA M LRR + + T H F + W+
Sbjct: 162 VRKLCHDLGLALGTGAHMGHLRRTATEPFDDR----TLHSAHDFLDALGFWL 209
>gi|448399345|ref|ZP_21570647.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena limicola
JCM 13563]
gi|445669252|gb|ELZ21865.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena limicola
JCM 13563]
Length = 302
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 15 LPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKR-----ILRC------EKTGH 63
+P P +R+ E + G VNLDKP PSSH+V W++ + C ++ H
Sbjct: 1 MPLRGPPEERSPTELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADCGADVTIDRAAH 60
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL + + ATRL KEY+++ + H+ V A++ + +G
Sbjct: 61 AGTLDPKVTGCLPIMLGDATRLAPVFLEGAKEYVAVLECHAPVPADAESVVAEF---EGP 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ + KP + S + + Y L + + L ++ ++C++GTYVR C
Sbjct: 118 I--YQKPPRKSAVSRRLRV------REIYDLEVLEAEERRL---LVRIRCESGTYVRKLC 166
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+GL LG GA M LRR + + T H F ++ W+
Sbjct: 167 HDLGLALGTGAHMGHLRRTMTEPFDDR----TLHSAHDFLDALAFWL 209
>gi|119874643|gb|ABM05798.1| dyskerin [Phascolion strombus]
Length = 235
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 91/151 (60%), Gaps = 15/151 (9%)
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
+RATRLVKSQQ AGKEY+ IF+LHSAV + K ++ + L + P + L
Sbjct: 3 ERATRLVKSQQGAGKEYVCIFRLHSAVNDEMKLARSVETLTGALFQR--PPLISAVKRQL 60
Query: 140 AELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIEL 199
+ T +S LI D + GI+W+ C+AGTY+RT CVH+GL+LGVG QM EL
Sbjct: 61 --------RVRTIYESKLIEYDNERNLGILWVSCEAGTYIRTLCVHLGLLLGVGGQMQEL 112
Query: 200 RRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
RR RSGIQSE+D +T M + + + WV
Sbjct: 113 RRVRSGIQSEKDETMT-----MHDVMDAQWV 138
>gi|448392227|ref|ZP_21567097.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena salina JCM
13891]
gi|445664660|gb|ELZ17366.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena salina JCM
13891]
Length = 304
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 51/231 (22%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P RT E + G VNLDKP PSSH+V W++ + E+ H+GTLDP
Sbjct: 11 PDDRTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRAPDATIEQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY+++ + H+ V A+
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGSKEYVAVLECHAPVPADAE------------------ 112
Query: 130 PNENTPASYLAELEAAPNKKPT-------YMKSNLISSDVTLSTG----IIWLKCQAGTY 178
S +AE E +KP ++ I L T ++ ++C++GTY
Sbjct: 113 -------SVVAEFEGPIYQKPPRKSAVARRLRVREIYDLEVLETDERRLLVRIRCESGTY 165
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
VR C +GL LG G M LRR + + D H F ++ W
Sbjct: 166 VRKLCHDLGLALGTGGHMGHLRRTATSPFDDRD----LHSAHDFLDALAYW 212
>gi|212373336|dbj|BAE96926.2| Cbf5 [Aeropyrum camini SY1 = JCM 12091]
Length = 229
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 13/167 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+L + GH GTLDPK +G L V ++R TR++ + + KEY+ + +LH VE
Sbjct: 1 VAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGTVMHSSKEYVCVMQLHRPVE- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+ +++ L G+ + P + ++ A + + L + T +
Sbjct: 60 -------EGRLREVLRLFEGEIYQKPPLR--SSVKRALRTRRIFRIELL---EYTGKYAL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
+ + C+AGTY+R C +GLVLGVGA M ELRR R+G SE+ GL+
Sbjct: 108 LRVDCEAGTYMRKLCWDIGLVLGVGAHMRELRRVRTGPFSEDSGLMV 154
>gi|429190181|ref|YP_007175859.1| rRNA pseudouridine synthase [Natronobacterium gregoryi SP2]
gi|448326093|ref|ZP_21515463.1| H/ACA RNA-protein complex component Cbf5p [Natronobacterium
gregoryi SP2]
gi|429134399|gb|AFZ71410.1| rRNA pseudouridine synthase, putative [Natronobacterium gregoryi
SP2]
gi|445613227|gb|ELY66935.1| H/ACA RNA-protein complex component Cbf5p [Natronobacterium
gregoryi SP2]
Length = 304
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 29/221 (13%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P R +E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PDDRLPEELLPFGVVNLDKPPGPSSHQVSGWLRDAVDETLDDRGVDATIDRAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V ATRL + KEY+++ + HS+V A++ +G + + K
Sbjct: 69 KVTGCLPVMFGEATRLAQVFLEGPKEYVAVLECHSSVPADAESIVAAF---EGPI--YQK 123
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L ++D L ++ ++C++GTYVR C +GL
Sbjct: 124 PPRKSAVSRRLRV------REMYDLEVLEAADRRL---LLRIRCESGTYVRKLCHDLGLA 174
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
LG G M +LR R+G +D + QE F ++ WV
Sbjct: 175 LGTGGHMGDLR--RTGTSPFDDSSLHSVQE--FLDALAFWV 211
>gi|397773801|ref|YP_006541347.1| rRNA pseudouridine synthase [Natrinema sp. J7-2]
gi|397682894|gb|AFO57271.1| rRNA pseudouridine synthase [Natrinema sp. J7-2]
Length = 302
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH++ W++ + ++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQISGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + GKEY+++ + H+ V A++ + +G + + K
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPADAESVVAEF---EGPI--YQK 121
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L D L ++ ++C++GTYVR C +GL
Sbjct: 122 PPRKSAVSRRLRV------RELYDLEVLEVEDRRL---LLRIRCESGTYVRKLCHDLGLA 172
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
LG GA M LRR + + T H F + W+
Sbjct: 173 LGTGAHMGHLRRTATEPFDDR----TLYSAHDFLDALGFWL 209
>gi|408402829|ref|YP_006860812.1| tRNA pseudouridine synthase B [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408363425|gb|AFU57155.1| tRNA pseudouridine synthase B [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 355
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 15/202 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ + G V +DKP+ P+SHEVVAW+KRIL EK GHSGTLDP +G L
Sbjct: 21 YGHYPDRRPIESLLYYGLVLVDKPAGPTSHEVVAWVKRILEIEKAGHSGTLDPGATGLLP 80
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + T+ + KEY ++ +LHS + + K ++++ + + +P + +
Sbjct: 81 LGLGEGTKALSVLLLGPKEYYALARLHSHI----SVDRLKRVMQEFTGEIYQRPPQRSSV 136
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ Y L + D + I+ CQAGTY+R +G VL GA M
Sbjct: 137 R------RVTRVRTVYEFDYLENYDRLVLMRIL---CQAGTYIRKIIYDIGEVLSPGATM 187
Query: 197 IELRRNRSGIQSEED--GLVTF 216
+ELRR R SE++ GLV
Sbjct: 188 VELRRTRVSNLSEQNSGGLVKL 209
>gi|284165530|ref|YP_003403809.1| pseudouridylate synthase [Haloterrigena turkmenica DSM 5511]
gi|284015185|gb|ADB61136.1| pseudouridylate synthase TruB domain protein [Haloterrigena
turkmenica DSM 5511]
Length = 304
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 51/231 (22%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P RT E + G VNLDKP PSSH+V W++ + E+ H+GTLDP
Sbjct: 11 PEDRTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRAPDATIEQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY+++ + H+ V A+
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGHKEYVAVLECHAPVPADAE------------------ 112
Query: 130 PNENTPASYLAELEAAPNKKPT-------YMKSNLISSDVTLSTG----IIWLKCQAGTY 178
S +AE E +KP ++ I L T ++ ++C++GTY
Sbjct: 113 -------SVVAEFEGPIYQKPPRKSAVARRLRVREIYDLEVLETDERRLLLRIRCESGTY 165
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
VR C +GL LG G M LRR + + D H F ++ W
Sbjct: 166 VRKLCHDLGLALGTGGHMGHLRRTATSPFDDRD----LHSAHDFLDALAYW 212
>gi|448668021|ref|ZP_21686264.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula amylolytica
JCM 13557]
gi|445768679|gb|EMA19758.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula amylolytica
JCM 13557]
Length = 296
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P R + G VNLDKP PS+H+V AWI+ + H GTLDPK +GCL V +
Sbjct: 7 PDDRDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQNRVAHGGTLDPKVTGCLPVLLG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
A R+ + A KEY+++ +LH + A A ++ A +
Sbjct: 67 DAARMAQVFDDAVKEYVTVLELH----DQAPADITDIV-----------------AEFET 105
Query: 141 ELEAAPNKKPTY---MKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P +K ++S I + L ++ ++C +GTY+R C +GL G G
Sbjct: 106 EIYQKPPRKSAVKRQLRSRRIHALDILEQAERRLLLRVRCASGTYIRKLCHDIGLAAGTG 165
Query: 194 AQMIELRRNRSG 205
A M +LRR +G
Sbjct: 166 AHMGDLRRTATG 177
>gi|257387781|ref|YP_003177554.1| H/ACA RNA-protein complex component Cbf5p [Halomicrobium mukohataei
DSM 12286]
gi|257170088|gb|ACV47847.1| pseudouridylate synthase TruB domain protein [Halomicrobium
mukohataei DSM 12286]
Length = 299
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 99/218 (45%), Gaps = 40/218 (18%)
Query: 19 KSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCE-----------KTGHSGTL 67
SP R+ + + G VNLDKP PS+H+V AW++ + + H GTL
Sbjct: 4 DSPEHRSPADLLTFGVVNLDKPPGPSAHQVAAWVRDAVDDALDAAGDDRTLGRVAHGGTL 63
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +GCL + + A R + A KEY++I +LH D+
Sbjct: 64 DPKVTGCLPILLGDAARAARVFDDAVKEYVTILELH---------------------DQA 102
Query: 128 GKPNENTPASYLAELEAAPNKKPTY---MKSNLISSDVTLST----GIIWLKCQAGTYVR 180
++ A + E+ P +K ++S I + L ++ ++C +GTYVR
Sbjct: 103 PPDFDSIVAEFEGEIYQKPPRKSAVKRRLRSRTIHALDVLERHDRRALLRVRCGSGTYVR 162
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
C +GL LG GA M ELRR +G + D LVT
Sbjct: 163 KLCHDIGLALGTGAHMGELRRTATGDFDDRD-LVTMED 199
>gi|119874637|gb|ABM05795.1| dyskerin [Sabella pavonina]
Length = 229
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 21/151 (13%)
Query: 84 RLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELE 143
RLVKSQQSAGKEY+ IF+LHSA E+ AK + M+ L + L
Sbjct: 1 RLVKSQQSAGKEYVCIFRLHSAPESHAKVLQTIEMLTGALFQ-------------MPPLI 47
Query: 144 AAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+A ++ T +S L+ + GI+W+ C+AGTY+RT CVH+GL+LGVG QM ELR
Sbjct: 48 SAVKRQLXIRTIYESKLLEFHKERNMGILWVSCEAGTYIRTLCVHLGLLLGVGGQMQELR 107
Query: 201 RNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
R RSGIQSE+DGL+T M + + + W+L
Sbjct: 108 RVRSGIQSEKDGLMT-----MHDVLDAQWLL 133
>gi|48477739|ref|YP_023445.1| H/ACA RNA-protein complex component Cbf5p [Picrophilus torridus DSM
9790]
gi|62901314|sp|Q6L1A0.1|TRUB_PICTO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|48430387|gb|AAT43252.1| tRNA pseudouridine 55 synthase [Picrophilus torridus DSM 9790]
Length = 349
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP P+SH++ +WI+ I + GH GTLDP SG L++ + +AT+L+
Sbjct: 6 GFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDIVHRE 65
Query: 93 GKEYISIFKL-----HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
KEY+S+ + H ++++V K K+ + P + S + N
Sbjct: 66 SKEYVSVLRTYDKYDHDSIKSVFKEFTGKI---------YQIPPVRSAVSRELRIREIYN 116
Query: 148 KKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ M + + + C++GTY+RT C +G VLG G QM ELRR R+G
Sbjct: 117 LELLEMDEKFV---------LFKVCCESGTYIRTLCTDIGYVLGSGGQMAELRRTRTG 165
>gi|448460436|ref|ZP_21597261.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lipolyticum
DSM 21995]
gi|445807177|gb|EMA57263.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lipolyticum
DSM 21995]
Length = 325
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 54/213 (25%)
Query: 16 PFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR------------CEKTGH 63
P P +R++ E +R G VN+DKP+ PSSH++ AW++ + H
Sbjct: 15 PLRAPPGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINDTLAALDPDGPPIAGVAH 74
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK +GCL ATR + KEY+S+ +LH
Sbjct: 75 AGTLDPKVTGCLPTLTGDATRAAQVFLEGSKEYVSVLELH-------------------- 114
Query: 124 LDKHGKPNENTPASY---LAELEAAPNKKP-----------TYMKSNLISSDVTLSTGII 169
G P PA + +AE EA +KP T +L +V ++
Sbjct: 115 ----GSP----PADFRDVVAEFEAEIYQKPPRKSAVTRRLRTRTIHDLDLLEVDDWQALL 166
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRN 202
++C++GTYVR C +GL GVGA M LRR
Sbjct: 167 RIRCESGTYVRKLCHDIGLATGVGAHMGHLRRT 199
>gi|433590230|ref|YP_007279726.1| rRNA pseudouridine synthase, putative [Natrinema pellirubrum DSM
15624]
gi|448332364|ref|ZP_21521608.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pellirubrum
DSM 15624]
gi|433305010|gb|AGB30822.1| rRNA pseudouridine synthase, putative [Natrinema pellirubrum DSM
15624]
gi|445627468|gb|ELY80792.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pellirubrum
DSM 15624]
Length = 301
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR----------CEKTGHSGTLDPK 70
P +R+ + + G VNLDKP PSSH+V W++ + ++ H+GTLDPK
Sbjct: 7 PAERSPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLADQGAATIDRAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
+GCL V + ATRL + KEY ++ + H+ V A++ + +G + P
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYTAVLECHAPVPADAESVVAEF---EGPI-YQKPP 122
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
++ A L + Y L + D L ++ ++C++GTYVR C +GL L
Sbjct: 123 RKSAVARRL-------RVREIYDLEVLEAEDRRL---LLRIRCESGTYVRKLCHDLGLAL 172
Query: 191 GVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
G G M LRR + + T H F ++ WV
Sbjct: 173 GTGGHMGHLRRTATDPFDDR----TLHSAHDFLDALAFWV 208
>gi|291232967|ref|XP_002736425.1| PREDICTED: dyskerin-like, partial [Saccoglossus kowalevskii]
Length = 155
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 10/123 (8%)
Query: 94 KEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYM 153
KEY+ + +LHSA+EN AK ++ + + + P + L + T
Sbjct: 1 KEYVCVVRLHSAIENEAKLARVIETLTGAVFQR--PPLISAVKRQL--------RVRTIY 50
Query: 154 KSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+S L+ D G++W+ C+AGTY+RT CVHMGL+LGVG QM ELRR RSGIQSE D +
Sbjct: 51 ESKLLEYDEERHLGVVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNM 110
Query: 214 VTF 216
VT
Sbjct: 111 VTM 113
>gi|421860634|ref|ZP_16292740.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410829820|dbj|GAC43177.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 31/214 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++R++R ++ GH+GTLDP+ G L +C+ RATRLV+ Q
Sbjct: 7 GVLPVWKPAGWTSHDVVAKVRRLIREKRIGHTGTLDPQVVGVLPLCVGRATRLVEYLQEM 66
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY---- 138
KEY + +L VE + + MI + LL G P E P Y
Sbjct: 67 PKEYEATLRLGVSTDTEDMSGEVVERADASHVTEAMIAEALLSFIG-PIEQVPPMYSAVK 125
Query: 139 --------LAELEAAPNKKPTYMKSNLISSDVTLSTGII------WLKCQAGTYVRTYCV 184
LA +KP + + I + L G + ++C GTY+RT CV
Sbjct: 126 VNGKRLYELAREGKTVERKPRQVTIHHIKL-IGLRLGDVEPEVRFRVQCSKGTYIRTLCV 184
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G LGV A M +L R RS +ED VTF Q
Sbjct: 185 DIGRKLGVPATMAKLIRTRSANFGQEDS-VTFTQ 217
>gi|77551909|gb|ABA94706.1| Kinetochore protein, putative [Oryza sativa Japonica Group]
gi|125577684|gb|EAZ18906.1| hypothetical protein OsJ_34446 [Oryza sativa Japonica Group]
Length = 142
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 6/86 (6%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R V LD+ S VVAWIKR+LR KTGHSGTLDPK +G LIVC+D ATRLVKSQQ
Sbjct: 48 RPPRVRLDRRS------VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQ 101
Query: 91 SAGKEYISIFKLHSAVENVAKASKKK 116
AGKEY + + H+AV + A+ ++ +
Sbjct: 102 GAGKEYGCVARFHAAVPDTARDARSR 127
>gi|424812858|ref|ZP_18238098.1| pseudouridine synthase [Candidatus Nanosalinarum sp. J07AB56]
gi|339757080|gb|EGQ40663.1| pseudouridine synthase [Candidatus Nanosalinarum sp. J07AB56]
Length = 319
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR T FG P R+ +E + G V LDKP P S++V +W+++ L KTGH GT
Sbjct: 7 VREEADTDPDFGCVPSSRSAEELLERGLVVLDKPYGPPSNQVSSWLRKSLDLGKTGHFGT 66
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDP +G L V ++R TRL + KEY +F++ S E +++A +K L D
Sbjct: 67 LDPHATGVLPVGLNRGTRLSPALSETRKEY--VFEV-SLSEPISEAEARK-----ALKDF 118
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G+ N P A +E + Y L TL + ++C++G YVR +
Sbjct: 119 VGE-NRQVPPEKSA-VERKERSRELYEAELLECLGCTL---LARIRCESGFYVRVLVDQL 173
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G LGV A+M +LRR G SE++ +
Sbjct: 174 GDQLGVDAEMPDLRRTSQGEISEDESV 200
>gi|424813549|ref|ZP_18238742.1| pseudouridine synthase [Candidatus Nanosalina sp. J07AB43]
gi|339758696|gb|EGQ43950.1| pseudouridine synthase [Candidatus Nanosalina sp. J07AB43]
Length = 319
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 29/213 (13%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
R T FG P R++++ + G V +DKP P+S++V WIK+ L +KTGH GTL
Sbjct: 7 REEAETDPEFGNLPENRSVEKLLDEGIVIIDKPFGPTSNQVSTWIKQELDIKKTGHFGTL 66
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVE--------NVAKASKKKMMI 119
DP +G L V ++ ATRL ++ A KEY+ +L N K + K++
Sbjct: 67 DPNATGVLPVALNSATRLNEALAKADKEYVFEAELQDGKTEEKIREELNTFKGTNKQVPP 126
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
++ + + + E S++ +LE T + ++C++G YV
Sbjct: 127 EKSAVKREERQREVYSISFIEKLE---------------------ETILGKVRCESGFYV 165
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDG 212
R +G LG A+M ELRR G +E++
Sbjct: 166 RVLVDQLGDKLGTEAEMTELRRTMQGEITEDEA 198
>gi|448329398|ref|ZP_21518698.1| H/ACA RNA-protein complex component Cbf5p [Natrinema versiforme JCM
10478]
gi|445614137|gb|ELY67818.1| H/ACA RNA-protein complex component Cbf5p [Natrinema versiforme JCM
10478]
Length = 302
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 7 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVDTLAERGVESTIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + GKEY+++ + H+ V A++ + +G + + K
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPADAESVVAEF---EGPI--YQK 121
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L + + L ++ ++C++GTYVR C +GL
Sbjct: 122 PPRKSAVSRRLRV------RELYDLEVLETEERRL---LLRIRCESGTYVRKLCHDLGLA 172
Query: 190 LGVGAQMIELRRN 202
LG G M LRR
Sbjct: 173 LGTGGHMGHLRRT 185
>gi|448317109|ref|ZP_21506667.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus jeotgali
DSM 18795]
gi|445604533|gb|ELY58480.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus jeotgali
DSM 18795]
Length = 300
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 92/206 (44%), Gaps = 52/206 (25%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR----------CEKTGHSGTLDPK 70
P +R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDPK
Sbjct: 7 PEERSPAELLAFGVVNLDKPPGPSSHQVSGWLRDAVADALAERGAEPIDRAAHAGTLDPK 66
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
+GCL V + ATRL ++ KEY+++ + H +V A
Sbjct: 67 VTGCLPVMLGDATRLAQTFLEGEKEYVTVLECHGSVPGDA-------------------- 106
Query: 131 NENTPASYLAELEAAPNKKP--------------TYMKSNLISSDVTLSTGIIWLKCQAG 176
A +AE E +KP Y L + D L ++ + C++G
Sbjct: 107 -----ADVVAEFEGPIYQKPPRKSAVSRRLRTREIYDLEVLEAEDRRL---LLRIGCESG 158
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRN 202
TYVR C +GL LG GA M LRR
Sbjct: 159 TYVRKLCHDLGLALGTGAHMGHLRRT 184
>gi|448350214|ref|ZP_21539033.1| H/ACA RNA-protein complex component Cbf5p [Natrialba taiwanensis
DSM 12281]
gi|445637721|gb|ELY90869.1| H/ACA RNA-protein complex component Cbf5p [Natrialba taiwanensis
DSM 12281]
Length = 308
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLAERDTGETIDQAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + ATRL + KEY+++ + H + AK
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAK------------------ 110
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS--------NLISSDVTLSTG---IIWLKCQAGTY 178
S LAE E +KP + + DV G ++ ++C++GTY
Sbjct: 111 -------SILAEFEGPIYQKPPRKSAVSRRLRVREIYDLDVLERDGRQLLLRIRCESGTY 163
Query: 179 VRTYCVHMGLVLGVGAQMIELRRN 202
VR C +GL LG G M LRR
Sbjct: 164 VRKLCHDLGLALGTGGHMGHLRRT 187
>gi|448386127|ref|ZP_21564335.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena
thermotolerans DSM 11522]
gi|445656025|gb|ELZ08867.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena
thermotolerans DSM 11522]
Length = 302
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 51/232 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P +R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 7 PAERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLADRGAAATIDRAAHAGTLDP 66
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY ++ + H+ V A+
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGAKEYTAVLECHAPVPADAE------------------ 108
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTY 178
S +AE E +KP + +L + ++ ++C++GTY
Sbjct: 109 -------SVVAEFEGPIYQKPPRKSAVARRLRVREICDLEVLEAEDRRLLLRIRCESGTY 161
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VR C +GL LG G M LRR + + T H F ++ WV
Sbjct: 162 VRKLCHDLGLALGTGGHMGHLRRTATDPFDDR----TLHSAHDFLDALAFWV 209
>gi|448309730|ref|ZP_21499585.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum bangense
JCM 10635]
gi|445589396|gb|ELY43629.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum bangense
JCM 10635]
Length = 306
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P +RT E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 11 PDERTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVDTLSERGADVSIDQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY+++ + H+ V A++ + +G + + K
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGPKEYVAVLECHAPVPVDAESVIAEF---EGPI--YQK 125
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L + D + ++ ++C++GTYVR C +GL
Sbjct: 126 PPRKSAVSRRLRV------REMYDLEVLETDDRQI---LLRIRCESGTYVRKLCHDLGLA 176
Query: 190 LGVGAQMIELRRN 202
LG G M LRR
Sbjct: 177 LGTGGHMGHLRRT 189
>gi|452208085|ref|YP_007488207.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas moolapensis
8.8.11]
gi|452084185|emb|CCQ37520.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas moolapensis
8.8.11]
Length = 292
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 37/214 (17%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R + G VNLDKP PS+H+V AW++ + ++ H+GTLDPK +GCL +
Sbjct: 7 PAERDPATLLEFGVVNLDKPPGPSAHQVAAWVRDMAGVDRAAHAGTLDPKVTGCLPILTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR + + K Y+++ + H + E+T +++
Sbjct: 67 TATRAAQVFDDSRKGYVAVLEAHGRLP---------------------ADFESTLSAFET 105
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
L P +K ++ L + + ++ ++C +GTY+R C +GL LG G
Sbjct: 106 ALYQKPPRKSAVVRRLRTREIHRLEALEREERRALLDIECASGTYIRKLCHDLGLALGTG 165
Query: 194 AQMIELRRNR---------SGIQSEEDGLVTFRQ 218
A M +LRR + S ++ DGL +R+
Sbjct: 166 AHMGDLRRTKTAGFTDATLSTMEDLADGLAFWRE 199
>gi|10640590|emb|CAC12368.1| dyskerin (nucleolar protein Nap57) related protein [Thermoplasma
acidophilum]
Length = 355
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 37 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
LDKP P+SH+V W++ IL EK H GTLDP +G L + I +A RLV + KEY
Sbjct: 2 LDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHESPKEY 61
Query: 97 ISIFKLHSAV-ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS 155
+ + + + + E + KK G+ + P + + + K Y
Sbjct: 62 VGVMRFYEDITEEEVRYYFKKFT---------GRIYQLPPVR--SAVARSLRIKTVYSLD 110
Query: 156 NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
L D + + +KC++GTY+RT C +G V G G QM++LRR +G SE+
Sbjct: 111 LLEKKDRLV---LFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSED 162
>gi|383625235|ref|ZP_09949641.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
gi|448699352|ref|ZP_21699286.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
gi|445780337|gb|EMA31229.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
Length = 304
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 37/225 (16%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P +R+ + + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PDERSPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRGLEASIDRAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAV----ENVAKASKKKMMIKQGLLD 125
K +GCL V + ATRL + KEY+++ + H +V E++ + + K
Sbjct: 69 KVTGCLPVMLGDATRLAQVFLEGPKEYVAVLECHGSVPADTESIVAEFEGPIYQK----- 123
Query: 126 KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
P ++ A L + Y L + D L ++ ++C++GTY+R C
Sbjct: 124 ---PPRKSAVARRL-------RVRELYKLEVLEAEDRRL---LLRIECESGTYIRKLCHD 170
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+GL LG GA M +LRR + + D F ++ WV
Sbjct: 171 LGLALGTGAHMGDLRRTATSPFDDRD----LHSAQEFLDALAFWV 211
>gi|448302902|ref|ZP_21492852.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum
sulfidifaciens JCM 14089]
gi|445593909|gb|ELY48076.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum
sulfidifaciens JCM 14089]
Length = 306
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P +RT + + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 11 PDERTPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLSERGADASIDQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL V + ATRL + KEY+++ + H+ V A++ + +G + + K
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGPKEYVAVLECHAPVPADAESVIAEF---EGPI--YQK 125
Query: 130 PNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P + S + + Y L + D + ++ ++C++GTYVR C +GL
Sbjct: 126 PPRKSAVSRRLRV------REMYDLEVLETDDRQI---LLRIRCESGTYVRKLCHDLGLA 176
Query: 190 LGVGAQMIELRRN 202
LG G M LRR
Sbjct: 177 LGTGGHMGHLRRT 189
>gi|448715153|ref|ZP_21702344.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma
nitratireducens JCM 10879]
gi|445788045|gb|EMA38770.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma
nitratireducens JCM 10879]
Length = 303
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 51/232 (21%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL-----------RCEKTGHSGTLDP 69
P +R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PDERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRGPEASIDRAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + + ATRL + KEY+++ + H ++ + A
Sbjct: 69 KVTGCLPIMLGDATRLAQVFLEGPKEYVAVLECHGSIPSDA------------------- 109
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLKCQAGTY 178
AS +A E +KP + +L +V ++ ++C++GTY
Sbjct: 110 ------ASIVAAFEGPIYQKPPRKSAVARRLRVREIYDLEVLEVEERRLLLRIRCESGTY 163
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VR C +GL LG G M +LRR + + D F + WV
Sbjct: 164 VRKLCHDLGLALGTGGHMGDLRRTATSPFDDTD----LHSAQAFLDALGFWV 211
>gi|448369906|ref|ZP_21556359.1| H/ACA RNA-protein complex component Cbf5p [Natrialba aegyptia DSM
13077]
gi|445650346|gb|ELZ03270.1| H/ACA RNA-protein complex component Cbf5p [Natrialba aegyptia DSM
13077]
Length = 308
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 37/199 (18%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P R+ E + G +NLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVINLDKPPGPSSHQVSGWLRDAVAETLAERDTGEAIDQAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + ATRL + KEY+++ + H + AK+ +LD+
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAKS----------ILDEFEG 118
Query: 130 PNENTPASYLAELEAAPNKKPTYMK---SNLISSDVTLSTG---IIWLKCQAGTYVRTYC 183
P P P K + + DV G ++ ++C++GTYVR C
Sbjct: 119 PIYQKP----------PRKSAVSRRLRVREIYDLDVLERDGRQLLLRIRCESGTYVRKLC 168
Query: 184 VHMGLVLGVGAQMIELRRN 202
+GL LG G M LRR
Sbjct: 169 HDLGLALGTGGHMGHLRRT 187
>gi|222622589|gb|EEE56721.1| hypothetical protein OsJ_06224 [Oryza sativa Japonica Group]
Length = 113
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 62/89 (69%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCI 79
SPL++ I +++ G +NL+KPSN SHEV+ W K +L EKT H+GTLDPK +G LIVC+
Sbjct: 18 SPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVCV 77
Query: 80 DRATRLVKSQQSAGKEYISIFKLHSAVEN 108
+RATRLVKS A E I + H+ V +
Sbjct: 78 NRATRLVKSWLGASNECICVACFHAIVPD 106
>gi|448362271|ref|ZP_21550882.1| H/ACA RNA-protein complex component Cbf5p [Natrialba asiatica DSM
12278]
gi|445648792|gb|ELZ01740.1| H/ACA RNA-protein complex component Cbf5p [Natrialba asiatica DSM
12278]
Length = 308
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 88/204 (43%), Gaps = 47/204 (23%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLAERDTGETIDQAAHAGTLDP 68
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + ATRL + KEY+++ + H + AK
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAK------------------ 110
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS--------NLISSDVTLSTG---IIWLKCQAGTY 178
S LA E +KP + + DV G ++ ++C++GTY
Sbjct: 111 -------SVLAAFEGPIYQKPPRKSAVSRRLRVREIYDLDVLERDGRQLLLRIRCESGTY 163
Query: 179 VRTYCVHMGLVLGVGAQMIELRRN 202
VR C +GL LG G M LRR
Sbjct: 164 VRKLCHDLGLALGTGGHMGHLRRT 187
>gi|119874635|gb|ABM05794.1| dyskerin [Priapulus caudatus]
Length = 233
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 10/136 (7%)
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
RATRLVKSQQ AGKEY+++ + HSAVE+ K ++ + L + P + L
Sbjct: 2 RATRLVKSQQGAGKEYVAVVRFHSAVESQQKLAQAVETLTGALFQR--PPLISAVKRQL- 58
Query: 141 ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELR 200
+ T +S L D + G+ W+ C+AGTY+RT CVH+GL+LG+G QM ELR
Sbjct: 59 -------RIRTIYESKLSEYDNDKNMGVFWVSCEAGTYIRTLCVHLGLLLGIGGQMQELR 111
Query: 201 RNRSGIQSEEDGLVTF 216
R RSGI SE+D LVT
Sbjct: 112 RVRSGILSEQDNLVTM 127
>gi|70606602|ref|YP_255472.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius DSM 639]
gi|68567250|gb|AAY80179.1| tRNA pseudouridine synthase [Sulfolobus acidocaldarius DSM 639]
Length = 319
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
FG +R I+ I+ +NLDKP P+SHEV W+K++ K GH GTL+P
Sbjct: 31 FGYYADKRPIESLIKNSIINLDKPPGPTSHEVAYWVKKLFNITKAGHGGTLEP------- 83
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
++ +GKEYI + ++H V+ + K +I Q + + + KP +
Sbjct: 84 --------VMNYISKSGKEYICLLQMHCNVDQ----KELKEIISQFVGEIYQKPPVRSSV 131
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
M+ LI ++ ++ AGTY+R C +G++ G G+ M
Sbjct: 132 KRRIRKRRIYAIDILDMQDKLI---------LLRVQSDAGTYMRKLCHDVGVIAGCGSHM 182
Query: 197 IELRRNRSGIQSEEDGLVTFRQ 218
ELRR RSGI +E+ +VT ++
Sbjct: 183 RELRRIRSGIFTEKTNMVTLQE 204
>gi|386725628|ref|YP_006191954.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
gi|384092753|gb|AFH64189.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
Length = 305
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 32/203 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++RIL+ ++ GH+GTLDP+ +G L +CI RATRLV+ Q
Sbjct: 5 GILPVWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 64
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA--SYLAELEAAP---- 146
KEY + +L A + S + + GL K P E T A + E+E P
Sbjct: 65 PKEYEATLRLGIATDT-EDLSGSVLRTEDGLSLKL-TPEEVTEAIHRFTGEIEQVPPMYS 122
Query: 147 ----------------------NKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTYVRTY 182
++ T K ++S+D T + + C GTY+RT
Sbjct: 123 AVKVDGKRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTL 182
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
CV +G +GV A M EL R +G
Sbjct: 183 CVDIGAAIGVPAVMAELVRTSTG 205
>gi|337750000|ref|YP_004644162.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|379722851|ref|YP_005314982.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
gi|336301189|gb|AEI44292.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|378571523|gb|AFC31833.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 32/203 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++RIL+ ++ GH+GTLDP+ +G L +CI RATRLV+ Q
Sbjct: 5 GILPVWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 64
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA--SYLAELEAAP---- 146
KEY + +L A + S + + GL K P E T A + E+E P
Sbjct: 65 PKEYEATLRLGIATDT-EDLSGSVLRTEDGLSLKL-TPEEVTEAIHRFTGEIEQVPPMYS 122
Query: 147 ----------------------NKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTYVRTY 182
++ T K ++S+D T + + C GTY+RT
Sbjct: 123 AVKVDGKRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTL 182
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
CV +G +GV A M EL R +G
Sbjct: 183 CVDIGAAIGVPAVMAELVRTSTG 205
>gi|448358841|ref|ZP_21547515.1| H/ACA RNA-protein complex component Cbf5p [Natrialba chahannaoensis
JCM 10990]
gi|445644521|gb|ELY97534.1| H/ACA RNA-protein complex component Cbf5p [Natrialba chahannaoensis
JCM 10990]
Length = 318
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 35/204 (17%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR---------------------C 58
+P RT E ++ G VNLDKP PSSH+V W++ +
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVADALAEADHGGDSDSDNDTTPTI 69
Query: 59 EKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMM 118
++ H+GTLDPK +GCL + ATRL + KEY+++ + H ++ + K++ +
Sbjct: 70 DQAAHAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIPSDVKSTIAEF- 128
Query: 119 IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
+G + + KP + S + + Y L D L ++ ++C++GTY
Sbjct: 129 --EGPI--YQKPPRKSAVSRRLRV------REIYDLEILEQGDRQL---LLRMRCESGTY 175
Query: 179 VRTYCVHMGLVLGVGAQMIELRRN 202
VR C +GL LG G M LRR
Sbjct: 176 VRKLCHDLGLALGTGGHMGHLRRT 199
>gi|448298501|ref|ZP_21488530.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum tibetense
GA33]
gi|445591697|gb|ELY45898.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum tibetense
GA33]
Length = 306
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 47/204 (23%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P R+ E + G VNLDKP PSSH+V W++ + E+ H+GTLDP
Sbjct: 11 PDDRSPVELLTFGVVNLDKPPGPSSHQVSGWLRDSVAETLAERGADATLEQAAHAGTLDP 70
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + + ATRL + KEYI++ + H+ V +
Sbjct: 71 KVTGCLPLMLGEATRLAQVFLEGSKEYIAVLECHAPVPADVE------------------ 112
Query: 130 PNENTPASYLAELEAAPNKKPT-------YMKSNLISSDVTLSTG----IIWLKCQAGTY 178
S +AE E +KP ++ I L T ++ ++C++GTY
Sbjct: 113 -------SVVAEFEGPIYQKPPRKSAVSRRLRVREIYDLEVLETDERQVLLRIRCESGTY 165
Query: 179 VRTYCVHMGLVLGVGAQMIELRRN 202
VR C +GL LG G M LRR+
Sbjct: 166 VRKLCHDLGLALGTGGHMGHLRRS 189
>gi|289579959|ref|YP_003478425.1| pseudouridylate synthase TruB domain-containing protein [Natrialba
magadii ATCC 43099]
gi|448281196|ref|ZP_21472503.1| H/ACA RNA-protein complex component Cbf5p [Natrialba magadii ATCC
43099]
gi|289529512|gb|ADD03863.1| pseudouridylate synthase TruB domain protein [Natrialba magadii
ATCC 43099]
gi|445579126|gb|ELY33522.1| H/ACA RNA-protein complex component Cbf5p [Natrialba magadii ATCC
43099]
Length = 314
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 31/200 (15%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------------CEKTG 62
+P RT E ++ G VNLDKP PSSH+V W++ + ++
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVADALAEADQSEDSDTSPTIDQAA 69
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQG 122
H+GTLDPK +GCL + ATRL + KEY+++ + H ++ +++ + +G
Sbjct: 70 HAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIPADVESTVAEF---EG 126
Query: 123 LLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
+ + KP + S + + Y L D L ++ ++C++GTYVR
Sbjct: 127 PI--YQKPPRKSAVSRRLRV------REIYELDVLEQGDRQL---LLRIRCESGTYVRKL 175
Query: 183 CVHMGLVLGVGAQMIELRRN 202
C +GL LG G M LRR
Sbjct: 176 CHDLGLALGTGGHMGHLRRT 195
>gi|256252644|dbj|BAH97719.1| Cbf5 [Ignisphaera aggregans]
Length = 228
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIK++ K GH GTLDPK +G L V +DRATR++ + KEY+ + +LH VE
Sbjct: 1 VAWIKKMFNIPKAGHGGTLDPKVTGVLPVALDRATRVIGILMHSYKEYVGVMELHGDVEP 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
KM + GK + P + ++ + + Y L ++ +
Sbjct: 61 EKVIETMKMFV--------GKIYQRPPLR--SSVKRSLRIREIYSIDVL---EIENRRVL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+KCQ+GTYVR C +GL+LGV A M ELRR +E +VT +
Sbjct: 108 FRVKCQSGTYVRKLCHDIGLLLGVEAHMRELRRIGVAHFTENRDIVTLHE 157
>gi|172057844|ref|YP_001814304.1| tRNA pseudouridine synthase B [Exiguobacterium sibiricum 255-15]
gi|171990365|gb|ACB61287.1| tRNA pseudouridine synthase B [Exiguobacterium sibiricum 255-15]
Length = 302
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 31/211 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP+ +SH+ V ++R+ + +K GH+GTLDP+ +G L +C+ RAT+L +
Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64
Query: 93 GKEYISIFKLHSAVEN------------VAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
GK Y++ + A V AS + + + L G+ E TP Y A
Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQ-IEQTPPYYSA 123
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGI----IWLKCQAGTYVRTY 182
+E + + + +S +T + G+ I + C GTY+RT
Sbjct: 124 VKVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTL 183
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG A M ELRR SG+ SE + +
Sbjct: 184 AVEIGEQLGYAAHMSELRRTSSGMMSETEAV 214
>gi|94263053|ref|ZP_01286872.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93456596|gb|EAT06704.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 25/196 (12%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQSAG 93
+ LDKP PSS +V ++R L +K GH+GTLDP SG L+VC+ R ATRLV+ +
Sbjct: 14 IPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAGD 73
Query: 94 KEYISIFKLHSA---------VENVAKASKKKMM-IKQGLLDKHGKPNENTPASYLAELE 143
KEY++ +L A V A+ + ++++ +++ L G+ ++ PA + +
Sbjct: 74 KEYLATLQLGVATDTHDREGQVTATAEVTHEQLLRLQEVLFRFRGEILQSPPAFSAVKHQ 133
Query: 144 AAP-----------NKKPTYMKSNLISS---DVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P K P +K + ++ D +I ++C GTY+R+ +G
Sbjct: 134 GRPLYVYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQS 193
Query: 190 LGVGAQMIELRRNRSG 205
LG GA ++ELRR SG
Sbjct: 194 LGCGAHLLELRRLASG 209
>gi|392373661|ref|YP_003205494.1| tRNA pseudouridine synthase B [Candidatus Methylomirabilis oxyfera]
gi|258591354|emb|CBE67653.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Candidatus Methylomirabilis
oxyfera]
Length = 313
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 26/206 (12%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G +N++KP +SH+VV ++R+L+ + GH+GTLDP+ +G L +C+ RATR+ +
Sbjct: 4 SGVLNINKPGGMTSHDVVDVVRRLLKMRRIGHTGTLDPRATGVLPLCVGRATRIAQFLTQ 63
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----- 146
A KEY+ +L + + + K++ + +D S++ E++ P
Sbjct: 64 ADKEYLITMQLGITTDTL--DADGKVLSRTDHIDVDPARLREVLESFVGEIQQVPPLFSA 121
Query: 147 ------------------NKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
++P ++ +L + L + C GTY RT C +G
Sbjct: 122 KKHHGERLYRLARRGETVERQPVAIRIYDLTLLECDLPFVRFRVSCSKGTYARTLCDDVG 181
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
VLG GA + L R RSG ED L
Sbjct: 182 RVLGCGAHLYALTRVRSGRFLIEDAL 207
>gi|256252638|dbj|BAH97716.1| Cbf5 [Pyrodictium abyssi]
Length = 228
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAW+KR+ K GH GTLDPK +G L V ++ AT+++ GKEY + +LH V
Sbjct: 1 VAWVKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKVIGLVVHTGKEYTCVMQLHHPVPE 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+M + G+ + P + ++ + K Y L + +
Sbjct: 61 QDLRRALEMFV--------GEIYQRPPLR--SSVKRSLRTKKIYEIELL---EYNGRYAL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFR 217
+ + C+AGTY+R C +GL+LGVGA M ELRR +SG E+ GLV +
Sbjct: 108 MRVFCEAGTYMRKLCHDVGLILGVGAHMRELRRTKSGPFREQHGLVRLQ 156
>gi|336252338|ref|YP_004595445.1| rRNA pseudouridine synthase [Halopiger xanaduensis SH-6]
gi|335336327|gb|AEH35566.1| rRNA pseudouridine synthase [Halopiger xanaduensis SH-6]
Length = 303
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 49/206 (23%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILR-----------CEKTGHSGTLDP 69
P +R+ E + G VNLDKP PSSH+V W++ + ++ H+GTLDP
Sbjct: 8 PEERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVADTLAERGIDATIDQAAHAGTLDP 67
Query: 70 KTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGK 129
K +GCL + + ATRL + KEY+++ + H ++ A+
Sbjct: 68 KVTGCLPIMLGDATRLAQVFLEGSKEYVAVLECHGSLPADAE------------------ 109
Query: 130 PNENTPASYLAELEAAPNKKPTYMKS-------------NLISSDVTLSTGIIWLKCQAG 176
S +AE E +KP + ++ + ++ ++C++G
Sbjct: 110 -------SVVAEFEGPIYQKPPRKSAVARRLRVREIYDLEVLERNEADRQLLLRIRCESG 162
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRN 202
TYVR C +GL LG G M LRR
Sbjct: 163 TYVRKLCHDLGLALGTGGHMGHLRRT 188
>gi|119874639|gb|ABM05796.1| dyskerin [Saccoglossus sp. SJB-2006]
Length = 183
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 10/118 (8%)
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLI 158
+ +LHSA+EN AK ++ + + + P + L + T +S L+
Sbjct: 2 VVRLHSAIENEAKLARVIETLTGAVFQR--PPLISAVKRQL--------RVRTIYESKLL 51
Query: 159 SSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
D G++W+ C+AGTY+RT CVHMGL+LGVG QM ELRR RSGIQSE D +VT
Sbjct: 52 EYDEERHLGVVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNMVTM 109
>gi|311744149|ref|ZP_07717954.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
gi|311312504|gb|EFQ82416.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
Length = 293
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 56/216 (25%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R G V +DKPS +SH+VV ++R+ K GH+GTLDP +G L++ I+RATRL+ Q
Sbjct: 6 RGGVVVVDKPSGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATGVLVLGIERATRLLGHLQ 65
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL----------- 139
A KEY++ +L +A D G+ T AS+L
Sbjct: 66 LADKEYLATVRLGAATTT---------------DDAEGEVTSTTDASHLTAEQVEAALVP 110
Query: 140 --AELEAAP--------NKKPTYMK----------------SNLISSDVTLSTGI----I 169
E++ P + + +Y + + L++ V + G +
Sbjct: 111 LRGEIDQVPSSVSAIKVDGQRSYARVRAGEQVELKARRVTVAELVAEQVRVDHGFVDVDV 170
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ C +GTYVR +G LGVG + LRR R G
Sbjct: 171 RVTCSSGTYVRALARDVGDALGVGGHLTVLRRTRVG 206
>gi|119874641|gb|ABM05797.1| dyskerin [Saccoglossus bromophenolosus]
Length = 183
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 10/118 (8%)
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLI 158
+ +LHSA+EN AK ++ + + + P + L + T +S L+
Sbjct: 2 VVRLHSAIENEAKLARVIETLTGAVFQR--PPLISAVKRQL--------RVRTIYESKLL 51
Query: 159 SSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
D G++W+ C+AGTY+RT CVHMGL+LGVG QM ELRR RSGIQSE D +VT
Sbjct: 52 EYDEERHLGVVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNMVTM 109
>gi|407477526|ref|YP_006791403.1| tRNA pseudouridine synthase [Exiguobacterium antarcticum B7]
gi|407061605|gb|AFS70795.1| tRNA pseudouridine synthase [Exiguobacterium antarcticum B7]
Length = 302
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 33/212 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP+ +SH+ V ++R+ + +K GH+GTLDP+ +G L +C+ RAT+L +
Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64
Query: 93 GKEYISIFKLHSAVEN------------VAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
GK Y + + A V S MI + L G+ + P Y +
Sbjct: 65 GKTYAAEVTIGYATTTEDAHGETVHETPVISDSISDQMIDEVLEQLTGQIQQTPP--YYS 122
Query: 141 ELEAAPNKKPTYMKSNL---------------ISSDVTLSTGI----IWLKCQAGTYVRT 181
++ K Y + + +S+VT G+ I + C GTY+RT
Sbjct: 123 AVKVNGKKLYEYARKGIEVERPTRIVQIDALERTSEVTFEDGLCRFRIEIACGKGTYIRT 182
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG A M +LRR SG SE D +
Sbjct: 183 LAVEIGERLGYAAHMSDLRRTSSGAMSEVDAV 214
>gi|256252634|dbj|BAH97714.1| Cbf5 [Ignicoccus pacificus]
Length = 230
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIK++ EK GH GTLDPK +G L V + AT+++ +GKEY+ + + H AV+
Sbjct: 1 VAWIKKMFNLEKAGHGGTLDPKVTGVLPVALAEATKVIHYVMLSGKEYVMVIQFHDAVKE 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTP--ASYLAELEAAPNKKPTYMKSNLISSDVTLST 166
K ++ G+ + P +S +L KK Y+ +LI
Sbjct: 61 QDVIENLKYLV--------GEIYQRPPLRSSVKRQLR---TKKVYYI--HLIEFYPERRM 107
Query: 167 GIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + ++GTY+R +GL+LG GA M ELRR RSG EE LV ++
Sbjct: 108 ALVRVGSESGTYMRKIAHDLGLLLGTGAHMRELRRTRSGPFHEEYNLVRMQE 159
>gi|398814368|ref|ZP_10573049.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
gi|398036637|gb|EJL29846.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
Length = 308
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+ VA I+R+ +K GH+GTLDP +G L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQEL 65
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA---SYLAELEAAP--- 146
K Y + +L S + + +++Q +D E A S+L E+E P
Sbjct: 66 PKRYDVVMRLGSTTTTEDASGE---VVEQAGVDAASITTERIQALFESFLGEMEQVPPMF 122
Query: 147 -----NKKPTY--------------------MKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
N K Y + + IS D C GTY+RT
Sbjct: 123 SAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRT 182
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
CV +G LG A M LRR +SG E++ +
Sbjct: 183 LCVDLGRALGYPAHMKLLRRIKSGPFQEQEAI 214
>gi|399055581|ref|ZP_10743276.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
gi|398046790|gb|EJL39374.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
Length = 308
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 44/217 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+ VA I+R+ +K GH+GTLDP +G L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDL 65
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHG---KPNENTPASYLAELEAAP--- 146
K Y + +L SA + + +++Q +D + E S+L E+E P
Sbjct: 66 PKRYNVVLRLGSATTTEDASGE---VLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMF 122
Query: 147 -----NKKPTY-------------------------MKSNLISSDVTLSTGIIWLKCQAG 176
N K Y +K++ S D++ + C G
Sbjct: 123 SAVKVNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKADGDSVDISFTC-----TCSKG 177
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
TY+RT CV +G LG A M LRR +SG EE+ +
Sbjct: 178 TYMRTLCVDLGRALGYPAHMKLLRRIKSGPFVEEEAI 214
>gi|212373354|dbj|BAE96935.2| Cbf5 [Hyperthermus butylicus DSM 5456]
Length = 228
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+ K GH GTLDPK +G L V ++ T+++ GKEY+ + +LH V
Sbjct: 1 VAWIKRMFGLSKAGHGGTLDPKVTGVLPVALEEGTKVIGLVVHTGKEYMCVMQLHRPVPE 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
M + G+ + P + ++ + K Y L + +
Sbjct: 61 EELRRAINMFV--------GEIYQRPPLR--SSVKRSLRLKKIYEIELL---EYNGRYAL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + +AGTY+R C +GL+LGVGA M ELRR RSG E +GLV ++
Sbjct: 108 MRVFSEAGTYMRKLCHDIGLILGVGAHMRELRRTRSGPFRERNGLVRLQE 157
>gi|448352634|ref|ZP_21541415.1| H/ACA RNA-protein complex component Cbf5p [Natrialba hulunbeirensis
JCM 10989]
gi|445641913|gb|ELY94984.1| H/ACA RNA-protein complex component Cbf5p [Natrialba hulunbeirensis
JCM 10989]
Length = 326
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 43/221 (19%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRIL----------------------- 56
+P RT E ++ G VNLDKP PSSH+V W++ +
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVVDALAEADSDGDGDSDSNSDSDS 69
Query: 57 ------RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
++ H+GTLDPK +GCL + ATRL + KEY+++ + H ++ A
Sbjct: 70 DDDTTPTIDQAAHAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIPADA 129
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
++ + +G + + KP + S + + Y L + D L ++
Sbjct: 130 ASTVAEF---EGPI--YQKPPRKSAVSRRLRV------REMYDLEVLEAGDRQL---LLR 175
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
++C++GTYVR C +GL LG G M LRR + + D
Sbjct: 176 IRCESGTYVRKLCHDLGLALGTGGHMGHLRRTATSPFDDTD 216
>gi|256252636|dbj|BAH97715.1| Cbf5 [Staphylothermus hellenicus]
Length = 228
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIK++ E+ GH GTLDPK +G L V + AT+++ + KEY+ + +LH+ V+N
Sbjct: 1 VAWIKKMFELERAGHGGTLDPKVTGVLPVALANATKVIGNVIHTIKEYVMVIQLHAPVDN 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+K + G++ + +P + + ++ Y+ L SD + +
Sbjct: 61 --DRLRKVLKYFTGVI--YQRPPLRSSVKRVIR-----TRRIHYI-DLLEHSDRYV---L 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + C+AGTY+R +GL+LGVGA M ELRR R+G E++ LV ++
Sbjct: 108 VRVGCEAGTYMRKLAHDIGLLLGVGAHMRELRRTRTGPYKEDETLVRMQE 157
>gi|433546003|ref|ZP_20502341.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
gi|432182619|gb|ELK40182.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
Length = 308
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 44/217 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+ VA I+R+ +K GH+GTLDP +G L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDL 65
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHG---KPNENTPASYLAELEAAP--- 146
K Y + +L SA + + +++Q +D + E S+L E+E P
Sbjct: 66 PKRYNVVLRLGSATTTEDASGE---VLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMF 122
Query: 147 -----NKKPTY-------------------------MKSNLISSDVTLSTGIIWLKCQAG 176
N K Y +K + S D++ + C G
Sbjct: 123 SAVKVNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKVDGDSVDISFTC-----TCSKG 177
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
TY+RT CV +G LG A M LRR +SG EE+ +
Sbjct: 178 TYMRTLCVDLGRALGYPAHMKLLRRIKSGPFVEEEAI 214
>gi|94268660|ref|ZP_01291249.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93451515|gb|EAT02338.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 25/196 (12%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQSAG 93
+ LDKP PSS +V ++R L +K GH+GTLDP SG L+VC+ R ATRLV+ +
Sbjct: 14 IPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAGD 73
Query: 94 KEYISIFKLHSAVENVAKASK----------KKMMIKQGLLDKHGKPNENTPASYLAELE 143
KEY++ +L A + + + + + +++ L G+ + PA + +
Sbjct: 74 KEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKHQ 133
Query: 144 AAP-----------NKKPTYMKSNLISS---DVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
P K P +K + ++ D +I ++C GTY+R+ +G
Sbjct: 134 GRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQS 193
Query: 190 LGVGAQMIELRRNRSG 205
LG GA ++ELRR SG
Sbjct: 194 LGCGAHLLELRRLASG 209
>gi|119874645|gb|ABM05799.1| dyskerin [Thermobia domestica]
Length = 215
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLI 158
IFKLHS VE+ + + Q L G + P ++ ++ + Y + L
Sbjct: 2 IFKLHSGVES-------EQQVIQALNRLRGALFQRPP--LISAVKRQLRVRTVY-EIKLN 51
Query: 159 SSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
D GI W+ C+AGTYVRT CVH+GL+LGVG QM+ELRR RSGIQSE++G+VT
Sbjct: 52 EYDDVKHMGIFWVSCEAGTYVRTICVHLGLILGVGGQMLELRRVRSGIQSEKEGMVTM 109
>gi|226313016|ref|YP_002772910.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
gi|226095964|dbj|BAH44406.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
Length = 308
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+ VA I+R+ +K GH+GTLDP +G L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQEL 65
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA---SYLAELEAAP--- 146
K Y + +L S + + +++Q +D E A S+L E+E P
Sbjct: 66 PKRYDVVMRLGSTTTTEDASGE---VVEQAGVDAAWITTERIQALFESFLGEMEQVPPMF 122
Query: 147 -----NKKPTY--------------------MKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
N K Y + + IS D C GTY+RT
Sbjct: 123 SAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRT 182
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
CV +G LG A M LRR +SG E++ +
Sbjct: 183 LCVDLGRALGYPAHMKLLRRIKSGPFQEQEAI 214
>gi|402574029|ref|YP_006623372.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
gi|402255226|gb|AFQ45501.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
Length = 294
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV WI+R L+ +K GH+GTLDP +G L +C+ +ATRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWIRRSLKMKKVGHTGTLDPGVAGVLPICVGKATRLAEYITDQ 62
Query: 93 GKEYISIFKL---------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTP-------- 135
GK+YI+ K + V S K +++ L D GK ++ P
Sbjct: 63 GKKYIAEVKFGITTDTQDAYGKVIQETLPSLDKADLERILPDFTGKISQLPPLFSAVRKE 122
Query: 136 ASYLAE-------LEAAPNKKPTYMKSNLIS-SDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+L E +E P + Y K NL ++ ++C GTY+RT C +G
Sbjct: 123 GKHLYEYARKGIPIEITPREVIIY-KLNLEQWYQGEFPKAVLNIECSKGTYIRTICHDLG 181
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA M L R RSG
Sbjct: 182 QTLGCGAHMSYLVRVRSG 199
>gi|212373348|dbj|BAE96932.2| Cbf5 [Sulfophobococcus zilligii]
Length = 228
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 27/177 (15%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+ EK GH GTLDPK +G L V + +T+++ + + KEY+ + +LH VE
Sbjct: 1 VAWIKRMFNVEKAGHGGTLDPKVTGVLPVGLASSTKVIGNVIHSIKEYVMVVQLHDLVER 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-------D 161
K E + ++ P + + +S + + D
Sbjct: 61 --------------------KKVEEVVEYFKGQIYQRPPLRSSVKRSIRVKTIYEIEILD 100
Query: 162 VTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
V ++ + C GTY+R +GL+LGVGA M ELRR R+G E++ LV+ ++
Sbjct: 101 VQDKFLLLRVLCDPGTYMRKLAHDIGLILGVGAHMRELRRTRTGPFREDETLVSLQE 157
>gi|212373344|dbj|BAE96930.2| Cbf5 [Staphylothermus marinus]
Length = 228
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIK++ E+ GH GTLDPK +G L V + AT+++ + KEY+ + +LH+ V+N
Sbjct: 1 VAWIKKMFELERAGHGGTLDPKVTGVLPVALANATKVIGNVIHTIKEYVMVIQLHTPVDN 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+++ L G + P + ++ + + L SD + +
Sbjct: 61 --------ERLREVLRYFTGVIYQRPPLR--SSVKRVIRTRRIHYIDLLEHSDRYV---L 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + C+AGTY+R +GL+LGVGA M ELRR R+G E++ LV ++
Sbjct: 108 VRVGCEAGTYMRKLAHDIGLLLGVGAHMRELRRTRTGPYKEDETLVRMQE 157
>gi|357059437|ref|ZP_09120279.1| hypothetical protein HMPREF9334_01996 [Selenomonas infelix ATCC
43532]
gi|355371514|gb|EHG18858.1| hypothetical protein HMPREF9334_01996 [Selenomonas infelix ATCC
43532]
Length = 291
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+VV ++RI + ++ GH+GTLDP +G L V + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVVDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSA-------------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
K Y + A VEN S++++ + +L K E TP +Y
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGEVIERVENPMLPSEEEL---RSVLGKFVGEIEQTPPAYS 119
Query: 140 A-------ELEAAPNKKPTYMKS--------NLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
A + A M++ +L+ +D + ++ + C GTY+R+ C
Sbjct: 120 AIKVGGQRAYDLARQGTAVEMRARTVRIDRLDLVHADAAHARILVDVDCAKGTYIRSLCT 179
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LG+ A M L R R G
Sbjct: 180 DIGTALGLPATMRFLLRTRVG 200
>gi|212373366|dbj|BAE96941.2| Cbf5 [Stygiolobus azoricus]
Length = 227
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 23/181 (12%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K++ K GH GTLDPK +G L + ++ AT+L+ AGKEY+ I ++H
Sbjct: 3 WVKKMFNLNKVGHGGTLDPKVTGVLPIGMENATKLMSLISKAGKEYVCIMQVHCDY---- 58
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG--- 167
K + K ++ Q + + + +P + K K + S D+ + G
Sbjct: 59 KMDELKEIVNQFIGEIYQRP------------PVRSSVKRRTRKRRVYSIDILETEGRLV 106
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFE 223
++ + + GTY+R C +G++LG GA M ELRR RSGI +E+ LVT + +M++
Sbjct: 107 LMKIASEPGTYMRKICHDIGILLGCGAHMRELRRTRSGIFTEDSNLVTLHEISEALYMYK 166
Query: 224 H 224
H
Sbjct: 167 H 167
>gi|212373338|dbj|BAE96927.2| Cbf5 [Caldisphaera lagunensis DSM 15908]
Length = 228
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+L +K GH+GTLDP+ SG L V + T+++ + K Y+ + +LH V+
Sbjct: 1 VAWIKRLLNVDKAGHAGTLDPRVSGVLPVTLGHMTKIIGYITHSNKTYVCVMQLHKDVD- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
+ +K+ + D G + P + K + ++ V L+
Sbjct: 60 -------QNELKRVINDFIGTIYQKPPIRSHVKRTLRTRKIFNITINEIVDRKVLLT--- 109
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ +AGTY+R C +GL+LG+GA M ELRR ++G +E+ LVT +
Sbjct: 110 --IESEAGTYMRKLCWDIGLILGIGAHMRELRRIKTGPFNEDYYLVTMQD 157
>gi|212373368|dbj|BAE96942.2| Cbf5 [Sulfolobus acidocaldarius]
Length = 227
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K++ K GH GTLDPK +G L + ++ AT+L+ +GKEYI + ++H V+
Sbjct: 3 WVKKLFNITKAGHGGTLDPKVTGVLPIGLENATKLMNYISKSGKEYICLLQMHCNVDQ-- 60
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
+ K +I Q + + + KP + M+ LI ++
Sbjct: 61 --KELKEIISQFVGEIYQKPPVRSSVKRRIRKRRIYAIDILDMQDKLI---------LLR 109
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ AGTY+R C +G++ G G+ M ELRR RSGI +E+ +VT ++
Sbjct: 110 VQSDAGTYMRKLCHDVGVIAGCGSHMRELRRIRSGIFTEKTNMVTLQE 157
>gi|212373358|dbj|BAE96937.2| Cbf5 [Pyrolobus fumarii]
Length = 228
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+ K GH GTLDPK +G L V ++ AT+++ KEYI + +LH VE
Sbjct: 1 VAWIKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKIIGMVVHTPKEYICVMQLHEPVEE 60
Query: 109 VAKASKKKMM--IKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLST 166
KK++ IK + +P + ++ + K Y L + T
Sbjct: 61 ------KKLLEAIKVFTSTIYQRPPLRS------SVKRSLRTKTIYEIELL---EYTGRY 105
Query: 167 GIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + C GTY+R C +GL LGVGA M ELRR +SG E GLV +
Sbjct: 106 ALMRVLCDPGTYMRKLCHDIGLYLGVGAHMRELRRTKSGPFREAYGLVKLQD 157
>gi|433608716|ref|YP_007041085.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
gi|407886569|emb|CCH34212.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
Length = 298
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 28/203 (13%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
++ G V +DKP +SH+VVA ++RIL K GH+GTLDP +G L++ ++RAT+L+
Sbjct: 8 VQPGLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHL 67
Query: 90 QSAGKEYISIFKLHSA---------VENVAKASK-KKMMIKQGLLDKHGKPNENTPASYL 139
K Y+S +L SA V + + AS + I+ G+ G P + P++
Sbjct: 68 ALDSKAYLSTIRLGSATTTDDAEGEVLSTSDASAVAEDAIRAGVAKLTG-PIQQVPSAVS 126
Query: 140 A---------------ELEAAPNKKPTYMKSNLIS--SDVTLSTGIIWLKCQAGTYVRTY 182
A E P + T + +++S + + + ++C +GTYVR
Sbjct: 127 AVKIDGKRAYARVRDGETVEIPARPVTVHRFDVLSIRREGEATELDVMVECSSGTYVRAL 186
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 187 ARDLGADLGVGGHLAALRRTRVG 209
>gi|212373360|dbj|BAE96938.2| Cbf5 [Acidianus infernus]
Length = 227
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 13/168 (7%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
WIK++ K GH GTLDPK SG L + ++ AT+L+ AGKEYI + + H V+
Sbjct: 3 WIKKMFNLNKVGHGGTLDPKVSGVLPIGLENATKLMTYITKAGKEYICVMETHEKVD--- 59
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
++K+ + G + P + ++ + + L D L ++
Sbjct: 60 -----LSIVKKIAEEFKGTIYQRPPVR--SSVKRRLRTRKVFDIEVLEGKDDKLF--LLR 110
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + GTY+R C MG++LG+GA M ELRR RSGI +E GLVT ++
Sbjct: 111 ISSEPGTYMRKICHDMGIILGIGAHMRELRRIRSGIFTES-GLVTLQE 157
>gi|212373334|dbj|BAE96925.2| Cbf5 [Acidilobus aceticus]
Length = 228
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 19/172 (11%)
Query: 50 AWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109
AW+KR+L ++ GH GTLDPK +G L V +D T+++ S + K Y+ + +LH V
Sbjct: 2 AWVKRLLGVKRAGHGGTLDPKVTGVLPVALDHMTKIMGSVVHSRKAYVCVMQLHGDV--- 58
Query: 110 AKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG-- 167
S+KK+ ++ + G + P N K + S +V G
Sbjct: 59 ---SEKKL--REVAEEFTGTIYQRPPVR--------SNVKRALRTRRIFSLEVLEVRGRL 105
Query: 168 -IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ ++ GTY+R C MGLVLGVGA M ELRR ++G E+ LVT ++
Sbjct: 106 ALLRVESDPGTYMRKLCWDMGLVLGVGAHMRELRRIKTGPFDEDHNLVTLQE 157
>gi|345857838|ref|ZP_08810259.1| tRNA pseudouridine synthase B [Desulfosporosinus sp. OT]
gi|344329085|gb|EGW40442.1| tRNA pseudouridine synthase B [Desulfosporosinus sp. OT]
Length = 322
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV W++RIL+ +K GH+GTLDP +G L +C+ + TRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWMRRILKTKKIGHTGTLDPGVAGVLPLCVGKGTRLAEYITEQ 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH---------GKPNENTPASYLA--- 140
GK Y++ + K + L + GK ++ TP Y A
Sbjct: 63 GKAYLAEVAFGITTDTQDAFGKTTQVTSTDLSQSNLESVLPHFVGKISQ-TPPMYSAVRR 121
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
++E AP + Y + I+ ++C GTY+RT C +G
Sbjct: 122 EGKHLYEYARQGIDIEIAPREVSIYKLELKQWYEREFPRAILNIECSKGTYIRTLCHDLG 181
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA M L R RSG
Sbjct: 182 QALGCGAHMSNLLRIRSG 199
>gi|374582842|ref|ZP_09655936.1| tRNA pseudouridine 55 synthase [Desulfosporosinus youngiae DSM
17734]
gi|374418924|gb|EHQ91359.1| tRNA pseudouridine 55 synthase [Desulfosporosinus youngiae DSM
17734]
Length = 306
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP+ +S +VV WI++ L+ +K GH+GTLDP +G L +C+ + TRL +
Sbjct: 3 GIINVLKPTGMTSSDVVVWIRKTLKLKKVGHTGTLDPGVAGVLPICVGKGTRLAEYITEQ 62
Query: 93 GKEYISIFKLHSAVENVAKASK---------KKMMIKQGLLDKHGKPNENTPASYLAELE 143
GK YIS + K K+ +++ L GK ++ P E
Sbjct: 63 GKAYISEVTFGVTTDTQDSYGKVIREISPRLKRKDLERILPGFIGKVSQVPPMYSAVRKE 122
Query: 144 AA--------------PNKKPTYMKSNLIS-SDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
P+++ + + NL + I+ ++C GTY+RT C MG
Sbjct: 123 GKHLYEYARQGISIDRPSREVSIYRLNLKEWFEEEYPKAILEIECSKGTYIRTLCHDMGQ 182
Query: 189 VLGVGAQMIELRRNRSG 205
VLG GA M L R RSG
Sbjct: 183 VLGCGAHMSYLLRVRSG 199
>gi|212373342|dbj|BAE96929.2| Cbf5 [Ignicoccus islandicus]
Length = 230
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAWIKR+ +K GH GTLDPK +G L V AT+++ +GKEY+ + + H A
Sbjct: 1 VAWIKRMFNLDKAGHGGTLDPKVTGVLPVAFKEATKVIHYVMLSGKEYVMVIQFHDAFNE 60
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTP--ASYLAELEAAPNKKPTYMKSNLISSDVTLST 166
K ++ G+ + P +S +L KK Y+ +LI
Sbjct: 61 KDVIENLKYLV--------GEIYQRPPLRSSVKRQLR---TKKVYYI--HLIEFYPERRM 107
Query: 167 GIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + ++GTY+R +GL++G+GA M ELRR RSG E LVT ++
Sbjct: 108 VMVRVGSESGTYMRKIAHDLGLLMGIGAHMRELRRTRSGPFHEGYNLVTMQE 159
>gi|381183638|ref|ZP_09892357.1| tRNA pseudouridine synthase B [Listeriaceae bacterium TTU M1-001]
gi|380316471|gb|EIA19871.1| tRNA pseudouridine synthase B [Listeriaceae bacterium TTU M1-001]
Length = 277
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL+ +K GH+GTLDP+ G L +C+ RAT+L +
Sbjct: 3 GIIPLFKERGMTSHDCVFKMRKILKTKKVGHTGTLDPEVEGVLPICVGRATKLAEYITDQ 62
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
GKEY++ L + E+ +K +IK+ + L K E P Y A +
Sbjct: 63 GKEYVATVTLGVSTTTEDATGEVVEKEIIKEAISEEKLDAVLQKLTGEIEQVPPMYSA-V 121
Query: 143 EAAPNKKPTYMKSN----------LISSDVTLSTG---------IIWLKCQAGTYVRTYC 183
+ A K Y ++ I S V L G I + C GTY+RT
Sbjct: 122 KVAGKKLYEYARAGQTVTRPRRVVQIHSLVRLDQGELTATSPSFQIRISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG+ A M L R +SG +ED L
Sbjct: 182 VMIGEELGLPAHMASLERTKSGFFQKEDCL 211
>gi|256252648|dbj|BAH97721.1| Cbf5 [Acidianus brierleyi]
Length = 225
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K++ K GH GTLDPK +G L + ++ AT+++ AGKEYI + ++H +E
Sbjct: 3 WVKKMFNINKVGHGGTLDPKVTGVLPIGLENATKIMNYVTEAGKEYICVMQVHCDIE--- 59
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLS-TGII 169
K ++K + GK + P + ++ ++ + N I T + ++
Sbjct: 60 -----KDLLKSIIEKFKGKIYQRPP------VRSSVKRRLRFRTVNEIELLETYNRMALL 108
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + GTY+R C G++LG GA M ELRR RSGI +E++ LVT ++
Sbjct: 109 RISSEPGTYMRKICHDAGILLGCGAHMRELRRIRSGIFTEKN-LVTLQE 156
>gi|212373377|dbj|BAE96946.2| Cbf5 [Caldivirga maquilingensis]
Length = 227
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 21/177 (11%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAW+K++L K GHSGTLDP SG L + + +T++++ + KEY+ + LHS V+
Sbjct: 1 VAWVKKLLNISKAGHSGTLDPGVSGVLPIALGDSTKVLQGISNVDKEYVGVMLLHSTVD- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG- 167
+ +K + GK + P L++A ++ + S D+ G
Sbjct: 60 -------QERVKAVFREFTGKIYQRPP------LKSAVKRRIRV--KTVYSLDIMEFDGR 104
Query: 168 --IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED--GLVTFRQEH 220
+ ++GTY+R C +G VLGVGA M ELRR R G EE+ L T R+ +
Sbjct: 105 YVLFKADVESGTYIRKLCYDIGEVLGVGASMRELRRTRVGCFREENTVNLNTLREAY 161
>gi|295696161|ref|YP_003589399.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
gi|295411763|gb|ADG06255.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
Length = 300
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 26/207 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP+ +SH+VV ++R L + GH+GTLDP +G L++C+ +ATR+ +
Sbjct: 3 GVLVLDKPAGLTSHDVVGRVRRWLGIRRIGHTGTLDPDATGVLVLCVGKATRIAEYLSGE 62
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
KEYI + L +A +E + S +++ G+ + PA +
Sbjct: 63 DKEYIGVLALGAATDTDDSSGEVIERMPSPSADPEALRRAAAALTGEILQRPPAFSAVRV 122
Query: 143 ------EAAPNKKPTYM---KSNLISSDVTLSTG-------IIWLKCQAGTYVRTYCVHM 186
E A +P + K + DV + T + C GTYVR+ C +
Sbjct: 123 GGKRAYELARAGRPADLPARKVQVYRFDVGMPTPRGELLEVPFHVACSKGTYVRSLCRDL 182
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G+ +G+ A M LRR R G + E L
Sbjct: 183 GVKVGIPAHMASLRRVRQGPFTVEQAL 209
>gi|332799227|ref|YP_004460726.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|438002355|ref|YP_007272098.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|332696962|gb|AEE91419.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|432179149|emb|CCP26122.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
Length = 300
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP+ +SH+V+ ++R+L+ +K GHSGTLDP +G L V I +AT+ ++
Sbjct: 3 GVINVLKPAGMTSHDVINHLRRLLKIKKIGHSGTLDPAATGVLPVFIGKATKAIEFFMED 62
Query: 93 GKEYIS----------------IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
KEYIS I K+++ N+ K K + ++K+ + P +
Sbjct: 63 DKEYISEMRLGVTTDTGDFQGNIIKIYNGPFNIGKI-KFEEVLKEFTGEIMQIPPMYSAV 121
Query: 137 SY----LAEL-------EAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
Y L EL E P K Y +L+ D + II + C GTY+RT C
Sbjct: 122 HYKGKKLYELARQGITVERRPRKIYIY-SIDLLEFDE--KSAIINVACSKGTYIRTLCED 178
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG GA + +L R RSG ED L
Sbjct: 179 IGNKLGCGACLSDLIRTRSGSFKIEDSL 206
>gi|197117694|ref|YP_002138121.1| tRNA pseudouridine 55 synthase [Geobacter bemidjiensis Bem]
gi|197087054|gb|ACH38325.1| tRNA pseudouridine 55 synthase [Geobacter bemidjiensis Bem]
Length = 295
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 22/203 (10%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+ +DKP+ +SH++V+ ++R + +K GH+GTLDP +G L V + T+ ++ +
Sbjct: 4 GFFVIDKPAGVTSHDIVSKVRRAINQKKVGHTGTLDPFATGVLPVAVGEGTKAIQFLDES 63
Query: 93 GKEYISIFKLHSAVE--------------NVAKASKKKMMIKQGL-LDKHGKP------N 131
KEY ++ +L A + + +A+ + ++ Q L L K P
Sbjct: 64 EKEYRAVMRLGIATDTQDLTGQVLAERDWSQLEAADLERLVPQFLGLQKQMPPMFSAIKQ 123
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSD-VTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P LA ++ ++ + +S D + L + C GTYVRT +G L
Sbjct: 124 GGVPLYKLARKGIEVEREAREVEIHSLSFDWIRLPEACFTVTCSRGTYVRTLACDIGEAL 183
Query: 191 GVGAQMIELRRNRSGIQSEEDGL 213
G GA ++ELRR RSG+ E+D +
Sbjct: 184 GCGAHLLELRRTRSGLFREKDAI 206
>gi|406888274|gb|EKD34805.1| hypothetical protein ACD_75C02179G0004 [uncultured bacterium]
Length = 257
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 33/213 (15%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQ 90
AG +DKP + +S VV+ I+RILR +K GH+GTLDP +G LIVC R ATR++
Sbjct: 18 AGVFLIDKPPDITSFGVVSRIRRILRMKKVGHAGTLDPFATGLLIVCAGRPATRIISRFM 77
Query: 91 SAGKEYISIFKL--HSAVENVAKASKKK--------MMIKQGLLDKHGK----------- 129
KEY++ +L +A + A + MI++ L G+
Sbjct: 78 EGEKEYLATLRLGVETATYDTEGAVTARRSVGPLSAAMIEECLGRFRGRLLQVPPAYSAL 137
Query: 130 PNENTPASYLAE--LEAAPNKKPTYMKSNLISSD-------VTLSTGIIWLKCQAGTYVR 180
++ P Y A +E A + ++ L+ +D S G I + C GTY+R
Sbjct: 138 KHKGKPLYYYARKGIEIAKEAREVDIR-QLVRTDGDHPLSGEEASLG-IRVVCSKGTYIR 195
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
T +G LG GA +++LRR RSG + +GL
Sbjct: 196 TLAADIGRELGCGAHLVQLRRIRSGSFTVAEGL 228
>gi|251797394|ref|YP_003012125.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
gi|247545020|gb|ACT02039.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
Length = 300
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 42/207 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++RI+R ++ GH+GTLDP +G L +C+ R+TR+V+ Q
Sbjct: 3 GIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQER 62
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
K Y ++ +L +A + V + ++ ++ +L S++ E++ P
Sbjct: 63 PKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVL--------QVLQSFVGEIDQVP 114
Query: 147 --------------------------NKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTY 178
++K T + +L++ D+ C GTY
Sbjct: 115 PMFSAVKVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTY 174
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
+RT CV +G LGV A M EL R SG
Sbjct: 175 IRTLCVDIGRALGVPAAMAELTRTMSG 201
>gi|51246462|ref|YP_066346.1| tRNA pseudouridine synthase B [Desulfotalea psychrophila LSv54]
gi|54036456|sp|Q6AJY7.1|TRUB_DESPS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50877499|emb|CAG37339.1| probable tRNA pseudouridine synthase B [Desulfotalea psychrophila
LSv54]
Length = 246
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 32/212 (15%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQ 90
AG +DKP +S VV+ ++RIL +K GH+GTLDP +G L+VC R AT+++ S
Sbjct: 8 AGIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFM 67
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-ELEAAP--- 146
KEYI+ L E + + G L H + E A + +++ P
Sbjct: 68 DGEKEYIATLCLGVETETQDPEGAEIARKQVGFL--HAETIETCLAGFKGTQMQVPPAYS 125
Query: 147 ----NKKPTYM---KSNLISSDV---------TLSTG---------IIWLKCQAGTYVRT 181
KP Y K + D L G +I ++C G+Y+RT
Sbjct: 126 ALKHQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRT 185
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G VLG GA + +LRR +SG + ED L
Sbjct: 186 LGSDIGKVLGCGAHLTDLRRTKSGFFNVEDAL 217
>gi|383754440|ref|YP_005433343.1| putative tRNA pseudouridine synthase B [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366492|dbj|BAL83320.1| putative tRNA pseudouridine synthase B [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 295
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 27/207 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G++N+ KP SSH++V +++R+L +K GH+GTLDP +G L V + ATRL++ +
Sbjct: 8 SGFLNILKPPGMSSHDIVGYVRRVLHTKKVGHAGTLDPAATGVLPVAVGTATRLIEYLEL 67
Query: 92 AGKEYISIFKLHSAVENVAKASK-----------KKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + KL A ++ + K I+ L GK + PA
Sbjct: 68 TDKTYRAEIKLGIATDSGDDTGRILTSQTDWSDFDKSEIEAVLEKFTGKIRQTPPAHSAI 127
Query: 141 ELEA--------------APNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
++ P+++ T + L+S + +I C GTY+R+ C +
Sbjct: 128 KINGQRACDLLRAGKEVEVPSREITIYRLELLSYSHDML--LIDCDCSKGTYIRSLCQDI 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G LGV A M L R R G S E+ L
Sbjct: 186 GEALGVPATMAFLLRRRVGDFSVENAL 212
>gi|322418693|ref|YP_004197916.1| tRNA pseudouridine synthase B [Geobacter sp. M18]
gi|320125080|gb|ADW12640.1| tRNA pseudouridine synthase B [Geobacter sp. M18]
Length = 295
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+ +DKP+ +SH++V+ ++R + +K GH+GTLDP +G L V + T+ ++ +
Sbjct: 4 GFFVIDKPAGVTSHDIVSKVRRAINQKKVGHTGTLDPFATGVLPVAVGEGTKAIQFLDES 63
Query: 93 GKEYISIFKLHSAVE---------------NVAKASKKKMMIKQGLLDKHGKP------N 131
KEY ++ +L A + ++ A ++++ + L K P
Sbjct: 64 EKEYRAVLRLGIATDTQDLTGQVIAQRDWTHLTPADLERLVPRFLGLQKQMPPMFSAIKQ 123
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSD-VTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P LA ++ ++ +S D + L ++C GTYVRT +G L
Sbjct: 124 GGVPLYRLARKGIEVEREAREVEIYSLSFDWIRLPEASFTVRCSRGTYVRTLACDIGEAL 183
Query: 191 GVGAQMIELRRNRSGIQSEEDGL 213
G GA ++ELRR RSG+ E D +
Sbjct: 184 GCGAHLLELRRTRSGLFKEADAI 206
>gi|386852144|ref|YP_006270157.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
gi|359839648|gb|AEV88089.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
Length = 288
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 30/198 (15%)
Query: 37 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
+DKPS +SH+VVA I+R+ + + GH GTLDP +G LI+ ++RATRL+ A K Y
Sbjct: 2 VDKPSGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGAEKSY 61
Query: 97 ISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA------ 140
+ +L A V A I+ GL + G+ ++ P++ A
Sbjct: 62 AATIRLGEATVTDDAEGEVTATVPVAGVADAAIRAGLAAQVGEIDQ-VPSAVSAIKINGE 120
Query: 141 ---------ELEAAPNKKPTYMKSNLIS----SDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E A P ++ T + +++ +D + + + C +GTY+R +G
Sbjct: 121 RAYKRVRDGETVAIPARRVTVFRLDVLDIRRPADRDVIDVDVDVTCSSGTYIRAIARDLG 180
Query: 188 LVLGVGAQMIELRRNRSG 205
LGVG + LRR G
Sbjct: 181 TALGVGGHLTALRRTAVG 198
>gi|335429525|ref|ZP_08556423.1| tRNA pseudouridine synthase B [Haloplasma contractile SSD-17B]
gi|334889535|gb|EGM27820.1| tRNA pseudouridine synthase B [Haloplasma contractile SSD-17B]
Length = 301
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 31/205 (15%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R G + L+KP +SH+ V+ ++RIL +K GH+GTLDP +G L +CI AT++++ Q
Sbjct: 3 RNGILLLNKPKKMTSHDCVSKMRRILGIKKIGHTGTLDPNVTGVLPLCIGEATKILQFLQ 62
Query: 91 SAGKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLD---KHGKPNENTPASYLA 140
+ KEYI+ L + + + K + +LD + + P Y A
Sbjct: 63 ADRKEYIAEIYLGKKTTTEDLDGDTIEEDHSDKSFTRTEILDVLSQFSGEIKQVPPMYSA 122
Query: 141 ----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVR 180
E+E P +K T + L+S++ S I K C GTY+R
Sbjct: 123 VKVNGKKLYEYARKGIEVE-RPMRKVTIHEIELLSTEEEFSGTQIKFKIRALCSKGTYIR 181
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
T V +G L V A M EL R RSG
Sbjct: 182 TLAVDIGKALSVPACMSELTRTRSG 206
>gi|256252646|dbj|BAH97720.1| Cbf5 [Acidianus ambivalens]
Length = 227
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
WIK++ K GH GTLDPK SG L + ++ AT+L+ AGKEYI + + H V+
Sbjct: 3 WIKKMFNLSKVGHGGTLDPKVSGVLPIGLENATKLMTYITKAGKEYICVMETHEKVD--- 59
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
++K+ + G + P + ++ + + L D L ++
Sbjct: 60 -----LSIVKKIAEEFKGTIYQRPPVR--SSVKRRLRTRKVFDIEVLEGKDDKLF--LLR 110
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + GTY+R C MG++LG GA M ELRR RSGI +E GL T ++
Sbjct: 111 ISSEPGTYMRKICHDMGIILGTGAHMRELRRIRSGIFTES-GLFTLQE 157
>gi|212373373|dbj|BAE96944.2| Cbf5 [Sulfolobus shibatae]
Length = 227
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K++L K GH GTLDPK +G L + I+ AT+++ GKEY+ + ++H +
Sbjct: 3 WVKKMLNVSKAGHGGTLDPKVTGVLPIGIENATKIMNYISKGGKEYVCVMQVHCEYDK-- 60
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
+ +IK + + +P + + + + + M L+ +
Sbjct: 61 --EELTKIIKSFEGEIYQRPPVRSSVKRRLRVRSIYDIEILDMDKKLV---------LFR 109
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
+ C +GTY+R C +G++ G GA M ELRR RSGI +E LV
Sbjct: 110 VSCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKL 155
>gi|218190473|gb|EEC72900.1| hypothetical protein OsI_06724 [Oryza sativa Indica Group]
Length = 274
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 20 SPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCI 79
SPL++ I +++ G +NL+K SN SHEV+ W K +L EKT H+GTLDPK +G LIVC+
Sbjct: 18 SPLKQPIAKHLCYGVINLNKLSNLLSHEVITWNKHLLHIEKTSHNGTLDPKVTGNLIVCV 77
Query: 80 DRATRLVKS---QQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
DRATRLVKS + A + Y + + +K I+ LL P
Sbjct: 78 DRATRLVKSWYCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILL--------RNPL 129
Query: 137 SYLAELEAAPN 147
++ ++E +PN
Sbjct: 130 AFQPKIENSPN 140
>gi|224540974|ref|ZP_03681513.1| hypothetical protein CATMIT_00125 [Catenibacterium mitsuokai DSM
15897]
gi|224526125|gb|EEF95230.1| tRNA pseudouridine synthase B [Catenibacterium mitsuokai DSM 15897]
Length = 277
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KP +SH+VV ++RI+ +K GH GTLDP +G L+V I++AT+ ++ S
Sbjct: 3 GIILINKPQGMTSHDVVNRVRRIMHTKKVGHCGTLDPMATGVLVVGINKATKAMQFLMSE 62
Query: 93 GKEYISIFKLHSAVENV---AKASKKKMMIKQGLLDK----HGKPNENTPASYLA----- 140
KEY + KL SA + K + K LD+ + P Y A
Sbjct: 63 EKEYRATLKLGSATDTYDSEGKVLETKPFTGYDHLDEVLSSFKGDSMQKPPMYSAIKING 122
Query: 141 -----------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLV 189
E+E P + K +L+++ T I +KC GTY+R+ CV +G
Sbjct: 123 KKLYEYAREGIEVEV-PERPIAIYKLDLVNAHDDEIT--IDVKCSKGTYIRSLCVDIGKA 179
Query: 190 LGVGAQMIELRRNRSG 205
LG A M L RN+SG
Sbjct: 180 LGYPAHMTALVRNQSG 195
>gi|284108779|ref|ZP_06386444.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
gi|283829853|gb|EFC34144.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
Length = 325
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP+ +SH+VVA ++R+L+ K GH+GTLDP +G L V + + TRL
Sbjct: 20 GVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLHW 79
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
KEY ++ +L + V + + + + + HG+ + P ++
Sbjct: 80 DKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVKI 139
Query: 143 EAAPNKKPTYMKSNL--ISSDVT----------LSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P K L S VT L + ++C GTY+RT C +G VL
Sbjct: 140 GGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRVL 199
Query: 191 GVGAQMIELRRNRSG 205
GVG + L R+R G
Sbjct: 200 GVGGHLSRLIRSRVG 214
>gi|117928719|ref|YP_873270.1| tRNA pseudouridine synthase B [Acidothermus cellulolyticus 11B]
gi|117649182|gb|ABK53284.1| tRNA pseudouridine synthase B [Acidothermus cellulolyticus 11B]
Length = 303
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 30/201 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+VVA ++R+ + GH+GTLDP +G LIV + +ATRL+
Sbjct: 6 GLLVVDKPAGITSHDVVARVRRLTGQRRVGHAGTLDPMATGVLIVGVGKATRLLGYLSGC 65
Query: 93 GKEYISIFKL-------HSAVENVAKASKKKM---MIKQGLLDKHGKPNENTPASYLAEL 142
KEY +I +L + E V +A +++ +++ L G+ ++ PA ++
Sbjct: 66 DKEYAAIIRLGMTTSTDDADGEPVRRAGVERLSETAVREALTRFVGEFDQRPPAFSAVKV 125
Query: 143 EAA--------------PNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVRTYCV 184
P ++ + L S T G + L C AGTY+R+
Sbjct: 126 AGRRAYARARAGEDVVLPARRVRVDRIELRGSQRT--DGFLDLDVTIACSAGTYIRSLAR 183
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G +LGVG + LRR R G
Sbjct: 184 DLGELLGVGGHLAALRRTRVG 204
>gi|451812261|ref|YP_007448715.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778163|gb|AGF49111.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 237
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 27/202 (13%)
Query: 29 YIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKS 88
Y G+ LDKP+ +S+ + ++R L +K GH+GTLDP +G L+ C +AT+
Sbjct: 4 YQLDGFFLLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKATKKSNI 63
Query: 89 QQSAGKEYISIFKLHSAVEN-------VAKASKKKMM----IKQGLLDKHGKPNENTPAS 137
+A K YI+ KL + + K+S K + I++ L+ G+ ++ P
Sbjct: 64 FLNASKSYIATIKLGEETDTGDLTGKVIKKSSDFKFIDASSIEKALISFIGEIDQVPPMY 123
Query: 138 YLAELEAAP--------------NKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ P ++K T NLI+S T I L C GTYVRT
Sbjct: 124 SAIKFNGIPLYKYARTGVDVYRDSRKVTIYNINLINS--TDDIFEIELSCSKGTYVRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+G LG A +I+LRR R G
Sbjct: 182 QDIGRKLGCFAHLIKLRRTRVG 203
>gi|350567623|ref|ZP_08936031.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
gi|348662386|gb|EGY79049.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
Length = 298
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 38/206 (18%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G + +DKP+ +SH+VV ++R++ K GH+GTLDP +G L+V ++RATRL+
Sbjct: 9 SGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMATGVLVVGVNRATRLLGHLSL 68
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL---AELEAAP-- 146
K+Y + KL V+ + G +D G +E A+ E++ P
Sbjct: 69 QDKDYTATMKL-----GVSTVTDDAEGDSTGAIDASGIDDEAIIAAMARQTGEIQQVPTA 123
Query: 147 ------NKKPTYMKSNLISSDVTL-----------STGI----------IWLKCQAGTYV 179
N + Y K DV L +T I + + C +GTYV
Sbjct: 124 VSAIKINGQRAYAKVRA-GEDVVLKPRAVTVSRFEATEIRRHGEVIDVDVEVTCSSGTYV 182
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 183 RALARDVGADLGVGGHLTALRRTRIG 208
>gi|374997041|ref|YP_004972540.1| tRNA pseudouridine 55 synthase [Desulfosporosinus orientis DSM 765]
gi|357215407|gb|AET70025.1| tRNA pseudouridine 55 synthase [Desulfosporosinus orientis DSM 765]
Length = 294
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 25/198 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV WI+++L+ +K GH+GTLDP +G L +C+ + TRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWIRKVLKIKKVGHTGTLDPGVAGVLPICVGKGTRLAEFITDQ 62
Query: 93 GKEYIS--IFKLHS--------AVENVAKASKKKMMIKQGLLDKHGKPNENTP------- 135
GKEYI+ F + + +E + +K ++ L G+ ++ P
Sbjct: 63 GKEYIAEVTFGVSTDTQDSYGKVIEETSSPKLRKSDVEAVLPKFQGEISQIPPMFSAVRK 122
Query: 136 -ASYLAE-------LEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+L E +E A + + S + I+ ++C GTY+RT C +G
Sbjct: 123 EGKHLYEYARQGISVERALRQVTIHRLSLDKWYEGNHPKAILTIECSKGTYIRTICHDLG 182
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA M L R RSG
Sbjct: 183 QALGCGAHMSYLVRVRSG 200
>gi|15827813|ref|NP_302076.1| tRNA pseudouridine synthase B [Mycobacterium leprae TN]
gi|221230290|ref|YP_002503706.1| tRNA pseudouridine synthase B [Mycobacterium leprae Br4923]
gi|13959607|sp|Q9Z5I4.1|TRUB_MYCLE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|4455683|emb|CAB36580.1| possible tRNA pseudouridine synthase B [Mycobacterium leprae]
gi|13093365|emb|CAC30497.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae]
gi|219933397|emb|CAR71641.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae Br4923]
Length = 320
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA +RI + GH+GTLDP +G L++ +DRAT+++ A
Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
Query: 93 GKEYISIFKL--------------------HSAVENVAKA-SKKKMMIKQ-----GLLDK 126
KEY++ +L H E +A A + + IKQ +
Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
Query: 127 HGKPNEN-TPASYLAELEAAPNK-----------KPTYMKSNLISSDVTLSTGIIWLKCQ 174
G+ ++ EL+A P + P +++I DV ++C
Sbjct: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVE-------VECS 185
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+GTY+R +G GVG + LRR R G
Sbjct: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVG 216
>gi|237734572|ref|ZP_04565053.1| tRNA pseudouridine synthase B [Mollicutes bacterium D7]
gi|229382392|gb|EEO32483.1| tRNA pseudouridine synthase B [Coprobacillus sp. D7]
Length = 283
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KPS +SH+VV ++RIL+ +K GH GTLDP +G L+VC+++AT++++ S
Sbjct: 6 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 65
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY++ L ++ + AS K + K+ H N A + + + K P Y
Sbjct: 66 SKEYVATLSLGTSTDTY-DASGKIIETKEF----HALDNNEIVACFNNFIGSQEQKPPIY 120
Query: 153 --MKSN---------------LISSDVT--------LSTGIIWLK--CQAGTYVRTYCVH 185
+K N + + VT + +I K C GTY+R+ C
Sbjct: 121 SAIKVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYD 180
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEED 211
+ LG M +L R +SG S E+
Sbjct: 181 LAKALGYPGHMKDLIRTKSGNFSLEN 206
>gi|320159632|ref|YP_004172856.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
gi|319993485|dbj|BAJ62256.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
Length = 307
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 34/226 (15%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G + +DKP +SH+VV I++ + GH+GTLDP+ SG L+V I A RL + +
Sbjct: 13 SGVLVVDKPVGMTSHDVVQIIRKGTNIRRAGHTGTLDPRASGVLVVLIGPAVRLSEYVSA 72
Query: 92 AGKEYISIFKLHSAVE------------NVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
+ K Y +I +L ++ + +V S + +Q L G+ E P Y
Sbjct: 73 SDKRYQAIIRLGTSTDTYDADGRITGSGSVPVESITEEQFEQALQQFVGE-IEQVPPPYS 131
Query: 140 A----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
A E++ AP K Y L + ++ + C +GTYVR+
Sbjct: 132 AIKVQGRKAYEMAREGEEVDLAPRKIKVYSLELL---EWAPPEAVVDIYCSSGTYVRSLA 188
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
+G VLG GA ++ LRR +SG + D + + F+ TW
Sbjct: 189 HDLGQVLGCGAHLVGLRRTKSGRFTLRDAVPLRKLREAFQD--GTW 232
>gi|167756862|ref|ZP_02428989.1| hypothetical protein CLORAM_02411 [Clostridium ramosum DSM 1402]
gi|167703037|gb|EDS17616.1| tRNA pseudouridine synthase B [Clostridium ramosum DSM 1402]
Length = 282
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KPS +SH+VV ++RIL+ +K GH GTLDP +G L+VC+++AT++++ S
Sbjct: 5 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 64
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY++ L ++ + AS K + K+ H N A + + + K P Y
Sbjct: 65 SKEYVATLSLGTSTDTY-DASGKIIETKEF----HALDNNEIVACFNNFIGSQEQKPPIY 119
Query: 153 --MKSN---------------LISSDVT--------LSTGIIWLK--CQAGTYVRTYCVH 185
+K N + + VT + +I K C GTY+R+ C
Sbjct: 120 SAIKVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYD 179
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEED 211
+ LG M +L R +SG S E+
Sbjct: 180 LAKALGYPGHMKDLIRTKSGNFSLEN 205
>gi|357039353|ref|ZP_09101147.1| tRNA pseudouridine synthase B [Desulfotomaculum gibsoniae DSM 7213]
gi|355358252|gb|EHG06020.1| tRNA pseudouridine synthase B [Desulfotomaculum gibsoniae DSM 7213]
Length = 306
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLV------ 86
G +N+ KP +SH+VV +++++ +KTGH+GTLDP +G L VC+ +AT+++
Sbjct: 5 GILNVLKPPGMTSHDVVGYVRKVTGQKKTGHTGTLDPGAAGVLPVCLGKATKIIQFLPDD 64
Query: 87 ---KSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY----- 138
+++ + GK + +++ I+Q L G N+ P +
Sbjct: 65 KCYRAEITFGKSTSTQDSFGDVLKSDGAYGINATDIEQELKSFKGWINQIPPMTSAIKHH 124
Query: 139 ---LAELEAAP---NKKPTYMKSNLIS-----SDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
L EL A +KP + + I+ D + I+ + C AGTYVRT C +G
Sbjct: 125 GKKLYELARAGIEVERKPRTVYIHEIALMNFNDDKIFPSAILHIHCSAGTYVRTICHDLG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
LG GA M L R R+G+ + ED +T Q
Sbjct: 185 EKLGCGAYMSFLLRTRAGVFALED-TITLEQ 214
>gi|41408996|ref|NP_961832.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|54036503|sp|Q73VW3.1|TRUB_MYCPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|41397355|gb|AAS05215.1| TruB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 293
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ ++RAT+++ +A
Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLL--------DKHGKPNENTPASY 138
K Y + +L A +VA++ + + Q + D H P+ +
Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
Query: 139 LA-------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
EL A P + + L ++ + + + C +GTYVR
Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVD-VEVDCSSGTYVRALARD 183
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 184 LGAALGVGGHLTALRRTRVG 203
>gi|374625675|ref|ZP_09698091.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
gi|373915335|gb|EHQ47106.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
Length = 280
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KPS +SH+VV ++RIL+ +K GH GTLDP +G L+VC+++AT++++ S
Sbjct: 3 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY++ L ++ + AS K + K+ H N A + + + K P Y
Sbjct: 63 SKEYVATLSLGTSTDTY-DASGKIIETKEF----HALDNNEIVACFNNFIGSQEQKPPIY 117
Query: 153 --MKSN---------------LISSDVT--------LSTGIIWLK--CQAGTYVRTYCVH 185
+K N + + VT + +I K C GTY+R+ C
Sbjct: 118 SAIKVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYD 177
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEED 211
+ LG M +L R +SG S E+
Sbjct: 178 LAKALGYPGHMKDLIRTKSGNFSLEN 203
>gi|365832580|ref|ZP_09374112.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
gi|365260244|gb|EHM90207.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
Length = 280
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KPS +SH+VV ++RIL+ +K GH GTLDP +G L+VC+++AT++++ S
Sbjct: 3 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY++ L ++ + AS K + K+ H N A + + + K P Y
Sbjct: 63 SKEYVATLSLGTSTDTY-DASGKIIETKEF----HALDNNEIVACFNNFIGSQEQKPPIY 117
Query: 153 --MKSN---------------LISSDVT--------LSTGIIWLK--CQAGTYVRTYCVH 185
+K N + + VT + +I K C GTY+R+ C
Sbjct: 118 SAIKVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYD 177
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEED 211
+ LG M +L R +SG S E+
Sbjct: 178 LAKALGYPGHMKDLIRTKSGNFSLEN 203
>gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
gi|255924128|gb|ACU39639.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
Length = 299
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 34/203 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP +SH+VVA ++RIL K GH+GTLDP +G L++ ++RAT+L+
Sbjct: 12 GLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALD 71
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKM---MIKQGLLDKHGKPNENTPASYLA-- 140
K Y+S +L ++ E ++ A + I+ G+ G + P++ A
Sbjct: 72 SKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGA-IQQVPSAVSAVK 130
Query: 141 --------------ELEAAPNKKPTYMKSNLIS----SDVTLSTGIIWLKCQAGTYVRTY 182
E+E P + T + +++S +D T + ++C +GTYVR
Sbjct: 131 VDGKRAYARVRAGEEVE-LPPRPVTVHRFDVLSIRREADATELD--VMVECSSGTYVRAL 187
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G+ LGVG + LRR R G
Sbjct: 188 ARDLGVDLGVGGHLAALRRTRVG 210
>gi|302670333|ref|YP_003830293.1| tRNA pseudouridine synthase B [Butyrivibrio proteoclasticus B316]
gi|302394806|gb|ADL33711.1| tRNA pseudouridine synthase B TruB [Butyrivibrio proteoclasticus
B316]
Length = 319
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 27/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K + +S++VVA ++ IL +K GH+GTLDP +G L+VC+ T+LV+
Sbjct: 6 GLINIYKETGFTSNDVVAKLRGILHQKKIGHTGTLDPDATGVLVVCLGTGTKLVEMLTDH 65
Query: 93 GKEYISIFKL---------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA--- 140
KEYI++ KL V A + + + + G+ ++ P Y A
Sbjct: 66 DKEYIAVCKLGVTTDTQDMSGTVLEEADVHVTRAQLHEAVQAFVGEYDQ-IPPMYSAIKQ 124
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTL-STGIIWLKCQAGTYVRTYCVHM 186
E+E P + + L S++ +T ++ +KC GTY+RT C +
Sbjct: 125 NGKKLYELAREGIEVERKPRRVNISAITILDDSNLDKDNTFVMEVKCSKGTYIRTLCHDI 184
Query: 187 GLVLGVGAQMIELRRNRSG 205
GL LG GA M L R R G
Sbjct: 185 GLRLGCGAAMQNLMRTRVG 203
>gi|212373370|dbj|BAE96943.2| Cbf5 [Sulfolobus metallicus]
Length = 278
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
WIK+ L + GH GTLDPK +G L V +D AT+++ + KEY+ + ++HS E
Sbjct: 3 WIKQRLSLNRVGHGGTLDPKVTGVLPVGLDNATKIMHYVSRSTKEYVCVMQVHSDFE--- 59
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
K +K ++ GK + P + K T ++ +++ ++
Sbjct: 60 -----KESLKSWIMKFKGKIYQRPPVR-----SSVSRKLRTRKIYDIEVTEIEDRLVLMK 109
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
+ + GTY+R C +G++ G GA M ELRR R+GI E + LVT H F V W
Sbjct: 110 VISEHGTYMRKLCHDIGILSGYGAHMRELRRTRTGIFDERN-LVTM---HEFSEAVYMWK 165
Query: 231 LC 232
C
Sbjct: 166 NC 167
>gi|421872747|ref|ZP_16304364.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
gi|372458162|emb|CCF13913.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
Length = 310
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP+ +SH+ VA I+RI + +K GH+GTLDP +G L +CI+ ATR+V+ Q
Sbjct: 7 GVLVLHKPAGMTSHDCVAKIRRIFQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQEL 66
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA- 140
K Y + ++ S E V A I + +++ K E TP Y A
Sbjct: 67 PKAYEVVMRIGSTTTTEDASGEVVETAKVDAATITRERVEEAMKEMLGVIEQTPPMYSAI 126
Query: 141 ---------------ELEAAPNKKPTY-MKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+E + Y ++ + I S+ + C GTY+RT CV
Sbjct: 127 KVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNADYVDVSFYCLCSKGTYMRTLCV 186
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
+G LG A M +L R +SG T + H FE + ++
Sbjct: 187 DLGQKLGYPAHMAKLVRVKSGP-------FTMQHAHTFEELEASM 224
>gi|212373375|dbj|BAE96945.2| Cbf5 [Sulfurisphaera ohwakuensis]
Length = 226
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
WIK++ + K GH GTLDPK +G L + ++ AT+L+ S+GKEY+ + ++H
Sbjct: 3 WIKQMFKVSKAGHGGTLDPKVTGVLPIGLENATKLMSYISSSGKEYVCLMQVHCDFN--- 59
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW 170
+ K +I + + + KP P + ++ KK Y ++ +D ++
Sbjct: 60 -IDELKQLISKFIGIIYQKP----PVR--SSVKRRTRKKKIY-DIEILDTDKRFI--LLR 109
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ GTY+R C +G++LG GA M ELRR RSGI +E++ LVT ++
Sbjct: 110 ISSDPGTYMRKLCHDIGVILGCGAHMRELRRIRSGIFTEKN-LVTLQE 156
>gi|339009428|ref|ZP_08642000.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
gi|338773906|gb|EGP33437.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
Length = 310
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 37/226 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP+ +SH+ VA I+RI + +K GH+GTLDP +G L +CI+ ATR+V+ Q
Sbjct: 7 GVLVLHKPAGMTSHDCVAKIRRIYQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQEL 66
Query: 93 GKEYISIFKLHS----------AVEN--VAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + ++ S VE V AS + +++ + + G E TP Y A
Sbjct: 67 PKAYEVVMRIGSTTTTEDASGEVVETAKVDAASITRERVEEAMKEMLGVI-EQTPPMYSA 125
Query: 141 ----------------ELEAAPNKKPTY-MKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+E + Y ++ + I S+ + C GTY+RT C
Sbjct: 126 IKVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNAEYVDVSFYCLCSKGTYMRTLC 185
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTW 229
V +G LG A M +L R +SG T + H FE + ++
Sbjct: 186 VDLGQKLGYPAHMAKLVRVKSGP-------FTMQHAHTFEELEASM 224
>gi|212373362|dbj|BAE96939.2| Cbf5 [Metallosphaera hakonensis]
Length = 226
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K + + GH GTLDPK +G L + + +ATR++ +GKEYI + ++H
Sbjct: 3 WVKTMFGLPRVGHGGTLDPKVTGVLPIGLGKATRVMNLITKSGKEYICLMEVHCEFSE-- 60
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG--- 167
K + + KQ + + KP + K K + S D+ +G
Sbjct: 61 --DKLREVSKQFVGTIYQKPPVRSSV------------KRRVRKREIYSLDLLEISGRRV 106
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + + GTY+R C MG++LG GA M ELRR +SGI +ED LVT +Q
Sbjct: 107 LMRISSEPGTYMRKICHDMGILLGCGAHMRELRRTKSGI-FKEDTLVTLQQ 156
>gi|417749489|ref|ZP_12397886.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459008|gb|EGO37960.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 293
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ ++RAT+++ +A
Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLL--------DKHGKPNENTPASY 138
K Y + +L A +VA++ + + Q + D H P+ +
Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
Query: 139 LA-------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
EL A P + + L ++ + + + C +GTYVR
Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVD-VEVDCSSGTYVRALARD 183
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 184 LGAALGVGGHLTPLRRTRVG 203
>gi|310641599|ref|YP_003946357.1| tRNA pseudouridine synthase b [Paenibacillus polymyxa SC2]
gi|386040625|ref|YP_005959579.1| tRNA pseudouridine synthase B [Paenibacillus polymyxa M1]
gi|309246549|gb|ADO56116.1| tRNA pseudouridine synthase B [Paenibacillus polymyxa SC2]
gi|343096663|emb|CCC84872.1| tRNA pseudouridine synthase B [Paenibacillus polymyxa M1]
Length = 312
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA +R+L ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 13 GVLPVYKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRVVEYMQER 72
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKM----MIKQGLLDKHGKPNENTPASYLA-- 140
KEY + +L A + + + S++ + M + +L++ P Y A
Sbjct: 73 PKEYRATLRLGIATDTEDLTGTITEESERPVEVTEMEAKAVLERFVGTISQVPPMYSALK 132
Query: 141 -----ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----------CQAGTYVRTYCVH 185
E A K KS +S TG + C GTY+RT CV
Sbjct: 133 VDGKRLYELAREGKTVERKSREVSIYELEMTGFAKMGAHVDISFRALCSKGTYIRTLCVD 192
Query: 186 MGLVLGVGAQMIELRRNRS-GIQSE 209
+G LG + M++L R S GI +E
Sbjct: 193 IGRELGYPSTMVKLERTMSAGISAE 217
>gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|262184334|ref|ZP_06043755.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|254764883|sp|C3PH13.1|TRUB_CORA7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|227454364|gb|ACP33117.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
Length = 297
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 40/208 (19%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R+G V +DKP+ +SH+VV ++R R K GH+GTLDP +G L+V I+R T+ +
Sbjct: 7 RSGLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMV 66
Query: 91 SAGKEYISIFKL------------------HSAVENVAKASKKKMMIKQ--------GLL 124
++ K Y + +L +AVE+ A A + + +
Sbjct: 67 ASTKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAI 126
Query: 125 DKHGK-PNENTPASYLAELEAAP------NKKPTYMKSNLISSDVTLSTGIIWLKCQAGT 177
GK +E A EL A P + T + I DV+++ C +GT
Sbjct: 127 KVDGKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVSVA-------CSSGT 179
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSG 205
Y+R+ +G LGVG + LRR G
Sbjct: 180 YIRSLARDLGEALGVGGHLTALRRTEVG 207
>gi|374608294|ref|ZP_09681093.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
gi|373553826|gb|EHP80413.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
Length = 305
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 40/216 (18%)
Query: 23 QRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
+R+ ++ + AG V +DKPS +SH+VV ++I K GH+GTLDP +G L+V I+RA
Sbjct: 7 ERSDRKIVAAGLVVVDKPSGMTSHDVVGRCRQIFGTRKVGHAGTLDPMATGVLVVGIERA 66
Query: 83 TRLVKSQQSAGKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNE 132
T+++ + K Y + +L ++ V+ A + I++ + G+ ++
Sbjct: 67 TKILGMLTATDKSYAATIRLGQTTSTEDAEGEVLQTVSAAGVDEAQIEESVAALRGEIDQ 126
Query: 133 ----------NTPASYLAELEA-----APNKK--------PTYMKSNLISSDVTLSTGII 169
N +Y E AP + + N + DV
Sbjct: 127 VPSAVSAIKVNGQRAYKLAREGHAVALAPRRVRIDKFDVLSVRRQGNFVDVDV------- 179
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ C +GTY+R +G LGVG + LRR R G
Sbjct: 180 EVHCSSGTYIRALARDVGAALGVGGHLTALRRTRVG 215
>gi|429735736|ref|ZP_19269667.1| tRNA pseudouridine synthase B [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429157084|gb|EKX99691.1| tRNA pseudouridine synthase B [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 291
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+V+ ++RI + ++ GH+GTLDP +G L V + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVIDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-- 140
K Y + A +E+V + + +L + + P +Y A
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGEVIESVPHPTLPTEEEMRAVLARFVGEIQQRPPAYSAIK 122
Query: 141 ----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
E+EA + T + L+ D +I + C GTY+R+ C
Sbjct: 123 IGGQRAYDLARQGAEVEIEA---RTVTIHRLELVHVDAVRRRILIDVDCAKGTYIRSLCT 179
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LG+ A M L R R G
Sbjct: 180 DIGTALGLPATMHFLLRTRVG 200
>gi|401564638|ref|ZP_10805516.1| tRNA pseudouridine(55) synthase [Selenomonas sp. FOBRC6]
gi|400188635|gb|EJO22786.1| tRNA pseudouridine(55) synthase [Selenomonas sp. FOBRC6]
Length = 291
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+V+ ++RI + ++ GH+GTLDP +G L V + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVIDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-- 140
K Y + A +E+V + + +L + + P +Y A
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGEVIESVPHPTLPTEEEMRAVLARFVGEIQQRPPAYSAIK 122
Query: 141 ----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
E+EA + T + L+ D +I + C GTY+R+ C
Sbjct: 123 IGGQRAYDLARQGAEVEIEA---RTVTIHRLELVHVDAVRRRILIDVDCAKGTYIRSLCT 179
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LG+ A M L R R G
Sbjct: 180 DIGTALGLPATMHFLLRTRVG 200
>gi|212373381|dbj|BAE96948.2| Cbf5 [Thermocladium modestius]
Length = 227
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
V+WIK+++ E+ GH+GTLDP+ SG L V + +T++++ KEYI++ LH
Sbjct: 1 VSWIKKMMGLERAGHAGTLDPRVSGVLPVALGDSTKVLQGISHEDKEYIAVMTLH----- 55
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
AS ++ I++ L + G+ + P A + T +L + +
Sbjct: 56 -GDASDER--IREVLAEFTGEIYQRPPVK-----SAVKRQLRTRRVYSLKMLERDGRYVL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+ + +AGTY+R C +G VLGVGA M ELRR R G E++ +
Sbjct: 108 LDARVEAGTYIRKLCYDVGEVLGVGANMRELRRVRVGCFGEDEAV 152
>gi|334134194|ref|ZP_08507706.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
gi|333608276|gb|EGL19578.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
Length = 311
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 34/203 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP +SH+VVA +R L ++ GH+GTLDP+ +G L +CI RATR+V+ Q
Sbjct: 5 GILPILKPKGMTSHDVVAKARRFLGIKRIGHTGTLDPEVTGVLPLCIGRATRMVEYIQEL 64
Query: 93 GKEYIS--IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP---- 146
K+Y + +F L + E+++ +++ + Q DK + S++ E+ P
Sbjct: 65 PKQYEAAVVFGLATDTEDLSGNVLEEIPLVQLAEDK----VRSVIQSFVGEISQVPPMYS 120
Query: 147 ----------------------NKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTYVRTY 182
+ T + L+ D+ + + C GTY+RT
Sbjct: 121 AVKVDGKRLYELARAGVEVERKARNVTIYEIELLELDLNRDHPEVRFRVLCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
CV +G LGV A M EL R+ +G
Sbjct: 181 CVDIGRALGVPAAMKELVRSSTG 203
>gi|256252656|dbj|BAH97725.1| Cbf5 [Vulcanisaeta souniana JCM 11219]
Length = 227
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 33/195 (16%)
Query: 50 AWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109
AWIK++L ++ GHSGTLDP+ SG L + + +T+ + + + KEYI + KLH V++
Sbjct: 2 AWIKKMLNLDRAGHSGTLDPRVSGVLPIALGESTKAMPAINNLDKEYIMVMKLHGDVDD- 60
Query: 110 AKASKKKMMIKQGLLDKHGKP------NENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163
K + ++++ + +P ++ ELE L+ D
Sbjct: 61 ---GKLRAVLREFTGAIYQRPPLRSAVKRQLRVKHVYELE-------------LLERDGK 104
Query: 164 LSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLV--------T 215
+ +I + ++GTY R +G VLGVGA M ELRR R G +E++ + T
Sbjct: 105 YA--LIRMNVESGTYARKLAYDIGEVLGVGANMRELRRIRVGCFTEKEAITLQDLKDAYT 162
Query: 216 FRQEHMFEHIVSTWV 230
+++ E ++ T+V
Sbjct: 163 LYRDYGIEDLLRTYV 177
>gi|119874611|gb|ABM05782.1| dyskerin [Lithobius forficatus]
Length = 215
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 154 KSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+S L+ D + + GI W+ C+AGTYVRT CVH+GL+LGVG QM ELRR RSG+QSE++ L
Sbjct: 47 QSKLLEYDKSRNMGIFWVDCEAGTYVRTLCVHIGLMLGVGGQMQELRRVRSGVQSEKEEL 106
Query: 214 VTFRQEHMFEHIVSTWV 230
T M + + + WV
Sbjct: 107 AT-----MHDLLDAQWV 118
>gi|300087635|ref|YP_003758157.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527368|gb|ADJ25836.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 304
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 24/198 (12%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRIL-RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
R G++N+DKP+ +S +VVA ++R++ RC + GH+GTLDP +G L V + ATR ++
Sbjct: 7 RGGWLNIDKPAGMTSFQVVARLRRVIGRC-RIGHAGTLDPLATGVLPVAVGAATRTIEFH 65
Query: 90 QSAGKEYIS--IFKLHS--------AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
K Y + +F + + V +S K I Q L D G+ + P
Sbjct: 66 HRHPKTYRAEILFGIATDTYDAEGKIVSQADASSLKPAEIIQALADFRGEIQQVPPIYSA 125
Query: 140 AELEAAP---------NKKPTYMKSNLI---SSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+ + P + P + N+ + +V L T ++ ++C GTY+R+ +G
Sbjct: 126 LKQQGRPMYAIVRSGGSVSPEPRRVNIFRLEAVEVELPTVVLEVECSGGTYIRSLAHDLG 185
Query: 188 LVLGVGAQMIELRRNRSG 205
LGVGA + LRR G
Sbjct: 186 QALGVGAHLRALRRTAYG 203
>gi|213964398|ref|ZP_03392598.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
gi|213952591|gb|EEB63973.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
Length = 328
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 32/214 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP +SH+VV ++RI R +K GHSGTLDP +G L++ I R TR + +
Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69
Query: 92 AGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
K Y + +L +A + + AS MI++ + D G + A +
Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129
Query: 142 LEAA--------------PNKKPTYMKSNLI----SSDVTLSTGII----WLKCQAGTYV 179
++ P + T + ++ SD + I + C AGT++
Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R +G LGVG + LRR +G+ + ++ L
Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEAL 223
>gi|402837027|ref|ZP_10885558.1| tRNA pseudouridine(55) synthase [Mogibacterium sp. CM50]
gi|402270043|gb|EJU19312.1| tRNA pseudouridine(55) synthase [Mogibacterium sp. CM50]
Length = 314
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G +N++KP +SH+VVA ++R L ++ GH+GTLDP +G L VC ++TR+++
Sbjct: 4 SGVININKPEGYTSHDVVARLRRRLGIKRVGHTGTLDPMATGVLPVCYGKSTRIIEYYDH 63
Query: 92 AGKEYISIFKLHS--------------------------AVENVAKASKKKMMIKQGLLD 125
K Y + +L A+E + + + ++ + L
Sbjct: 64 DWKTYEAELELGKVSDTLDSTGEVVEERSAAGVTREDVLALEPMYRGTITQIPPRYSALK 123
Query: 126 KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-DVTLSTGIIWLKCQAGTYVRTYCV 184
+G+P A E++ K+ ++S +S D+ + C GTY+R+ C
Sbjct: 124 INGRPLYKY-AREGQEIDIDSKKREIEIRSFAFTSIDIPTRKVSFTVTCSKGTYIRSICA 182
Query: 185 HMGLVLGVGAQMIELRRNRSGI 206
+G +LG GA M +L R RSG+
Sbjct: 183 EIGELLGTGAVMTKLERTRSGV 204
>gi|310778247|ref|YP_003966580.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
gi|309747570|gb|ADO82232.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
Length = 286
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+DK S +S +VV +KRIL+ +K GH+GTLDP +G L++C RATRL + +
Sbjct: 3 GIINIDKSSGMTSFDVVRRLKRILKMKKIGHTGTLDPMATGILVICTGRATRLAQDIEGQ 62
Query: 93 GKEYISIFKL---------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL- 142
K YI+ F+L + + K+ +++ L + G+ ++ P ++
Sbjct: 63 RKTYIAGFELGYKTTTYDTEGEITHRTDKGAKREELEKALENFRGEIDQIPPMYSALKVN 122
Query: 143 -----EAAPNKKPTYMKS------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
E A K KS NL D G GTY+R+ +G +LG
Sbjct: 123 GKRLYELAREGKEVERKSRRVTIENLEILDFDGRKGTFTCTVSKGTYIRSLIYDIGELLG 182
Query: 192 VGAQMIELRRNRSG 205
M LRR + G
Sbjct: 183 TYGVMTSLRRTQVG 196
>gi|383786894|ref|YP_005471463.1| tRNA pseudouridine synthase B [Fervidobacterium pennivorans DSM
9078]
gi|383109741|gb|AFG35344.1| tRNA pseudouridine synthase B [Fervidobacterium pennivorans DSM
9078]
Length = 320
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G + +DK P+SH++V I+++L+ ++ GH+GTLDP +G L+V + +ATRL++ Q
Sbjct: 5 SGILLVDKEKGPTSHDIVERIRKLLQVKQVGHAGTLDPFATGLLVVGVGKATRLLEYLQH 64
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNE----NTPASYLAELEAAPN 147
A K Y F+L + + I + D K +E NT S++ + P
Sbjct: 65 ADKVYKVKFRLGVITDTFDITGQ----IMEDHSDDVSKLSEEEVLNTIKSFIGTYKQVP- 119
Query: 148 KKPTYMKS-----------------NLISSDVTLSTGIIW------------LKCQAGTY 178
P Y NL +VT+ IW K +GTY
Sbjct: 120 --PAYSAKKYQGKKLYELAREGKIINLPPREVTIYD--IWDIKINLPEVEFVTKVSSGTY 175
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
+R+ C+ +G LG GA IELRR G
Sbjct: 176 IRSLCMDIGYKLGCGATAIELRRLSVG 202
>gi|256252616|dbj|BAH97730.1| Cbf5 protein [Aeropyrum pernix]
gi|256252618|dbj|BAH97731.1| Cbf5 protein [Aeropyrum pernix]
gi|256252620|dbj|BAH97732.1| Cbf5 protein [Aeropyrum pernix]
gi|256252622|dbj|BAH97733.1| Cbf5 protein [Aeropyrum pernix]
gi|256252624|dbj|BAH97734.1| Cbf5 protein [Aeropyrum pernix]
gi|256252626|dbj|BAH97735.1| Cbf5 protein [Aeropyrum pernix]
gi|256252628|dbj|BAH97736.1| Cbf5 protein [Aeropyrum pernix]
gi|256252662|dbj|BAH97728.1| Cbf5 protein [Aeropyrum pernix]
gi|256252664|dbj|BAH97729.1| Cbf5 protein [Aeropyrum pernix]
Length = 70
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 29 YIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKS 88
Y+R G + +DKP P+SHEVVAWIKR+L + GH GTLDPK +G L V ++R TR++ +
Sbjct: 2 YLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGT 61
Query: 89 QQSAGKEYI 97
+ KEY+
Sbjct: 62 VMHSSKEYV 70
>gi|51892663|ref|YP_075354.1| tRNA pseudouridine 55 synthase [Symbiobacterium thermophilum IAM
14863]
gi|62901281|sp|Q67P83.1|TRUB_SYMTH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|51856352|dbj|BAD40510.1| tRNA pseudouridine 55 synthase [Symbiobacterium thermophilum IAM
14863]
Length = 299
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 87/199 (43%), Gaps = 27/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL KP +SH+VVA+++R L +K GH+GTLDP +G L VC+ RATRL + +
Sbjct: 14 GVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCVGRATRLAEYIAGS 73
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMM---IKQGLLDKHGKPNENTPASYLA-- 140
K Y + A E VA+A + + L HG P E P A
Sbjct: 74 DKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHG-PIEQVPPMVSAVK 132
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
E+E P + + L I + C GTYVRT +
Sbjct: 133 VGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCSKGTYVRTLAHDL 192
Query: 187 GLVLGVGAQMIELRRNRSG 205
G L VGA + L R RSG
Sbjct: 193 GRFLQVGAHLSYLVRTRSG 211
>gi|253701576|ref|YP_003022765.1| tRNA pseudouridine synthase B [Geobacter sp. M21]
gi|251776426|gb|ACT19007.1| tRNA pseudouridine synthase B [Geobacter sp. M21]
Length = 295
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+ +DKP+ +SH++V+ ++R + +K GH+GTLDP +G L V + T+ ++ +
Sbjct: 4 GFFVIDKPAGVTSHDIVSKVRRAINQKKVGHTGTLDPFATGVLPVAVGEGTKAIQFLDES 63
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
KEY ++ +L A + + + Q L ++ E T L K+
Sbjct: 64 EKEYRAVMRLGIATDT-------QDLTGQVLAERDWSHLEATDLERLVPRFLGLQKQMPP 116
Query: 153 MKSNLISSDVTL--------------------STGIIWLK---------CQAGTYVRTYC 183
M S + V L S W++ C GTYVRT
Sbjct: 117 MFSAIKQGGVPLYKLARKGIEVEREAREVEIHSLHFDWIRLPEACFTVTCSRGTYVRTLA 176
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG GA ++ELRR RSG+ E+D +
Sbjct: 177 CDIGEALGCGAHLLELRRTRSGLFLEKDAI 206
>gi|78045042|ref|YP_360583.1| tRNA pseudouridine synthase B [Carboxydothermus hydrogenoformans
Z-2901]
gi|91208071|sp|Q3ABA1.1|TRUB_CARHZ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|77997157|gb|ABB16056.1| tRNA pseudouridine synthase B [Carboxydothermus hydrogenoformans
Z-2901]
Length = 288
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 27/200 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS- 91
G++NL KP +SH+VVA++++ L+ K GH GTLDP +G L V + +ATRL++ ++
Sbjct: 3 GFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLENV 62
Query: 92 AGKEYIS--IFKLHSA---VENVAKASKKKMMIKQGLLDK-----HGKPNENTPASYLAE 141
A KEY++ +F + +A +E K + G ++K HG+ + P + +
Sbjct: 63 AMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASAVK 122
Query: 142 L-------------EAAPNKKPTYMKS-NLIS--SDVTLSTGIIWLKCQAGTYVRTYCVH 185
+ + P K+ ++ S L+ +D ++++C GTY+R+
Sbjct: 123 VSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIANE 182
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G +L GA + L R RSG
Sbjct: 183 IGNLLKTGATLKFLLRTRSG 202
>gi|169350218|ref|ZP_02867156.1| hypothetical protein CLOSPI_00962 [Clostridium spiroforme DSM 1552]
gi|169293001|gb|EDS75134.1| tRNA pseudouridine synthase B [Clostridium spiroforme DSM 1552]
Length = 286
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KPS +SH+VV +++IL+ +K GH GTLDP +G L+VC+++AT++++ S
Sbjct: 9 GIILINKPSGMTSHDVVNKLRKILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSD 68
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH----------GKPNENTPASYLAEL 142
KEYI+ L ++ + + K + LDK GK + P ++
Sbjct: 69 SKEYIATLSLGTSTDTYDASGKVLEKKEYSGLDKQVIIDCFNNFVGKQIQKPPIYSAIKV 128
Query: 143 ------EAAPNKKPTYMKSNLISSD----VTLSTGIIWLK--CQAGTYVRTYCVHMGLVL 190
E A N + + + + + + + +I K C GTY+R+ C + L
Sbjct: 129 NGKKLYEYARNGEEVEIPTREVEINYLEIMDIKDNLIKFKVGCSKGTYIRSLCFDLAKAL 188
Query: 191 GVGAQMIELRRNRSG 205
G M +L R +SG
Sbjct: 189 GYPGHMQDLIRTKSG 203
>gi|222055784|ref|YP_002538146.1| tRNA pseudouridine synthase B [Geobacter daltonii FRC-32]
gi|221565073|gb|ACM21045.1| tRNA pseudouridine synthase B [Geobacter daltonii FRC-32]
Length = 319
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP +SH+VV ++R+ +K GH+GTLDP +G L V + T+ +
Sbjct: 4 GFIVVDKPIGVTSHDVVGMVRRMAGQKKVGHTGTLDPFATGVLPVALGEGTKAITFLDEG 63
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGL----LDKHGKPNENTPASYLAEL 142
KEY ++ L +A + NV +S + +Q + L GK ++ P +
Sbjct: 64 VKEYQAVMMLGTATDTQDCTGNVTSSSDCSAITEQAVAEVCLSMVGKQSQLPPMFSALKK 123
Query: 143 EAAPNKKPTYMKS------------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P K + +L+ + L ++C GTYVRT +GL L
Sbjct: 124 NGVPLYKLARQGTEVEREARGIEIFSLVIDRMNLPQVSFTVRCSRGTYVRTLAHDIGLKL 183
Query: 191 GVGAQMIELRRNRSGIQSEEDGL 213
G GA +++LRR SG + +D +
Sbjct: 184 GCGAHLVQLRRTTSGPFTIQDAV 206
>gi|256252658|dbj|BAH97726.1| Cbf5 protein [Aeropyrum pernix]
gi|256252660|dbj|BAH97727.1| Cbf5 protein [Aeropyrum pernix]
Length = 70
Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 29 YIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKS 88
Y+R G + +DKP P+SHEVVAWIKR+L + GH GTLDPK +G L V ++R TR++ +
Sbjct: 2 YLRYGMIIVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGT 61
Query: 89 QQSAGKEYI 97
+ KEY+
Sbjct: 62 VMHSSKEYV 70
>gi|431794484|ref|YP_007221389.1| tRNA pseudouridine synthase B [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430784710|gb|AGA69993.1| tRNA pseudouridine synthase B [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 294
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G N+ KP +S +VV ++RIL K GH+GTLDP G L +C+ +ATRL + +
Sbjct: 3 GVSNVLKPVGMTSSDVVVRLRRILSTRKIGHTGTLDPDVMGVLPICVGKATRLAEYLTNQ 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIK---------QGLLDKHGKPNENTPASYLAE-- 141
GK Y + AS +K+ IK Q ++ P + P Y A
Sbjct: 63 GKTYHCEITF-GITTDTQDASGQKITIKPAKVSEEDFQRIISDFSGPIQQIPPMYSAVKY 121
Query: 142 -----LEAAPNKKPTYMKSNLISSDVT---------LSTGIIWLKCQAGTYVRTYCVHMG 187
E A KS I D + + C GTY+RT C +G
Sbjct: 122 QGKRLYELARQGVEVERKSREIHIDRIELEEWTAGEFPKAVFEVDCSKGTYIRTLCHDIG 181
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
+ LG GA M L R RSG ED +
Sbjct: 182 IALGCGAHMSGLVRLRSGPFRIEDSI 207
>gi|167630362|ref|YP_001680861.1| tRNA pseudouridine synthase b [Heliobacterium modesticaldum Ice1]
gi|259550521|sp|B0THR7.1|TRUB_HELMI RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|167593102|gb|ABZ84850.1| tRNA pseudouridine synthase b [Heliobacterium modesticaldum Ice1]
Length = 306
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 31/209 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++NL KP +SH+VVA +R+L+ ++ GH GTLDP +G L + I +ATRL++
Sbjct: 8 GFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLIELVAGV 67
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN-ENTPASYLAELEAAP----- 146
K Y + +L AV + AS + ++K G + + + E T + ++ P
Sbjct: 68 DKAYRTQLRL-GAVTDSQDASGR--IVKTGAVPALSRDDWEETLRPFRGQILQTPPMVSA 124
Query: 147 --------------------NKKPTYM-KSNLISSD-VTLSTGIIWLKCQAGTYVRTYCV 184
+ +P + + ++ D T +I ++C AGTY+RT C
Sbjct: 125 VSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRTLCH 184
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG G M L R RSG+ S D L
Sbjct: 185 DIGQRLGCGGHMGWLIRTRSGLFSLRDSL 213
>gi|118464111|ref|YP_882859.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
gi|189036542|sp|A0QIX1.1|TRUB_MYCA1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118165398|gb|ABK66295.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
Length = 309
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ ++RAT+++ +A
Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLL--------DKHGKPNENTPASY 138
K Y + +L A +V ++ + + Q + D H P+ +
Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
Query: 139 LA-------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
EL A P + + +L ++ + + + C +GTYVR
Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVD-VEVDCSSGTYVRALARD 183
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 184 LGAALGVGGHLTALRRTRVG 203
>gi|441182565|ref|ZP_20970326.1| tRNA pseudouridine synthase B [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440614176|gb|ELQ77480.1| tRNA pseudouridine synthase B [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 324
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 45/211 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VVA ++ + R + GH+GTLDP +G L++ I+RAT+L+
Sbjct: 23 GLVIVDKPAGFTSHDVVAKMRGMARTRRVGHAGTLDPMATGVLVLGIERATKLLGHLALT 82
Query: 93 GKEYISIFKL-HSAVENVAK----ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
KEY+ +L ++V + A+ ASK + + +D A+ E+ P+
Sbjct: 83 EKEYVGTIRLGQTSVTDDAEGEITASKAAHGLDRAAIDAG-------VATLTGEIMQVPS 135
Query: 148 K--------KPTYMK------SNLISSDVTLSTGIIW-------------------LKCQ 174
K K +Y + + + VT+S+ +++ ++C
Sbjct: 136 KVSAIKIDGKRSYARVRKGEDVEIPARPVTVSSFVVYSAEETEAEDGTPVTDLLVSVECS 195
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+GTY+R +G LGVG + LRR R G
Sbjct: 196 SGTYIRALARDLGDALGVGGHLTALRRTRVG 226
>gi|315648091|ref|ZP_07901192.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
gi|315276737|gb|EFU40080.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
Length = 303
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++ ILR ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGILRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE- 141
KEY ++ +L S E + K + L G P P Y A
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGSVTETADEVHVTKNEAIEALQSFMG-PISQVPPMYSAVK 124
Query: 142 ------LEAAPNKKPTYMKSNLIS-SDVTLS--------TGIIW-LKCQAGTYVRTYCVH 185
E A K KS ++ ++ ++ T I + + C GTY+RT CV
Sbjct: 125 INGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTDISFRVLCSKGTYIRTLCVD 184
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
+G LG+ + M++L R S +E+ L T Q F
Sbjct: 185 IGRKLGLPSVMVKLERTVSAGITEQQCL-TLEQIEQF 220
>gi|256252630|dbj|BAH97712.1| Cbf5 [Desulfurococcus amylolyticus Z-533]
Length = 228
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAW+K++ EK GH GTLDPK +G L + + +T+++ + + KEY+ + +LH
Sbjct: 1 VAWVKKMFNLEKAGHGGTLDPKVTGVLPIGLANSTKVIGNVIHSVKEYVMVIQLHGD--- 57
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
A+ S KM+++ D + KP + + + ++ I +
Sbjct: 58 -ARESSVKMVVEYFKGDIYQKPPLRSSVKRSIRVRRIYEIELLEIRDRFI---------L 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ + GTY+R +GL+LG GA M ELRR R+G E++ LV +
Sbjct: 108 VRVLSDPGTYMRKLAHDIGLMLGTGAHMRELRRTRTGPYREDETLVRLQD 157
>gi|308068703|ref|YP_003870308.1| tRNA pseudouridine synthase B [Paenibacillus polymyxa E681]
gi|305857982|gb|ADM69770.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
[Paenibacillus polymyxa E681]
Length = 311
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 47/242 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA +R+L ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 13 GVLPVYKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRVVEYMQER 72
Query: 93 GKEYISIFKLHSAVEN------VAKASKKKMMIKQ----GLLDKHGKPNENTPASYLA-- 140
KEY + +L A + + + S++ + + + +L + P Y A
Sbjct: 73 PKEYRATLRLGIATDTEDLTGKITEESERPVEVTEVEAKAVLKRFVGTISQVPPMYSALK 132
Query: 141 -----ELEAAPNKKPTYMKSNLISSDVTLSTGI--------IWLK--CQAGTYVRTYCVH 185
E A K KS +S TG I + C GTY+RT CV
Sbjct: 133 VDGKRLYELAREGKTVERKSREVSIYELEMTGFAETGAYVDISFRALCSKGTYIRTLCVD 192
Query: 186 MGLVLGVGAQMIELRRNRS-GIQSEE------------DG-----LVTFRQ--EHMFEHI 225
+G LG + M++L R S GI +E DG L+T Q ++M EHI
Sbjct: 193 IGRELGYPSTMVKLERTMSAGIPAERCLTFEEIERFVADGSLGERLITTDQAIDYMPEHI 252
Query: 226 VS 227
V+
Sbjct: 253 VA 254
>gi|158523041|ref|YP_001530911.1| tRNA pseudouridine synthase B [Desulfococcus oleovorans Hxd3]
gi|158511867|gb|ABW68834.1| tRNA pseudouridine synthase B [Desulfococcus oleovorans Hxd3]
Length = 303
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 26/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + ++KP+ +S +VVA +KR K GH+GTLDP +G L+ I+RATRL + ++
Sbjct: 7 GIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLAS 66
Query: 93 GKEYISIFKLH------------SAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y ++ L +AV + + + I++ + G+ + PA
Sbjct: 67 DKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSAV 126
Query: 141 ELEAAP----NKKPTYMKS---NLISSDVTLSTGIIW------LKCQAGTYVRTYCVHMG 187
+ + P ++ Y++ ++ S +T+ I W + C +GTY+RT C MG
Sbjct: 127 KHQGVPLYRLARQGVYVEKPARPVVISSLTVQE-ICWPMVRFEVTCSSGTYIRTLCADMG 185
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G + L R R+G
Sbjct: 186 RALGCGGHLYALERTRAG 203
>gi|260438335|ref|ZP_05792151.1| tRNA pseudouridine synthase B [Butyrivibrio crossotus DSM 2876]
gi|292808922|gb|EFF68127.1| tRNA pseudouridine synthase B [Butyrivibrio crossotus DSM 2876]
Length = 293
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 29/206 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K S +SH+VVA ++ IL +K GH+GTLDP+ +G L VC+ ATRL
Sbjct: 4 GIINVYKESGFTSHDVVAKLRGILHQKKIGHTGTLDPEATGVLPVCLGNATRLCDMITDK 63
Query: 93 GKEYISIFKLHSAVENVAKA----SKKKMMIKQGLLDK-----HGKPNENTPASYLA--- 140
KEY ++ L + + S+K + + ++K GK N+ P Y A
Sbjct: 64 SKEYRAVLLLGISTDTEDATGKILSRKAVNVTAKDIEKTINSFAGKYNQ-VPPMYSALKV 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E+E P + Y ++I + + + +KC GTY+R+ C +G
Sbjct: 123 NGQKLCDLARKGVEIERKPREVFIY---DIIIEKIDIPEVTMTVKCSKGTYIRSLCRDIG 179
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
L G M L R R+GI + E+ +
Sbjct: 180 EKLNTGGTMKSLVRTRTGIFNIENAV 205
>gi|424864023|ref|ZP_18287931.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
gi|400759954|gb|EJP74131.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
Length = 242
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 26 IQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRL 85
+Q+ G + +DKPS +SH++V ++R L+ +K GH+GTLDP +G +I+ I +AT++
Sbjct: 3 LQDPTFEGILLVDKPSGITSHDIVDRLRRKLKMKKIGHAGTLDPLATGLMIMLIGKATKV 62
Query: 86 VKSQQSAGKEYISIFKLHSAVENVAKASKKKMM-----------------IKQGLLDKHG 128
+ S K Y F+L VE ++ S +++ +KQ L D++
Sbjct: 63 SQFLISLDKAYEGTFEL--GVETDSQDSDGEIVERRDLPEDLSEDMIRNEMKQFLGDQYQ 120
Query: 129 KPN-------ENTPASYLAELEAAPNKKPTYMKSN-LISSDVTLSTGIIWLKCQAGTYVR 180
P + P +A ++P ++ N L ++ + G ++ C GTYVR
Sbjct: 121 TPPMFSAKKIDGVPLYKMARKGKTVEREPRVIRINELTLTNWSSPQGEFFMDCSKGTYVR 180
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ-EHM 221
T +G LG G + LRR + S E G+ T + EHM
Sbjct: 181 TVFHDLGQNLGCGGHLTSLRRTKINDFSIE-GVSTLEEIEHM 221
>gi|294786399|ref|ZP_06751653.1| tRNA pseudouridine synthase B [Parascardovia denticolens F0305]
gi|315225961|ref|ZP_07867749.1| tRNA pseudouridine synthase B [Parascardovia denticolens DSM 10105
= JCM 12538]
gi|294485232|gb|EFG32866.1| tRNA pseudouridine synthase B [Parascardovia denticolens F0305]
gi|315120093|gb|EFT83225.1| tRNA pseudouridine synthase B [Parascardovia denticolens DSM 10105
= JCM 12538]
Length = 326
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G + +DKP +SH+VVA +R+L K GH+GTLDP +G L++ +ATRL+ +
Sbjct: 9 SGVMVVDKPQGVTSHDVVAAARRLLHTRKVGHAGTLDPMATGVLVLGFGKATRLLNAITD 68
Query: 92 AGKEYISIFKLHSAVEN----------VAKASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
A K Y ++ +L A ++ + MI + G+ + P++Y A
Sbjct: 69 ADKTYETVIRLGQATTTDDAEGELTGFFDLSAISRQMIWEAAKKLTGR-IQQVPSAYSAI 127
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK------CQAGTYVR 180
E P + T + ++S D + L C +GTY+R
Sbjct: 128 KVNGRRSYDLARQGEEVHLPARPVTIEEFTILSVDEAQAGATPVLDVHARVTCSSGTYIR 187
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
+ +G +LGVGA +I LRR R G + EH F
Sbjct: 188 SLGRDLGSLLGVGAHLIMLRRLRVGKFGLTSAAIATVGEHRF 229
>gi|422575348|ref|ZP_16650889.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
gi|314923884|gb|EFS87715.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
Length = 295
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 30/204 (14%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 4 LQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP--- 146
K+Y + +L V V ++ + + + A E++ P
Sbjct: 64 SLHDKDYTATMRL--GVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAV 121
Query: 147 -----NKKPTYMKSN------LISSDVTLS--------------TGIIWLKCQAGTYVRT 181
N + Y K L VT+S + + C +GTYVR
Sbjct: 122 SAIKVNGRRAYAKVRAGEDVVLRPRTVTVSRFEAIAIRRHGQVIDADVEVTCSSGTYVRA 181
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 182 LARDIGADLGVGGHLTALRRTRVG 205
>gi|451346961|ref|YP_007445592.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens IT-45]
gi|449850719|gb|AGF27711.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens IT-45]
Length = 309
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +++ L LDK P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVREPLEEADIKAVLDKLKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|308173629|ref|YP_003920334.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens DSM 7]
gi|384159351|ref|YP_005541424.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens TA208]
gi|384164215|ref|YP_005545594.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens LL3]
gi|384168397|ref|YP_005549775.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens XH7]
gi|307606493|emb|CBI42864.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens DSM 7]
gi|328553439|gb|AEB23931.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens TA208]
gi|328911770|gb|AEB63366.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens LL3]
gi|341827676|gb|AEK88927.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens XH7]
Length = 309
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQ--------GLLDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ +LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPINETDIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D++L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDISLTSPVTYTDDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|312111632|ref|YP_003989948.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|336236007|ref|YP_004588623.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720551|ref|ZP_17694733.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216733|gb|ADP75337.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|335362862|gb|AEH48542.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365904|gb|EID43195.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
Length = 302
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 32/216 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ VA I+R+LR +K GH+GTLDP SG L +CI +ATR+ + +
Sbjct: 3 GVLLLHKPPGMTSHDCVARIRRMLRTKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGS 62
Query: 93 GKEY-------ISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN---ENTPASYLA-- 140
K Y I+ S E VAK +++ + + + + TP Y A
Sbjct: 63 TKTYEGEVTLGIATTTEDSDGEIVAKQKVDRIIHRSDIEEVFRQLTGEIAQTPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVRTY 182
E+E P + T + L+ T S + + C GTYVRT
Sbjct: 123 VNGKKLYEYARAGVEVE-RPTRIVTIHELTLLEERDTFSGDTVSFRFRVVCSKGTYVRTL 181
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
V +G LG A M +L R SG S +D VTF Q
Sbjct: 182 AVMIGERLGYPAHMSDLVRTASGPFSLQD-CVTFEQ 216
>gi|212373387|dbj|BAE96951.2| Cbf5 [Vulcanisaeta distributa]
Length = 227
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 33/195 (16%)
Query: 50 AWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109
AW+K++L ++ GHSGTLDP+ SG L + + +T+ + + + KEYI + KLH V++
Sbjct: 2 AWVKKMLNLDRAGHSGTLDPRVSGVLPIALGESTKAMPAINTLDKEYIMVMKLHGDVDD- 60
Query: 110 AKASKKKMMIKQGLLDKHGKP------NENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163
K + ++++ + +P ++ ELE L+ D
Sbjct: 61 ---EKLRAVLREFTGAIYQRPPLRSAVKRQLRVKHVYELE-------------LLERDGK 104
Query: 164 LSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLV--------T 215
+I + ++GTY R +G VLG+GA M ELRR R G +E++ + T
Sbjct: 105 YV--LIRMNVESGTYARKLAYDIGEVLGIGANMRELRRTRVGCFTEKEAVTLQDLKDAYT 162
Query: 216 FRQEHMFEHIVSTWV 230
+++ E ++ T+V
Sbjct: 163 LYKDYGVEDLLRTYV 177
>gi|357007998|ref|ZP_09072997.1| tRNA pseudouridine synthase B [Paenibacillus elgii B69]
Length = 313
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP +SH+VVA ++RI+R ++ GH+GTLDP+ +G L +CI RATRLV+ Q
Sbjct: 7 GILPVWKPKGFTSHDVVAKVRRIVRIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 66
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA--SYLAELEAAP---- 146
K Y + L A + + + +++ L + P + T A ++ ++E P
Sbjct: 67 PKAYEATLLLGLATDTEDLSGEVLERVER--LGERLTPEQVTAAVLRFIGDIEQVPPMYS 124
Query: 147 ----NKKPTY------MKSNLISSDVTLSTGIIWLK---------------CQAGTYVRT 181
+ K Y ++ S VT+ GI L+ C GTY+RT
Sbjct: 125 AVKVDGKRLYELARQGVQVERKSRTVTIY-GIEVLETDWSGDYPQVKFRVNCSKGTYIRT 183
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
C +G LGV A M EL R +G
Sbjct: 184 LCADIGQALGVPAVMAELVRTSTG 207
>gi|282854624|ref|ZP_06263959.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|386069724|ref|YP_005984620.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
gi|422390108|ref|ZP_16470204.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|422458724|ref|ZP_16535375.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|422462994|ref|ZP_16539613.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|422467272|ref|ZP_16543826.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|422469350|ref|ZP_16545875.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|422565398|ref|ZP_16641047.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|282582206|gb|EFB87588.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|314966059|gb|EFT10158.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|314981892|gb|EFT25985.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|315090756|gb|EFT62732.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|315095005|gb|EFT66981.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|315104230|gb|EFT76206.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|327328062|gb|EGE69831.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|353454091|gb|AER04610.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
Length = 295
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 30/204 (14%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 4 LQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP--- 146
K+Y + +L V V ++ + + + A E++ P
Sbjct: 64 SLHDKDYTATMRL--GVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAV 121
Query: 147 -----NKKPTYMKSN------LISSDVTLS--------------TGIIWLKCQAGTYVRT 181
N + Y K L VT+S + + C +GTYVR
Sbjct: 122 SAIKVNGRRAYAKVRAGEDVVLRPRTVTVSRFEAIAIRRHGQVIDADVEVTCSSGTYVRA 181
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 182 LARDIGADLGVGGHLTALRRTRVG 205
>gi|403234756|ref|ZP_10913342.1| tRNA pseudouridine synthase B [Bacillus sp. 10403023]
Length = 308
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L+KP +SH+ V ++++++ +K GH+GTLDP SG L VC+ RAT++V+ +A
Sbjct: 3 GILLLNKPKGMTSHDCVFKVRKLVKMKKVGHTGTLDPDVSGVLPVCLGRATKIVEYVTAA 62
Query: 93 GKEY-------ISIFKLHSAVENVAKASKKKMMIKQGLLDK-HGKPNE--NTPASYLAE- 141
K Y S ++ E V + + ++K+ +++ H E TP Y A
Sbjct: 63 NKTYEGEVTLGFSTTTEDASGEIVGEKRVDREIMKEEVVNVLHSLTGEIIQTPPMYSAVK 122
Query: 142 ------LEAA--------PNKKPTYMKSNLIS----SDVTLSTGIIWLKCQAGTYVRTYC 183
E A P++ T K LIS +D T+S + C GTYVRT
Sbjct: 123 VNGKRLYEYARKGIVIDRPSRNITIHKLELISDINQNDQTVSFR-FRVTCSKGTYVRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
V MG LG + M +LRR SG + E +T + EHIV T +
Sbjct: 182 VQMGEKLGYPSHMSDLRRTSSGEFTLEQ-CITLDE---LEHIVKTGTI 225
>gi|296129361|ref|YP_003636611.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
gi|296021176|gb|ADG74412.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
Length = 336
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+VVA ++R+ K GH+GTLDP +G L+V I RATRL+ A
Sbjct: 40 GLLVVDKPAGWTSHDVVARVRRLASTRKVGHAGTLDPMATGVLVVGIGRATRLLTYVTGA 99
Query: 93 GKEYISIFKLH-----SAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA--- 140
K+Y + +L E A I +G LD + P+S A
Sbjct: 100 DKDYTATVRLGVVTTTDDAEGETLARTDASGIARGDLDAQVAALTGDVQQVPSSVSAIKV 159
Query: 141 ---------------ELEAAPNKKPTYMKSNL---ISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + ++ + +V + + + C +GTYVR
Sbjct: 160 DGQRAYARVRAGEDVELAARPVHVARFAVLDVRPGVVDEVPVLDVDVEVTCSSGTYVRAL 219
Query: 183 CVHMGLVLGVGAQMIELRRNR 203
+G LGVG + LRR R
Sbjct: 220 ARDLGAALGVGGHLTALRRTR 240
>gi|393778286|ref|ZP_10366565.1| tRNA pseudouridine synthase B [Ralstonia sp. PBA]
gi|392714752|gb|EIZ02347.1| tRNA pseudouridine synthase B [Ralstonia sp. PBA]
Length = 325
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 38/215 (17%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + KR+LR K GH+GTLDP +G L +C AT+ + A
Sbjct: 31 GVLLLDKPLGLSSNDALVRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDA 90
Query: 93 GKEYISIFKLHS-------------AVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
KEY++ +L A+ A+ M ++ L P E P Y
Sbjct: 91 DKEYVATLRLGQETTTGDAEGEVVKALPVTCDAAAVDMAVRAFL-----GPIEQVPPMYS 145
Query: 140 AELEAAPNKKP--TYMKSNLISSDVTLSTGI--------------IWLKCQAGTYVRTYC 183
A + + KP Y ++ + V + I + + C GTY+RT
Sbjct: 146 ALKK---DGKPLYAYARAGEVVERVARAVTIHEIEILSCTVPQVTLRVLCSKGTYIRTLA 202
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G LG GA + LRR R G S DG +T Q
Sbjct: 203 EDIGRHLGCGAHLTALRRTRVGALS-LDGALTLEQ 236
>gi|339326335|ref|YP_004686028.1| tRNA pseudouridine synthase B [Cupriavidus necator N-1]
gi|338166492|gb|AEI77547.1| tRNA pseudouridine synthase B [Cupriavidus necator N-1]
Length = 315
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + KR+LR K GH+GTLDP +G L +C AT+ + A
Sbjct: 19 GVLLLDKPLGLSSNDALVRAKRLLRAAKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEA 78
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K Y ++ +L A + A + + +++ D+ E AS+L E+E P
Sbjct: 79 DKTYDAVVRL-GARSSTGDAEGELLDVREVTCDRAAV--EQALASFLGEIEQVPPMHSAL 135
Query: 147 --NKKPTY------------MKSNLISSDVTLSTGI-------IWLKCQAGTYVRTYCVH 185
+ +P Y + I S L + + + C GTY+RT
Sbjct: 136 KKDGRPLYEYARAGQTVERAARRVTIRSIALLDCALPNAPSFTMRVTCSKGTYIRTLAED 195
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G LG GA + LRR G + DG VT Q
Sbjct: 196 IGEALGCGAHLTGLRRIAVGDLT-LDGAVTLEQ 227
>gi|385264793|ref|ZP_10042880.1| tRNA pseudouridine synthase B [Bacillus sp. 5B6]
gi|385149289|gb|EIF13226.1| tRNA pseudouridine synthase B [Bacillus sp. 5B6]
Length = 309
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|384265250|ref|YP_005420957.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898248|ref|YP_006328544.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens Y2]
gi|380498603|emb|CCG49641.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387172358|gb|AFJ61819.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens Y2]
Length = 309
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|452855613|ref|YP_007497296.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452079873|emb|CCP21631.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 309
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|154686083|ref|YP_001421244.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens FZB42]
gi|189030156|sp|A7Z4T7.1|TRUB_BACA2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|154351934|gb|ABS74013.1| TruB [Bacillus amyloliquefaciens FZB42]
Length = 309
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|134102366|ref|YP_001108027.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
gi|133914989|emb|CAM05102.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
Length = 536
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 34/216 (15%)
Query: 37 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
+DKP+ +SH+VVA ++RI+ K GH+GTLDP +G L++ ++RAT+L+ K Y
Sbjct: 2 VDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKAY 61
Query: 97 ISIFKLHSAV-------ENVAKASKKKM---MIKQGLLDKHGKPNENTPASYLA------ 140
++ +L +A E +++A ++ ++ G+ + G+ + P+S A
Sbjct: 62 LATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGE-LQQVPSSVSAVKVNGR 120
Query: 141 ------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
EL A P + L ++ ++ ++C +GTYVR +G
Sbjct: 121 RAYEIARSGEQVELAARPVTVSRFDVLALRRAEAATELDVL-VECSSGTYVRALARDLGA 179
Query: 189 VLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEH 224
LGVG + LRR R G GL T R E
Sbjct: 180 GLGVGGHLAALRRTRVG----PFGLATARTLDALEE 211
>gi|340359733|ref|ZP_08682207.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339884137|gb|EGQ73954.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 353
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 49/220 (22%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
R G V +DKP+ P+SH+VVA +R+ + GH+GTLDP +G L++ + RATRL+
Sbjct: 16 RDGVVLVDKPAGPTSHDVVALTRRLAATRRVGHAGTLDPAATGLLVLGVGRATRLLTYLV 75
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAA----- 145
A K Y + +L + + + ++ ++ +G D P + ++ A LE A
Sbjct: 76 GADKTYEATVRLGQ--DTLTEDAEGEVTASRGCPDPEAWPGGH--GAFAARLEEAMGSLT 131
Query: 146 --------------------------------PNKKPTYMKSNLISSDVTL----STGII 169
P + T + + + V T ++
Sbjct: 132 GRIAQVPSAVSAIRVDGVRSYARVRGGEDVVLPARSVTVHRLTRLGAPVAARAADGTAVV 191
Query: 170 WLK----CQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
L+ C +GTYVR +G L GA + LRR R G
Sbjct: 192 DLRLRVSCSSGTYVRALARDLGAALATGAHLTALRRTRVG 231
>gi|395203879|ref|ZP_10394922.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
gi|422439577|ref|ZP_16516398.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|422471817|ref|ZP_16548308.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|422571829|ref|ZP_16647406.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|313836836|gb|EFS74550.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|314929752|gb|EFS93583.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|314972185|gb|EFT16282.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|328907610|gb|EGG27374.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
Length = 298
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+ +G + ++KP+ P+SH+VV ++R+L K GH+GTLDP SG L+V ++RATRL+
Sbjct: 7 VPSGILVVNKPAGPTSHQVVGRVRRLLGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 66
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY---LAELEAAP 146
K+YI+ +L V V ++ + D +E A+ + E++ P
Sbjct: 67 ALHDKDYIATMRL--GVSTVTDDAEGDVTATT---DASAIDDEAIRAAMSRQVGEIQQVP 121
Query: 147 --------NKKPTYMKSNLISSDVTLSTGIIWLK---------------------CQAGT 177
+ + Y K DV L + + C +GT
Sbjct: 122 TAVSAIKVDGQRAYAKVR-AGEDVVLQPRAVTVSLFEATDIRRQGEVVDVDVEVTCSSGT 180
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSG 205
YVR +G LGVG + LRR R G
Sbjct: 181 YVRALARDVGTDLGVGGHLTALRRTRVG 208
>gi|383827928|ref|ZP_09983017.1| tRNA pseudouridine 55 synthase [Saccharomonospora xinjiangensis
XJ-54]
gi|383460581|gb|EID52671.1| tRNA pseudouridine 55 synthase [Saccharomonospora xinjiangensis
XJ-54]
Length = 298
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 43/209 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VVA ++R LR K GH+GTLDP +G L++ I+RAT+L+
Sbjct: 9 GLLIIDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGIERATKLLGHLALD 68
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMM------IKQGLLDKHG----KPNENTP 135
K Y++ L +A E +++A + + I+ G+ G KP+ +
Sbjct: 69 RKTYLATIALGAATTTDDAEGEVISRADGQAVAAVSDAEIEAGIAALTGDILQKPSAVSA 128
Query: 136 -------------ASYLAELEAAP------NKKPTYMKSNLISSDVTLSTGIIWLKCQAG 176
A +L A P + + T + + DV + C +G
Sbjct: 129 IKVGGKRAYAMVRAGEDVDLPARPVSVYRFDLRATRRDAGSLELDV-------MVDCSSG 181
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
TYVR +G LGVG + LRR +G
Sbjct: 182 TYVRALARDLGAALGVGGHLAALRRTSAG 210
>gi|120403320|ref|YP_953149.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
gi|119956138|gb|ABM13143.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
Length = 302
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP +SH+VV +R+ K GH+GTLDP +G L+V I+RAT+++ +
Sbjct: 14 GLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTAT 73
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-- 140
K Y + +L +++V+ A I+ + G P + P++ A
Sbjct: 74 DKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRG-PIDQIPSAVSAIK 132
Query: 141 ----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
EL A P + + + D L + + C +GTY+R
Sbjct: 133 IAGKRAYQMVRDGQTVELAARPVRIDRFEVLE-VRRDGELVDVDVAVDCSSGTYIRALAR 191
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 192 DVGAALGVGGHLTALRRTRVG 212
>gi|148657854|ref|YP_001278059.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
gi|148569964|gb|ABQ92109.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
Length = 300
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVK-SQQS 91
G++N+DKP+ +SH+VVA I+R+ + GH+GTLDP +G L+V + ATRL++ Q
Sbjct: 3 GFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQHQ 62
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGL--LDKHGKPNE---------NTPASYLA 140
K+Y + L V + +++ + L LD+ TP Y A
Sbjct: 63 TLKQYRATVCL--GVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120
Query: 141 ---------ELEAA------PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
EL A P ++ + +L++ D L T + + C +GTY+R
Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLT--LDVVCGSGTYIRALARD 178
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG GA + LRR G ED L
Sbjct: 179 LGAALGCGAHLAALRRTAVGTFRIEDAL 206
>gi|284030875|ref|YP_003380806.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
gi|283810168|gb|ADB32007.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
Length = 299
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH VVA I+R+ K GH+GTLDP +G L+V ++RATRL+ Q A
Sbjct: 11 GIVVVDKPAGLTSHTVVARIRRLAGTRKVGHAGTLDPMATGILVVGLNRATRLLGHLQLA 70
Query: 93 GKEYISIFKL-HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNK--- 148
K Y + L + + A+ + L + + E A + + P+K
Sbjct: 71 DKSYDATVLLGATTTTDDAEGEIQTTASPAALGEVTAEAIEKAVAGFRGRISQVPSKVSA 130
Query: 149 -----KPTYMKSN------LISSDVTLS-----------TGI---IWLKCQAGTYVRTYC 183
+ Y + L + +VT+S I I + C +GTY+R
Sbjct: 131 IKVDGRRAYERVRAGEEVALKAREVTVSRYDVLDVRSAAQAIEVDISVDCSSGTYIRALA 190
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+G+ LGVG + LRR R G
Sbjct: 191 RDLGVELGVGGHLTMLRRTRVG 212
>gi|297569832|ref|YP_003691176.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
gi|296925747|gb|ADH86557.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
Length = 241
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 29/212 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQS 91
G + +DKP+ PSS +V ++R +K GH+GTLDP SG L+VCI R ATRLV
Sbjct: 5 GVLPVDKPAGPSSFRMVQLVRRATGIKKVGHAGTLDPFASGLLLVCIGRPATRLVDRLMV 64
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----- 146
KEY + +L V + +++ ++ + H E ++ EL +P
Sbjct: 65 GDKEYEATVQL--GVTTATHDPEGEILDRRPVTAAHFDALEAALDNFRGELWQSPPAFSA 122
Query: 147 ---NKKPTYM------------------KSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
KP Y + ++S D ++ + C GTY+R+
Sbjct: 123 AKHQGKPLYSYARRGEMISKPPRRVLIHRLEVVSRDHRQHRVVLRVCCSKGTYIRSLAHD 182
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFR 217
+G LG GA + LRR SG E L R
Sbjct: 183 LGQALGCGAHLAALRRLASGDFRVEQALAGER 214
>gi|373857335|ref|ZP_09600077.1| tRNA pseudouridine synthase B [Bacillus sp. 1NLA3E]
gi|372452985|gb|EHP26454.1| tRNA pseudouridine synthase B [Bacillus sp. 1NLA3E]
Length = 305
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V +++ILR ++ GH+GTLDP+ G L +CI RAT++ + +A
Sbjct: 3 GILPLFKPKGMTSHDCVFKLRKILRIKRIGHTGTLDPEVDGVLPICIGRATKVAEYITNA 62
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMMIKQ---GLLDKHGKPNENTPASYLA-- 140
GK Y + SA E +A+ + K +Q +L P TP Y A
Sbjct: 63 GKAYEGQVTIGSATTTEDATGEIIAEKAVDKSFTRQEILAMLHSLTGPITQTPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVRTY 182
E+E P++ T L+ + I + C GTY+RT
Sbjct: 123 VNGKRLYEYARQGIEVE-RPSRTVTIYSLELLDDREIFAGESIQFRFRVSCSKGTYIRTL 181
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWVL 231
V MG LG A M L R ++ E+ + + E M E+ + VL
Sbjct: 182 AVMMGEQLGFPAHMSMLTRTQAASFGLEECVTLAQVEEMVENGTFSDVL 230
>gi|253573570|ref|ZP_04850913.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847098|gb|EES75103.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
Length = 305
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA + IL+ ++ GH+GTLDP +G L +C+ RATR+V+ Q
Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTP------- 135
KEY + L A +E V + + +++ L G ++ P
Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125
Query: 136 -ASYLAEL-------EAAPNKKPTYMKSNLISSDVTLSTGIIWLK-CQAGTYVRTYCVHM 186
L EL E P + Y L L I + C GTY+RT CV +
Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LGV A M EL+R S
Sbjct: 186 GRALGVPAAMTELKRTMSA 204
>gi|440780950|ref|ZP_20959421.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
gi|440221538|gb|ELP60743.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
Length = 289
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 29/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K ++ +S +VV ++++ + +K GH+GTLDP +G L +CI +AT+LV
Sbjct: 3 GILNVYKKADMTSFDVVRIVRKLSKIKKVGHTGTLDPLATGVLPICIGKATKLVDYIMDD 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K Y + KL + K +I+ ++ K NT S+ +E P
Sbjct: 63 FKVYDAALKLGVTSDTYDKEGS---IIENNCVNIAEKDIINTVKSFQGTIEQIPPMYSAL 119
Query: 147 --NKKPTYMKS----------------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
N K Y + +++ +++++ +KC GTY+R+ C +GL
Sbjct: 120 KVNGKRLYDLARKGIEIERKSRQITIFDIVITNISIPYVYFRIKCSKGTYIRSLCNDIGL 179
Query: 189 VLGVGAQMIELRRNRSGIQSEEDGLVTFR--QEHMFEHIV 226
LG GA M L R +GI ++++ + R +E++ ++++
Sbjct: 180 KLGCGALMWSLERTATGIFTKDNSVNIDRLTEENIKDYLI 219
>gi|375308272|ref|ZP_09773558.1| tRNA pseudouridine synthase b [Paenibacillus sp. Aloe-11]
gi|375079696|gb|EHS57918.1| tRNA pseudouridine synthase b [Paenibacillus sp. Aloe-11]
Length = 312
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 28/205 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA +R+L ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 13 GILPVLKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRVVEYMQER 72
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQ----GLLDKHGKPNENTPASYLA-- 140
KEY + +L A + V + S++ + + + L++ P Y A
Sbjct: 73 PKEYQATLRLGIATDTEDLTGTVTEESERPVEVTEVEAKATLERFVGTISQVPPMYSALK 132
Query: 141 -----ELEAAPNKKPTYMKSNLISSDVTLSTGI--------IWLK--CQAGTYVRTYCVH 185
E A K KS + TG I + C GTY+RT CV
Sbjct: 133 VNGKRLYELAREGKTVERKSREVDIYELEMTGFEQTGSYVDISFRALCSKGTYIRTLCVD 192
Query: 186 MGLVLGVGAQMIELRRNRS-GIQSE 209
+G LG + M++L R S GI +E
Sbjct: 193 IGRALGYPSTMVKLERTMSAGISAE 217
>gi|417931279|ref|ZP_12574647.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
gi|340776018|gb|EGR98068.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
Length = 295
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 38/208 (18%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+ +G + +DKP+ +SH+VV ++R++ K GH+GTLDP +G LIV I+RATRL+
Sbjct: 4 LHSGILVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMANGVLIVGINRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL---AELEAAP 146
K+Y + +L V V ++ ++ D +E A+ L +++ P
Sbjct: 64 SLHDKDYTATMRL--GVGTVTDDAEGEVTATT---DASAIDDEAIGAAMLRQTGQIQQVP 118
Query: 147 --------NKKPTYMKSNLISSDVTL-----------STGI----------IWLKCQAGT 177
N + Y K DV L +T I + + C +GT
Sbjct: 119 TAVSAIKVNGQRAYAKVRA-GEDVVLQPRAVTVSRFEATAIRRQGQVVDVDVEVTCSSGT 177
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSG 205
YVR +G LGVG + LRR R G
Sbjct: 178 YVRALARDVGADLGVGGHLTALRRTRVG 205
>gi|443289484|ref|ZP_21028578.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
gi|385887637|emb|CCH16652.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
Length = 294
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 39/206 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VVA I+R+ + + GH GTLDP +G L++ + RATRL+ A
Sbjct: 5 GLIVVDKPGGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGA 64
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY 152
GK Y +L A V ++ ++ G+ ++ S L L ++ P+
Sbjct: 65 GKSYTGTIRLGQA--TVTDDAEGDVIAST----PAGQVTDDAIRSALTALSGEVDQVPSA 118
Query: 153 MKS------------------NLISSDVTLS-TGIIWLK--------------CQAGTYV 179
+ + L + VT+S ++ ++ C +GTY+
Sbjct: 119 VSAIKIDGQRAYKRVRDGESVELPARRVTISRLEVLAIRRTEPDVVDVDVDVTCSSGTYI 178
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R GL LGVG + LRR G
Sbjct: 179 RAIARDAGLALGVGGHLTALRRTAVG 204
>gi|374296758|ref|YP_005046949.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
gi|359826252|gb|AEV69025.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
Length = 295
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VVA+++R+L+ +K GH+GTLDP G L VCI +AT+ ++
Sbjct: 3 GILNILKPPGMTSFDVVAYLRRLLKEKKIGHTGTLDPGAVGVLPVCIGKATKTIEYLTDK 62
Query: 93 GKEYISIFKLHSAVE------NVAK---ASKKKMMIKQGLLDKHGKPNENTP-------- 135
KEY + L + + NV K + +K I + ++ G+ N+ P
Sbjct: 63 DKEYRAELTLGISTDTQDSYGNVLKKCDVNIEKEEIYKAIMSFVGEYNQIPPMYSAVKVE 122
Query: 136 ASYLAEL-------EAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
L EL E AP K + +K N + DV C GTY+RT
Sbjct: 123 GKKLYELARDGITIERAPRKVAIHSIDIVNIKDNRVIFDVV---------CSKGTYIRTL 173
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
C +G LG G M L R RSG
Sbjct: 174 CSDIGEKLGCGGHMSFLVRTRSG 196
>gi|430750266|ref|YP_007213174.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
gi|430734231|gb|AGA58176.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
Length = 315
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
LQ+ Q G + + KP+ +SH+VVA ++R R + GH+GTLDP+ +G L +C+ R
Sbjct: 7 LQQMEQSKELEGILAVWKPAGWTSHDVVAKVRRWTRMRRIGHAGTLDPQVTGVLPLCLGR 66
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVE---------NVAKASK-KKMMIKQGLLDKHGKPN 131
ATR+V+ Q K Y ++ +L A + + + AS + M+++ L G+
Sbjct: 67 ATRVVEYMQELPKAYETVMQLGVATDTEDLTGTVLDTSDASHVTEAMLREALARFIGE-I 125
Query: 132 ENTPASYLAE-------LEAAPNKKPTYMKSNLIS--------SDVTLSTGIIWLK--CQ 174
E P Y A E A K K+ ++ +++ + I C
Sbjct: 126 EQVPPMYSAVKVGGRKLYELAREGKTVERKARKVTIHSLELRFAELGVPRPRIGFGAVCS 185
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHM 221
GTY+RT CV +G LGV A M L R S E D L R E +
Sbjct: 186 KGTYIRTLCVDIGRALGVHAAMESLVRTMSAGLGESDCLTMERIEAL 232
>gi|156741116|ref|YP_001431245.1| tRNA pseudouridine synthase B [Roseiflexus castenholzii DSM 13941]
gi|156232444|gb|ABU57227.1| tRNA pseudouridine synthase B [Roseiflexus castenholzii DSM 13941]
Length = 297
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVK-SQQS 91
G++N+DKPS +SH+VV I+R+ + GH+GTLDP +G L+V + ATRL++ Q
Sbjct: 3 GFLNIDKPSGMTSHDVVVRIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQHQ 62
Query: 92 AGKEYISIFKLHS----------AVENVAKASKKKMMIKQGLLDKHGKPNENTP------ 135
K Y++ L + V A + MI++ L G + P
Sbjct: 63 TLKRYLAAVCLGATTTTDDANGEVVVQQALPPLDRAMIEEALAPLRGTIWQTPPMYAALH 122
Query: 136 -------ASYLAELEAAPNKKPTYMKS-NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
A A + P + Y++ L+ L T + + C +GTY+R +G
Sbjct: 123 HQGRRLYALARAGVTVEPPPRQVYIERLELVEYQPPLLT--LDVVCGSGTYIRALARDLG 180
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
+ LG GA + LRR G ED +
Sbjct: 181 VALGCGAHLAALRRTAVGAFRVEDAI 206
>gi|296171640|ref|ZP_06852854.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894001|gb|EFG73764.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 299
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ +DRAT+++ A
Sbjct: 9 GIVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVDRATKILGLLTGA 68
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-- 140
K Y + +L + +V+ A + I + G E P++ A
Sbjct: 69 SKSYAATIRLGQTTSTEDAEGEVLHSVSAAHLTREAIGAAVAGLRGD-IEQVPSAVSAIK 127
Query: 141 ----------------ELEAAPNKKPTYM------KSNLISSDVTLSTGIIWLKCQAGTY 178
EL A P + + L+ DV + C +GTY
Sbjct: 128 VEGRRAYRLVREGQAVELAARPVRIDRFEVCDVRPAGQLVDVDV-------EVDCSSGTY 180
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
VR +G LGVG + LRR R G
Sbjct: 181 VRALARDVGAALGVGGHLTALRRTRVG 207
>gi|212373364|dbj|BAE96940.2| Cbf5 [Metallosphaera sedula DSM 5348]
Length = 226
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 20/171 (11%)
Query: 51 WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110
W+K + + GH GTLDPK +G L + + +AT+++ +GKEY+ + ++H +
Sbjct: 3 WVKTMFNLPRVGHGGTLDPKVTGVLPIGLGKATKIMSVVTKSGKEYVCLMEVHCDFQE-- 60
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTG--- 167
+ + + K+ + + KP + K K + S +V G
Sbjct: 61 --ERLRAIAKEFVGTIYQKPPVRSSV------------KRRVRKRKIYSLEVLEMEGRRV 106
Query: 168 IIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
++ + + GTY+R C MG++LG GA M ELRR RSGI + ED +VT +Q
Sbjct: 107 LMKISSEPGTYMRKICHDMGILLGCGAHMRELRRTRSGIFT-EDTVVTLQQ 156
>gi|296451310|ref|ZP_06893050.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296880338|ref|ZP_06904301.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
gi|296259916|gb|EFH06771.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296428579|gb|EFH14463.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
Length = 301
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 31/211 (14%)
Query: 39 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYIS 98
KP+ +SH+VV+ +++IL +K GH+GTLDP SG L +CI +AT++ + + K YI
Sbjct: 9 KPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKDKSYIC 68
Query: 99 IFKL-------HSAVENVAKASKKKMM---IKQGLLDKHGKPNENTPASYLAELEAAPNK 148
L ++ E + K K IK+ + G+ N+ P Y A L+ +
Sbjct: 69 ELTLGISTDTYDASGEILKKVDDFKFSNEEIKRAFDTQRGEINQ-LPPIYSA-LKVNGKR 126
Query: 149 KPTYMKSNLISSDVTLSTG-----------------IIWLKCQAGTYVRTYCVHMGLVLG 191
++S S++TL T + +++C GTYVR+ C +G LG
Sbjct: 127 MCDLVRSGR-QSEITLKTRRVNIKNIKILSIKGNKVMFYVECSKGTYVRSICHDIGEYLG 185
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
GA M L R SG + + D +T + +F
Sbjct: 186 CGAHMSFLNRTSSG-KFDLDNSITLEELELF 215
>gi|398782102|ref|ZP_10545933.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
gi|396996997|gb|EJJ07975.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
Length = 326
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 53/216 (24%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG V +DKP+ +SH+VVA ++ + R + GH+GTLDP +G L++ I+RAT+L+
Sbjct: 26 AGLVIVDKPAGFTSHDVVAKMRGMARTRRVGHAGTLDPMATGVLVLGIERATKLLGHLAL 85
Query: 92 AGKEYISIFKLHSA-----VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAA- 145
KEY+ +L E ASK HG E+ A +A L A
Sbjct: 86 TEKEYVGTIRLGQTTITDDAEGEITASKA----------AHGLAREDIDAG-IARLSGAI 134
Query: 146 ---PNK-------------------------KPTYMKSNLISS-------DVTLSTG-II 169
P+K +P + S ++ S D T T ++
Sbjct: 135 MQVPSKVSAIKIDGKRSYSRVRDGEDVEIPARPVTVSSFVLHSAHETEAEDGTPVTDLLV 194
Query: 170 WLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
++C +GTY+R +G LGVG + LRR R G
Sbjct: 195 SVECSSGTYIRALARDLGAGLGVGGHLTALRRTRVG 230
>gi|429505220|ref|YP_007186404.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486810|gb|AFZ90734.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 309
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPAVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|422418927|ref|ZP_16495882.1| tRNA pseudouridine synthase B, partial [Listeria seeligeri FSL
N1-067]
gi|313633411|gb|EFS00247.1| tRNA pseudouridine synthase B [Listeria seeligeri FSL N1-067]
Length = 276
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELEEISAEELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + D L+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGDTALTETNPTFRLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFE 223
V +G +LG A M EL R RSG +ED L + M +
Sbjct: 182 VMIGELLGYPAHMSELERTRSGFFKKEDCLTLAEIDEMMQ 221
>gi|289434609|ref|YP_003464481.1| tRNA pseudouridine synthase B [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170853|emb|CBH27395.1| tRNA pseudouridine synthase B [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 304
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELEEISAEELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + D L+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGDTALTETNPTFRLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFE 223
V +G +LG A M EL R RSG +ED L + M +
Sbjct: 182 VMIGELLGYPAHMSELERTRSGFFKKEDCLTLAEIDEMMQ 221
>gi|239826660|ref|YP_002949284.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
gi|239806953|gb|ACS24018.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
Length = 302
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 32/216 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ VA I+R+L+ +K GH+GTLDP SG L +CI +ATR+ + A
Sbjct: 3 GVLLLHKPPGMTSHDCVARIRRMLQIKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGA 62
Query: 93 GKEY-------ISIFKLHSAVENVAKASKKKMMIK---QGLLDKHGKPNENTPASYLA-- 140
K Y I+ S E +AK +++ + + + + TP Y A
Sbjct: 63 TKTYEGEVTLGIATTTEDSTGEIIAKQKVDRVIPRDEIEAVFRQLTGEVAQTPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVRTY 182
E+E P + T + L+ + I+ + C GTY+RT
Sbjct: 123 VKGKKLYEYARAGIEVE-RPTRIVTIHELTLLDERDAFAGDIVSFRFRVTCSKGTYIRTL 181
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
V +G LG A M +L R SG S +D VTF Q
Sbjct: 182 AVMIGERLGYPAHMSDLVRTASGPFSLQD-CVTFEQ 216
>gi|375362311|ref|YP_005130350.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731662|ref|ZP_16170785.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371568305|emb|CCF05155.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073875|gb|EKE46865.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 309
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +++ L LD+ P E P Y A
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVREPLEEADIKAVLDELKGPQEQVPPMYSA-- 121
Query: 143 EAAPNKKPTYM-----------KSNLISSDVTLSTGIIW----------LKCQAGTYVRT 181
N K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 122 -VKVNGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRT 180
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 181 LAVTIGEKLGYPAHMSHLIRTASG 204
>gi|292669511|ref|ZP_06602937.1| tRNA pseudouridine synthase B [Selenomonas noxia ATCC 43541]
gi|292648874|gb|EFF66846.1| tRNA pseudouridine synthase B [Selenomonas noxia ATCC 43541]
Length = 291
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+VV ++RI + ++ GH+GTLDP +G L V + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVVDIVRRIFKQKRVGHAGTLDPAAAGVLPVALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSAVEN-------VAKASKKKMMIKQGL---LDKHGKPNENTPASYLA-- 140
K Y + A + +A A+ + ++ L L + TP +Y A
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGDVIASAAHPVLPPEEELHAVLLRFVGQIRQTPPAYSAIK 122
Query: 141 -----ELEAAPNKKPTYMKS--------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+ A M++ L+ +D ++ + C GTY+R+ C+ +G
Sbjct: 123 IGGQRAYDLARQGTEVEMRARSVMIHRLELLYADAERRRILVDVDCGKGTYIRSLCMDIG 182
Query: 188 LVLGVGAQMIELRRNRSGIQSEED 211
+G+ A M L R R G S D
Sbjct: 183 AAIGLPATMSFLLRVRVGRFSLAD 206
>gi|331698429|ref|YP_004334668.1| tRNA pseudouridine synthase B [Pseudonocardia dioxanivorans CB1190]
gi|326953118|gb|AEA26815.1| tRNA pseudouridine synthase B [Pseudonocardia dioxanivorans CB1190]
Length = 298
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 56/214 (26%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VVA ++RILR K GH+GTLDP +G L+ +DR T+L+
Sbjct: 3 GLVIVDKPAGFTSHDVVARLRRILRTRKVGHAGTLDPMATGVLVCGVDRGTKLLG----- 57
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASY---------LAELE 143
H A++ A + ++ + D G+P A+ +A L
Sbjct: 58 ----------HLALDTKAYTATIRLGVATTTDDAEGEPTGGADAAAVDEAAVRAGMAALT 107
Query: 144 AAPNKKPTYMKSNLISS-----------DVTLST-----------------GI----IWL 171
A ++P+ + + + DV L G+ + +
Sbjct: 108 GAIEQRPSSVSAIKVDGRRAYARVRAGEDVVLPARPVTVSEFTLDALRRGPGVTDLDVTV 167
Query: 172 KCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
C +GTYVR +G LGVG + LRR R G
Sbjct: 168 SCSSGTYVRALARDLGAGLGVGGHLTALRRTRVG 201
>gi|422421989|ref|ZP_16498942.1| tRNA pseudouridine synthase B [Listeria seeligeri FSL S4-171]
gi|313638091|gb|EFS03359.1| tRNA pseudouridine synthase B [Listeria seeligeri FSL S4-171]
Length = 305
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 4 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 63
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 64 GKVYVAEITLGKST-TTEDATGETVMTKELEEISAEELQAALTKLTGKITQIPPMFSAVK 122
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + D L+ T + + C GTY+RT
Sbjct: 123 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGDTALTETNPTFRLEISCGKGTYIRTLA 182
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFE 223
V +G +LG A M EL R RSG +ED L + M +
Sbjct: 183 VMIGELLGYPAHMSELERTRSGFFKKEDCLTLAEIDEMMQ 222
>gi|354581529|ref|ZP_09000433.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
gi|353201857|gb|EHB67310.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
Length = 304
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++ I+R ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGIVRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYMQEL 65
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAEL 142
KEY ++ +L A +E + ++ L G+ ++ P ++
Sbjct: 66 PKEYEAVLRLGYATDTEDVTGTVIEEAESVLVTREEAEEALRSFVGEISQVPPMYSAVKV 125
Query: 143 ------EAAPNKKPTYMKSNLISSDVTLSTGI----------IWLKCQAGTYVRTYCVHM 186
E A K KS ++ TG + C GTY+RT CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTGYDASGAYPEISFRVLCSKGTYIRTLCVDI 185
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LGV + M+ L R S
Sbjct: 186 GRKLGVPSVMVRLVRTISA 204
>gi|394994011|ref|ZP_10386747.1| tRNA pseudouridine synthase B [Bacillus sp. 916]
gi|393805090|gb|EJD66473.1| tRNA pseudouridine synthase B [Bacillus sp. 916]
Length = 309
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++L+ +K GH+GTLDP+ SG L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDK 63
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQGL--------LDKHGKPNENTPASYLAEL 142
K Y + L ++ E+ + +K+ L LD+ P E P Y A +
Sbjct: 64 SKTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSA-V 122
Query: 143 EAAPNKKPTYM---------KSNLISSDVTLSTGIIW----------LKCQAGTYVRTYC 183
+ K Y K N+ D+ L++ + + + C GTYVRT
Sbjct: 123 KVKGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRTLA 182
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
V +G LG A M L R SG
Sbjct: 183 VTIGEKLGYPAHMSHLIRTASG 204
>gi|238916829|ref|YP_002930346.1| tRNA pseudouridine synthase B [Eubacterium eligens ATCC 27750]
gi|238872189|gb|ACR71899.1| tRNA pseudouridine synthase B [Eubacterium eligens ATCC 27750]
Length = 303
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K +SH+VVA ++ IL+ +K GH+GTLDP G L VCI +AT+L
Sbjct: 3 GVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLITDW 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
GK Y ++ L + + + + K ++ Q ++ ++ E E P
Sbjct: 63 GKTYEAVMLLGTTTDTLDISGK---IVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSAL 119
Query: 147 -----------------NKKPTYMKSNLIS-SDVTLS----TGIIWLKCQAGTYVRTYCV 184
+KP + N + +D+ LS T I + C GTY+R+ C
Sbjct: 120 KYNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCD 179
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LG GA M++L R R G
Sbjct: 180 DIGKKLGCGACMMKLTRTRVG 200
>gi|383782126|ref|YP_005466693.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
gi|381375359|dbj|BAL92177.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
Length = 293
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +SH+VVA I+R+ + + GH GTLDP +G LI+ ++RATRL+ A
Sbjct: 5 GLIVVDKPAGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGA 64
Query: 93 GKEYISIFKL-HSAVENVAKASKKKM---------MIKQGLLDKHGKPNENTPASYLA-- 140
K Y +L S + + A+ I + L + G+ ++ P++ A
Sbjct: 65 SKSYAGTIRLGQSTITDDAEGEITAQTPAGHIDDDAINESLRTQLGEIDQ-VPSAVSAIK 123
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK----CQAGTYVRTYC 183
E + P ++ T + ++ D+ S +I + C +GTY+R
Sbjct: 124 IKGVRSYKRVRDGEEVSLPARRITISRLEVL--DIRRSGDVIDVDIDVTCSSGTYIRAIA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR G
Sbjct: 182 RDLGAALGVGGHLTALRRTAVG 203
>gi|229918671|ref|YP_002887317.1| tRNA pseudouridine synthase B [Exiguobacterium sp. AT1b]
gi|229470100|gb|ACQ71872.1| tRNA pseudouridine synthase B [Exiguobacterium sp. AT1b]
Length = 302
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDK + +SH+ V ++++ + +K GH+GTLDP+ +G L +C+ RAT+L +
Sbjct: 5 GVLVLDKDAGMTSHDCVFKLRKLFQTKKVGHTGTLDPEVTGVLPICLGRATKLSRFITDE 64
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLDKHGKP----NENTPASYLA- 140
GK Y++ + +A E VA+ S + + +D+ + E P Y A
Sbjct: 65 GKRYVAEVTIGTATMTEDAHGEVVAQKSVTPNDLDESQIDEAMRQLTGMIEQIPPYYSAV 124
Query: 141 -----ELEAAPNKKPTYMKSNLI--------SSDVTLSTGI----IWLKCQAGTYVRTYC 183
+L K T + +S++T + + + C GTY+RT
Sbjct: 125 KVNGKKLYEYARKGQTVERPRRTVEIHRLERTSELTFEADVCRFRMEIDCGKGTYIRTLA 184
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG A M ELRR SG EE+ +
Sbjct: 185 VQIGEKLGYPAHMSELRRTSSGTFEEENAV 214
>gi|420236633|ref|ZP_14741115.1| tRNA pseudouridine synthase B [Parascardovia denticolens IPLA
20019]
gi|391880256|gb|EIT88751.1| tRNA pseudouridine synthase B [Parascardovia denticolens IPLA
20019]
Length = 326
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G + +DKP +SH+VVA +R+L K GH+GTLDP +G L++ +ATRL+
Sbjct: 9 SGVMVVDKPQGVTSHDVVAAARRLLHTRKVGHAGTLDPMATGVLVLGFGKATRLLNVITD 68
Query: 92 AGKEYISIFKLHSAV--------------------ENVAKASKKKMMIKQGLLDKHGKPN 131
A K Y ++ +L A + + +A+KK Q + +
Sbjct: 69 ADKTYETVIRLGQATTTDDAEGELTGFFDLSAISRQMICEAAKKLTGRIQQVPSAYSAIK 128
Query: 132 ENTPASY-LA---ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK------CQAGTYVRT 181
N SY LA E P + T + ++S D + L C +GTY+R+
Sbjct: 129 VNGRRSYDLARQGEEVHLPARPVTIEEFTILSVDEAQAGATPVLDVHARVTCSSGTYIRS 188
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G +LGVGA +I LRR R G
Sbjct: 189 LGRDLGSLLGVGAHLIMLRRLRVG 212
>gi|335050642|ref|ZP_08543599.1| tRNA pseudouridine synthase B [Propionibacterium sp. 409-HC1]
gi|342211674|ref|ZP_08704399.1| tRNA pseudouridine synthase B [Propionibacterium sp. CC003-HC2]
gi|419421634|ref|ZP_13961862.1| tRNA pseudouridine synthase B [Propionibacterium acnes PRP-38]
gi|422395398|ref|ZP_16475438.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL097PA1]
gi|422495190|ref|ZP_16571479.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA1]
gi|313813340|gb|EFS51054.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA1]
gi|327334269|gb|EGE75983.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL097PA1]
gi|333769278|gb|EGL46413.1| tRNA pseudouridine synthase B [Propionibacterium sp. 409-HC1]
gi|340767218|gb|EGR89743.1| tRNA pseudouridine synthase B [Propionibacterium sp. CC003-HC2]
gi|379978125|gb|EIA11450.1| tRNA pseudouridine synthase B [Propionibacterium acnes PRP-38]
Length = 295
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 4 LQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP--- 146
K+Y + +L V V ++ + + + A E++ P
Sbjct: 64 SLHDKDYTATVRL--GVGTVTDDAEGDVTVTTDASAIDDRAIHAAMARQTGEIQQVPAAV 121
Query: 147 -----NKKPTYMKSNLISSDVTLSTGIIWLK---------------------CQAGTYVR 180
N + Y K DV L + + C +GTYVR
Sbjct: 122 SAIKVNGRRAYAKVRA-GEDVVLRPRAVTVSRFEAIAIRRHGQVIDVDVEATCSSGTYVR 180
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 181 ALARDVGADLGVGGHLTALRRTRVG 205
>gi|392957563|ref|ZP_10323086.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
gi|391876526|gb|EIT85123.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
Length = 306
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 46/223 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP+ +SH+ VA ++++L+ +K GH+GTLDP+ SG L +CI RAT++ +
Sbjct: 7 GILPLLKPAGMTSHDCVARLRKLLKTKKVGHTGTLDPEVSGVLPICIGRATKVAQYMSDY 66
Query: 93 GKEYISIFKL--HSAVENVAKASKKKMMIKQG--LLDKHGKPNENTPASYLAELEAAP-- 146
K Y + + + E+ ++ + +G L+D +S++ E++ P
Sbjct: 67 PKAYEAEVTVGWSTTTEDAHGEKVEEQSVPEGLELVD-----VVRVASSFVGEIKQVPPM 121
Query: 147 ------NKKPTYM-------------------------KSNLISSDVTLSTGIIWLKCQA 175
N K Y S+L D T S ++ C
Sbjct: 122 YSAVKVNGKKLYQYAREGIEVERPVRQATIFELSVTTTASHLPGPDPTFS---FFVSCSK 178
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
GTY+RT V MG LG A M LRR SG ED L TF +
Sbjct: 179 GTYIRTLAVDMGKALGYPAHMSHLRRTSSGPFKLEDCL-TFEE 220
>gi|403745565|ref|ZP_10954360.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121283|gb|EJY55597.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
Length = 304
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 26/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP P+SH+VVA ++ L K GH+GTLDP SG L++C+ ATRL++ SA
Sbjct: 7 GVLLVDKPVGPTSHDVVAKVRHKLGTRKVGHAGTLDPGASGLLMICVGNATRLLEYFTSA 66
Query: 93 GKEYIS--IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNE-------NTPASYLA--- 140
K Y +F + + ++ A + ++ K E T +Y A
Sbjct: 67 DKSYTGTVVFGIGTDTDDAAGSVTRQASAAHLTFADLRKAAEAFLGVTMQTVPAYSAVHI 126
Query: 141 ------------ELEAAPNKK--PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
E A P +K ++ + ++ + + C GTYVR C +
Sbjct: 127 DGVRAYELARKGETVALPERKIHVSHFELADFRAEGECCSASFSVTCSKGTYVRALCRDL 186
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LGV A M LRR G
Sbjct: 187 GERLGVPAHMATLRRTAVG 205
>gi|255100335|ref|ZP_05329312.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-63q42]
Length = 301
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 35/213 (16%)
Query: 39 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYIS 98
KP+ +SH+VV+ +++IL +K GH+GTLDP SG L +CI +AT++ + + K YI
Sbjct: 9 KPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKDKSYIC 68
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY--MKSN 156
L + + + + ++K+ +D NE+ ++ + P Y +K N
Sbjct: 69 ELTLGISTDTYDASGE---ILKK--VDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 157 ------LI----SSDVTLSTG-----------------IIWLKCQAGTYVRTYCVHMGLV 189
L+ S++TL T + +++C GTYVR+ C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
LG GA M L R SG + + D +T + +F
Sbjct: 184 LGCGAHMSFLNRTSSG-KFDLDNSITLEELELF 215
>gi|254974859|ref|ZP_05271331.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-66c26]
gi|255092246|ref|ZP_05321724.1| tRNA pseudouridine synthase B [Clostridium difficile CIP 107932]
gi|255313986|ref|ZP_05355569.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-76w55]
gi|255516666|ref|ZP_05384342.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-97b34]
gi|255649765|ref|ZP_05396667.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-37x79]
gi|260682921|ref|YP_003214206.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260686519|ref|YP_003217652.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
gi|306519870|ref|ZP_07406217.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-32g58]
gi|384360509|ref|YP_006198361.1| tRNA pseudouridine synthase B [Clostridium difficile BI1]
gi|260209084|emb|CBA62234.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260212535|emb|CBE03491.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
Length = 301
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 35/213 (16%)
Query: 39 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYIS 98
KP+ +SH+VV+ +++IL +K GH+GTLDP SG L +CI +AT++ + + K YI
Sbjct: 9 KPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKDKSYIC 68
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY--MKSN 156
L + + + + ++K+ +D NE+ ++ + P Y +K N
Sbjct: 69 ELTLGISTDTYDASGE---ILKK--VDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 157 ------LI----SSDVTLSTG-----------------IIWLKCQAGTYVRTYCVHMGLV 189
L+ S++TL T + +++C GTYVR+ C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
LG GA M L R SG + + D +T + +F
Sbjct: 184 LGCGAHMSFLNRTSSG-KFDLDNSITLEELELF 215
>gi|363420316|ref|ZP_09308409.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
gi|359735900|gb|EHK84855.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
Length = 307
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 36/207 (17%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG + +DKP+ +SH+VVA +R+L K GH+GTLDP +G L++ ++RAT+L+
Sbjct: 15 RAGLLVVDKPAGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 74
Query: 91 SAGKEYISIFKLHSAV-------ENVAKASKKKM---MIKQGLLDKHGKPNENTPASYLA 140
K Y + +L + E VA + I +G+ G E PAS A
Sbjct: 75 LTTKSYTATIRLGQSTVTDDAEGETVATTDATHVTDEQIGEGVAALTGD-IEQVPASVSA 133
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGI----IWLKCQAGTY 178
EL+A P T + ++++ +G + + C +GTY
Sbjct: 134 IKIDGKRAYARMREGEAVELKARPV---TVSRFDVLARRDVPGSGFVDVDVDVDCSSGTY 190
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
+R +G LGVG + LRR + G
Sbjct: 191 IRALARDLGAALGVGGHLTALRRTKVG 217
>gi|390454023|ref|ZP_10239551.1| tRNA pseudouridine synthase B [Paenibacillus peoriae KCTC 3763]
Length = 311
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 28/205 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA +R+L ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 13 GILPVLKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRVVEYMQER 72
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQ----GLLDKHGKPNENTPASYLA-- 140
KEY + +L A + V + S++ + + + L++ P Y A
Sbjct: 73 PKEYQATLRLGIATDTEDLTGTVTEESERPVEVTEEEVKAALERFVGTILQVPPMYSALK 132
Query: 141 -----ELEAAPNKKPTYMKSNLISSDVTLSTGI--------IWLK--CQAGTYVRTYCVH 185
E A K KS + TG I + C GTY+RT CV
Sbjct: 133 VNGKRLYELAREGKTVERKSREVDIYELEMTGFEQTGSYVDISFRALCSKGTYIRTLCVD 192
Query: 186 MGLVLGVGAQMIELRRNRS-GIQSE 209
+G LG + M++L R S GI +E
Sbjct: 193 IGRALGYPSTMVKLERTMSAGISAE 217
>gi|126698912|ref|YP_001087809.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|255306272|ref|ZP_05350443.1| tRNA pseudouridine synthase B [Clostridium difficile ATCC 43255]
gi|423082297|ref|ZP_17070889.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|423087689|ref|ZP_17076075.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|423090902|ref|ZP_17079188.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
gi|123067081|sp|Q18BH7.1|TRUB_CLOD6 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|115250349|emb|CAJ68171.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|357544003|gb|EHJ26009.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|357548623|gb|EHJ30483.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|357556017|gb|EHJ37639.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
Length = 301
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 35/213 (16%)
Query: 39 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYIS 98
KP+ +SH+VV+ +++IL +K GH+GTLDP SG L +CI +AT++ + + K YI
Sbjct: 9 KPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKDKSYIC 68
Query: 99 IFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTY--MKSN 156
L + + + + ++K+ +D NE+ ++ + P Y +K N
Sbjct: 69 ELTLGISTDTYDASGE---ILKK--VDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 157 ------LI----SSDVTLSTG-----------------IIWLKCQAGTYVRTYCVHMGLV 189
L+ S++TL T + +++C GTYVR+ C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
LG GA M L R SG + + D +T + +F
Sbjct: 184 LGCGAHMSFLNRTSSG-KFDLDNSITLEELELF 215
>gi|260881113|ref|ZP_05893304.1| tRNA pseudouridine synthase B [Mitsuokella multacida DSM 20544]
gi|260849570|gb|EEX69577.1| tRNA pseudouridine synthase B [Mitsuokella multacida DSM 20544]
Length = 298
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP SSH+V+ ++++L ++ GH+GTLDP +G L + + +A RL++ + A
Sbjct: 4 GFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLELA 63
Query: 93 GKEYISIFKLHSAVENVAKASK-----------KKMMIKQGLLDKHGKPNENTPASYLAE 141
K Y + A ++ + + I+ LL GK + PA +
Sbjct: 64 DKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSAIK 123
Query: 142 LEAA--------------PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+ P+++ T ++++ + ++C GTY+R+ C+ +G
Sbjct: 124 IGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLDIG 183
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
LG+ A M L R+R G + D L
Sbjct: 184 AALGLPATMSFLVRSRVGDFALADAL 209
>gi|300025000|ref|YP_003757611.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans ATCC
51888]
gi|299526821|gb|ADJ25290.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans ATCC
51888]
Length = 306
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ LDKP N +S + V ++R+ +K GHSGTLDP +G L + + AT+ V
Sbjct: 12 GWLVLDKPQNMTSTQAVGIVRRVFNAQKAGHSGTLDPLATGILPIALGEATKTVSFAVDG 71
Query: 93 GKEYISIFK---------LHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELE 143
K Y + A+ N + + I+ L HG+ + PA +++
Sbjct: 72 EKAYRFTVRWGAETETDDTEGAIANTSDQRPDRASIEALLPQFHGEIMQVPPAYSAIKVD 131
Query: 144 AAP-------------NKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
A N +P ++ S + +T + +C GTYVR MG +L
Sbjct: 132 GARAYDLARDGETVVLNARPVFIDSLQLVDMPDAATSVFEARCGKGTYVRALARDMGRLL 191
Query: 191 GVGAQMIELRRNRSG 205
G +I LRR + G
Sbjct: 192 GCYGHVIALRRTQVG 206
>gi|229820973|ref|YP_002882499.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
gi|229566886|gb|ACQ80737.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
Length = 307
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 37/213 (17%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +DK + +SH+VVA +R+L K GH+GTLDP +G L++ + RATRL+ A
Sbjct: 9 GLAVVDKQAEWTSHDVVARARRLLGTRKVGHAGTLDPAATGVLLLGVGRATRLLTYLVGA 68
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K YI+ +L + V ++ ++ G + G + A++L ++ P
Sbjct: 69 DKTYIATIRLGQS--TVTDDAEGEVTSAAGAAEVSGTAIRDGVATFLGDISQVPSAVSAI 126
Query: 147 --NKKPTYMKSNLISSDVTLST-----------GIIWLK---------------CQAGTY 178
+ + Y + DV L+ G++ + C +GTY
Sbjct: 127 KVDGRRAYARVR-AGEDVQLAARGVHVAVFDVLGVVPAQALDGTPVQDVRVRVVCSSGTY 185
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
+R +G +LGVG + LRR G S +D
Sbjct: 186 IRALARDLGDLLGVGGHLTALRRTHVGGFSLDD 218
>gi|163839415|ref|YP_001623820.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
gi|162952891|gb|ABY22406.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
Length = 212
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 15/198 (7%)
Query: 22 LQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
L++ I +++ +G V +DKP +SH+VVA ++R+ K GH+GTLDP +G L++ I++
Sbjct: 2 LRQHILKHVLSGLVIVDKPQGWTSHDVVAKMRRLAGTRKVGHAGTLDPMATGVLVIGINK 61
Query: 82 ATRLVKSQQSAGKEYISIFKL-HSAVENVAKASKKKMM--IKQGLLDKHGKPNE---NTP 135
AT+L+ K Y + +L S + + A+ ++ + + +L + +
Sbjct: 62 ATKLLTYIVGTSKTYDATIRLGQSTITDDAEGEIRRAVAALTGEILQVPSSVSAIKVDGE 121
Query: 136 ASYLAELEAAPNKKPTYMKSNLISSDV----TLSTGI----IWLKCQAGTYVRTYCVHMG 187
SY A A + + N++S DV + + G+ + + C +GTY+R +G
Sbjct: 122 RSY-ARARAGKDVQLAVRPVNILSFDVHRIQSTTDGLLDVEVTVSCSSGTYIRALARDLG 180
Query: 188 LVLGVGAQMIELRRNRSG 205
LGVG + LRR G
Sbjct: 181 TALGVGGHLTALRRTAVG 198
>gi|218290091|ref|ZP_03494253.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
gi|218239800|gb|EED06989.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
Length = 302
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VV ++R L + GH+GTLDP +G L++C+ R TRL++
Sbjct: 6 GVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQG 65
Query: 93 GKEY--ISIFKLHSAVEN-----VAKASKKKM---MIKQGLLDKHGKPNENTPASYLAEL 142
KEY +F + + ++ VA+A + ++Q L G+ + P +
Sbjct: 66 DKEYSGTVVFGVGTDTDDAEGTVVAQAPATGLDLAAVRQAALRLTGEIRQRPPQYSAVHI 125
Query: 143 E-------AAPNKKPTYMKSNLISSDVTL---------STGIIWLKCQAGTYVRTYCVHM 186
+ A K+ + + TL + ++C GTYVR C +
Sbjct: 126 DGRRAYDLARQGKQVELPERTVQVQAFTLDEFRHEGEVAVARFRVRCSKGTYVRALCRDL 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G +LGV A M LRR G ED +
Sbjct: 186 GALLGVPAHMRSLRRLAIGCARVEDAI 212
>gi|339640470|ref|ZP_08661914.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453739|gb|EGP66354.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
Length = 292
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVIGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P +K T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYVRVGQEVE-RPERKVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG+ + M +L R S S +D L
Sbjct: 182 VDLGAKLGLASHMSQLTRTSSAGMSLDDAL 211
>gi|304404296|ref|ZP_07385958.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
gi|304347274|gb|EFM13106.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
Length = 302
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++ I R ++ GH+GTLDP+ +G L +CI RATR+V+ Q
Sbjct: 3 GILAVWKPAGWTSHDVVAKVRGITRVKRIGHAGTLDPQVTGVLPLCIGRATRVVEYLQER 62
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTP------- 135
K Y ++ +L A VE V S + + L G+ ++ P
Sbjct: 63 PKAYEAVLQLGIATDTEDMTGTTVEEVDSVSVTREEVAAALAAFIGEIDQVPPMYSALKV 122
Query: 136 -ASYLAEL-------EAAPNKKPTYMKSNL-ISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
L EL E K Y L D ++C GTY+RT CV +
Sbjct: 123 DGKRLYELAREGVTVERKSRKVQIYQIRLLEFVQDERRPRIRFDVECSKGTYIRTLCVDI 182
Query: 187 GLVLGVGAQMIELRRNRSG 205
G L V A M EL R SG
Sbjct: 183 GKRLNVPATMAELTRTMSG 201
>gi|255524225|ref|ZP_05391184.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296185346|ref|ZP_06853756.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|255512050|gb|EET88331.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296050180|gb|EFG89604.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
Length = 291
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N++KP SS +VV +K I + +K GH+GTLDP+ SG L +CI AT+LV S
Sbjct: 3 GILNINKPLGMSSFDVVRKVKSIAKTKKVGHTGTLDPEASGVLPICIGNATKLVDYIMSD 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLD----------KHGKPN-ENTPASYLA- 140
K Y L + + K +IK +D K + N + P Y A
Sbjct: 63 YKIYKVELMLGITTDTYDREGK---VIKNSPVDLEVEEVKKVIKEFEGNIDQIPPMYSAL 119
Query: 141 ---------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
E+E P Y N+I D+ L I +KC GTY+R+ C
Sbjct: 120 KVNGQRLYSLARQGIEIERKPRSITIY-SINII--DIQLPKVIFEVKCSKGTYIRSLCYD 176
Query: 186 MGLVLGVGAQMIELRRNRSG---IQSEEDGLVTFRQEHMFEHIV 226
+G L G M L+R R+G I+S D L E++ E+++
Sbjct: 177 IGEKLKCGGTMWNLQRTRTGSFNIESSVD-LDKLNIENINEYLI 219
>gi|386842880|ref|YP_006247938.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103181|gb|AEY92065.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796172|gb|AGF66221.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 301
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGK----PNE------ 132
KEY+ +L + + A ASK + I G+ G P++
Sbjct: 70 EKEYLGTVRLGQNTLTDDAEGEITSSADASKVTRDAIDAGIAKLTGDIMQVPSKVSAIKI 129
Query: 133 NTPASYLAELEAAPNKKPT----------YMKSNLISSDVT-LSTGIIWLKCQAGTYVRT 181
+ SY E + P Y + ++ D T + ++ + C +GTY+R
Sbjct: 130 DGVRSYKRAREGEDFEIPARPVTISSFTVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRA 189
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 190 LARDLGADLGVGGHLTALRRTRVG 213
>gi|385999574|ref|YP_005917873.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
gi|344220621|gb|AEN01252.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
Length = 298
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGL---LDKHGKPNENTPASYLA--- 140
K Y + +L A V ++ K + + + +++ P+S A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 141 ---------------ELEAAPNKKPTYM------KSNLISSDVTLSTGIIWLKCQAGTYV 179
+LEA P + + + LI DV + C +GTY+
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFALLAARRRDQLIDIDV-------EIDCSSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVG 205
>gi|405980789|ref|ZP_11039118.1| tRNA pseudouridine synthase B [Actinomyces neuii BVS029A5]
gi|404392808|gb|EJZ87865.1| tRNA pseudouridine synthase B [Actinomyces neuii BVS029A5]
Length = 314
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 39/207 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+V +DKP+ +SH+VV+ ++R+ K GH+GTLDP +G L+V + T+L++ A
Sbjct: 15 GFVVIDKPAGCTSHDVVSAVRRLACTRKVGHAGTLDPDATGALVVAVGAGTKLLRYLTGA 74
Query: 93 GKEYIS--IFKLHSAVENVA------------------KASKKKMMIKQ-----GLLDKH 127
K+Y++ F + + E+ + AS+ + I Q +
Sbjct: 75 DKQYLARVRFGISTTTEDASGEVTQALGARLSAEQIENAASRLRGNIMQVPSAVSAIKVQ 134
Query: 128 GKPN-ENTPASYLAELEAAP--------NKKPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
GK + E LEA P +P +++ + +D++ I + C +GTY
Sbjct: 135 GKRSYELVREGKEVALEARPVTIDELELTSEPQQVRAQVPVTDIS-----IRVTCSSGTY 189
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
+R +G LG GA + LRR R G
Sbjct: 190 IRALARDLGEALGCGAHLTYLRRTRVG 216
>gi|402817506|ref|ZP_10867094.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
gi|402505028|gb|EJW15555.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
Length = 306
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP + +SH+VVA ++R++R ++ GH+GTLDPK G L +CI +ATR+V+ Q
Sbjct: 6 GVLPVWKPEDWTSHDVVAKVRRLIREKRIGHTGTLDPKVVGVLPLCIGKATRIVEYLQEM 65
Query: 93 GKEYISI--FKLHSAVENVAKASKKKM--------MIKQGLLDKHGKPNENTPASYLAEL 142
K+Y ++ F L + E+++ ++ MI++ + G + P ++
Sbjct: 66 PKQYEAVLRFGLSTDTEDLSGEVLERSDASHLTAEMIREAVHSFIGDIEQIPPMYSAVKV 125
Query: 143 EAA--------------PNKKPTYMKSNLISSDVTLSTGII--WLKCQAGTYVRTYCVHM 186
+ ++ T K +L+ + + I ++C GTY+RT CV +
Sbjct: 126 DGKRLYDLAREGKTVERKARQVTIHKIDLLDMQLGAAEPEIRFLVECSKGTYIRTLCVDI 185
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LGV + M +L R S
Sbjct: 186 GRKLGVPSTMAKLTRTVSA 204
>gi|15609930|ref|NP_217309.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|15842331|ref|NP_337368.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31793969|ref|NP_856462.1| tRNA pseudouridine synthase B [Mycobacterium bovis AF2122/97]
gi|121638673|ref|YP_978897.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662635|ref|YP_001284158.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148823981|ref|YP_001288735.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis F11]
gi|224991165|ref|YP_002645854.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798123|ref|YP_003031124.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 1435]
gi|254232889|ref|ZP_04926216.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|254365444|ref|ZP_04981489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|254551851|ref|ZP_05142298.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448451|ref|ZP_06438195.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289570972|ref|ZP_06451199.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289575491|ref|ZP_06455718.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289746596|ref|ZP_06505974.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289754899|ref|ZP_06514277.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289762967|ref|ZP_06522345.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|294994114|ref|ZP_06799805.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 210]
gi|297635404|ref|ZP_06953184.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|297732402|ref|ZP_06961520.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN R506]
gi|298526259|ref|ZP_07013668.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|306777074|ref|ZP_07415411.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|306780976|ref|ZP_07419313.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|306785604|ref|ZP_07423926.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|306790199|ref|ZP_07428521.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|306794283|ref|ZP_07432585.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|306798701|ref|ZP_07437003.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|306804556|ref|ZP_07441224.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|306807404|ref|ZP_07444072.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|306968855|ref|ZP_07481516.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|306973189|ref|ZP_07485850.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|307080898|ref|ZP_07490068.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|307085489|ref|ZP_07494602.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|313659734|ref|ZP_07816614.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN
V2475]
gi|339632804|ref|YP_004724446.1| tRNA pseudouridine synthase B TRUB [Mycobacterium africanum
GM041182]
gi|375295391|ref|YP_005099658.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|378772528|ref|YP_005172261.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|385992066|ref|YP_005910364.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|385995688|ref|YP_005913986.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|392387425|ref|YP_005309054.1| truB [Mycobacterium tuberculosis UT205]
gi|392431599|ref|YP_006472643.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 605]
gi|397674704|ref|YP_006516239.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|422813839|ref|ZP_16862211.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|424805132|ref|ZP_18230563.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|424948444|ref|ZP_18364140.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|449064865|ref|YP_007431948.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
gi|49065852|sp|P62189.1|TRUB_MYCBO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49065853|sp|P62190.1|TRUB_MYCTU RecName: Full=tRNA pseudouridine synthase B; AltName:
Full=MTB-TRUB; AltName: Full=tRNA pseudouridine(55)
synthase; Short=Psi55 synthase; AltName: Full=tRNA
pseudouridylate synthase; AltName: Full=tRNA-uridine
isomerase
gi|189036543|sp|A1KMD6.1|TRUB_MYCBP RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189036544|sp|A5U6E6.1|TRUB_MYCTA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|13882627|gb|AAK47182.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31619563|emb|CAD95001.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97]
gi|121494321|emb|CAL72799.1| Probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124601948|gb|EAY60958.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|134150957|gb|EBA43002.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506787|gb|ABQ74596.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148722508|gb|ABR07133.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis F11]
gi|224774280|dbj|BAH27086.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319626|gb|ACT24229.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
1435]
gi|289421409|gb|EFD18610.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289539922|gb|EFD44500.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289544726|gb|EFD48374.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289687124|gb|EFD54612.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289695486|gb|EFD62915.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289710473|gb|EFD74489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|298496053|gb|EFI31347.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|308214583|gb|EFO73982.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|308326229|gb|EFP15080.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|308329787|gb|EFP18638.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|308333392|gb|EFP22243.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|308337416|gb|EFP26267.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|308341081|gb|EFP29932.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|308346135|gb|EFP34986.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|308348886|gb|EFP37737.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|308353606|gb|EFP42457.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|308357452|gb|EFP46303.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|308361401|gb|EFP50252.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|308365013|gb|EFP53864.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|323718639|gb|EGB27803.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|326904408|gb|EGE51341.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|328457896|gb|AEB03319.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
4207]
gi|339295642|gb|AEJ47753.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|339299259|gb|AEJ51369.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|339332160|emb|CCC27868.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium
africanum GM041182]
gi|341602711|emb|CCC65387.1| probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|356594849|gb|AET20078.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|358232959|dbj|GAA46451.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|378545976|emb|CCE38254.1| truB [Mycobacterium tuberculosis UT205]
gi|379029106|dbj|BAL66839.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|392053008|gb|AFM48566.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
605]
gi|395139609|gb|AFN50768.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|440582271|emb|CCG12674.1| putative TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium tuberculosis 7199-99]
gi|444896331|emb|CCP45592.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449033373|gb|AGE68800.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
Length = 298
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGL---LDKHGKPNENTPASYLA--- 140
K Y + +L A V ++ K + + + +++ P+S A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 141 ---------------ELEAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYV 179
+LEA P + + + LI DV + C +GTY+
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDV-------EIDCSSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVG 205
>gi|383308548|ref|YP_005361359.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
gi|380722501|gb|AFE17610.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
Length = 301
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGL---LDKHGKPNENTPASYLA--- 140
K Y + +L A V ++ K + + + +++ P+S A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 141 ---------------ELEAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYV 179
+LEA P + + + LI DV + C +GTY+
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDV-------EIDCSSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVG 205
>gi|167968623|ref|ZP_02550900.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
Length = 298
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGL---LDKHGKPNENTPASYLA--- 140
K Y + +L A V ++ K + + + +++ P+S A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 141 ---------------ELEAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYV 179
+LEA P + + + LI DV + C +GTY+
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDV-------EIDCSSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVG 205
>gi|375291139|ref|YP_005125679.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 241]
gi|376245971|ref|YP_005136210.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC01]
gi|371580810|gb|AEX44477.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 241]
gi|372108601|gb|AEX74662.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC01]
Length = 300
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP +SH+VV+ I+RI +K GH+GTLDP +G L++ ++R T+ + +
Sbjct: 8 SGLVIVDKPEGMTSHDVVSKIRRIFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVA 67
Query: 92 AGKEYISIFKLHSAV-------ENVAKASKKKMM------IKQGLLDKHGKPNENTPASY 138
+ K Y + +L +A E +A AS ++ I + G + A
Sbjct: 68 STKSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVS 127
Query: 139 LAELEAA--------------PNKKPTYMKSNL--ISSDVTLSTGIIWLKCQAGTYVRTY 182
+++ P + T + ++ I D + + C +GTY+R+
Sbjct: 128 AIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSL 187
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR + G
Sbjct: 188 ARDLGEELGVGGHLTALRRTQVG 210
>gi|46015795|pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
gi|46015796|pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGL---LDKHGKPNENTPASYLA--- 140
K Y + +L A V ++ K + + + +++ P+S A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 141 ---------------ELEAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYV 179
+LEA P + + + LI DV + C +GTY+
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDV-------EIDCSSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R G
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVG 205
>gi|332670049|ref|YP_004453057.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
gi|332339087|gb|AEE45670.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
Length = 315
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 87/210 (41%), Gaps = 44/210 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VVA +R+ K GH+GTLDP +G L++ I RATRL+ A
Sbjct: 17 GLLVVDKPQGWTSHDVVARTRRLAATRKVGHAGTLDPMATGVLVLGIGRATRLLTYVVGA 76
Query: 93 GKEYISIFKLHSA---------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA--- 140
KEY + +L A V V AS + P P+S A
Sbjct: 77 DKEYTATVRLGVATTTDDAEGEVVAVRDASGVSDAGLAAAVAALTGPILQVPSSVSAIKV 136
Query: 141 ---------------ELEAAP----------NKKPTYMKSNLISSDVTLSTGIIWLKCQA 175
EL A P ++ + ++ DVT+ C +
Sbjct: 137 AGERAYARVRAGEQVELAARPVTVSRFDVHGRRRAVVDGTAVLDVDVTVV-------CSS 189
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTYVR +G LGVG + LRR R G
Sbjct: 190 GTYVRALARDVGAALGVGGHLTALRRTRVG 219
>gi|212373352|dbj|BAE96934.2| Cbf5 [Thermosphaera aggregans DSM 11486]
Length = 228
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 49 VAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVEN 108
VAW+K++ +K GH GTLDPK +G L V +D +T+++ + + KEY+ + + H VE
Sbjct: 1 VAWVKKLFNIDKAGHGGTLDPKVTGVLPVGLDNSTKVIGNVVHSVKEYVMVIQFHGDVE- 59
Query: 109 VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGI 168
K +K + + +P + + + K +
Sbjct: 60 ---IGKLVEALKYFTGEIYQRPPLRSSVKRVLRTRRIHEIELLDFKDRF---------AL 107
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+ C GTY+R +GL GVGA M ELRR R+G E++ LV +
Sbjct: 108 VRASCDPGTYMRKLAHDIGLYTGVGAHMRELRRTRTGPYREDETLVKLQD 157
>gi|350566724|ref|ZP_08935369.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
gi|348661911|gb|EGY78586.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
Length = 285
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 29/198 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VV ++R L +K GH+GTLDP +G L + I +AT+L ++
Sbjct: 3 GVLVIDKPKGVTSHDVVYMVRRKLGIKKVGHTGTLDPIATGVLPILIGKATKLSDRLTAS 62
Query: 93 GKEYISIFKL---HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE-------- 141
KEYI+ FK +++ + MI D K EN L E
Sbjct: 63 NKEYIAEFKFGIQTDSLDITGNVTHASAMIPSE--DSLRKELENFTGDILQEPPIYSAIK 120
Query: 142 ------LEAA--------PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E A P ++ T L+ D + + II++ C +GTYVR+ +G
Sbjct: 121 IKGKKLYEYARAGEEIEIPKRQCTIYSMKLL--DSSENRFIIYINCSSGTYVRSLIRDIG 178
Query: 188 LVLGVGAQMIELRRNRSG 205
L L A M ELRR +G
Sbjct: 179 LKLKSFATMTELRRVSTG 196
>gi|402300756|ref|ZP_10820214.1| tRNA pseudouridine 5S synthase [Bacillus alcalophilus ATCC 27647]
gi|401724113|gb|EJS97508.1| tRNA pseudouridine 5S synthase [Bacillus alcalophilus ATCC 27647]
Length = 308
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
+AG ++L KP+ +SH+ VA ++R+ + +K GH+GTLDP +G L +CI +AT++ +
Sbjct: 3 KAGVLSLYKPAGMTSHDCVAKLRRLFQTKKIGHTGTLDPAVTGVLPICIGKATKVAQYMS 62
Query: 91 SAGKEYISIFKLHSAV-----------ENVAKASKKKMMIKQGLLDKHGKPNENTPASYL 139
K Y + + A E S I + L G+ N+ TP Y
Sbjct: 63 DYAKAYEAEVTIGFATTTEDQTGETVEEKAVTNSISSQKIDEVLASFLGEINQ-TPPMYS 121
Query: 140 A---------------ELEAAPNKKPTYMKSNLI-----SSDVTLSTGIIWLKCQAGTYV 179
A E+ P++ T + N + + D +++KC GTYV
Sbjct: 122 AVKVKGRRLYDYARKGEVVDRPSRIVTIEEINRLGDVQWNQDKQTLCFRLFVKCSKGTYV 181
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225
RT V +G LG A M +L+R SG + ED L +F + E I
Sbjct: 182 RTLAVDIGKKLGFPAHMSKLQRVSSGPFTLEDCL-SFEEIEQMESI 226
>gi|381210029|ref|ZP_09917100.1| tRNA-pseudouridine 5S synthase [Lentibacillus sp. Grbi]
Length = 309
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 32/207 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V I+++ R +K GH+GTLDP+ G L +CI +AT++V
Sbjct: 15 GILPLWKPKGMTSHDCVLKIRKLFRLKKVGHTGTLDPEVEGVLPICIGQATKIVPFLTDT 74
Query: 93 GKEYISIFKL------------------------HSAVENVAKASKKKMMIKQGLLDKHG 128
K YI+ KL A+ENV + + + + +
Sbjct: 75 KKNYIAAIKLGVSTETEDRQGHVIETREILHPPSQQAIENVLQLF-RGYITQIPPMYSAV 133
Query: 129 KPNENTPASYLAELEAA--PNKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTYVRTYCV 184
K N Y E E P + K + D ++ W++ C GTY+RT CV
Sbjct: 134 KVNGKKLYEYARENEYVERPERSVFIYKLEQLKDD---NSDRFWVQVECSKGTYIRTLCV 190
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEED 211
+G LG A M EL R +G S+ED
Sbjct: 191 DIGNRLGFPAHMSELYRTGTGAISKED 217
>gi|153004011|ref|YP_001378336.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
gi|152027584|gb|ABS25352.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
Length = 315
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG + +DKP+ P+S +VV ++RILR + GH+GTLDP +G L +C+ A +L +
Sbjct: 4 AGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLSD 63
Query: 92 AGKEYISIFKLHSAVEN-------VAKASKKKMMIKQ--GLLDKHGKPNENTPASYLA-- 140
A K Y + +A + V + ++ ++ +L + P Y A
Sbjct: 64 ADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAVR 123
Query: 141 --------------ELEAAPNK------------KPTYMKSNLISSDVTLSTGIIWLKCQ 174
+E AP + + + ++ V L+ ++C
Sbjct: 124 VGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLAR--FTVRCG 181
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNR-SGIQSEE 210
GTYVRT +G LGV A + LRR SG ++EE
Sbjct: 182 KGTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEE 218
>gi|335040859|ref|ZP_08533980.1| tRNA pseudouridine synthase B [Caldalkalibacillus thermarum TA2.A1]
gi|334179294|gb|EGL81938.1| tRNA pseudouridine synthase B [Caldalkalibacillus thermarum TA2.A1]
Length = 300
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L+KP +SH+ V ++++ + +K GH+GTLDP+ +G L +C+ RAT++ +
Sbjct: 6 GILVLNKPKGMTSHDCVLAVRKLAKTKKVGHTGTLDPEVTGVLPICLGRATKIAQFLTEK 65
Query: 93 GKEYISIFKLHSAV-----------ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
KEYI+ KL A E + + + L G+ + TP Y A
Sbjct: 66 EKEYIAEVKLGYATTTEDHTGDVIEEKPVDHPPTEQAVLEALSQFMGE-IKQTPPMYSAV 124
Query: 141 ---------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLK--CQAGTYVRTYC 183
E+E P+++ + L+ D L I K C GTYVRT
Sbjct: 125 KVKGKRLYEWAREGIEIE-RPSRRVVIHRLELVRYDPVLPYPTITFKVLCSKGTYVRTLG 183
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
V +G LG A + L R RSG
Sbjct: 184 VDIGRTLGFPAHLSSLVRTRSG 205
>gi|221231911|ref|YP_002511063.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ATCC
700669]
gi|415698798|ref|ZP_11457297.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 459-5]
gi|415749576|ref|ZP_11477520.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV35]
gi|415752263|ref|ZP_11479374.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV36]
gi|418123464|ref|ZP_12760397.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44378]
gi|418128053|ref|ZP_12764948.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP170]
gi|418178227|ref|ZP_12814811.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41565]
gi|419473253|ref|ZP_14013104.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13430]
gi|220674371|emb|CAR68920.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ATCC
700669]
gi|353796810|gb|EHD77148.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44378]
gi|353799484|gb|EHD79802.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP170]
gi|353845001|gb|EHE25044.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41565]
gi|379552760|gb|EHZ17849.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13430]
gi|381309959|gb|EIC50792.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV36]
gi|381316670|gb|EIC57415.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 459-5]
gi|381317870|gb|EIC58595.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV35]
Length = 292
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 33/209 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEY-------ISIFKLHSAVENVAK----ASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
GK Y S ++ E VAK +S + ++ + + G P P Y A
Sbjct: 63 GKIYEGEIILGYSTTTEDASGEVVAKTPVLSSLDEKLVDEAIASLTG-PITQIPPMYSAV 121
Query: 141 ---------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 122 KVNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 181 SVDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|289428642|ref|ZP_06430325.1| tRNA pseudouridine synthase B [Propionibacterium acnes J165]
gi|354607754|ref|ZP_09025722.1| tRNA pseudouridine synthase B [Propionibacterium sp. 5_U_42AFAA]
gi|386024449|ref|YP_005942754.1| tRNA pseudouridine synthase B [Propionibacterium acnes 266]
gi|407935900|ref|YP_006851542.1| tRNA pseudouridine synthase B [Propionibacterium acnes C1]
gi|422385570|ref|ZP_16465702.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA3]
gi|422430612|ref|ZP_16507492.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA2]
gi|422449643|ref|ZP_16526367.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA3]
gi|422479986|ref|ZP_16556390.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA1]
gi|422481351|ref|ZP_16557751.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA1]
gi|422487422|ref|ZP_16563754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA2]
gi|422491389|ref|ZP_16567703.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL020PA1]
gi|422497073|ref|ZP_16573350.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA3]
gi|422503273|ref|ZP_16579514.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA2]
gi|422505452|ref|ZP_16581682.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA2]
gi|422506956|ref|ZP_16583174.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA2]
gi|422512869|ref|ZP_16588996.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA2]
gi|422533718|ref|ZP_16609649.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA1]
gi|422551157|ref|ZP_16626952.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA3]
gi|422555517|ref|ZP_16631285.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA2]
gi|422566796|ref|ZP_16642424.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA2]
gi|289158040|gb|EFD06260.1| tRNA pseudouridine synthase B [Propionibacterium acnes J165]
gi|313807930|gb|EFS46411.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA2]
gi|313819716|gb|EFS57430.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA2]
gi|313822178|gb|EFS59892.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA1]
gi|313823588|gb|EFS61302.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA2]
gi|313825912|gb|EFS63626.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA1]
gi|314924667|gb|EFS88498.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA3]
gi|314962064|gb|EFT06165.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA2]
gi|314978841|gb|EFT22935.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA2]
gi|314986501|gb|EFT30593.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA2]
gi|314990859|gb|EFT34950.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA3]
gi|315083474|gb|EFT55450.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA2]
gi|315087160|gb|EFT59136.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA3]
gi|315089331|gb|EFT61307.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA1]
gi|327329751|gb|EGE71507.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA3]
gi|327446437|gb|EGE93091.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA2]
gi|328752192|gb|EGF65808.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL020PA1]
gi|332675907|gb|AEE72723.1| tRNA pseudouridine synthase B [Propionibacterium acnes 266]
gi|353556300|gb|EHC25671.1| tRNA pseudouridine synthase B [Propionibacterium sp. 5_U_42AFAA]
gi|407904481|gb|AFU41311.1| tRNA pseudouridine synthase B [Propionibacterium acnes C1]
Length = 295
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 28 EYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVK 87
+ +++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 2 DTLQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLG 61
Query: 88 SQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP- 146
K+Y + +L V V ++ + + + E++ P
Sbjct: 62 HLSLHDKDYTATVRL--GVGTVTDDAEGDVTVTTDASAIDDRAIHAAMVRQTGEIQQVPA 119
Query: 147 -------NKKPTYMKSNLISSDVTLSTGIIWLK---------------------CQAGTY 178
N + Y K DV L + + C +GTY
Sbjct: 120 AVSAIKVNGRRAYAKVRA-GEDVVLRPRAVTVSRFEAIAIRRHGQVIDVDVEATCSSGTY 178
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
VR +G LGVG + LRR R G
Sbjct: 179 VRALARDVGADLGVGGHLTALRRTRVG 205
>gi|289768758|ref|ZP_06528136.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
gi|289698957|gb|EFD66386.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
Length = 301
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGKPNENTPASYLA-- 140
KEY+ +L + ASK + I G+ + G + P+ A
Sbjct: 70 EKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTREAIDAGVAELSGDIMQ-VPSKVSAIK 128
Query: 141 ----------------ELEAAP---NKKPTYMKSNLISSDVT-LSTGIIWLKCQAGTYVR 180
E+ A P + Y + ++ D T + ++ + C +GTY+R
Sbjct: 129 IKGVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVVSVTCSSGTYIR 188
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 189 ALARDLGAGLGVGGHLTALRRTRVG 213
>gi|169630198|ref|YP_001703847.1| tRNA pseudouridine synthase B [Mycobacterium abscessus ATCC 19977]
gi|254764886|sp|B1MD72.1|TRUB_MYCA9 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|169242165|emb|CAM63193.1| tRNA pseudouridine synthase B (TruB) [Mycobacterium abscessus]
Length = 298
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG V +DKP+ +SH+VV+ +RI K GH+GTLDP +G L++ I+RAT+++
Sbjct: 7 RAGLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLT 66
Query: 91 SAGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + + + ++ ++ + ++ I+ + G + P+S A
Sbjct: 67 LTTKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQ-VPSSVSA 125
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + + + S L + + C +GTY+R
Sbjct: 126 IKVDGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRAL 185
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
G LGVG + LRR R G
Sbjct: 186 ARDAGAALGVGGHLTALRRTRVG 208
>gi|392394565|ref|YP_006431167.1| tRNA pseudouridine synthase B [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525643|gb|AFM01374.1| tRNA pseudouridine synthase B [Desulfitobacterium dehalogenans ATCC
51507]
Length = 294
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KPS +S +VV ++RIL K GH+GTLDP+ +G L +C+ +ATRL + +
Sbjct: 3 GVINVLKPSGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 62
Query: 93 GKEYIS--IFKLHSAVENVA-----------KASKKKMMIKQGLLDKHGKPNENTPASYL 139
GK Y F + + ++ + A + +I Q L P + +
Sbjct: 63 GKSYRCEMTFGIITDTQDASGEILNKAPAHVSAEDFQHIIPQYLGSIRQIPPMFSAVKHQ 122
Query: 140 AE--LEAAPNKKPTYMKSNLISSD---------VTLSTGIIWLKCQAGTYVRTYCVHMGL 188
+ E A KS I D I + C GTYVRT C MG
Sbjct: 123 GKRLYELARQGLEVERKSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYVRTLCHDMGQ 182
Query: 189 VLGVGAQMIELRRNRSG 205
LG GA M +L R RSG
Sbjct: 183 TLGCGAHMSDLVRLRSG 199
>gi|226501514|ref|NP_001150630.1| pseudouridylate synthase/ transporter [Zea mays]
gi|195640714|gb|ACG39825.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 490
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK 94
V +DKP +S V ++R+++ +K GH+GTLDP +G LIVC+ +AT++V S Q K
Sbjct: 274 VLIDKPKGWTSFTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVK 333
Query: 95 EYISIFKLHSAV--------------------ENVAKASKKKM-----------MIKQGL 123
Y +F+L A EN+ KA+ M IK G
Sbjct: 334 GYSGVFRLGEATSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVGG 393
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ K + +E +P + Y + ++ S I + C GTY+R+ C
Sbjct: 394 EKMYDKARKG------ETVELSPRRISIY-QFDIERSLEDRQNLIFRVTCSKGTYIRSLC 446
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDG 212
+G LG A + LRR+ G S D
Sbjct: 447 ADLGKALGSCAHLTALRRDSIGEYSVNDA 475
>gi|46907554|ref|YP_013943.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 4b
str. F2365]
gi|54036498|sp|Q71ZZ4.1|TRUB_LISMF RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|46880822|gb|AAT04120.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 4b
str. F2365]
Length = 304
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ ++ + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLNGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|418969256|ref|ZP_13520393.1| tRNA pseudouridine synthase B [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383352294|gb|EID30011.1| tRNA pseudouridine synthase B [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 292
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 33/209 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL-------HSAVENVAKASK----KKMMIKQGLLDKHGKPNENTPASYLA- 140
GK Y L ++ E VA+ S + ++ + + G P P Y A
Sbjct: 63 GKIYEGEITLGYSTTTEDASGEVVAETSVLSPLDEKLVDEAIASLTG-PITQIPPMYSAV 121
Query: 141 ---------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 122 KVNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M +L R + +G+Q E+
Sbjct: 181 SVDLGEKLGYAAHMSQLTRTSAAGLQLED 209
>gi|340756957|ref|ZP_08693561.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
gi|251834223|gb|EES62786.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
Length = 286
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N++KPS +S +VV ++RIL K GH+GTLDP G L+VCI +AT+LV+ +
Sbjct: 3 GIINVNKPSGITSFDVVRKLRRILHERKIGHTGTLDPLAEGVLVVCIGKATKLVQDIEGY 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K Y + F+L + ++ +++ K+ + + EN ++ E+E P
Sbjct: 63 EKTYTAGFELGYRTDTY--DTEGQIIEKREINNVTLGELENVLKKFIGEIEQIPPMYSAL 120
Query: 147 --NKKPTY----------MKSNLIS---SDVTLSTGI---IWLKCQAGTYVRTYCVHMGL 188
+ K Y K+ LI D+ G+ I GTY+R+ MG
Sbjct: 121 KVDGKKLYELARQGIEVERKARLIEIKFIDIVEFDGVKGKIRCGVSKGTYIRSLIDDMGK 180
Query: 189 VLGVGAQMIELRRNRSGIQSEED 211
LG A M L R + G + ED
Sbjct: 181 ALGTLATMTSLVREKVGSSNIED 203
>gi|254992776|ref|ZP_05274966.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J2-064]
gi|405755457|ref|YP_006678921.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2540]
gi|404224657|emb|CBY76019.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2540]
Length = 304
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|169827171|ref|YP_001697329.1| tRNA pseudouridine synthase B [Lysinibacillus sphaericus C3-41]
gi|168991659|gb|ACA39199.1| tRNA pseudouridine synthase B [Lysinibacillus sphaericus C3-41]
Length = 303
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 100/230 (43%), Gaps = 32/230 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++ILR +K GH+GTLDP G L +CI +ATR+ + A
Sbjct: 3 GILPLWKERGMTSHDCVFKLRKILRTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 62
Query: 93 GKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLDKHGKPN---ENTPASYLA-- 140
GK Y +I + E VA+ K ++ L + E TP + A
Sbjct: 63 GKTYEAIISIGRTTTTEDAEGETVAQDQTIKKFSREQLQEVLASLTGIIEQTPPMFSAVK 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
E P ++ T L+ + + T + + C GTY+RT
Sbjct: 123 VNGKRLYEYARKGETVERPTRQVTIYALELLDDNESYEGQEITFPVRIACSKGTYIRTLA 182
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ--EHMFEHIVSTWVL 231
V +G LG A M EL R SG + D T Q E M E V+T +L
Sbjct: 183 VQIGEELGYPAHMKELVRTASGTFT-RDNCFTLAQVAELMDEEQVATCIL 231
>gi|68536214|ref|YP_250919.1| tRNA pseudouridine synthase B [Corynebacterium jeikeium K411]
gi|91208074|sp|Q4JV56.1|TRUB_CORJK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|68263813|emb|CAI37301.1| tRNA pseudouridine synthase B [Corynebacterium jeikeium K411]
Length = 308
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 23 QRTIQEYI-RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR 81
QR+ + + R+G V +DKPS P+SH++VA ++RI+ + GHSGTLDP +G L+V ++R
Sbjct: 3 QRSARSVLSRSGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVER 62
Query: 82 ATRLVKSQQSAGKEYISIFKLHSAVEN-------VAKASKKKM------MIKQGLLDKHG 128
T+ + + K Y + +L A ++ AS + + +++ + G
Sbjct: 63 GTKFLAHVVTHDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRG 122
Query: 129 KPNENTPASYLAELEAA--------------PNKKPTYMKSNLISSDVTLSTGIIWLK-- 172
+ + +++ P + T ++ V +T I +
Sbjct: 123 DIMQRPTSVSSIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARIS 182
Query: 173 --CQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
C +GTY+R +G LGVG + +LRR G
Sbjct: 183 VHCSSGTYIRAIARDVGEALGVGGHLTQLRRTSVG 217
>gi|419716874|ref|ZP_14244269.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
gi|382940435|gb|EIC64759.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
Length = 298
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG V +DKP+ +SH+VV+ +RI K GH+GTLDP +G L++ I+RAT+++
Sbjct: 7 RAGLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLT 66
Query: 91 SAGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + + + ++ ++ + ++ I+ + G + P+S A
Sbjct: 67 LTTKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQ-VPSSVSA 125
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + + + S L + + C +GTY+R
Sbjct: 126 IKVDGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEVDCSSGTYIRAL 185
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
G LGVG + LRR R G
Sbjct: 186 ARDAGAALGVGGHLTALRRTRVG 208
>gi|294815435|ref|ZP_06774078.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
gi|326443787|ref|ZP_08218521.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
gi|294328034|gb|EFG09677.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
Length = 299
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 31/204 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGK----PNE------ 132
KEY+ +L + A AS + + G+ G P++
Sbjct: 70 EKEYLGTIRLGQTTVTDDAEGEITASADASAVTRQAVDTGVAALTGAIMQVPSKVSAIKI 129
Query: 133 NTPASYLA-------ELEAAPNKKPTY----MKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
+ SY E+ A P ++ M+ + + ++ + C +GTY+R
Sbjct: 130 DGKRSYARVRGGEEFEIPARPVTVSSFRVYDMREDRAEDGTPVMDLVVSVVCSSGTYIRA 189
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 190 LARDLGAALGVGGHLTALRRTRVG 213
>gi|47094121|ref|ZP_00231844.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. 4b
H7858]
gi|254824613|ref|ZP_05229614.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J1-194]
gi|255520238|ref|ZP_05387475.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J1-175]
gi|405752545|ref|YP_006676010.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2378]
gi|417313781|ref|ZP_12100488.1| tRNA pseudouridine synthase B [Listeria monocytogenes J1816]
gi|424714202|ref|YP_007014917.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 4b
str. LL195]
gi|47017506|gb|EAL08316.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. 4b
H7858]
gi|293593851|gb|EFG01612.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J1-194]
gi|328468611|gb|EGF39611.1| tRNA pseudouridine synthase B [Listeria monocytogenes J1816]
gi|404221745|emb|CBY73108.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2378]
gi|424013386|emb|CCO63926.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 4b
str. LL195]
Length = 304
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|226223929|ref|YP_002758036.1| tRNA pseudouridine 55 synthase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254852622|ref|ZP_05241970.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL R2-503]
gi|254932357|ref|ZP_05265716.1| tRNA pseudouridine synthase B [Listeria monocytogenes HPB2262]
gi|300765432|ref|ZP_07075414.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL N1-017]
gi|386732066|ref|YP_006205562.1| tRNA pseudouridine synthase B [Listeria monocytogenes 07PF0776]
gi|404280882|ref|YP_006681780.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2755]
gi|404286747|ref|YP_006693333.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|405749670|ref|YP_006673136.1| tRNA pseudouridine synthase B [Listeria monocytogenes ATCC 19117]
gi|406704099|ref|YP_006754453.1| tRNA pseudouridine synthase B [Listeria monocytogenes L312]
gi|424823091|ref|ZP_18248104.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. Scott A]
gi|225876391|emb|CAS05100.1| Putative tRNA pseudouridine 55 synthase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605937|gb|EEW18545.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL R2-503]
gi|293583913|gb|EFF95945.1| tRNA pseudouridine synthase B [Listeria monocytogenes HPB2262]
gi|300513869|gb|EFK40934.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL N1-017]
gi|332311771|gb|EGJ24866.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. Scott A]
gi|384390824|gb|AFH79894.1| tRNA pseudouridine synthase B [Listeria monocytogenes 07PF0776]
gi|404218870|emb|CBY70234.1| tRNA pseudouridine synthase B [Listeria monocytogenes ATCC 19117]
gi|404227517|emb|CBY48922.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2755]
gi|404245676|emb|CBY03901.1| tRNA pseudouridine synthase B [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|406361129|emb|CBY67402.1| tRNA pseudouridine synthase B [Listeria monocytogenes L312]
Length = 304
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|134299801|ref|YP_001113297.1| tRNA pseudouridine synthase B [Desulfotomaculum reducens MI-1]
gi|134052501|gb|ABO50472.1| tRNA pseudouridine synthase B [Desulfotomaculum reducens MI-1]
Length = 310
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +SH+VV +++R+ +K GH+GTLDP SG L VC+ +ATRL +
Sbjct: 3 GVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVTDG 62
Query: 93 GKEYISIFKL------HSAVENVA---KASKKKMMIKQGLLDKHGKPNENTP-------- 135
K Y + L A NV AS K+ L K + TP
Sbjct: 63 DKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAIKV 122
Query: 136 -ASYLAELE------AAPNKKPTYMKSNLISS---DVTLSTGIIWLKCQAGTYVRTYCVH 185
L ELE P + T + N++ S + + C GTYVRT C
Sbjct: 123 KGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLCSD 182
Query: 186 MGLVLGVGAQMIELRRNR 203
+G LG GA M L R+R
Sbjct: 183 IGKELGCGAYMSFLLRSR 200
>gi|413942368|gb|AFW75017.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 497
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK 94
V +DKP +S V ++R+++ +K GH+GTLDP +G LIVC+ +AT++V S Q K
Sbjct: 281 VLIDKPKGWTSFTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVK 340
Query: 95 EYISIFKLHSAV--------------------ENVAKASKKKM-----------MIKQGL 123
Y +F+L A EN+ KA+ M IK G
Sbjct: 341 GYSGVFRLGEATSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVGG 400
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ K A +E +P + Y + ++ S I + C GTY+R+ C
Sbjct: 401 EKMYDK------ARKGETVELSPRRISIY-QFDIERSLEDRQNLIFRVTCSKGTYIRSLC 453
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDG 212
+G LG A + LRR+ G S D
Sbjct: 454 ADLGKALGSCAHLTALRRDSIGEYSVNDA 482
>gi|296087588|emb|CBI34844.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK 94
V ++KP +S V ++R+++ +K GH+GTLDP +G LIVC+ +AT+LV+S Q K
Sbjct: 286 VLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMVK 345
Query: 95 EYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN-ENTPASYLAELEAAP------- 146
Y IF+L A S +I++ + N + T AS+ E+ P
Sbjct: 346 GYSGIFRLGEATSTWDADSP---VIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIK 402
Query: 147 -NKKPTYMKS-------------NLISSDVTLSTG-----IIWLKCQAGTYVRTYCVHMG 187
+ Y K+ ++ D+ S + + C GTY+R+ C G
Sbjct: 403 VGGEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFG 462
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDG 212
LG A + LRR+ G S +D
Sbjct: 463 KALGSCAHLAALRRDSIGPYSADDA 487
>gi|422854032|ref|ZP_16900696.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
gi|325696837|gb|EGD38725.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
Length = 292
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIHQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|258511418|ref|YP_003184852.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478144|gb|ACV58463.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 302
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VV ++R L + GH+GTLDP +G L++C+ R TRL++
Sbjct: 6 GVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQG 65
Query: 93 GKEYIS--IFKLHSAVEN-----VAKASKKKM---MIKQGLLDKHGKPNENTPASYLAEL 142
K+Y +F + + ++ VA+AS + ++Q L G+ + P +
Sbjct: 66 DKDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYSAVHI 125
Query: 143 E-------AAPNKKPTYMKSNLISSDVT---------LSTGIIWLKCQAGTYVRTYCVHM 186
+ A KK + + T L+ ++C GTYVR C +
Sbjct: 126 DGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRALCRDL 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G ++G+ A M LRR G ED +
Sbjct: 186 GALVGLPAHMRSLRRLAIGSARVEDAI 212
>gi|424788009|ref|ZP_18214771.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
gi|422113118|gb|EKU16867.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
Length = 292
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYVRAGQEVE-RPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|154497688|ref|ZP_02036066.1| hypothetical protein BACCAP_01664 [Bacteroides capillosus ATCC
29799]
gi|150273186|gb|EDN00331.1| tRNA pseudouridine synthase B [Pseudoflavonifractor capillosus ATCC
29799]
Length = 289
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP+ +S +V A I+ +L + GH+GTLDP +G L V + RATR V+
Sbjct: 4 GIIVIDKPAGWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFAAEG 63
Query: 93 GKEYISIFKLHSAVENVAKAS-----KKKMMIKQGLLDKHGKPNEN----TPASYLA--- 140
GKEY++ +L V N S +K + + + L+ P P Y A
Sbjct: 64 GKEYVAGLRL-GVVTNTQDTSGTVLEEKPVSVDRAALEAALAPFRGDILQIPPMYSAIKR 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E+E P +P + + + ++ ++C GTYVRT C +G
Sbjct: 123 DGKKLYELARKGQEVEREP--RPVTIYGLEVVDQTGPADYLLRVQCSKGTYVRTLCHDIG 180
Query: 188 LVLGVGAQMIELRRNRS 204
LG G M LRR +
Sbjct: 181 QALGCGGCMYSLRRTEA 197
>gi|456388492|gb|EMF53932.1| truB protein [Streptomyces bottropensis ATCC 25435]
Length = 304
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 33/205 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 13 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 72
Query: 93 GKEYISIFKL-HSAVENVAK--------ASK-KKMMIKQGLLDKHGKPNENTPASYLA-- 140
KEY+ +L + V + A+ ASK + + G+ + G+ + P+ A
Sbjct: 73 EKEYLGTVRLGQTTVTDDAEGEITASVDASKVTREAVDAGVAELTGRIMQ-VPSKVSAIK 131
Query: 141 ----------------ELEAAP---NKKPTYMKSNLISSDVT-LSTGIIWLKCQAGTYVR 180
E+ A P + Y + ++ D T + ++ + C +GTY+R
Sbjct: 132 IDGVRSYKRARDGEDFEIPARPVTVSSFAVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIR 191
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 192 ALARDLGAGLGVGGHLTALRRTRVG 216
>gi|418472215|ref|ZP_13041976.1| tRNA pseudouridine synthase B [Streptomyces coelicoflavus ZG0656]
gi|371547173|gb|EHN75572.1| tRNA pseudouridine synthase B [Streptomyces coelicoflavus ZG0656]
Length = 301
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGKPNENTPASYLA-- 140
KEY+ +L + ASK + I G+ + G + P+ A
Sbjct: 70 EKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTREAIDAGVAELSGAIMQ-VPSKVSAIK 128
Query: 141 ----------------ELEAAP---NKKPTYMKSNLISSDVT-LSTGIIWLKCQAGTYVR 180
E+ A P + Y + ++ D T + ++ + C +GTY+R
Sbjct: 129 IKGVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVVSVTCSSGTYIR 188
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 189 ALARDLGAGLGVGGHLTALRRTRVG 213
>gi|291436932|ref|ZP_06576322.1| tRNA pseudouridine synthase [Streptomyces ghanaensis ATCC 14672]
gi|291339827|gb|EFE66783.1| tRNA pseudouridine synthase [Streptomyces ghanaensis ATCC 14672]
Length = 301
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGK----PNE------ 132
KEY+ +L + + AS+ + I G+ + G P+
Sbjct: 70 EKEYVGTVRLGQNTLTDDAEGEITSSTDASRVTREAIDAGVAELTGDIMQVPSRVSAIKI 129
Query: 133 NTPASYLAELEAAPNKKPT----------YMKSNLISSDVTLSTG-IIWLKCQAGTYVRT 181
N SY E P Y ++ D T ++ + C +GTY+R
Sbjct: 130 NGVRSYKRAREGEEFDIPARPVTVSSFSVYDVREAVADDGTAVLDLVVSVVCSSGTYIRA 189
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 190 LARDLGAGLGVGGHLTALRRTRVG 213
>gi|325003063|ref|ZP_08124175.1| tRNA pseudouridine synthase B [Pseudonocardia sp. P1]
Length = 297
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DK P+SH+VV ++RI+ K GH+GTLDP +G L+V I+RAT+L+
Sbjct: 10 GLVVVDKDRGPTSHDVVGKLRRIMGTRKVGHAGTLDPMATGVLVVGIERATKLLGHLSLD 69
Query: 93 GKEYISIFKLHSAVEN--------------VAKAS--KKKMMIKQGLLDKHGKPNENTPA 136
K Y + +L A + VA + + M + G + E P+
Sbjct: 70 TKAYTATVRLGQATDTDDAEGTPVGDPVAVVAGEAEVRAAMAVLTGDI-------EQVPS 122
Query: 137 SYLA---------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWL----KCQAGT 177
+ A E P + T +L D+ G + L +C +GT
Sbjct: 123 AVSAVKIDGKRAYQRVRDGETVEIPARPVTVSAFDL--RDLRRDGGFVDLDVVVECTSGT 180
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSG 205
YVR +G+ LG G + LRR R G
Sbjct: 181 YVRALARDLGVALGAGGHLTALRRTRVG 208
>gi|225452300|ref|XP_002272379.1| PREDICTED: uncharacterized protein LOC100259460 [Vitis vinifera]
Length = 520
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 35 VNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGK 94
V ++KP +S V ++R+++ +K GH+GTLDP +G LIVC+ +AT+LV+S Q K
Sbjct: 304 VLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMVK 363
Query: 95 EYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPN-ENTPASYLAELEAAP------- 146
Y IF+L A S +I++ + N + T AS+ E+ P
Sbjct: 364 GYSGIFRLGEATSTWDADSP---VIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIK 420
Query: 147 -NKKPTYMKS-------------NLISSDVTLSTG-----IIWLKCQAGTYVRTYCVHMG 187
+ Y K+ ++ D+ S + + C GTY+R+ C G
Sbjct: 421 VGGEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFG 480
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDG 212
LG A + LRR+ G S +D
Sbjct: 481 KALGSCAHLAALRRDSIGPYSADDA 505
>gi|315282184|ref|ZP_07870647.1| tRNA pseudouridine synthase B [Listeria marthii FSL S4-120]
gi|313614170|gb|EFR87851.1| tRNA pseudouridine synthase B [Listeria marthii FSL S4-120]
Length = 305
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 4 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 63
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L+ GK + P
Sbjct: 64 GKVYVAEITLGKST-TTEDATGETVMTKELAEISAAELQAALVKLTGKITQIPPMFSAVK 122
Query: 136 ---------ASYLAELEAAPNKKPTYMKSNLISS---DVTLSTGIIWLKCQAGTYVRTYC 183
A E+E + Y + L + T T + + C GTY+RT
Sbjct: 123 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGDKALNATNPTFQLEIACGKGTYIRTLA 182
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFE 223
V +G +LG A M +L R RSG +ED L + M +
Sbjct: 183 VMIGELLGYPAHMSKLERTRSGFFQKEDCLTLAEIDEMMQ 222
>gi|221632777|ref|YP_002521999.1| tRNA pseudouridine synthase B [Thermomicrobium roseum DSM 5159]
gi|221157237|gb|ACM06364.1| tRNA pseudouridine synthase B [Thermomicrobium roseum DSM 5159]
Length = 302
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VV W++ LR + GH GTLDP G L++ + ATRLV+ A
Sbjct: 3 GILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAADA 62
Query: 93 GKEYISIFKLHSA-----VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP- 146
K Y++ L + +E A+ + + L D ++ A +L E E P
Sbjct: 63 DKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDV-----QSALAEFLGEYEQQPP 117
Query: 147 -----------------NKKPTYMKSNLISSD------VTLSTGIIWLKCQAGTYVRTYC 183
+P +K ++ + + I+ L C G YVR++
Sbjct: 118 IYSALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFA 177
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+G LG GA + L R R G
Sbjct: 178 RDLGTRLGTGAYLHGLVRTRVG 199
>gi|395774938|ref|ZP_10455453.1| tRNA pseudouridine synthase B [Streptomyces acidiscabies 84-104]
Length = 301
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 43/210 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL------------------HSAV------ENVAKASKKKMMIKQGL----L 124
KEY+ +L SAV VAK + M + + +
Sbjct: 70 EKEYLGTVRLGQTTVTDDAEGEITASADASAVTREQVDAGVAKLTGDIMQVPSKVSAIKI 129
Query: 125 D-----KHGKPNENTPASYLAELEAAPNKKPTY----MKSNLISSDVTLSTGIIWLKCQA 175
D K + E+ E+ A P K ++ +++ + + ++ + C +
Sbjct: 130 DGVRSYKRARDGEDF------EIPARPVKISSFQVYDVRAAVAEDGTPVLDLVVSVVCSS 183
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTY+R +G LGVG + LRR R G
Sbjct: 184 GTYIRALARDLGTDLGVGGHLTALRRTRVG 213
>gi|290893561|ref|ZP_06556544.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J2-071]
gi|386053581|ref|YP_005971139.1| tRNA pseudouridine synthase B [Listeria monocytogenes Finland 1998]
gi|404407765|ref|YP_006690480.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2376]
gi|290556906|gb|EFD90437.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL J2-071]
gi|346646232|gb|AEO38857.1| tRNA pseudouridine synthase B [Listeria monocytogenes Finland 1998]
gi|404241914|emb|CBY63314.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2376]
Length = 304
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMVGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|430809581|ref|ZP_19436696.1| tRNA pseudouridine synthase B [Cupriavidus sp. HMR-1]
gi|429497942|gb|EKZ96459.1| tRNA pseudouridine synthase B [Cupriavidus sp. HMR-1]
Length = 313
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 30/212 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + KR+LR K GH+GTLDP +G L +C AT+ + A
Sbjct: 19 GVLLLDKPLGLSSNDALVRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDA 78
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K Y + +L A A + ++ + D+ + A + E+E P
Sbjct: 79 DKTYEAKVRL-GATTTTGDAEGEIVVERSVTCDRAAL--DAAIARFTGEIEQVPPMYSAL 135
Query: 147 --NKKPTYMKS------------------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ KP Y + L+ D+ +T + + C GTY+RT +
Sbjct: 136 KKDGKPLYEYARAGQTVERAARQVTIHAITLLDVDLPAATFTMRVTCSKGTYIRTLAEDI 195
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
G LG GA + LRR G + E G VT Q
Sbjct: 196 GEALGCGAHLTGLRRTAVGDLTLE-GAVTLEQ 226
>gi|422848896|ref|ZP_16895572.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
gi|325689917|gb|EGD31921.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
Length = 292
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|444919479|ref|ZP_21239499.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
gi|444708421|gb|ELW49487.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
Length = 289
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP P+S +VV ++ +LR +K GH+GTLDP +G L +C+ AT++
Sbjct: 3 GVLVIDKPKGPTSFDVVRQVRGLLRVKKVGHTGTLDPMATGVLPLCLGEATKVAGFITEG 62
Query: 93 GKEYISIFKLHSAVEN-------VAKASKKKMM--IKQGLLDKHGKPNENTPASYLA--- 140
K Y ++ +L + + VA+A + + + +L + E P Y A
Sbjct: 63 DKAYDAVVRLGAETDTQDAEGKVVAEAPVPPLTASLLEDVLGRFRGTFEQVPPMYSAVKV 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E+E A + Y L+ D + + ++C G +VRT +G
Sbjct: 123 GGKRLYELARAGEEVERASRQVTVY---ELVLRDFNATQLHLSVRCSKGFFVRTLAYDVG 179
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA + LRR SG
Sbjct: 180 RALGCGAHLEALRRTASG 197
>gi|392426760|ref|YP_006467754.1| tRNA pseudouridine synthase B [Desulfosporosinus acidiphilus SJ4]
gi|391356723|gb|AFM42422.1| tRNA pseudouridine synthase B [Desulfosporosinus acidiphilus SJ4]
Length = 294
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV W+++ L+ +K GH+GTLDP G L +C+ + TRL +
Sbjct: 3 GLINVLKPPGMTSADVVGWLRKTLKTKKIGHTGTLDPGVVGVLPICVGKGTRLAEYITGQ 62
Query: 93 GKEYIS--IFKLHSAVENV-------AKASKKKMMIKQGLLDKHGKPNENTPA------- 136
GK Y++ F + + ++ K ++ +++ L G ++ P
Sbjct: 63 GKTYLAEVTFGIATDTQDSFGQRIFEQKPQLQRTEVEEALRKFAGNVSQIPPMYSAVRKE 122
Query: 137 ----------SYLAELEAAPNKKPTYMKSNLIS-SDVTLSTGIIWLKCQAGTYVRTYCVH 185
+ E EA ++ T K L D ++ ++C GTY+RT C
Sbjct: 123 GRHLYEYARQGFSVEREA---REVTISKIELKKWYDEEFPRALLHIECSKGTYIRTLCHD 179
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G LG GA M L R RSG
Sbjct: 180 LGEALGCGAYMSFLLRVRSG 199
>gi|284801713|ref|YP_003413578.1| hypothetical protein LM5578_1467 [Listeria monocytogenes 08-5578]
gi|284994855|ref|YP_003416623.1| hypothetical protein LM5923_1420 [Listeria monocytogenes 08-5923]
gi|404413404|ref|YP_006698991.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC7179]
gi|284057275|gb|ADB68216.1| hypothetical protein LM5578_1467 [Listeria monocytogenes 08-5578]
gi|284060322|gb|ADB71261.1| hypothetical protein LM5923_1420 [Listeria monocytogenes 08-5923]
gi|404239103|emb|CBY60504.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC7179]
Length = 304
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMVGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQASDSSFL 228
>gi|50842956|ref|YP_056183.1| tRNA pseudouridine synthase B [Propionibacterium acnes KPA171202]
gi|289426461|ref|ZP_06428204.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK187]
gi|295131027|ref|YP_003581690.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK137]
gi|335054425|ref|ZP_08547240.1| tRNA pseudouridine synthase B [Propionibacterium sp. 434-HC2]
gi|365963177|ref|YP_004944743.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965418|ref|YP_004946983.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974354|ref|YP_004955913.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn33]
gi|387503857|ref|YP_005945086.1| tRNA pseudouridine synthase B [Propionibacterium acnes 6609]
gi|417930286|ref|ZP_12573665.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182]
gi|422387782|ref|ZP_16467893.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA2]
gi|422393704|ref|ZP_16473754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL099PA1]
gi|422425559|ref|ZP_16502493.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA1]
gi|422427432|ref|ZP_16504348.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA1]
gi|422432602|ref|ZP_16509471.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA2]
gi|422434231|ref|ZP_16511091.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA2]
gi|422438681|ref|ZP_16515519.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL092PA1]
gi|422444276|ref|ZP_16521071.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA1]
gi|422447024|ref|ZP_16523762.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA1]
gi|422451356|ref|ZP_16528059.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA2]
gi|422453510|ref|ZP_16530206.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA3]
gi|422456189|ref|ZP_16532857.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA1]
gi|422462650|ref|ZP_16539272.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL038PA1]
gi|422473596|ref|ZP_16550070.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL056PA1]
gi|422477299|ref|ZP_16553732.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL007PA1]
gi|422486027|ref|ZP_16562384.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA2]
gi|422491949|ref|ZP_16568259.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL086PA1]
gi|422499417|ref|ZP_16575681.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA2]
gi|422509971|ref|ZP_16586122.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA1]
gi|422516820|ref|ZP_16592928.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA2]
gi|422517318|ref|ZP_16593418.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL074PA1]
gi|422521209|ref|ZP_16597241.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL045PA1]
gi|422522684|ref|ZP_16598705.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA2]
gi|422525715|ref|ZP_16601716.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA1]
gi|422528930|ref|ZP_16604905.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA1]
gi|422530544|ref|ZP_16606503.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA1]
gi|422536724|ref|ZP_16612627.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL078PA1]
gi|422540284|ref|ZP_16616153.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA1]
gi|422542280|ref|ZP_16618132.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA1]
gi|422544477|ref|ZP_16620315.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA1]
gi|422547175|ref|ZP_16622997.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA3]
gi|422548561|ref|ZP_16624373.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA1]
gi|422557180|ref|ZP_16632925.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA2]
gi|422560334|ref|ZP_16636024.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA1]
gi|422563884|ref|ZP_16639556.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA1]
gi|422571224|ref|ZP_16646817.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL067PA1]
gi|422579469|ref|ZP_16654991.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA4]
gi|54036453|sp|Q6A7P0.1|TRUB_PROAC RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50840558|gb|AAT83225.1| tRNA pseudouridine synthase B [Propionibacterium acnes KPA171202]
gi|289153189|gb|EFD01907.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK187]
gi|291376936|gb|ADE00791.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK137]
gi|313763609|gb|EFS34973.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA1]
gi|313773546|gb|EFS39512.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL074PA1]
gi|313794004|gb|EFS42028.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA1]
gi|313801390|gb|EFS42641.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA2]
gi|313811599|gb|EFS49313.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA1]
gi|313816789|gb|EFS54503.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA1]
gi|313829592|gb|EFS67306.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA2]
gi|313831341|gb|EFS69055.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL007PA1]
gi|313834951|gb|EFS72665.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL056PA1]
gi|313839888|gb|EFS77602.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL086PA1]
gi|314914764|gb|EFS78595.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA4]
gi|314919274|gb|EFS83105.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA1]
gi|314920815|gb|EFS84646.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA3]
gi|314930494|gb|EFS94325.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL067PA1]
gi|314954348|gb|EFS98754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA1]
gi|314957467|gb|EFT01570.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA1]
gi|314963643|gb|EFT07743.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA1]
gi|314968526|gb|EFT12624.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA1]
gi|314974216|gb|EFT18312.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA1]
gi|314976674|gb|EFT20769.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL045PA1]
gi|314984313|gb|EFT28405.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA1]
gi|315079496|gb|EFT51489.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA2]
gi|315081276|gb|EFT53252.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL078PA1]
gi|315095355|gb|EFT67331.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL038PA1]
gi|315099237|gb|EFT71213.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA2]
gi|315100456|gb|EFT72432.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA1]
gi|315106796|gb|EFT78772.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA1]
gi|315109036|gb|EFT81012.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA2]
gi|327328382|gb|EGE70144.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA2]
gi|327444167|gb|EGE90821.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA2]
gi|327444952|gb|EGE91606.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA1]
gi|327451975|gb|EGE98629.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL092PA1]
gi|327454988|gb|EGF01643.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA3]
gi|327457723|gb|EGF04378.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA2]
gi|328755179|gb|EGF68795.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA1]
gi|328758342|gb|EGF71958.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA2]
gi|328760040|gb|EGF73620.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL099PA1]
gi|333764932|gb|EGL42307.1| tRNA pseudouridine synthase B [Propionibacterium sp. 434-HC2]
gi|335277902|gb|AEH29807.1| tRNA pseudouridine synthase B [Propionibacterium acnes 6609]
gi|340772413|gb|EGR94917.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182]
gi|365739858|gb|AEW84060.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn31]
gi|365742099|gb|AEW81793.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744353|gb|AEW79550.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn33]
Length = 295
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 4 LQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP--- 146
K+Y + +L V V ++ + + + E++ P
Sbjct: 64 SLHDKDYTATVRL--GVGTVTDDAEGDVTVTTDASAIDDRAIHAAMVRQTGEIQQVPAAV 121
Query: 147 -----NKKPTYMKSNLISSDVTLSTGIIWLK---------------------CQAGTYVR 180
N + Y K DV L + + C +GTYVR
Sbjct: 122 SAIKVNGRRAYAKVRA-GEDVVLRPRAVTVSRFEAIAIRRHGQVIDVDVEATCSSGTYVR 180
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 181 ALARDVGADLGVGGHLTALRRTRVG 205
>gi|149002578|ref|ZP_01827510.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP14-BS69]
gi|225860951|ref|YP_002742460.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649504|ref|ZP_04523756.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CCRI 1974]
gi|237822536|ref|ZP_04598381.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CCRI
1974M2]
gi|298230898|ref|ZP_06964579.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254309|ref|ZP_06977895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502791|ref|YP_003724731.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|387788151|ref|YP_006253219.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ST556]
gi|418085255|ref|ZP_12722437.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47281]
gi|418119915|ref|ZP_12756866.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA18523]
gi|418144050|ref|ZP_12780850.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13494]
gi|418189441|ref|ZP_12825956.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47373]
gi|418195421|ref|ZP_12831901.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47688]
gi|419425208|ref|ZP_13965406.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 7533-05]
gi|419427161|ref|ZP_13967344.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5652-06]
gi|419438287|ref|ZP_13978357.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13499]
gi|419444606|ref|ZP_13984621.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19923]
gi|419448820|ref|ZP_13988817.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4075-00]
gi|419451523|ref|ZP_13991509.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP02]
gi|419518976|ref|ZP_14058582.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08825]
gi|421287479|ref|ZP_15738245.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58771]
gi|421303382|ref|ZP_15754046.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17484]
gi|147759189|gb|EDK66182.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP14-BS69]
gi|225727310|gb|ACO23161.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238386|gb|ADI69517.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|353757210|gb|EHD37804.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47281]
gi|353789028|gb|EHD69424.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA18523]
gi|353809791|gb|EHD90051.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13494]
gi|353856583|gb|EHE36552.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47373]
gi|353861948|gb|EHE41881.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47688]
gi|379137893|gb|AFC94684.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ST556]
gi|379538292|gb|EHZ03473.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13499]
gi|379572299|gb|EHZ37256.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19923]
gi|379618614|gb|EHZ83289.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5652-06]
gi|379620095|gb|EHZ84761.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 7533-05]
gi|379623228|gb|EHZ87862.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP02]
gi|379623878|gb|EHZ88511.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4075-00]
gi|379640813|gb|EIA05351.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08825]
gi|395889888|gb|EJH00895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58771]
gi|395902004|gb|EJH12940.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17484]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEY---ISI---FKLHSAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA-- 140
GK Y I++ K A V + ++ + L+D+ P P Y A
Sbjct: 63 GKIYEGEITLGYSTKTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|354604245|ref|ZP_09022236.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
gi|353348012|gb|EHB92286.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
Length = 245
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 33 GYV-NLDKPSNPSSHEVVAWIKRILRCE-----KTGHSGTLDPKTSGCLIVCIDRATRLV 86
GYV +DKP +S +VV ++ +LR K GH+GTLDP +G LIVCI RAT+ V
Sbjct: 9 GYVLPVDKPLGWTSSDVVRKMRVLLRRLGHRKIKVGHAGTLDPLATGVLIVCIGRATKRV 68
Query: 87 KSQQSAGKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
Q+ KEY++ +L H + + I L + G+ + P
Sbjct: 69 DELQAEEKEYLTTVRLGATTPSYDLEHPVDQTYPYGHVTEKSILAALQEMEGEQLQEPPV 128
Query: 137 SYLAEL-------EAAPNKKPTYMKSNLIS------SDVTLSTGIIWLKCQAGTYVRTYC 183
Y A++ E A + M+ L++ + L + ++C GTY+R+
Sbjct: 129 -YSAKMIEGRRAYEYAREGEEVRMRRALVNIYEIAPERIDLPDVTLRVRCSKGTYIRSIA 187
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
+G L G + LRR RSG SE+D E M
Sbjct: 188 RDLGEKLSCGGHLTALRRTRSGAFSEQDLYTIEEVERML 226
>gi|322389230|ref|ZP_08062791.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
gi|321144135|gb|EFX39552.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
Length = 309
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 44/225 (19%)
Query: 27 QEYIRA----GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
QE RA G +N+ K + +SH+VV +++IL +K GH GTLDP G L + + +A
Sbjct: 4 QELERANQMDGIINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKA 63
Query: 83 TRLVKSQQSAGKEYISIFKL---------------HSAVENVAKASKKKMMIKQGLLDKH 127
TR+V+ Q GK Y L + VE A++ MI Q + +
Sbjct: 64 TRMVEFMQDEGKVYEGEITLGFSTTTEDASGEVVERTPVEAPLDAAEVDRMIAQMVGE-- 121
Query: 128 GKPNENTPASYLA----------------ELEAAPNKKPT---YMKSNLISSDVTLSTGI 168
E P Y A E+E P ++ T + +++ IS + +L+
Sbjct: 122 ---IEQVPPMYSAVKVNGRKLYEYARAGEEVE-RPVRQVTIYEFTRTSEISYEESLARFR 177
Query: 169 IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+KC GTY+RT V +G LG A M L R + S ED L
Sbjct: 178 FRVKCSKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEDAL 222
>gi|433635851|ref|YP_007269478.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
gi|432167444|emb|CCK64959.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
Length = 298
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 42/207 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VV +RI + GH+GTLDP +G L++ I+RAT+++ +A
Sbjct: 7 GIVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-- 140
K Y + +L +++V I ++ G+ + P++ A
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVMQSVPAGHLTVEAIDAAMVRLRGEIRQ-VPSAVSAIK 125
Query: 141 ----------------ELEAAPNK------KPTYMKSNLISSDVTLSTGIIWLKCQAGTY 178
+LEA P + + + LI DV + C +GTY
Sbjct: 126 VGGRRAYRLARQGHSVQLEARPIRIDRFELRAARRRDQLIDIDV-------EIDCSSGTY 178
Query: 179 VRTYCVHMGLVLGVGAQMIELRRNRSG 205
+R +G LGVG + LRR R G
Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVG 205
>gi|385793431|ref|YP_005826407.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678756|gb|AEE87885.1| tRNA pseudouridine synthase B [Francisella cf. novicida Fx1]
Length = 302
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLIS------SDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELQEFDIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KALGCGGHLIALQRTQSG 205
>gi|422858696|ref|ZP_16905346.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
gi|327459839|gb|EGF06179.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|383939658|ref|ZP_09992812.1| tRNA pseudouridine(55) synthase [Streptococcus pseudopneumoniae
SK674]
gi|383712494|gb|EID69546.1| tRNA pseudouridine(55) synthase [Streptococcus pseudopneumoniae
SK674]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA-- 140
GK Y L A V + + + L+D+ P P Y A
Sbjct: 63 GKVYEGEITLGYSTTTEDASGEVVAETPVLSQLDEKLVDEAIASLTGPITQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M +L R + +G+Q E+
Sbjct: 182 VDLGEKLGYAAHMSQLTRTSAAGLQLED 209
>gi|15901075|ref|NP_345679.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae TIGR4]
gi|111657814|ref|ZP_01408531.1| hypothetical protein SpneT_02000996 [Streptococcus pneumoniae
TIGR4]
gi|418187216|ref|ZP_12823743.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47360]
gi|418229954|ref|ZP_12856557.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP01]
gi|421270635|ref|ZP_15721490.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPAR48]
gi|37089639|sp|Q97QJ3.1|TRUB_STRPN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|14972693|gb|AAK75319.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae TIGR4]
gi|353851510|gb|EHE31502.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47360]
gi|353887476|gb|EHE67254.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP01]
gi|395867764|gb|EJG78884.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPAR48]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEY---ISI---FKLHSAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA-- 140
GK Y I++ K A V + ++ + L+D+ P P Y A
Sbjct: 63 GKIYEGEITLGYSTKTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|334128529|ref|ZP_08502417.1| tRNA pseudouridine synthase B [Centipeda periodontii DSM 2778]
gi|333387206|gb|EGK58409.1| tRNA pseudouridine synthase B [Centipeda periodontii DSM 2778]
Length = 291
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+V+ ++RI + ++ GH+GTLDP +G L + + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVIDIVRRIFKQKRVGHAGTLDPAAAGILPIALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYL--- 139
K Y + A +E+V + + +L E P +Y
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGDVIESVRHPVLPSVEELRSVLACFVGDIEQQPPAYSAIK 122
Query: 140 -------------AELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
AE+E P + T + L+ D + ++ + C GTY+R+ C+ +
Sbjct: 123 VGGQRAYDLVRQGAEVE-MPMRTVTIHRLELVHVDAVHARILVDVDCAKGTYIRSLCMDI 181
Query: 187 GLVLGVGAQMIELRRNRSG 205
G + + A M L R R G
Sbjct: 182 GAAMRLPATMRFLLRTRVG 200
>gi|384135118|ref|YP_005517832.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289203|gb|AEJ43313.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 302
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VV ++R L + GH+GTLDP +G L++C+ R TRL++
Sbjct: 6 GVLLIDKPKGMTSHDVVHRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQG 65
Query: 93 GKEYIS--IFKLHSAVEN-----VAKASKKKM---MIKQGLLDKHGKPNENTPASYLAEL 142
KEY +F + + ++ VA+A + +++ G+ + PA +
Sbjct: 66 DKEYCGTVVFGVGTDTDDAEGTVVAQAQATGLDLAAVREAAARLTGEIRQRPPAYSAIHI 125
Query: 143 E-------AAPNKKPTYMKSNLISSDVT---------LSTGIIWLKCQAGTYVRTYCVHM 186
+ A KK + + +T L+ ++C GTYVR C +
Sbjct: 126 DGRRAYDLARQGKKVEIPERTVHVRTLTLDEFHHEGELAVARFHVRCSKGTYVRALCRDL 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGL 213
G ++GV A M LRR G ED +
Sbjct: 186 GALVGVPAHMRSLRRLAIGCARVEDAI 212
>gi|456738613|gb|EMF63180.1| tRNA pseudouridine synthase B [Propionibacterium acnes FZ1/2/0]
Length = 295
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 38/208 (18%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+++G + +DKP+ +SH+VV ++R++ K GH+GTLDP SG L+V ++RATRL+
Sbjct: 4 LQSGVLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 63
Query: 90 QSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYL---AELEAAP 146
K+Y + +L V V ++ + + D + A+ + E++ P
Sbjct: 64 SLHDKDYTATVRL--GVGTVTDDAEGDVTVTT---DASAIDDTAIHAAMVRQTGEIQQVP 118
Query: 147 --------NKKPTYMKSNLISSDVTLSTGIIWLK---------------------CQAGT 177
N + Y K DV L + + C +GT
Sbjct: 119 AAVSAIKVNGRRAYAKVRA-GEDVVLRPRAVTVSRFEAIAIRRHGQVIDVDVEATCSSGT 177
Query: 178 YVRTYCVHMGLVLGVGAQMIELRRNRSG 205
YVR +G LGVG + LRR R G
Sbjct: 178 YVRALARDVGADLGVGGHLTALRRTRVG 205
>gi|451936501|ref|YP_007460355.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777424|gb|AGF48399.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 237
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+ LDKP+ +S+ + ++R L +K GH+GTLDP +G L+ C +AT+ +A
Sbjct: 8 GFFLLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKATKKSNIFLNA 67
Query: 93 GKEYISIFKLHSAVEN-------VAKASKKKMM----IKQGLLDKHGKPNENTPASYLAE 141
K YI+ KL + V+++S K + I++ L+ G+ + P +
Sbjct: 68 SKSYIATIKLGEETDTGDLTGKVVSQSSDYKFIDISSIEKTLVHFMGEIEQIPPMYSAIK 127
Query: 142 LEAAP--------------NKKPTYMKSNLIS-SDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ P +K T NLI+ SD T + L C GTY+RT +
Sbjct: 128 VNGMPLYKYARTGIDIYRDPRKVTIYNINLINFSDHTFK---LELSCSKGTYIRTLAQDI 184
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LG A +I LRR + G
Sbjct: 185 GRKLGCFAHLISLRRTKVG 203
>gi|387876895|ref|YP_006307199.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
gi|386790353|gb|AFJ36472.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
Length = 296
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 51/213 (23%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP +SH+VV +RI + GH+GTLDP +G L++ ++RAT+++ ++
Sbjct: 5 GIVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSAS 64
Query: 93 GKEYISIFKL---------------------------HSAVE----NVAKASKKKMMIKQ 121
K Y + +L +AVE ++A+ IK
Sbjct: 65 SKSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTSEAIGTAVEGLRGDIAQVPSTVSAIKV 124
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNK---------KPTYMKSNLISSDVTLSTGIIWLK 172
G + E + ELEA P + +P +++ DV ++
Sbjct: 125 GGKRAYRLAREG----HAVELEARPVRIDRFDVRGVRPGPHGLDVLDVDV-------EVE 173
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
C +GTY+R +G LGVG + LRR R+G
Sbjct: 174 CSSGTYIRALARDLGAALGVGGHLTALRRTRAG 206
>gi|418966270|ref|ZP_13518018.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340650|gb|EID18943.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKVGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEVLIDEAIESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 INGRKLYEYARAGQEVE-RPERQVTIYSFERTSPISYEDEKARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G+ LG+ + M +L R S S ED L
Sbjct: 182 VDLGVKLGLASHMSQLTRISSAGMSLEDAL 211
>gi|94310967|ref|YP_584177.1| tRNA pseudouridine synthase B [Cupriavidus metallidurans CH34]
gi|189036567|sp|Q1LLR8.1|TRUB_RALME RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|93354819|gb|ABF08908.1| tRNA pseudouridine synthase [Cupriavidus metallidurans CH34]
Length = 314
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 30/212 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + KR+LR K GH+GTLDP +G L +C AT+ + A
Sbjct: 19 GVLLLDKPLGLSSNDALVRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDA 78
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP------ 146
K Y + +L + ++ ++++++ + H + A + E+E P
Sbjct: 79 DKTYEAKVRLGAT--TTTGDAEGEIVVERLVTCDHDALDAAV-ARFTGEIEQVPPMYSAL 135
Query: 147 --NKKPTYMKS------------------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
+ KP Y + L+ D+ + + + C GTY+RT +
Sbjct: 136 KKDGKPLYEYARAGQTVERAARQVTIHAITLLDVDLPAAMFTMRVTCSKGTYIRTLAEDV 195
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
G LG GA +I LRR G + E G VT Q
Sbjct: 196 GEALGCGAHLIGLRRTAVGDLTLE-GAVTLEQ 226
>gi|168704881|ref|ZP_02737158.1| TruB [Gemmata obscuriglobus UQM 2246]
Length = 286
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 27/206 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRIL-RCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
G + +DKP +S + V ++R + K GH+GTLDP +G L+VC+ ATRL Q+
Sbjct: 3 GLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYVQA 62
Query: 92 AGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----- 146
GK Y S F+L + + + + + G + G+ E + ++ +E P
Sbjct: 63 MGKTYASRFRLGAT--STSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120
Query: 147 -------------NKKPTYMKSNLISSDVTLSTGIIW------LKCQAGTYVRTYCVHMG 187
K + + D TG W + C GTY+R+ +G
Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGL 213
LG G + LRR R G ED +
Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAV 206
>gi|422344871|ref|ZP_16425795.1| hypothetical protein HMPREF9432_01855 [Selenomonas noxia F0398]
gi|355376325|gb|EHG23579.1| hypothetical protein HMPREF9432_01855 [Selenomonas noxia F0398]
Length = 291
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP+ SSH+VV ++RI + ++ GH+GTLDP +G L V + RA RLV+ + A
Sbjct: 3 GFINVLKPTGLSSHDVVDIVRRIFKQKRVGHAGTLDPAAAGVLPVALGRAARLVEYMEGA 62
Query: 93 GKEYISIFKLHSAVEN-------VAKASKKKMMIKQGL---LDKHGKPNENTPASYLA-- 140
K Y + A + +A A+ + ++ L L + TP +Y A
Sbjct: 63 DKSYRAEIAFGYATDTGDVYGDVIASAAHPVLPPEEELHAVLLRFIGQIRQTPPAYSAIK 122
Query: 141 -----------ELEAAPNKKPTYM--KSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+ A + + M + L+ D ++ + C GTY+R+ C+ +G
Sbjct: 123 IGGQRAYDLVRQGTAVEMRARSVMIHRLELLYVDAERRRILVDVDCGKGTYIRSLCMDIG 182
Query: 188 LVLGVGAQMIELRRNRSGIQSEED 211
+G+ A M L R R G S D
Sbjct: 183 AAIGLPATMRFLLRVRVGRFSLAD 206
>gi|149012263|ref|ZP_01833332.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP19-BS75]
gi|147763589|gb|EDK70524.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP19-BS75]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA-- 140
GK Y L A V + ++ + L+D+ P P Y A
Sbjct: 63 GKIYEGEITLGYSTTTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|307709375|ref|ZP_07645833.1| tRNA pseudouridine synthase B [Streptococcus mitis SK564]
gi|307619958|gb|EFN99076.1| tRNA pseudouridine synthase B [Streptococcus mitis SK564]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 33/209 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL-------HSAVENVAK----ASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
GK Y L ++ E VA+ + + ++ + + + G P P Y A
Sbjct: 63 GKVYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAITNLTG-PITQIPPMYSAV 121
Query: 141 ---------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 122 KVNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M +L R + +G+Q E+
Sbjct: 181 SVDLGEKLGYAAHMSQLTRTSAAGLQLED 209
>gi|397905346|ref|ZP_10506203.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Caloramator
australicus RC3]
gi|397161619|emb|CCJ33537.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Caloramator
australicus RC3]
Length = 285
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 29/199 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +SH+VV +++RI++ ++ GH+GTLDP +G L VCI AT++V+
Sbjct: 3 GVINILKPPGMTSHDVVDYLRRIIKIKRIGHTGTLDPGAAGVLPVCIGIATKIVEFLTRD 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA--SYLAELEAAP---- 146
KEYI L +A + K + + + N+ A +++ E+E P
Sbjct: 63 TKEYICELTLGNATDTYDKYGN---FLYEDIDCSFINFNDLNKAIKNFIGEIEQKPPKFS 119
Query: 147 ----NKKPTY------MKSNLISSDVTLST----------GIIWLKCQAGTYVRTYCVHM 186
N K Y + ++ S VT+ ++ ++C GTY+R+ C +
Sbjct: 120 AIKINGKRAYDLAREGLDFDIPSRKVTIYNIEVLSFNSPKALLKVECSKGTYIRSLCNDI 179
Query: 187 GLVLGVGAQMIELRRNRSG 205
G L V M L R R+G
Sbjct: 180 GEELKVKGYMSFLLRTRTG 198
>gi|418247743|ref|ZP_12874129.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
gi|353452236|gb|EHC00630.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
Length = 298
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG V +DKP+ +SH+VV+ +RI K GH+GTLDP +G L++ I+RAT+++
Sbjct: 7 RAGLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLT 66
Query: 91 SAGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + + + ++ ++ + ++ I+ + G + P+S A
Sbjct: 67 LTTKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQ-VPSSVSA 125
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + + D L + + C +GTY+R
Sbjct: 126 IKVDGQRAYKLAREGQSVELAARPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRAL 185
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
G LGVG + LRR R G
Sbjct: 186 ARDAGAALGVGGHLTALRRTRVG 208
>gi|397679918|ref|YP_006521453.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
gi|395458183|gb|AFN63846.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
Length = 313
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG V +DKP+ +SH+VV+ +RI K GH+GTLDP +G L++ I+RAT+++
Sbjct: 22 RAGLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLT 81
Query: 91 SAGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + + + ++ ++ + ++ I+ + G + P+S A
Sbjct: 82 LTTKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQ-VPSSVSA 140
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + + D L + + C +GTY+R
Sbjct: 141 IKVDGQRAYKLAREGQSVELAARPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRAL 200
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
G LGVG + LRR R G
Sbjct: 201 ARDAGAALGVGGHLTALRRTRVG 223
>gi|375142692|ref|YP_005003341.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
gi|359823313|gb|AEV76126.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
Length = 305
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG V +DKP+ +SH+VV +RI K GH+GTLDP +G L+V I+RAT+++ +
Sbjct: 16 AGLVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTA 75
Query: 92 AGKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
K Y + +L ++ V+ A + I+ G+ ++ P++ A
Sbjct: 76 TDKSYAATIRLGQTTSTEDAEGEVLDTVSAAGVDQTQIESAAAALRGEIDQ-IPSTVSAI 134
Query: 141 ---------------ELEAAPNK-KPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+E AP + + + + + C +GTY+R
Sbjct: 135 KVGGQRAYKLAREGQSVELAPRTVRIERFDVRSVRREGDFVDVDVVVDCSSGTYIRALAR 194
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 195 DVGAALGVGGHLTALRRTRVG 215
>gi|334130026|ref|ZP_08503829.1| tRNA pseudouridine synthase B [Methyloversatilis universalis FAM5]
gi|333445062|gb|EGK73005.1| tRNA pseudouridine synthase B [Methyloversatilis universalis FAM5]
Length = 316
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS++ + +R+ + K GH+GTLDP +G L VC ATR A
Sbjct: 12 GVLLLDKPLGLSSNDALQKARRLFQAAKAGHTGTLDPLATGLLPVCFGEATRFAGLMLDA 71
Query: 93 GKEYISIFKL---------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELE 143
KEYI+ +L V + + + ++Q L+ G ++ P + +
Sbjct: 72 DKEYIAEVRLGIRTATGDAEGEVLQTREVTISEAALRQALVAHTGDIDQVPPMHSALKKD 131
Query: 144 AAP-----------NKKPTYMKSNLIS-SDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
P + +++ + I V L + + C GTY+RT +G +LG
Sbjct: 132 GKPLYEYARAGETVERAVRHVRIHEIELQQVALPVFTMRVLCSKGTYIRTLAEDIGEMLG 191
Query: 192 VGAQMIELRRNRSG 205
GA + LRR R+G
Sbjct: 192 CGAHLTGLRRTRTG 205
>gi|334340467|ref|YP_004545447.1| tRNA pseudouridine synthase B [Desulfotomaculum ruminis DSM 2154]
gi|334091821|gb|AEG60161.1| tRNA pseudouridine synthase B [Desulfotomaculum ruminis DSM 2154]
Length = 311
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +SH+VV +I+R+ +K GH+GTLDP +G L VC+ +ATRL +
Sbjct: 3 GIMNVLKPPGMTSHDVVYFIRRLTGIKKCGHTGTLDPGAAGVLPVCLGKATRLTRFVTEG 62
Query: 93 GKEYISIFKLHSAV------------ENVAKASKKKMMIKQGLLDKH-GKPNENTPASY- 138
K Y + L A ++ ++ S ++++ G+L GK + P S
Sbjct: 63 DKTYRAELTLGVATTSLDAFGEILEEQDASRISPEQLL---GVLPLFTGKIQQTPPMSSA 119
Query: 139 -------LAELEAAPNKKPTYMKSNLIS-SDVTLSTGIIWLK----------CQAGTYVR 180
L +LE A K + S +I+ D+ G W K C GTYVR
Sbjct: 120 IKIKGKKLYQLERAGQK--VEVPSRMITIHDLRFIAGWHWQKPHPRILLDVTCSKGTYVR 177
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+ C +G LG A M L R+R G
Sbjct: 178 SLCSDIGKALGCSAYMSFLLRSRVG 202
>gi|261407933|ref|YP_003244174.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
gi|261284396|gb|ACX66367.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
Length = 303
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++ ++R ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLLDK----HGKPNENTPASYLAEL 142
KEY ++ +L + + NV + + + + + L+ G+ ++ P ++
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAVKI 125
Query: 143 ------EAAPNKKPTYMKSNLIS-SDVTLS--------TGIIW-LKCQAGTYVRTYCVHM 186
E A K KS ++ ++ ++ T I + + C GTY+RT CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCVDI 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
G LG+ + M++L R S +E L T Q F
Sbjct: 186 GRKLGLPSVMVKLVRTISAGITEAQCL-TLEQIEQF 220
>gi|422409543|ref|ZP_16486504.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL F2-208]
gi|313608975|gb|EFR84721.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL F2-208]
Length = 304
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALAKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + + TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQLEISCGKGTYIRTLA 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 182 VMVGELLGYPAHMSKLERIRSGFFKKEDCLTLVEIDEMMQASDSSFL 228
>gi|134301464|ref|YP_001121432.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751217|ref|ZP_16188271.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis AS_713]
gi|421753073|ref|ZP_16190077.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 831]
gi|421756802|ref|ZP_16193698.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 80700103]
gi|421758669|ref|ZP_16195512.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 70102010]
gi|189036482|sp|A4IWL0.1|TRUB_FRATW RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|134049241|gb|ABO46312.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409088289|gb|EKM88363.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 831]
gi|409088526|gb|EKM88592.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis AS_713]
gi|409091948|gb|EKM91932.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 70102010]
gi|409093237|gb|EKM93190.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 80700103]
Length = 302
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDISSNKVLQQLKYLFNAQKVGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|403069142|ref|ZP_10910474.1| tRNA-pseudouridine 5S synthase [Oceanobacillus sp. Ndiop]
Length = 297
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 26/209 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP +SH+ V +R + +K GH+GTLDP+ G L +CI +AT++V
Sbjct: 3 GILPLWKPKGFTSHDCVMKCRRYFKTKKVGHTGTLDPEVEGILPICIGQATKIVPFLTET 62
Query: 93 GKEYISIFKLHSAVENV----AKASKKKM-------MIKQGLLDKHGKPNENTP------ 135
K YI+ KL S + + +K++ +I L GK + P
Sbjct: 63 SKTYIAELKLGSTTDTEDAHGSVIEQKELTDFPAVSVIDDVLASFTGKITQVPPMYSAVK 122
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
L E A P ++ T + + +S D T + + C GTY+RT CV +G
Sbjct: 123 VNGKKLYEYARANQEVERPKREVTIYELDKLSVDPQQQTIRMKIICSKGTYIRTLCVDIG 182
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
LG A M L R ++G SE++ VTF
Sbjct: 183 KELGYPAHMSALVRTKTGSFSEKNS-VTF 210
>gi|404405081|ref|ZP_10996665.1| tRNA pseudouridine synthase B [Alistipes sp. JC136]
Length = 241
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 15 LPFGKSPLQ-RTIQEYIRAGYVN-LDKPSNPSSHEVVAWIKRILRCE-----KTGHSGTL 67
+P + PL R I GY+ LDKP +S +VV +K LR K GH+GTL
Sbjct: 1 MPITREPLDFRGIN--FEDGYIAVLDKPLRWTSTDVVRKVKFALRKLGYRKIKVGHAGTL 58
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKL----------HSAVENVAKASKKKM 117
DP SG L+VCI RAT+LV + Q+ KEYI+ L H + +
Sbjct: 59 DPLASGILLVCIGRATKLVDALQAEEKEYIADVMLGATTPSYDLEHEIDQTYPYEHITRE 118
Query: 118 MIKQGLLDKHGKPNENTPASYLAE-------LEAAPNKKPTYMKSNLIS------SDVTL 164
+++ L G+ TP Y A+ E A + ++ LI+ + L
Sbjct: 119 AVEEALASLTGE-RLQTPPVYSAKKIEGTRAYELARAGEEVAVRQALITIYEMEIVEYAL 177
Query: 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
I ++C GTY+R+ +G L GA + LRR RSG
Sbjct: 178 PRVRIRVRCSKGTYIRSLAHEIGQALRSGAHLSSLRRTRSG 218
>gi|187931189|ref|YP_001891173.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712098|gb|ACD30395.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 302
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|171463765|ref|YP_001797878.1| tRNA pseudouridine synthase B [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193303|gb|ACB44264.1| tRNA pseudouridine synthase B [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 303
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V LDKP+ SS + V +K +K GH+GTLDP +G L +C+ AT+ + A
Sbjct: 7 GVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLLEA 66
Query: 93 GKEYISIFKLHSAVE---------------NVAKASKKKMMIKQGLLDKHGKPNENTPAS 137
K YI+ K + + A ++ K+ + LL K P P
Sbjct: 67 DKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIAL-DALLPKFAGPISQVPPM 125
Query: 138 YLAELEAAPNKKPTY------MKSNLISSDVTLS----TGIIW------LKCQAGTYVRT 181
Y A + KP Y ++ I D+ + T I W + C GTY+R
Sbjct: 126 YSA---LKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRV 182
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225
+G LG GA ++ LRR E G +T Q E I
Sbjct: 183 LAEDIGNALGCGAHLVGLRRT-------EVGHLTLEQSFKIESI 219
>gi|154249712|ref|YP_001410537.1| tRNA pseudouridine synthase B [Fervidobacterium nodosum Rt17-B1]
gi|154153648|gb|ABS60880.1| tRNA pseudouridine synthase B [Fervidobacterium nodosum Rt17-B1]
Length = 308
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 27/204 (13%)
Query: 26 IQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRL 85
+++ I +G + +DK P+SH++V ++ I ++ GH+GTLDP +G L+V I +ATRL
Sbjct: 1 MEQKIISGLLLVDKDKGPTSHDIVNKVRNIFNVKQVGHAGTLDPFATGLLLVGIGKATRL 60
Query: 86 VKSQQSAGKEY---------ISIFKLHSAV--ENVAKASKKKMMIKQGLLDKHGKPNENT 134
++ Q K Y F + V EN S+++++ ++ +
Sbjct: 61 LEYLQGETKVYKVKMQLGIITDTFDITGTVMEENNINNSEREII---EAINSFIGTYKQV 117
Query: 135 PASYLAE-------LEAAPNKKPTYMKSNLIS----SDVTLSTGIIWL--KCQAGTYVRT 181
P +Y A+ E A K + ++ SD+ + + K AGTY+R+
Sbjct: 118 PPAYSAKKYQGKKLYELAREGKIINLPPREVTIYEISDIKIELPYVEFTTKVSAGTYIRS 177
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
C+ +G LG GA +ELRR + G
Sbjct: 178 LCMDIGYKLGCGATTVELRRTKVG 201
>gi|147677607|ref|YP_001211822.1| pseudouridine synthase [Pelotomaculum thermopropionicum SI]
gi|189036550|sp|A5D2S3.1|TRUB_PELTS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146273704|dbj|BAF59453.1| pseudouridine synthase [Pelotomaculum thermopropionicum SI]
Length = 316
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G VN+ KP SSH+VV I+RI +K GH+GTLDP +G L+VC+ ATRL +
Sbjct: 3 GIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLLGE 62
Query: 93 GKEY---------ISIFKLHSAVENVAKAS-KKKMMIKQGLLDKHGKPNENTPASY---- 138
KEY S + + + AS K+ I + L + G+ + P +
Sbjct: 63 DKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAIKW 122
Query: 139 ----LAELE-----AAPNKKPTYMKSNLISSDVTLST----GIIWLKCQAGTYVRTYCVH 185
L EL ++ Y+KS T ++ L C GTYVR+ C
Sbjct: 123 RGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLCHD 182
Query: 186 MGLVLGVGAQMIELRRNRSG 205
MG LG GA M L R R+G
Sbjct: 183 MGSRLGCGAHMSFLVRTRAG 202
>gi|407718149|ref|YP_006795554.1| tRNA pseudouridine synthase B [Leuconostoc carnosum JB16]
gi|407241905|gb|AFT81555.1| tRNA pseudouridine synthase B [Leuconostoc carnosum JB16]
Length = 302
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 38/235 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +S +VVA ++R + + GH+GTLDP G L+V + +AT+L+ Q+
Sbjct: 9 GIIVIDKPRGVTSFDVVAKVRRAIGQRRVGHAGTLDPNVDGVLVVALGKATKLIDELQTR 68
Query: 93 GKEYISIFKLHSAVEN------VAKASK-----KKMMIKQGLLDKHGKPNENTP------ 135
K YI L A E+ V + + +I + + + G + P
Sbjct: 69 PKRYIGEITLGFATESEDLDGEVVEETTITTPFSNRVIDEAIAELQGHIKQTPPMFSAVK 128
Query: 136 --ASYLAELEAAPNKKPTYMKSNLI-----SSDVTLSTGIIWLKCQA----GTYVRTYCV 184
L E A ++ +I +SDVT +A GTY+RT V
Sbjct: 129 VNGKRLYEYARAGEIVDRPIRDAIIYNFKRTSDVTYVDQRQLFNFEATVSKGTYIRTLAV 188
Query: 185 HMGLVLGVGAQMIELRRNR-SGIQSEE----DGLVTFRQEHMFEHIVS-----TW 229
+G +GV A M L R SGI E+ + L T +E + +HI+S TW
Sbjct: 189 DVGKKIGVPATMTSLTRTMGSGITQEDAITLESLKTLSREELLQHIISIQDILTW 243
>gi|319937191|ref|ZP_08011598.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
gi|319807557|gb|EFW04150.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
Length = 278
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KPS +SH+VV I+RIL +K GH GTLDP +G L++CI +AT+ ++ S
Sbjct: 3 GILLIHKPSGMTSHDVVNRIRRILHTKKVGHCGTLDPDATGVLVLCIGKATKALQFLMSE 62
Query: 93 GKEYISIFKLHSA------------------VENVAK------ASKKKMMIKQGLLDKHG 128
KEYI+ L +A VENV + ++K++ + G
Sbjct: 63 EKEYITTLSLGTATDTYDASGTVIESREYDGVENVVEVLQSFVGNQKQIPPIYSAIKVKG 122
Query: 129 KPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGL 188
K ++ E++ P + + L+ D T + ++C GTY+R+ CV +
Sbjct: 123 KKLYEYARNH-EEVKIEP-RDIIIHEIELLQQDENEIT--LRVRCSKGTYIRSLCVDIAK 178
Query: 189 VLGVGAQMIELRRNRSGIQSEED 211
LG M +L R++SG ED
Sbjct: 179 KLGYPGHMSKLIRSQSGHFRLED 201
>gi|254373390|ref|ZP_04988878.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374853|ref|ZP_04990334.1| tRNA pseudouridine synthetase B [Francisella novicida GA99-3548]
gi|151571116|gb|EDN36770.1| tRNA pseudouridine synthase B [Francisella novicida GA99-3549]
gi|151572572|gb|EDN38226.1| tRNA pseudouridine synthetase B [Francisella novicida GA99-3548]
Length = 302
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|125717774|ref|YP_001034907.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK36]
gi|189036601|sp|A3CMF2.1|TRUB_STRSV RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|125497691|gb|ABN44357.1| tRNA pseudouridine synthase B, putative [Streptococcus sanguinis
SK36]
Length = 292
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFKRTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTFSAGMSLDDAL 211
>gi|118498034|ref|YP_899084.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194323259|ref|ZP_03057043.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTE]
gi|208779556|ref|ZP_03246901.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
gi|189036481|sp|A0Q7W5.1|TRUB_FRATN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118423940|gb|ABK90330.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194322623|gb|EDX20103.1| tRNA pseudouridine synthase B, putative [Francisella tularensis
subsp. novicida FTE]
gi|208744517|gb|EDZ90816.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
Length = 302
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDVSSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFDIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|427407227|ref|ZP_18897432.1| tRNA pseudouridine synthase B [Selenomonas sp. F0473]
gi|425707702|gb|EKU70746.1| tRNA pseudouridine synthase B [Selenomonas sp. F0473]
Length = 292
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+VN+ K SSH+V+ ++R+ + ++ GH+GTLDP +G L V + RA RL++ + A
Sbjct: 3 GFVNVLKSPGLSSHDVIDIVRRLFKQKRAGHAGTLDPAAAGVLPVALGRAARLIEYLEGA 62
Query: 93 GKEYISIFKLHSAVE--NVAKASKKKMM---------IKQGLLDKHGKPNENTPASYLAE 141
K Y + A + +V A +++ ++ L G + PA +
Sbjct: 63 DKSYRAEISFGCATDTGDVYGAVTERLSSFDFPSEEEVRAALARFVGVIEQRPPAHSAIK 122
Query: 142 LEA--------------APNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
+ P ++ +L+ D +I + C GTYVRT C +G
Sbjct: 123 IGGRRAYDLVRRGRTVDMPVRRVEIRGISLLRYDAAQRGILIDVDCGKGTYVRTLCADIG 182
Query: 188 LVLGVGAQMIELRRNRSGIQSEED 211
LG+ A M L R R G S D
Sbjct: 183 AALGLPALMRFLLRTRVGAFSVRD 206
>gi|323351791|ref|ZP_08087445.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
gi|322122277|gb|EFX94003.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
Length = 292
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEVMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGTKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|418146414|ref|ZP_12783194.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13637]
gi|421236317|ref|ZP_15692915.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2071004]
gi|353813622|gb|EHD93850.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13637]
gi|395602162|gb|EJG62305.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2071004]
Length = 292
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 33/209 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYIS--IFKLHSAVENVAK---------ASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
GK Y I + E+ + +S + ++ + + G P P Y A
Sbjct: 63 GKIYEGEIILGYSTTTEDASGEVVAETPVLSSLDEKLVDEAIASLTG-PITQIPPMYSAV 121
Query: 141 ---------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 122 KVNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 181 SVDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|452974425|gb|EME74245.1| tRNA pseudouridine synthase B [Bacillus sonorensis L12]
Length = 309
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 47/231 (20%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L KP+ +SH+ V I+++L+ +K GH+GTLDP+ SG L +CI RAT++V+
Sbjct: 4 GVLLLHKPAGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLTEK 63
Query: 93 GKEYISIFKLHSAVEN---VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
K Y + L + E + ++ K + P+E T S L LE +
Sbjct: 64 SKTYDAEVTLGFSTETEDQTGEITETKAV--------SNPPDEQTVRSVLKSLEGTIEQV 115
Query: 150 PTYM-----------------------KSNLISSDVTLSTGI----------IWLKCQAG 176
P K ++ + L+TGI + C G
Sbjct: 116 PPMYSAVKVGGKKLYEYARAGIEVERPKRSITIHHIELTTGISREEGTARFRFTVTCSKG 175
Query: 177 TYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVS 227
TYVRT V +G LG A M L R SG S ++ L TF H+ H+ S
Sbjct: 176 TYVRTLAVTIGEKLGYPAHMSHLIRTASGHFSLDECL-TFT--HIEGHVAS 223
>gi|419966268|ref|ZP_14482199.1| tRNA pseudouridine synthase B [Rhodococcus opacus M213]
gi|414568358|gb|EKT79120.1| tRNA pseudouridine synthase B [Rhodococcus opacus M213]
Length = 305
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 29/204 (14%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
+ AG + +DK + +SH+VVA +++L K GH+GTLDP +G L++ ++RAT+L+
Sbjct: 12 VGAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLL 71
Query: 90 QSAGKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLDKHGKPNE--NTPASYLA 140
K Y + +L A E VA A M ++ H + P+S A
Sbjct: 72 ALTTKAYTATIRLGQATTTDDAEGEVVASADASGMTDEEIAAQVHTLTGDIQQIPSSVSA 131
Query: 141 ----------------ELEAAPNKKPTYMKSNLIS--SDVTLSTGIIWLKCQAGTYVRTY 182
E E AP + T + +++ ++ T + ++C +GTYVR
Sbjct: 132 IKVDGRRAHALIRAGEEFELAP-RSVTVSRFEVVARRTEGTFVDLDVEVECSSGTYVRAL 190
Query: 183 CVHMGLVL-GVGAQMIELRRNRSG 205
+G+ L GVG + LRR R G
Sbjct: 191 ARDLGIALIGVGGHLTSLRRTRVG 214
>gi|375091592|ref|ZP_09737881.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
gi|374563114|gb|EHR34436.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
Length = 297
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 30/202 (14%)
Query: 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQ 89
++ G + ++K + +SH+VV+ ++R L ++ GH+GTLDP +G L +CI +TR+
Sbjct: 1 MKTGILVVNKSESLTSHDVVSILRRKLNIKRIGHTGTLDPMATGVLPICIGNSTRISSYI 60
Query: 90 QSAGKEYISIFKL------HSAVENVAKASKKKMM----IKQGLLDKHGKPNENTPASYL 139
GK YI+ K + + +V S + I L G+ E P Y
Sbjct: 61 MEQGKSYIAELKFGTSTTTYDSTGDVVDKSDNTLFSEKQINDALASFKGEI-EQYPPKYS 119
Query: 140 A----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
A ++E P K Y LIS + T +I + C GTY+R+
Sbjct: 120 AIKVDGKKLYEYARQGQDVEIKPRKIKIY-DIKLIS--IKDETCVIEIDCSKGTYIRSLI 176
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+GL L A M +L RNR G
Sbjct: 177 HDLGLKLNSFAHMTDLVRNRVG 198
>gi|456062947|ref|YP_007501917.1| tRNA pseudouridine synthase B [beta proteobacterium CB]
gi|455440244|gb|AGG33182.1| tRNA pseudouridine synthase B [beta proteobacterium CB]
Length = 303
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 87/224 (38%), Gaps = 42/224 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V LDKP+ SS V +KR EK GH+GTLDP +G L +C+ AT+ + A
Sbjct: 7 GVVLLDKPAGMSSQGAVTAVKRAFNAEKAGHTGTLDPMATGLLPICLGEATKYSQDLLEA 66
Query: 93 GKEYISIFKLHSAVEN---------------VAKASKKKMMIKQGLLDKHGKPNENTPAS 137
K YI+ K + A A+ K + LL P P
Sbjct: 67 DKTYIAQVKFGQRTDTGDAEGLVIEELPLPVFADAATIKAAL-DALLPAFTGPISQVPPM 125
Query: 138 YLA----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
Y A ELE AP + + ++V + + C GTY+R
Sbjct: 126 YSALKRDGKPLYEYARAGVELERAPRNITIHA---IRWTNVNWPEATLEVSCSKGTYIRV 182
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHI 225
+G LG GA ++ LRR E G +T Q E I
Sbjct: 183 LAEDIGKALGCGAHLVGLRRT-------EVGHLTLEQSFTIESI 219
>gi|85860517|ref|YP_462719.1| tRNA pseudouridine synthase B [Syntrophus aciditrophicus SB]
gi|123517500|sp|Q2LWU1.1|TRUB_SYNAS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|85723608|gb|ABC78551.1| tRNA pseudouridine synthase B [Syntrophus aciditrophicus SB]
Length = 312
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDK +S +VV +KRIL K GH+GTLDP +G L +C++ AT+LV+
Sbjct: 3 GILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLSLD 62
Query: 93 GKEYISIFKLHSAVENVAKASK---------KKMMIKQGLLDKHGKPNENTPASYLA--- 140
KEY + L E + + ++ I++ L G P P Y A
Sbjct: 63 DKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTG-PISQEPPRYSAVKF 121
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
++ P Y + I ++ L + C GTY+RT C +G
Sbjct: 122 KGRPLYSWARKGVDIALPPRTVQVY---SSILEEIALPYVTFRVACSKGTYIRTLCADLG 178
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA M LRR R G
Sbjct: 179 ERLGCGACMSVLRRLRCG 196
>gi|422882068|ref|ZP_16928524.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
gi|332361832|gb|EGJ39635.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
Length = 292
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGYSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKP---TYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ ++ +++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVFIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|332283704|ref|YP_004415615.1| tRNA pseudouridine synthase B [Pusillimonas sp. T7-7]
gi|330427657|gb|AEC18991.1| tRNA pseudouridine synthase B [Pusillimonas sp. T7-7]
Length = 251
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 38/204 (18%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP SS+ + KR L K GH+GTLDP +G L+ C+ RAT++ A
Sbjct: 11 GVLLLDKPEGLSSNHALQRAKRALDARKAGHTGTLDPFATGLLVCCLGRATKISGKMLEA 70
Query: 93 GKEYISIFKLHSAVEN-------VAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAA 145
K Y++ +L ++ VA+A + + Q +K + E+E
Sbjct: 71 DKGYVATLRLGEETDSGDLTGNIVAQAPPEFKGVTQAEFEK-------VLPQFRGEIEQI 123
Query: 146 P--------NKKPTY------MKSNLISSDVTLST----------GIIWLKCQAGTYVRT 181
P + KP Y ++ + + VT+ I+++C GTY+RT
Sbjct: 124 PPMYSALKRDGKPLYEYARQGIELDRPARKVTIHALELLQFNGFEAEIFVECSKGTYIRT 183
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LG GA + LRR R G
Sbjct: 184 LAQDIGRQLGCGAHLNALRRTRVG 207
>gi|418055356|ref|ZP_12693411.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans 1NES1]
gi|353210938|gb|EHB76339.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans 1NES1]
Length = 306
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ LDKP+N +S + V I+R+ +K GHSGTLDP +G L + + AT+ V
Sbjct: 12 GWLVLDKPANMTSTQAVGIIRRVFNAQKAGHSGTLDPLATGILPIALGEATKTVSFAVDG 71
Query: 93 GKEYISIFKLHSAVEN------VAKASKK---KMMIKQGLLDKHGKPNENTPASYLAELE 143
K Y + + E V K S + + I+ L HG+ + PA +++
Sbjct: 72 EKAYRFTVRWGTETETDDTEGAVTKTSDQRPDRASIEALLSQFHGEIMQVPPAYSAIKVD 131
Query: 144 AAP-------------NKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
A +P ++ S + +T + +C GTYVR MG +L
Sbjct: 132 GARAYDLARDGETVVLEARPVFIDSLQLVDTPDAATSVFEARCGKGTYVRALARDMGRLL 191
Query: 191 GVGAQMIELRRNRSG 205
G +I LRR + G
Sbjct: 192 GCYGHVIALRRTQVG 206
>gi|296139441|ref|YP_003646684.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
gi|296027575|gb|ADG78345.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
Length = 297
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG + +DKP+ +SH+VVA +R + K GH+GTLDP +G L++ I+RAT+L+
Sbjct: 9 AGLIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLAL 68
Query: 92 AGKEYISIFKLHSAVE-NVAKASKKKMMIKQGLLDKH--------GKPNENTPASYLA-- 140
K Y + +L ++ + A+ GL D E P++ A
Sbjct: 69 TTKAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAIK 128
Query: 141 ----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
+L A P + + ++ D + ++C +GTYVR
Sbjct: 129 VDGKRAHQLVREGADVQLTARPVRVDEF-AAHAFRRDGDFLDVDVHVECSSGTYVRALAR 187
Query: 185 HMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 188 DLGAALGVGGHLTALRRTRVG 208
>gi|419709646|ref|ZP_14237114.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
gi|382943527|gb|EIC67841.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
Length = 298
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQ 90
RAG V +DKP+ +SH+VV+ +RI K GH+GTLDP +G L++ I+RAT+++
Sbjct: 7 RAGLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLT 66
Query: 91 SAGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
K Y + + + ++ ++ + ++ I+ + G + P+S A
Sbjct: 67 LTTKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQ-VPSSVSA 125
Query: 141 ------------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
EL A P + + + S L + + C +GTY+R
Sbjct: 126 IKVDGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLVDVDVEVDCSSGTYIRAL 185
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
G LGVG + LRR R G
Sbjct: 186 ARDAGAALGVGGHLTALRRTRVG 208
>gi|444403143|ref|ZP_21200258.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0008]
gi|444265085|gb|ELU71114.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0008]
Length = 292
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 31/208 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K S +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKESGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKH----GKPNENTPASYLA-- 140
GK Y L A V + + + L+D+ P P Y A
Sbjct: 63 GKIYEGEITLSYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|302554527|ref|ZP_07306869.1| tRNA pseudouridine synthase B [Streptomyces viridochromogenes DSM
40736]
gi|302472145|gb|EFL35238.1| tRNA pseudouridine synthase B [Streptomyces viridochromogenes DSM
40736]
Length = 301
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 31/204 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ +++AT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGK----PNE------ 132
KEY+ +L + + ASK + I G+ G P++
Sbjct: 70 EKEYLGTIRLGQNTLTDDAQGEITSATDASKVTREAIDAGIAKLTGDIMQVPSKVSAIKI 129
Query: 133 NTPASYLAELEAAPNKKPT----------YMKSNLISSDVT-LSTGIIWLKCQAGTYVRT 181
+ SY E + P Y + ++ D T + ++ + C +GTY+R
Sbjct: 130 DGVRSYKRAREGEEFEIPARPVTVSSFGVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRA 189
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 190 LARDLGADLGVGGHLTALRRTRVG 213
>gi|410476621|ref|YP_006743380.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae gamPNI0373]
gi|444387894|ref|ZP_21185895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS125219]
gi|444389672|ref|ZP_21187587.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS70012]
gi|444391981|ref|ZP_21189742.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS81218]
gi|444395211|ref|ZP_21192757.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0002]
gi|444397663|ref|ZP_21195146.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0006]
gi|444400555|ref|ZP_21197946.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0007]
gi|444404761|ref|ZP_21201703.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0009]
gi|444407284|ref|ZP_21203951.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0010]
gi|444417002|ref|ZP_21213067.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0360]
gi|444420389|ref|ZP_21216180.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0427]
gi|406369566|gb|AFS43256.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae gamPNI0373]
gi|444251307|gb|ELU57778.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS125219]
gi|444256135|gb|ELU62473.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS70012]
gi|444258530|gb|ELU64852.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0002]
gi|444260320|gb|ELU66628.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0006]
gi|444264237|gb|ELU70338.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS81218]
gi|444266049|gb|ELU72025.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0007]
gi|444270880|gb|ELU76631.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0010]
gi|444276218|gb|ELU81792.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0009]
gi|444284763|gb|ELU89880.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0360]
gi|444284820|gb|ELU89930.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0427]
Length = 292
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K S +SH+ V +++IL +K GH GTLDP G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKESGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 93 GKEYISIFKL-------HSAVENVAK----ASKKKMMIKQGLLDKHGKPNENTPASYLA- 140
GK Y L ++ E VA+ + + ++ + + G P P Y A
Sbjct: 63 GKIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTG-PITQIPPMYSAV 121
Query: 141 ---------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182
E+E P ++ T + +++ IS D L+ +KC GTY+RT
Sbjct: 122 KVNGRKLYEYARAGQEVE-RPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIEL-RRNRSGIQSEE 210
V +G LG A M L R + +G+Q E+
Sbjct: 181 SVDLGEKLGYAAHMSHLTRTSAAGLQLED 209
>gi|329929279|ref|ZP_08283032.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
gi|328936648|gb|EGG33091.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
Length = 303
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + + KP+ +SH+VVA ++ ++R ++ GH+GTLDP+ +G L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 93 GKEYISIFKLHSAVE------NVAKASKKKMMIKQGLLDK----HGKPNENTPASYLAEL 142
KEY ++ +L + + NV + + + + + L+ G+ ++ P ++
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFTGQISQVPPMYSAVKI 125
Query: 143 ------EAAPNKKPTYMKSNLIS-SDVTLS--------TGIIW-LKCQAGTYVRTYCVHM 186
E A K KS ++ ++ ++ T I + + C GTY+RT CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTDFDPEGEYTEISFRVLCSKGTYIRTLCVDI 185
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222
G LG+ + M++L R S +E L T Q F
Sbjct: 186 GRKLGLPSVMVKLVRTISAGITEAQCL-TLEQIEQF 220
>gi|347548714|ref|YP_004855042.1| putative tRNA pseudouridine 55 synthase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981785|emb|CBW85758.1| Putative tRNA pseudouridine 55 synthase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 304
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-----------GLLDKHGKPNENTP------ 135
GK Y++ L + A+ + +M K+ L GK + P
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKEIEEISAEELQAALTKLTGKITQIPPMFSAVK 121
Query: 136 --ASYLAELEAA------PNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTYC 183
L E A P+++ + D+ L+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARAGIEVERPSRQVDIYSLIRLDGDMALTETNPTFRLEISCGKGTYIRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFE 223
V +G +LG A M +L R RSG +ED L + M +
Sbjct: 182 VMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDEMMQ 221
>gi|405356585|ref|ZP_11025554.1| tRNA pseudouridine synthase B [Chondromyces apiculatus DSM 436]
gi|397090629|gb|EJJ21484.1| tRNA pseudouridine synthase B [Myxococcus sp. (contaminant ex DSM
436)]
Length = 289
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 28/198 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKPS P+S +VV ++ +LR +K GH+GTLDP +G L +C+ AT++
Sbjct: 3 GVLVIDKPSGPTSFDVVRQVRSLLRIKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEG 62
Query: 93 GKEYISIFKLHSAVENV---------AKASKKKMMIKQGLLDKHGKPNENTPASYLA--- 140
K Y + +L S + + A + + L ++ + P Y A
Sbjct: 63 DKAYDATVRLGSETDTLDAEGQVTAHAPVPALTPALIEAALARYRGTYDQIPPMYSAVKV 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E+E A + Y L+ D + + ++C G +VRT +G
Sbjct: 123 GGKRLYELARAGEEVERAARQVTVY---ELVLRDFSADRLQVSVRCSKGFFVRTLAQDVG 179
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA + LRR SG
Sbjct: 180 RALGCGAHLEALRRTASG 197
>gi|383484838|ref|YP_005393750.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320522|ref|YP_006016684.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|325335065|gb|ADZ11339.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|380459523|gb|AFD55207.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 232
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 28 EYIRAGYVNL-DKPSNPSSHEVVAWIKRILRCE------KTGHSGTLDPKTSGCLIVCID 80
E I+AG V L DKP + +S + V +K L+ E K GH+GTLDP+ +G L+VC
Sbjct: 4 EEIQAGQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTG 63
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL-----------LDKHGK 129
+AT+ + Q+A KEY + K+ V+ + +++ ++ Q + LD
Sbjct: 64 KATKTIPEIQNAPKEYHAEIKI--GVQTASYDTEEPEILPQDISTITKEQILETLDSFVG 121
Query: 130 PNENTPASYLA----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKC 173
+ TP + A E+E K Y N+ +V L + C
Sbjct: 122 EIDQTPPIFSAIKVDGERAYNLARAGEEVELKKRKTTIYFIDNI---EVDLPFVRFSVGC 178
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTY+R+ +G LGVGA + +LRR + G
Sbjct: 179 SKGTYIRSLAHDIGQALGVGAYLTQLRRTKIG 210
>gi|56708582|ref|YP_170478.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671053|ref|YP_667610.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis FSC198]
gi|254371211|ref|ZP_04987213.1| hypothetical protein FTBG_00980 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875444|ref|ZP_05248154.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717812|ref|YP_005306148.1| tRNA pseudouridine synthase B( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726415|ref|YP_005318601.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis TI0902]
gi|385795275|ref|YP_005831681.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
tularensis NE061598]
gi|421756215|ref|ZP_16193138.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 80700075]
gi|62901195|sp|Q5NER4.1|TRUB_FRATT RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|123359365|sp|Q14G67.1|TRUB_FRAT1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56605074|emb|CAG46187.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321386|emb|CAL09570.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
tularensis FSC198]
gi|151569451|gb|EDN35105.1| hypothetical protein FTBG_00980 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841443|gb|EET19879.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159810|gb|ADA79201.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
tularensis NE061598]
gi|377827864|gb|AFB81112.1| tRNA pseudouridine synthase B( ) [Francisella tularensis subsp.
tularensis TI0902]
gi|377829489|gb|AFB79568.1| tRNA pseudouridine synthase B( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085305|gb|EKM85450.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
tularensis 80700075]
Length = 302
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKVKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|422876681|ref|ZP_16923151.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1056]
gi|332361489|gb|EGJ39293.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1056]
Length = 292
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDETMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + ++ IS + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTGPISYEGEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGTKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|113868279|ref|YP_726768.1| tRNA pseudouridine synthase B [Ralstonia eutropha H16]
gi|113527055|emb|CAJ93400.1| tRNA pseudouridine synthase B [Ralstonia eutropha H16]
Length = 296
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 37 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEY 96
LDKP SS++ + KR+LR K GH+GTLDP +G L +C AT+ + A K Y
Sbjct: 4 LDKPLGLSSNDALVRAKRLLRAAKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEADKTY 63
Query: 97 ISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP--------NK 148
++ +L S + A + + +++ D E AS+L E+E P +
Sbjct: 64 DAVVRLGSR-SSTGDAEGELLDVREVTCDCAA--VEQALASFLGEIEQVPPMHSALKKDG 120
Query: 149 KPTY------------MKSNLISSDVTLSTGI-------IWLKCQAGTYVRTYCVHMGLV 189
+P Y + I S L + + + C GTY+RT +G
Sbjct: 121 RPLYEYARAGQTVERAARRVTIRSIALLECALPEAPSFTMRVTCSKGTYIRTLAEDIGEA 180
Query: 190 LGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
LG GA + LRR G + DG VT Q
Sbjct: 181 LGCGAHLTGLRRIAVGDLT-LDGAVTLEQ 208
>gi|403727352|ref|ZP_10947587.1| tRNA pseudouridine synthase B [Gordonia rhizosphera NBRC 16068]
gi|403203935|dbj|GAB91918.1| tRNA pseudouridine synthase B [Gordonia rhizosphera NBRC 16068]
Length = 300
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG V +DK ++ +SH+VV+ +++ + GH+GTLDP +G L++ I+RAT+L+
Sbjct: 9 AGLVIVDKDADMTSHDVVSRCRKLFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSL 68
Query: 92 AGKEYISIFKLHSAVEN-------VAKASKKKM---MIKQGLLDKHGKPNENTPASYLA- 140
K Y++ +L ++ + +++A + I +G+ G + PA A
Sbjct: 69 TTKSYVATIRLGASTDTDDREGQIISRADASHLSSDRIAEGVAALTGDIAQ-VPAKVSAI 127
Query: 141 -----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
LEA P + + ++D + + C AGTY+R+
Sbjct: 128 KVDGRRAHKLVRSGAEFNLEARPVTVSRFDILGIGATDDGFVDVDVEVDCSAGTYIRSLA 187
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR G
Sbjct: 188 RDLGAGLGVGGHLTALRRTAVG 209
>gi|62260132|gb|AAX77881.1| unknown protein [synthetic construct]
Length = 337
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 36 GVVVINKVKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 95
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 96 DKEYIATIRL--GIETDSGDAEGEIIAKSINIPELSAEYLETVLAKFRGDVVQIPPMYSA 153
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 154 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 213
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 214 KTLGCGGHLIALQRTQSG 231
>gi|291454481|ref|ZP_06593871.1| tRNA pseudouridine synthase B [Streptomyces albus J1074]
gi|359148622|ref|ZP_09181748.1| tRNA pseudouridine synthase B [Streptomyces sp. S4]
gi|421744585|ref|ZP_16182557.1| tRNA pseudouridine 55 synthase [Streptomyces sp. SM8]
gi|291357430|gb|EFE84332.1| tRNA pseudouridine synthase B [Streptomyces albus J1074]
gi|406687003|gb|EKC91052.1| tRNA pseudouridine 55 synthase [Streptomyces sp. SM8]
Length = 301
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVVVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASK-KKMMIKQGLLDKHGK----PNE------ 132
KEY+ +L + A AS + + G+ + G P++
Sbjct: 70 EKEYLGTIRLGQTTVTDDAEGEITASADASGIGRAAVDAGVAELTGDIMQVPSKVSAIKI 129
Query: 133 NTPASYLA-------ELEAAPNKKPTY----MKSNLISSDVTLSTGIIWLKCQAGTYVRT 181
+ SY E+ A P ++ ++ + + + ++ + C +GTY+R
Sbjct: 130 DGKRSYTRVREGEEFEIPARPVTVSSFTVYDVREDKAADGTPVLDLVVSVVCSSGTYIRA 189
Query: 182 YCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 190 LARDLGASLGVGGHLTALRRTRVG 213
>gi|21224057|ref|NP_629836.1| tRNA pseudouridine synthase B [Streptomyces coelicolor A3(2)]
gi|13959606|sp|Q9Z528.1|TRUB_STRCO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|4464271|emb|CAB37474.1| probable tRNA pseudouridine synthase [Streptomyces coelicolor
A3(2)]
Length = 301
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 33/205 (16%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKL---------HSAVENVAKASKKK-MMIKQGLLDKHGKPNENTPASYLA-- 140
KEY+ +L + ASK I G+ + G + P+ A
Sbjct: 70 EKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTWEAIDAGVAELSGDIMQ-VPSKVSAIK 128
Query: 141 ----------------ELEAAP---NKKPTYMKSNLISSDVT-LSTGIIWLKCQAGTYVR 180
E+ A P + Y + ++ D T + ++ + C +GTY+R
Sbjct: 129 IKGVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVVSVTCSSGTYIR 188
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR R G
Sbjct: 189 ALARDLGAGLGVGGHLTALRRTRVG 213
>gi|320530114|ref|ZP_08031184.1| tRNA pseudouridine synthase B [Selenomonas artemidis F0399]
gi|320137547|gb|EFW29459.1| tRNA pseudouridine synthase B [Selenomonas artemidis F0399]
Length = 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++N+ KP SSH+V+ ++RI + ++ GH+GTLDP +G L V + RA RL++ + A
Sbjct: 3 GFINVLKPPGMSSHDVIDVVRRIFKQKRVGHAGTLDPAAAGVLPVALGRAARLIEYMEIA 62
Query: 93 GKEYISIFKLHSAVEN-----------VAKASKKKMMIKQGLLDKHGKPNENTP------ 135
K Y + A + A + + ++ + L+D GK + P
Sbjct: 63 DKSYRAELSFGCATDTGDVYGTVTESLPAFSFPPEDVVIKTLVDFIGKIAQRPPVHSAIK 122
Query: 136 -----ASYLA----ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
A LA E+E P ++ L++ + + + + C GTY+R+ C+ +
Sbjct: 123 IGGMRAYDLARRGTEIE-VPVRRVEIYGVALLAYNPARHSILFDVDCSKGTYIRSLCMDI 181
Query: 187 GLVLGVGAQMIELRRNRSG 205
G LG+ A + L R R G
Sbjct: 182 GAKLGLPALLRFLLRTRVG 200
>gi|189485241|ref|YP_001956182.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|226708678|sp|B1GZN9.1|TRUB_UNCTG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|170287200|dbj|BAG13721.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 230
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + LDKP +S + V IK++L EKTGH GTLDP ++G L+V + +AT+L
Sbjct: 10 GLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKFMKK 69
Query: 93 GKEYISIFKLHSAVE-----------------NVAKASKKKMMIKQGLLD--------KH 127
K Y+S F L + N+ K K M + + K+
Sbjct: 70 DKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSALKY 129
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
A E+E P +K T K ++S D + + ++C +GTY+RT +G
Sbjct: 130 NGKKLCELARQGIEVERKP-RKVTIKKFEVLSYDGDIVK--VRIECSSGTYIRTLAQDLG 186
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
VL GA + LRR + I +D L F+ + I+ +
Sbjct: 187 NVLKCGATVKTLRREKIDIFDIKDAL-RFKDTDSADKIIKKLI 228
>gi|404496451|ref|YP_006720557.1| tRNA pseudouridine 55 synthase [Geobacter metallireducens GS-15]
gi|418064823|ref|ZP_12702199.1| tRNA pseudouridine synthase B [Geobacter metallireducens RCH3]
gi|91208081|sp|Q39VA3.1|TRUB_GEOMG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|78194054|gb|ABB31821.1| tRNA pseudouridine 55 synthase [Geobacter metallireducens GS-15]
gi|373563096|gb|EHP89297.1| tRNA pseudouridine synthase B [Geobacter metallireducens RCH3]
Length = 304
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP+ +SH+++A ++RIL +K GH+GTLDP +G L V + T+ + A
Sbjct: 3 GFIVIDKPAGLTSHDIIARVRRILGQKKAGHTGTLDPFATGVLPVAMGEGTKAIPFLDEA 62
Query: 93 GKEYISIFKLHSA---------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA--- 140
KEY + L +A VE ++ + + + + + P Y A
Sbjct: 63 VKEYRATMVLGAATDTQDCTGRVEKEGDWTRLSVEAVREVFGAYIGKCKQIPPMYSAVKQ 122
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E+E P + +LI + L + C GTYVRT MG
Sbjct: 123 GGVPLYRLARKGHEVEREPRDIEIH---SLIIDRMELPRIEFTVSCSRGTYVRTLAHDMG 179
Query: 188 LVLGVGAQMIELRRNRSG 205
LG GA + LRR RSG
Sbjct: 180 ERLGCGAHLSALRRTRSG 197
>gi|333991189|ref|YP_004523803.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
gi|333487157|gb|AEF36549.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
Length = 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 40/206 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKP+ +SH+VVA +R K GH+GTLDP +G L+V I+RAT+++ ++
Sbjct: 4 GLVVVDKPAGITSHDVVARCRRFFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTTS 63
Query: 93 GKEYISIFKL----------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA------ 136
K Y + +L ++ V+ I + + G + A
Sbjct: 64 SKSYAATIRLGQTTSTEDAEGEVLQTVSADHLTDSQIAEAIAGLRGDIAQVPSAVSAIKV 123
Query: 137 ----SY-------LAELEAAPNKKPTY------MKSNLISSDVTLSTGIIWLKCQAGTYV 179
SY EL A P + + + I DV + C AGTY+
Sbjct: 124 SGKRSYQLAREGNAVELPARPVRIERFELLDARRAGDFIDLDV-------EVDCSAGTYI 176
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR R+G
Sbjct: 177 RALARDLGDELGVGGHLTALRRTRAG 202
>gi|422823810|ref|ZP_16871998.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|422826124|ref|ZP_16874303.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|422855744|ref|ZP_16902402.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|422862832|ref|ZP_16909464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|422865718|ref|ZP_16912343.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
gi|324993137|gb|EGC25057.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|324995560|gb|EGC27472.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|327461405|gb|EGF07736.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|327474040|gb|EGF19453.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|327489263|gb|EGF21056.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
Length = 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ +S + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPVSYEGEQARFCFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|376254560|ref|YP_005143019.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae PW8]
gi|372117644|gb|AEX70114.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae PW8]
Length = 300
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP +SH+VV+ I+R +K GH+GTLDP +G L++ ++R T+ + +
Sbjct: 8 SGLVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVA 67
Query: 92 AGKEYISIFKLHSAV-------ENVAKASKKKMM------IKQGLLDKHGKPNENTPASY 138
+ K Y + +L +A E +A AS ++ I + G + A
Sbjct: 68 STKSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVS 127
Query: 139 LAELEAA--------------PNKKPTYMKSNL--ISSDVTLSTGIIWLKCQAGTYVRTY 182
+++ P + T + ++ I D + + C +GTY+R+
Sbjct: 128 AIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSL 187
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR + G
Sbjct: 188 ARDLGEELGVGGHLTALRRTQVG 210
>gi|376243074|ref|YP_005133926.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae CDCE
8392]
gi|376248757|ref|YP_005140701.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC04]
gi|376251556|ref|YP_005138437.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC03]
gi|376257370|ref|YP_005145261.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae VA01]
gi|376290674|ref|YP_005162921.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae C7
(beta)]
gi|372104070|gb|AEX67667.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae C7
(beta)]
gi|372106316|gb|AEX72378.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae CDCE
8392]
gi|372113060|gb|AEX79119.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC03]
gi|372115325|gb|AEX81383.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC04]
gi|372119887|gb|AEX83621.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae VA01]
Length = 300
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP +SH+VV+ I+R +K GH+GTLDP +G L++ ++R T+ + +
Sbjct: 8 SGLVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVA 67
Query: 92 AGKEYISIFKLHSAV-------ENVAKASKKKMM------IKQGLLDKHGKPNENTPASY 138
+ K Y + +L +A E +A AS ++ I + G + A
Sbjct: 68 STKSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVS 127
Query: 139 LAELEAA--------------PNKKPTYMKSNL--ISSDVTLSTGIIWLKCQAGTYVRTY 182
+++ P + T + ++ I D + + C +GTY+R+
Sbjct: 128 AIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSL 187
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR + G
Sbjct: 188 ARDLGEELGVGGHLTALRRTQVG 210
>gi|376284977|ref|YP_005158187.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 31A]
gi|376293475|ref|YP_005165149.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC02]
gi|371578492|gb|AEX42160.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 31A]
gi|372110798|gb|AEX76858.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC02]
Length = 300
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP +SH+VV+ I+R +K GH+GTLDP +G L++ ++R T+ + +
Sbjct: 8 SGLVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVA 67
Query: 92 AGKEYISIFKLHSAV-------ENVAKASKKKMM------IKQGLLDKHGKPNENTPASY 138
+ K Y + +L +A E +A AS ++ I + G + A
Sbjct: 68 STKSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVS 127
Query: 139 LAELEAA--------------PNKKPTYMKSNL--ISSDVTLSTGIIWLKCQAGTYVRTY 182
+++ P + T + ++ I D + + C +GTY+R+
Sbjct: 128 AIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSL 187
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR + G
Sbjct: 188 ARDLGKELGVGGHLTALRRTQVG 210
>gi|217964525|ref|YP_002350203.1| tRNA pseudouridine synthase B [Listeria monocytogenes HCC23]
gi|386008099|ref|YP_005926377.1| tRNA pseudouridine synthase B [Listeria monocytogenes L99]
gi|386026700|ref|YP_005947476.1| tRNA pseudouridine synthase B [Listeria monocytogenes M7]
gi|217333795|gb|ACK39589.1| tRNA pseudouridine synthase B [Listeria monocytogenes HCC23]
gi|307570909|emb|CAR84088.1| tRNA pseudouridine synthase B [Listeria monocytogenes L99]
gi|336023281|gb|AEH92418.1| tRNA pseudouridine synthase B [Listeria monocytogenes M7]
Length = 304
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + L K +SH+ V +++IL +K GH+GTLDP+ G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIK----------QGLLDKHGKPNENTPASYLA-- 140
GK Y++ L + A+ + +M K Q L K P + A
Sbjct: 63 GKVYVAEITLGKST-TTEDATGETVMTKELADISADELQAALTKLTGKITQIPPMFSAVK 121
Query: 141 --------------ELEAAPNKKPTYMKSNLISSDVTLS----TGIIWLKCQAGTYVRTY 182
E+E + Y + L S TL+ T + + C GTY+RT
Sbjct: 122 VNGKKLYEYARTGIEVERPSRQVDIYSLTRLDGS-ATLNEANPTFQLEISCGKGTYIRTL 180
Query: 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
V +G +LG A M +L R RSG +ED L + M + S+++
Sbjct: 181 AVMVGELLGYPAHMSKLERTRSGFFKKEDCLKLAEIDEMMQASDSSFL 228
>gi|422879086|ref|ZP_16925552.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|422928932|ref|ZP_16961874.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|422931904|ref|ZP_16964835.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
gi|332366480|gb|EGJ44228.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|339615796|gb|EGQ20464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|339619337|gb|EGQ23918.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
Length = 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKH-----GKPNENTP------ 135
GK Y L A ++ + + ++++ L+D+ G+ + P
Sbjct: 63 GKIYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 136 --ASYLAELEAAPNK--KP-------TYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCV 184
L E A K +P ++ +++ IS + + +KC GTYVRT V
Sbjct: 123 VNGRKLYEYARAGQKVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 185 HMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G LG + M +L R S S +D L
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSVDDAL 211
>gi|313207475|ref|YP_004046652.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|416110452|ref|ZP_11592067.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|442315332|ref|YP_007356635.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
gi|312446791|gb|ADQ83146.1| tRNA pseudouridine synthase B [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|315023375|gb|EFT36385.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|441484255|gb|AGC40941.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
Length = 239
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 28 EYIRAGYVNL-DKPSNPSSHEVVAWIKRILRCE------KTGHSGTLDPKTSGCLIVCID 80
E I+AG V L DKP + +S + V +K L+ E K GH+GTLDP+ +G L+VC
Sbjct: 11 EEIQAGQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTG 70
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL-----------LDKHGK 129
+AT+ + Q+A KEY + K+ V+ + +++ ++ Q + LD
Sbjct: 71 KATKTIPEIQNAPKEYHAEIKI--GVQTASYDTEEPEILPQDISTITKEQILETLDSFVG 128
Query: 130 PNENTPASYLA----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKC 173
+ TP + A E+E K Y N+ +V L + C
Sbjct: 129 EIDQTPPIFSAIKVDGERAYNLARAGEEVELKKRKTTIYFIDNI---EVDLPFVRFSVGC 185
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTY+R+ +G LGVGA + +LRR + G
Sbjct: 186 SKGTYIRSLAHDIGQALGVGAYLTQLRRTKIG 217
>gi|184201248|ref|YP_001855455.1| tRNA pseudouridine synthase B [Kocuria rhizophila DC2201]
gi|183581478|dbj|BAG29949.1| tRNA pseudouridine synthase TruB [Kocuria rhizophila DC2201]
Length = 379
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 109/259 (42%), Gaps = 59/259 (22%)
Query: 5 LNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHS 64
+N R + +P P L R AG V +DKP +SH+VVA ++R+ K GH+
Sbjct: 1 MNARQDVPSPAPS----LPRV------AGLVVVDKPLGWTSHDVVARMRRLAGTRKVGHA 50
Query: 65 GTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSA-VENVAKASKKKMMIKQGL 123
GTLDP SG L++ +++AT+L+ K Y + +L +A V + A+ + + L
Sbjct: 51 GTLDPAASGVLVIGVEKATKLLTWVTGTDKTYRAGIRLGAATVTDDAEGDVTRTAPPERL 110
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS-----------DVTLST------ 166
G +E A+ +A+L + P+ + + + DVTL
Sbjct: 111 A---GTTDEQVLAA-VAQLTGEIQQVPSAVSAIKVDGKRSYARVRGGEDVTLPARPVTVS 166
Query: 167 -----GI---------------IWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGI 206
GI + C +GTYVR +G LGVG + LRR R G
Sbjct: 167 EFAVHGIRRVEAADGQAFIDVDATVTCSSGTYVRALARDLGEALGVGGHLTALRRTRVGT 226
Query: 207 QSEEDGLVTFRQEHMFEHI 225
T Q H E +
Sbjct: 227 -------FTLDQAHTLEEL 238
>gi|329936651|ref|ZP_08286358.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
gi|329303881|gb|EGG47764.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
Length = 301
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 45/211 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I R + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 69
Query: 93 GKEYISIFKLHSA-----VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
KEY+ +L + E AS I + + E A+ ++ P+
Sbjct: 70 EKEYLGTVRLGQSTLTDDAEGEITASADASAITR-------EAVEAGVAALTGDIMQVPS 122
Query: 148 K-------------------------KPTYMKSNLISS--DVTLSTG------IIWLKCQ 174
K +P + S + D G ++ + C
Sbjct: 123 KVSAIKINGVRSYKRARDGEEFDIPARPVTVSSFTLHDVRDAVAENGTPVLDLVVSVVCS 182
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+GTY+R +G LGVG + LRR R G
Sbjct: 183 SGTYIRALARDLGAGLGVGGHLTALRRTRVG 213
>gi|312867761|ref|ZP_07727967.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0405]
gi|311096824|gb|EFQ55062.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0405]
Length = 309
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 34/220 (15%)
Query: 27 QEYIRA----GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82
QE RA G +N+ K + +SH+VV +++IL +K GH GTLDP G L + + +A
Sbjct: 4 QELERANQMDGIINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKA 63
Query: 83 TRLVKSQQSAGKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----E 132
TR+V+ Q GK Y L A V + + + + G +D+ E
Sbjct: 64 TRMVEFMQDEGKVYEGEITLGFSTTTEDASGEVVEGTPVEAPLDAGEVDRMIAQMVGEIE 123
Query: 133 NTPASYLA----------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKC 173
P Y A E+E P ++ T + +++ IS + L+ +KC
Sbjct: 124 QVPPMYSAVKVNGRKLYEYARAGEEVE-RPVRQVTIYDFTRTSEISYEGGLARFRFRVKC 182
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
GTY+RT V +G LG A M L R + S ED L
Sbjct: 183 SKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEDAL 222
>gi|358445329|ref|ZP_09155939.1| tRNA pseudouridylate synthase B [Corynebacterium casei UCMA 3821]
gi|356608775|emb|CCE54184.1| tRNA pseudouridylate synthase B [Corynebacterium casei UCMA 3821]
Length = 287
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 24/198 (12%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
+G V +DKP+ +SH+VVA I+R K GH+GTLDP +G LI+ I+R T+ + +
Sbjct: 4 SGLVVVDKPAGMTSHDVVARIRREFGTRKVGHAGTLDPMATGVLILGIERGTKFLAHMVA 63
Query: 92 AGKEYISIFKLHSAV-------ENVAKASKKKMMIKQGLLDKHGKPNE--NTPASYLA-- 140
A K Y + +L ++ E + + S + + +Q L + + PA A
Sbjct: 64 ATKAYDATIRLGASTTTDDFEGEVINQTSAEHITDEQALAEIKKLTGDIMQKPAKVSAIK 123
Query: 141 -------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
E P + T + ++ +S + ++C +GTY+R+ +G
Sbjct: 124 IDGKRAYQRVRDGEEVDIPARPVTVSRFDVNASRTEPRKFDVTVECSSGTYIRSLARDLG 183
Query: 188 LVLGVGAQMIELRRNRSG 205
LGVG + LRR G
Sbjct: 184 DSLGVGGHLTALRRTAVG 201
>gi|406836857|ref|ZP_11096451.1| tRNA pseudouridine synthase B [Schlesneria paludicola DSM 18645]
Length = 308
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 32/202 (15%)
Query: 27 QEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLV 86
+E G +N+DKP+ +S ++V + R++R K GH+GTLDP +G L+VC+ ATRL+
Sbjct: 7 EEMTYCGVLNVDKPAGVTSRDIVNQVVRLVRPAKAGHAGTLDPLATGVLVVCVGHATRLI 66
Query: 87 KSQQSAGKEYISIFKLH--SAVENVAK--------ASKKKMMIKQGLLDKHGKPNENTP- 135
Q K Y+ F L S ++V + K ++ L G+ ++ P
Sbjct: 67 NLVQEGRKRYLGRFALGQTSDTDDVTGNLQAGGDWSGITKAQLQAELTQFVGRIDQTPPQ 126
Query: 136 ----------ASYLA------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
A LA EL A P + + + L + C GTY+
Sbjct: 127 FSAVHVQGQRAYDLARRGVTVELAARPVDIFSLELTAFQPPEFELD-----VICGGGTYI 181
Query: 180 RTYCVHMGLVLGVGAQMIELRR 201
R+ +G LG GA M +LRR
Sbjct: 182 RSIGRDLGARLGCGALMTDLRR 203
>gi|336427125|ref|ZP_08607129.1| hypothetical protein HMPREF0994_03135 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336009978|gb|EGN39965.1| hypothetical protein HMPREF0994_03135 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 298
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 41/212 (19%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K + +SH+VVA ++ I R +K GH+GTLDP G L VC+ ATRL
Sbjct: 4 GILNVYKEAGYTSHDVVAKLRGICRQKKIGHTGTLDPDAVGVLPVCLGNATRLCDMLTDK 63
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA-----SYLAELEAAP- 146
KEY ++ L + + K +L++H E A S+L E P
Sbjct: 64 SKEYEAVLLLGKVTDTQDISGK--------VLEEHPVLMEEEQAVEAVLSFLGSYEQIPP 115
Query: 147 -------NKKPTYM------------------KSNLISSDVTLSTGIIWLKCQAGTYVRT 181
N K Y + +++S V L + C GTY+RT
Sbjct: 116 MYSALKVNGKKLYELARAGKEVERAGRPVEIHRIDILS--VALPEITFRVACSKGTYIRT 173
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
C +G LG G M L+R R G + +D L
Sbjct: 174 LCHDIGRKLGCGGTMKSLKRTRVGTFAIDDAL 205
>gi|358067659|ref|ZP_09154136.1| hypothetical protein HMPREF9333_01017 [Johnsonella ignava ATCC
51276]
gi|356694138|gb|EHI55802.1| hypothetical protein HMPREF9333_01017 [Johnsonella ignava ATCC
51276]
Length = 335
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 50/229 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ K P+SH+VVA ++RI + ++ GH+GTLDP +G L VC+ AT+L +
Sbjct: 4 GIINIFKEKGPTSHDVVARLRRIFKMKRIGHTGTLDPDATGVLPVCLGNATKLCELMTDK 63
Query: 93 GKEYISIFKL-------------------------HSAVENVAKASKKKMMIK------- 120
KEY ++ L ++N+ + M I
Sbjct: 64 TKEYRAVMILGITTDTQDISGKITKNCIRLPELSKEDIIKNIMYFKGEYMQIPPMYSAIK 123
Query: 121 ---QGLLD--KHGKPNENTP----------ASYLAELEAAP-NKKPTYMKSNLISSDVTL 164
+ L+D + G + P + E E N+ P KS + D+
Sbjct: 124 VGGRKLVDLARQGIEIKREPRKVEIFDIEVEDIITEAEGIKLNRTPE--KSPAGAYDIPF 181
Query: 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
II + C GTY+RT C +G LG GA M L R RSG ED +
Sbjct: 182 PRIIIKVCCSKGTYIRTLCHDIGERLGTGACMESLVRIRSGEFRIEDSI 230
>gi|295836225|ref|ZP_06823158.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB74]
gi|197699259|gb|EDY46192.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB74]
Length = 302
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA ++ I + GH+GTLDP +G L++ + RAT+L+
Sbjct: 11 GLVIVDKPSGFTSHDVVAKMRGIAGTRRVGHAGTLDPMATGVLVLGVQRATKLLGHLALT 70
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP 146
KEY+ +L A + A+ + ++ + E A ++ P
Sbjct: 71 EKEYVGTIRLGQDTVTDDAEGEITSAADASGVAREAI--------EAEVAKLTGDILQVP 122
Query: 147 NK--------KPTYMK----------------SNLISSDVTLSTG---------IIWLKC 173
+K K +Y + S+ + DV T ++ + C
Sbjct: 123 SKVSAIKIDGKRSYKRAREGEDFEIPARPVTVSSFLVHDVRAETAPDGTPVRDLLVSVTC 182
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+GTY+R +G LGVG + LRR R G
Sbjct: 183 SSGTYIRALARDIGAALGVGGHLTALRRTRVG 214
>gi|407983204|ref|ZP_11163861.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
gi|407375097|gb|EKF24056.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
Length = 293
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQS 91
AG V +DKP+ +SH+VV +RI K GH+GTLDP +G L+V IDRAT+++ +
Sbjct: 4 AGLVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKILGLLTA 63
Query: 92 AGKEYISIFKLHSA----------VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
K Y + +L ++ V+ S I + G+ ++ A +
Sbjct: 64 TDKSYTATIRLGQTTSTDDAEGELLQEVSARSVTDEQIGAAVGALRGEIDQVPSAVSAIK 123
Query: 142 LEA------APNKKPTYMKSNLISSDVTLSTGI----------IWLKCQAGTYVRTYCVH 185
++ A + +K+ + + TGI + + C +GTY+R
Sbjct: 124 VDGKRAYQLARQGRSVELKARRVRIERFEVTGIRRHGEVVDVDVEVDCSSGTYIRALARD 183
Query: 186 MGLVLGVGAQMIELRRNRSG 205
+G LGVG + LRR G
Sbjct: 184 IGAGLGVGGHLTALRRTAVG 203
>gi|422821453|ref|ZP_16869646.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
gi|324990881|gb|EGC22816.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
Length = 292
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ I + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPIYYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S ED L
Sbjct: 182 VDLGAKLGFSSHMSQLTRTSSAGMSLEDAL 211
>gi|89895260|ref|YP_518747.1| hypothetical protein DSY2514 [Desulfitobacterium hafniense Y51]
gi|89334708|dbj|BAE84303.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 300
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV ++RIL K GH+GTLDP+ +G L +C+ +ATRL + +
Sbjct: 9 GVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 68
Query: 93 GKEYIS--IFKLHSAVENVA-----------KASKKKMMIKQGLLDKHGKPNENTPASYL 139
GK Y IF + + ++ + A + +I Q L P + +
Sbjct: 69 GKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVKHQ 128
Query: 140 AE---------LEAAPNKKPTYMKSNLISSDVT--LSTGIIWLKCQAGTYVRTYCVHMGL 188
+ LE + ++ + + I + C GTY+RT C MG
Sbjct: 129 GKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDMGQ 188
Query: 189 VLGVGAQMIELRRNRSG 205
LG GA M L R RSG
Sbjct: 189 TLGCGAHMSALIRLRSG 205
>gi|422851841|ref|ZP_16898511.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
gi|325694319|gb|EGD36233.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
Length = 292
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +NL K + +SH+ V +++IL+ +K GH GTLDP G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 93 GKEYISIFKL------HSAVENVAKASKKKMMIKQGLLDKHGKPN----ENTPASYLA-- 140
GK Y L A ++ + + ++++ L+D+ + P Y A
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDETMESMTGEIRQIPPMYSAVK 122
Query: 141 --------------ELEAAPNKKPT---YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
E+E P ++ T + +++ I+ + + +KC GTYVRT
Sbjct: 123 VNGRKLYEYARAGQEVE-RPERQVTIYSFERTSPIAYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 184 VHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
V +G LG + M +L R S S +D L
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|219669691|ref|YP_002460126.1| tRNA pseudouridine synthase B [Desulfitobacterium hafniense DCB-2]
gi|219539951|gb|ACL21690.1| tRNA pseudouridine synthase B [Desulfitobacterium hafniense DCB-2]
Length = 294
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G +N+ KP +S +VV ++RIL K GH+GTLDP+ +G L +C+ +ATRL + +
Sbjct: 3 GVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 62
Query: 93 GKEYIS--IFKLHSAVENVA-----------KASKKKMMIKQGLLDKHGKPNENTPASYL 139
GK Y IF + + ++ + A + +I Q L P + +
Sbjct: 63 GKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVKHQ 122
Query: 140 AE---------LEAAPNKKPTYMKSNLISSDVT--LSTGIIWLKCQAGTYVRTYCVHMGL 188
+ LE + ++ + + I + C GTY+RT C MG
Sbjct: 123 GKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDMGQ 182
Query: 189 VLGVGAQMIELRRNRSG 205
LG GA M L R RSG
Sbjct: 183 TLGCGAHMSALIRLRSG 199
>gi|89255959|ref|YP_513321.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica LVS]
gi|115314442|ref|YP_763165.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica OSU18]
gi|156501955|ref|YP_001428020.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254367316|ref|ZP_04983342.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
holarctica 257]
gi|290954596|ref|ZP_06559217.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica URFT1]
gi|422938411|ref|YP_007011558.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica FSC200]
gi|423050290|ref|YP_007008724.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica F92]
gi|122325532|sp|Q0BN06.1|TRUB_FRATO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|122501055|sp|Q2A4N1.1|TRUB_FRATH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189036480|sp|A7NAR1.1|TRUB_FRATF RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|89143790|emb|CAJ78995.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
holarctica LVS]
gi|115129341|gb|ABI82528.1| pseudouridylate synthase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253132|gb|EBA52226.1| tRNA pseudouridine synthetase B [Francisella tularensis subsp.
holarctica 257]
gi|156252558|gb|ABU61064.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293562|gb|AFT92468.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica FSC200]
gi|421951012|gb|AFX70261.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
holarctica F92]
Length = 302
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V ++K + SS++V+ +K + +K GH+GTLDP +G L +C RAT++ + A
Sbjct: 10 GVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 93 GKEYISIFKLHSAVENVAKASKKKMMIKQ-GLLDKHGKPNENTPASYLAELEAAP----- 146
KEYI+ +L +E + ++ +++ K + + + E A + ++ P
Sbjct: 70 DKEYIATIRL--GIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQIPPMYSA 127
Query: 147 ---NKKPTY----------MKSNLISS------DVTLSTGIIWLKCQAGTYVRTYCVHMG 187
N +P Y +KS I + + + I +KC GTY+R+ + +G
Sbjct: 128 LKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 188 LVLGVGAQMIELRRNRSG 205
LG G +I L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|407452880|ref|YP_006724605.1| pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
gi|403313864|gb|AFR36705.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
Length = 232
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 28 EYIRAGYVNL-DKPSNPSSHEVVAWIKRILRCE------KTGHSGTLDPKTSGCLIVCID 80
E I+AG V L DKP + +S + V +K L+ E K GH+GTLDP+ +G L+VC
Sbjct: 4 EEIQAGQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTG 63
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL-----------LDKHGK 129
+AT+ + Q+A KEY + K+ V+ + +++ ++ Q + LD
Sbjct: 64 KATKTIPEIQNAPKEYHAEIKI--GVQTASYDTEEPEILPQDISTITKEQILETLDSFVG 121
Query: 130 PNENTPASYLA----------------ELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKC 173
+ TP + A E+E K Y N+ ++ L + C
Sbjct: 122 EIDQTPPIFSAIKVDGERAYNLARAGEEVELKKRKTTIYFIDNI---EIDLPFVRFSVGC 178
Query: 174 QAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
GTY+R+ +G LGVGA + +LRR + G
Sbjct: 179 SKGTYIRSLAHDIGQALGVGAYLTQLRRTKIG 210
>gi|375100110|ref|ZP_09746373.1| tRNA pseudouridine 55 synthase [Saccharomonospora cyanea NA-134]
gi|374660842|gb|EHR60720.1| tRNA pseudouridine 55 synthase [Saccharomonospora cyanea NA-134]
Length = 319
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 37/206 (17%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G + +DKP +SH+VVA +R LR + GH+GTLDP +G L++ ++RAT+L+
Sbjct: 30 GLLIVDKPGGMTSHDVVAKARRFLRTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALD 89
Query: 93 GKEYISIFKLHSA---------------VENVAKASKKKMMIKQGLL--DKHGKPNE--- 132
K Y++ L +A V VA S + L D KP+
Sbjct: 90 RKTYLATIALGAATTTDDAEGEITSRADVSAVAGVSDADIAAGIAALTGDILQKPSAVSA 149
Query: 133 ---NTPASYLAELEAA-----PNKKPTYMKSNLISS-----DVTLSTGIIWLKCQAGTYV 179
N +Y A + A P + T + +L+++ V L + + C +GTYV
Sbjct: 150 VKVNGKRAY-ARVRAGEEVDLPARPVTVHRFDLLATRRETDRVELD---VMVDCSSGTYV 205
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSG 205
R +G LGVG + LRR G
Sbjct: 206 RALARDLGAALGVGGHLAALRRTSVG 231
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,680,253,880
Number of Sequences: 23463169
Number of extensions: 144099668
Number of successful extensions: 361267
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4549
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 351829
Number of HSP's gapped (non-prelim): 8316
length of query: 232
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 94
effective length of database: 9,121,278,045
effective search space: 857400136230
effective search space used: 857400136230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)