BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1176
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila
melanogaster GN=Nop60B PE=1 SV=1
Length = 508
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 163/216 (75%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLN+R+NHYTPL G SPL R I+EY++ G++NLDKPSNPSSHEVVAWIK+IL+ EK
Sbjct: 56 NFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQSAGKEY++IFKLH AVE+VAK ++
Sbjct: 116 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESVAK-------VR 168
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
QGL G + P + + + T S L+ D T + G+ W+ C+AG+Y+R
Sbjct: 169 QGLEKLRGALFQRPPLISAVKRQL---RVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GLVLGVG QM+ELRR RSGIQSE DG+VT
Sbjct: 226 TMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTM 261
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKP 150
KAS KK +I G LDK G+PNENTP +L KKP
Sbjct: 383 KASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKP 422
>sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis briggsae GN=CBG18316 PE=3 SV=1
Length = 445
Score = 244 bits (623), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 148/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDERK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P ++ ++ + Y ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPP--LISAVKRQLRIRTVY-ENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LG G QM ELRRNRSGI E + +VT
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTM 251
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
ASKKK M+K GLLDK GKPN TP S+ E
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNITTPKSWAKE 403
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CBF5 PE=1
SV=1
Length = 483
Score = 244 bits (623), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 153/221 (69%), Gaps = 20/221 (9%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEK
Sbjct: 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEK 87
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH A+++ +K +
Sbjct: 88 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKD-----EKDL--- 139
Query: 121 QGLLDKHGKPNENTPASYLAE--LEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQA 175
G+ EN + L +A ++ T +SNLI D + G+ W C+A
Sbjct: 140 -------GRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEA 192
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
GTY+RT CVH+G++LGVG M ELRR RSG SE D +VT
Sbjct: 193 GTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTL 233
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
A KKK M G LDK+G+ NENTP + E
Sbjct: 356 AQKKKQMKADGKLDKYGRVNENTPEQWKKE 385
>sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis elegans GN=K01G5.5 PE=3 SV=1
Length = 445
Score = 244 bits (622), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 151/228 (66%), Gaps = 10/228 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKLNVRTNHYTP G SPL+R I+ YI +G+ NLDKPSNPSSHEVV+WIKRILRCEK
Sbjct: 46 NYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEK 105
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK SGCLIVCIDR TRL KSQQ AGKEYI IFKLH VE+ K +K
Sbjct: 106 TGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRK-------VK 158
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
Q L G + P + + + T ++ I D GI C++GTYVR
Sbjct: 159 QALEKLTGALFQRPPLISAVKRQL---RIRTVYENKFIEYDPAQQMGIFNCICESGTYVR 215
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVST 228
T CVH+GL+LG G QM ELRRNRSGI E + +VT ++++ T
Sbjct: 216 TICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK 149
ASKKK M+K GLLDK GKPN+ TP S+ E KK
Sbjct: 374 ASKKKQMVKDGLLDKFGKPNDTTPKSWAKEYVQTSTKK 411
>sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium
discoideum GN=nola4 PE=1 SV=1
Length = 540
Score = 243 bits (620), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+L+VRT HYTP+P G SPL+R I+EY++ G +NLDKPSNPSSHEVVAWI+ ILR K
Sbjct: 42 NYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTK 101
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQ AGKEYI I +LH A+E + SK +
Sbjct: 102 TGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLT 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L +P + + + N S L+ D + G+IW+ C+AGTY+R
Sbjct: 162 GALFQ---RPPQKSAVKKRLRVRTIHN-------SKLLEFDPERNLGLIWVDCEAGTYIR 211
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL++GVG M ELRR RSGI SE+ G VT
Sbjct: 212 TLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTM 247
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KA KK MIK G LDK GKPNE TP+ +
Sbjct: 369 KAKVKKEMIKDGKLDKFGKPNEKTPSDW 396
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus GN=Dkc1
PE=1 SV=4
Length = 509
Score = 240 bits (613), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPLP G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KKMMIKQGLLDKHGKP +NTPA++
Sbjct: 385 KASQKKMMIKQGLLDKHGKPTDNTPATW 412
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus norvegicus
GN=Dkc1 PE=1 SV=4
Length = 509
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 160/228 (70%), Gaps = 14/228 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFD+LNVRT HYTP+P G +PL+R I EY+R G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 59 NFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEK 118
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ + +LH+A+E A+ S+ +
Sbjct: 119 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLT 178
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S ++ D G+ W+ C+AGTY+R
Sbjct: 179 GALFQR---------PPLIAAVKRQLRVRTIY-ESRVVEYDPERRLGVFWVSCEAGTYIR 228
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ----EHMFEH 224
T CVH+GL+LGVG QM ELRR RSG+ E D +VT +++++H
Sbjct: 229 TLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDH 276
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
KAS+KK +IKQGLLDKHG+P + TPAS+
Sbjct: 386 KASQKKQLIKQGLLDKHGRPTDGTPASW 413
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 OS=Homo sapiens GN=DKC1
PE=1 SV=3
Length = 514
Score = 238 bits (607), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 154/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNVRT HYTPL G +PL+R I +YIR G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 58 NFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEK 117
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E + S+ +
Sbjct: 118 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLT 177
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S +I D GI W+ C+AGTY+R
Sbjct: 178 GALFQR---------PPLIAAVKRQLRVRTIY-ESKMIEYDPERRLGIFWVSCEAGTYIR 227
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSG+ SE+D +VT
Sbjct: 228 TLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 263
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KK+MIKQGLLDKHGKP ++TPA++ E
Sbjct: 385 KASQKKLMIKQGLLDKHGKPTDSTPATWKQE 415
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus GN=DKC1
PE=2 SV=1
Length = 516
Score = 238 bits (607), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 155/216 (71%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKLNV T HYTPLP G +PL+R I +Y+R+G++NLDKPSNPSSHEVVAWI+RILR EK
Sbjct: 56 NFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 115
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCI+RATRLVKSQQSAGKEY+ I +LH+A+E+ A+ ++ +
Sbjct: 116 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 175
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + +A ++ + Y +S L+ D GI W+ C+AGTY+R
Sbjct: 176 GALFQR---------PPLIAAVKRQLRVRTIY-ESKLVEYDPERRLGIFWVSCEAGTYIR 225
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG QM ELRR RSGI E D +VT
Sbjct: 226 TLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTM 261
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASYLAE 141
KAS+KKMMI++GLLDKHGKPNE TP S+ E
Sbjct: 383 KASQKKMMIQKGLLDKHGKPNECTPDSWKKE 413
>sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cbf5 PE=2 SV=1
Length = 481
Score = 237 bits (604), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 145/216 (67%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 29 NYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 148
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 149 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNERHLGVFWVSCEAGTYIR 199
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG SE +G+VT
Sbjct: 200 TLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTL 235
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CBF5 PE=3 SV=1
Length = 474
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 145/210 (69%), Gaps = 10/210 (4%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
VR+ HYTP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAWIKRILRCEKTGHSGT
Sbjct: 33 VRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 92
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK +GCLIVC+DRATRLVKSQQ AGKEY+ I +LH A+ K + + +GL +
Sbjct: 93 LDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDAL-------KDEKELGRGLENL 145
Query: 127 HGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHM 186
G + P + + + T SNLI D + G+ W C+AGTY+RT CVH+
Sbjct: 146 TGALFQRPPLISAVKRQL---RVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHL 202
Query: 187 GLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
G++LGVG M ELRR RSG SE D LVT
Sbjct: 203 GMLLGVGGHMQELRRVRSGALSENDNLVTL 232
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
A KKK M G LDK+G+ NENTP ++ + N +PT
Sbjct: 355 AQKKKQMKADGKLDKYGRANENTPETWKKTYVSLENAEPT 394
>sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cbf5 PE=2 SV=1
Length = 487
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VRT H+TP+P G SPL+R ++ YI +G +NLDKPSNPSSHEVVAW+KRILR EK
Sbjct: 34 NYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRAEK 93
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ + +LH + K+ +
Sbjct: 94 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFKRALETL 153
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G L +P + + T +S L D G+ W+ C+AGTY+R
Sbjct: 154 TGAL--FQRPPLISAVKRQLRIR-------TIHESKLYEFDNDRHLGVFWVSCEAGTYIR 204
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVGA M ELRR RSG E +GLVT
Sbjct: 205 TLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTL 240
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASYLAELE--AAPNKKPTYMKSN 156
A +KK + G LDK+G+ NE+TPA + E + +AP + + S
Sbjct: 363 ALEKKKLKSAGKLDKYGRANEDTPAKWKTEYKDYSAPEEASAHAASE 409
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=CBF5 PE=3 SV=1
Length = 479
Score = 234 bits (596), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 143/216 (66%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+DKL VR+ HYTP+P G +PL R I+ Y+ +G +NLDKPSNPSSHEVVAWIKRILR EK
Sbjct: 29 NYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLDKPSNPSSHEVVAWIKRILRVEK 88
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLIVCIDRATRLVKSQQ AGKEY+ I +LH + K +
Sbjct: 89 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHEQL-------KDDKELN 141
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L + G + P + + + T S LI D G+ W C+AGTY+R
Sbjct: 142 RALENLTGALFQRPPLISAVKRQL---RVRTVYDSKLIEFDNKRGLGVFWASCEAGTYMR 198
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+G++LGVG M ELRR RSG SE D LVT
Sbjct: 199 TLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTL 234
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 112 ASKKKMMIKQGLLDKHGKPNENTPASY---LAELEAAPNKKPTYMKSNLISSDVTL 164
A KKK M G LDK+G+ NENTP ++ +L+ P P +S L++ + L
Sbjct: 357 AQKKKQMKADGKLDKYGRVNENTPENWKKDYKDLDEQP--APPIPESKLVAPEPQL 410
>sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana
GN=CBF5 PE=1 SV=1
Length = 565
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 149/216 (68%), Gaps = 10/216 (4%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N+D+LNVRT HYTP+ G SPL+R +QEYIR G +NLDKP+NPSSHEVVAWIKRILR EK
Sbjct: 49 NYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 108
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +G LIVCIDRATRLVKSQQ AGKEY+ + +LHSAV +VAK +
Sbjct: 109 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAK-------VA 161
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ L G + P + + + T +S L+ D + W+ C+AGTY+R
Sbjct: 162 RALESLTGAVFQRPPLISAVKRQL---RIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTF 216
T CVH+GL+LGVG M ELRR RSGI E + +VT
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTM 254
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 111 KASKKKMMIKQGLLDKHGKPNENTPASY 138
+AS KK +I G LDKHGKPNE TP +
Sbjct: 376 RASMKKKLIADGKLDKHGKPNEKTPVEW 403
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cbf5 PE=3 SV=1
Length = 474
Score = 210 bits (534), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 151/230 (65%), Gaps = 15/230 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
NFDKL VRT HYTP+P G +PL+R I EY+ +G +NLDKP+NPSSHEVVAW+K+ILR EK
Sbjct: 33 NFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEK 92
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGHSGTLDPK +GCLI+C DRATRLVKSQQSAGKEY+ + +LH +VE + +
Sbjct: 93 TGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNVASAIETLT 152
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
L + ++ ++ + Y +S LI D + + W C+AGTY+R
Sbjct: 153 GALFQR---------PPLISAVKRQLRIRSIY-ESKLIEFDNERNLAVFWASCEAGTYMR 202
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
T CVH+GL+LGVG M ELRR RSG SE D +VT M + + + W+
Sbjct: 203 TLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVT-----MHDVLDAQWI 247
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 124 LDKHGKPNENTPASY 138
LDK+G+PNENTPA +
Sbjct: 373 LDKYGRPNENTPADW 387
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 118/204 (57%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIKRIL EK GH GTLDPK SG L
Sbjct: 31 WGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ +A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEI------------LEIDGRDVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=truB PE=3 SV=1
Length = 334
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 116/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIKRIL EK GH GTLDPK SG L
Sbjct: 31 WGFPPYERPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V +V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPENKIIDVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEILE-------------IDGRDVLFKVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ LVT
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTL 217
>sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=truB PE=3
SV=1
Length = 338
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 114/205 (55%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAW+KRIL K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGIINLDKPPGPTSHEVVAWVKRILNLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVEN-----VAKASKKKMMIKQGLLDKHGKPN 131
V ++RATR+V++ AGKEY+++ LH V V + + +++ + L +
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDVPEDKILAVMREFQGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIDVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ LVT
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTL 217
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=truB
PE=1 SV=1
Length = 340
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 115/205 (56%), Gaps = 23/205 (11%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I+ G +NLDKP P+SHEVVAWIK+IL EK GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVE-----NVAKASKKKMMIKQGLLDKHGKPN 131
V +++ATR+V++ AGKEY+++ LH V V K + +++ + L +
Sbjct: 91 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 132 ENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLG 191
Y+ LE + DV G+ +AGTY+R+ H+GL LG
Sbjct: 151 RTRKVYYIEVLE-------------IEGRDVLFRVGV-----EAGTYIRSLIHHIGLALG 192
Query: 192 VGAQMIELRRNRSGIQSEEDGLVTF 216
VGA M ELRR RSG E++ L+T
Sbjct: 193 VGAHMSELRRTRSGPFKEDETLITL 217
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 13/207 (6%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+EYI G +NLDKP+ P+SHEVVAW+K I K GH GTLDPK +G L
Sbjct: 29 YGCPPEERPIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLP 88
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ +++AT+++++ AGKEY++I LH V+ + + ++K+ G + P
Sbjct: 89 IALEKATKIIQTLLPAGKEYVTIMHLHGDVDE----EELERVVKE----FEGTILQRPPL 140
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ P K + DV + G CQAGTY+R C +G LGVGA M
Sbjct: 141 RSAVKRRVRPKKIYYIDILEIDGRDVLMRVG-----CQAGTYIRKLCHDIGEALGVGAHM 195
Query: 197 IELRRNRSGIQSEEDGLVTFRQEHMFE 223
ELRR R+G SEE+ + + +E
Sbjct: 196 AELRRTRTGPFSEENAVTLHDVKDAYE 222
>sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=Thermococcus onnurineus
(strain NA1) GN=truB PE=3 SV=1
Length = 334
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAW+K++ K GH GTLDPK SG L
Sbjct: 31 WGFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH V E+ A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGEVPEDKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ K DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEILEIDGK------------DVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>sp|C5A255|TRUB_THEGJ Probable tRNA pseudouridine synthase B OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=truB PE=3 SV=1
Length = 334
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 21/204 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R ++ +++ G +NLDKP P+SHEVVAWIK++ K GH GTLDPK SG L
Sbjct: 31 WGFPPERRPMEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLP 90
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAV-ENVAKASKKKM---MIKQGLLDKHGKPNE 132
V ++RATR+V++ AGKEY+++ LH + E+ A K+ +I++ L K
Sbjct: 91 VALERATRVVQALLPAGKEYVALMHLHGDIPEDKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 133 NTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGV 192
T Y E+ + DV G+ +AGTY+R+ H+GL LGV
Sbjct: 151 RTRKVYYIEV------------LEIEGRDVLFRVGV-----EAGTYIRSLIHHIGLALGV 193
Query: 193 GAQMIELRRNRSGIQSEEDGLVTF 216
GA M ELRR RSG E++ LVT
Sbjct: 194 GAHMAELRRTRSGPFKEDETLVTL 217
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=truB PE=3 SV=2
Length = 354
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 13/215 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
N ++ + + T +G P +R + Y+R G + +DKP P+SHEVVAWIKR+L +
Sbjct: 25 NTSRILYKYDEPTDPRYGYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSR 84
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
GH GTLDPK +G L V ++R TR++ + + KEY+ + +LH VE K+
Sbjct: 85 AGHGGTLDPKVTGVLPVALERMTRIIGTVMHSSKEYVCVMQLHRPVEEDRLREVLKLF-- 142
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
G+ + P + ++ A + + L + T ++ + C+AGTY+R
Sbjct: 143 ------EGEIYQKPPLR--SSVKRALRTRRVFRIELL---EYTGKYALLRVDCEAGTYMR 191
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVT 215
C +GLVLGVGA M ELRR R+G SE+ GL+
Sbjct: 192 KLCWDIGLVLGVGAHMRELRRIRTGPFSEDSGLMV 226
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
Length = 324
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G P +R I+ +I G VNLDKPS P+SH+V +W++ +L EK GH GTLDPK +G L
Sbjct: 21 YGCPPAERDIEAHISMGVVNLDKPSGPTSHQVDSWVRDMLHVEKVGHGGTLDPKVTGVLP 80
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ IDRATR+++ A KEY+ + ++H V+ + I++ L + GK + P
Sbjct: 81 LGIDRATRVMQLLLEAPKEYVCLMRVHREVD--------EERIREVLGEFQGKIFQIPPL 132
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
+ + + T + +++ D + + C+AGTYVR YC +G LG GA M
Sbjct: 133 KSAVKRDL---RVRTIYRVDILEVDG--QDVLFRIACEAGTYVRKYCHDVGEALGAGAHM 187
Query: 197 IELRRNRSGIQSEEDGLVTFRQEHMFEHIVSTWV 230
ELRR G +EE GLVT H + WV
Sbjct: 188 AELRRTAVGPFTEE-GLVTL---HDLKDAYQFWV 217
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=truB PE=3 SV=1
Length = 325
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 13/210 (6%)
Query: 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEK 60
+ V+ + T +G P +R ++EYIR G V +DKP PSSHEVV W++RIL K
Sbjct: 2 KLENFYVKDDASTDESYGCYPTKRPMEEYIRKGLVCIDKPMGPSSHEVVVWVRRILNVSK 61
Query: 61 TGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIK 120
TGH+GTLDP+ +G L + I+ AT++VK Q + KEY+ + +LH AK + ++K
Sbjct: 62 TGHAGTLDPRVTGVLPIFIENATKMVKFLQESSKEYVCLMRLHGD----AKREDVEKVMK 117
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVR 180
+ + +P + + + + M+ + V ++GTY+R
Sbjct: 118 LFVGRIYQRPPLKSAVKKVLRIREIYEMELLEMEGRDVLFRVV---------TESGTYIR 168
Query: 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
C +G VLG GA M ELRR R+G E+
Sbjct: 169 KLCRDIGEVLGTGAHMQELRRTRTGKFGED 198
>sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=truB PE=3 SV=1
Length = 338
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G P +R I EYI G VN+DKP P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPSYGSYPEKRPILEYIEKGVVNIDKPKGPTSHEVAAWVKAILGVSTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT+ V + + +GKEY+ + KLH K +K++ K + ++
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCLLKLH-------KEMPQKLVRK--VCEEF 128
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
P P A + Y++ I L + C+AGTY+R C +G
Sbjct: 129 TGPIYQMPPIKSAVKRVIRIRTIYYLEVLEIEGSFVL----FRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M ELRR ++G +EE LVT +
Sbjct: 185 LALGCGGHMQELRRTKAGPFTEET-LVTLQD 214
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=truB PE=1 SV=1
Length = 336
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 19/214 (8%)
Query: 3 DKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTG 62
++L V+ T +G +P +R I++ I+ G V +DKP P+SHEV W+K+IL +K G
Sbjct: 16 EELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAG 75
Query: 63 HSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIK 120
H GTLDPK +G L V ++RAT+ + KEY+ + LH ++ E++ + K+
Sbjct: 76 HGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEEDILRVFKEFT--- 132
Query: 121 QGLLDKHGKPNENTPASYLAELEAAPNKKPTYMK-SNLISSDVTLSTGIIWLKCQAGTYV 179
G+ + P L+AA ++ K L D + +KCQ+GTY+
Sbjct: 133 -------GRIYQRPP------LKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYI 179
Query: 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
R C +G LG A M ELRR +SG E+D +
Sbjct: 180 RKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAV 213
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+GK P QRT EYIR +V LDKP PSSHEV AW+K+IL E+ GH+GTLDPK SG L
Sbjct: 20 WGKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLP 79
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ + T+++ + + K Y+++ K H V+ + + ++++ + + KP +
Sbjct: 80 IAVAEGTKVLMALSRSDKVYVAVAKFHGDVDE----ERLRAVLREFQGEIYQKPPLRS-- 133
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
A + T +L ++ +I + +AGTY R +G VLGVGA M
Sbjct: 134 -------AVKRQLRTRRVFSLELLELEGRYAVIKMHVEAGTYARKIIHDIGEVLGVGANM 186
Query: 197 IELRR 201
ELRR
Sbjct: 187 RELRR 191
>sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=truB PE=3 SV=1
Length = 338
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G +P +R I EYI G VN+DKPS P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPVYGCAPEKRPILEYIEKGVVNIDKPSGPTSHEVAAWVKAILGVNTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT+ V + + +GKEY+ KLH +A K++ K + ++
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCHLKLH-------RAMPPKLVRK--VCEEF 128
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
P P A + Y++ I L + C+AGTY+R C +G
Sbjct: 129 TGPIYQMPPIKSAVKRVIRVRTIYYIEVLEIEGMSVL----FRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M LRR ++G +E+ LVT +
Sbjct: 185 LALGCGGHMQALRRTKAGPFTEKT-LVTLHE 214
>sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=truB PE=3 SV=1
Length = 338
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 14/211 (6%)
Query: 8 RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTL 67
++ +T +G P +R I EYI G VN+DKP P+SHEV AW+K IL GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 68 DPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKH 127
DPK +G L + +AT V + + +GKEYI KLH A+ + +++Q +
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAM--------PQKLVRQVCEEFT 129
Query: 128 GKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMG 187
G + P + ++ + Y +L ++ ++ + + C+AGTY+R C +G
Sbjct: 130 GPIYQMPPIK--SAVKRVIRVRTIY---HLEVLEIEGTSVLFRVGCEAGTYIRKLCHDIG 184
Query: 188 LVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
L LG G M LRR ++G +E+ L+T +
Sbjct: 185 LALGCGGHMQGLRRTKAGPFTEKT-LITLHE 214
>sp|Q8ZYB3|TRUB_PYRAE Probable tRNA pseudouridine synthase B OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=truB PE=3 SV=1
Length = 333
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 39/223 (17%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
F K TN +GK P QR+ +EYI+ V LDKP PSSHEV AW+K+IL E+
Sbjct: 9 FSKFEESTNPQ----WGKPPSQRSTEEYIKYSLVILDKPRGPSSHEVAAWVKKILGVERA 64
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQ 121
GH+GTLDPK SG L + I T+++ + + K Y+++ K H
Sbjct: 65 GHAGTLDPKVSGVLPIAIAEGTKVLMALSRSDKVYVAVAKFH------------------ 106
Query: 122 GLLDKHGKPNENTPASYLAELEAAPNKKPTYMKS--------NLISSDVTLSTG---IIW 170
G +E+ + L E + +KP + + S D+ G +I
Sbjct: 107 ------GDVDEDKLRAVLQEFQGVIYQKPPLRSAVKRQLRTRRVYSLDLLELDGRYAVIK 160
Query: 171 LKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+ +AGTY R +G VLGVGA M ELRR +E++ +
Sbjct: 161 MHVEAGTYARKIIHDIGEVLGVGANMRELRRIAVSCYTEDEAV 203
>sp|Q975L5|TRUB_SULTO Probable tRNA pseudouridine synthase B OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=truB
PE=3 SV=2
Length = 337
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 115/213 (53%), Gaps = 14/213 (6%)
Query: 6 NVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSG 65
N+ + YT +G +R I+ I+ +N DKP P+SHEV WIK++ + K GH G
Sbjct: 21 NIIQDSYTNEKYGYFADKRPIEVLIKNSIINADKPPGPTSHEVAYWIKQMFKVSKAGHGG 80
Query: 66 TLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLD 125
TLDPK +G L + ++ AT+L+ S+GKEY+ + ++H + K +I + +
Sbjct: 81 TLDPKVTGVLPIGLENATKLMSYISSSGKEYVCLMQVHCDFN----IDELKQIISKFIGI 136
Query: 126 KHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVH 185
+ KP P + ++ KK Y ++ D ++ + GTY+R C
Sbjct: 137 IYQKP----PVR--SSVKRRTRKKKIY---DIEILDTDKRFILLRISSDPGTYMRKLCHD 187
Query: 186 MGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQ 218
+G++LG GA M ELRR RSGI +E++ LVT ++
Sbjct: 188 IGVILGCGAHMRELRRIRSGIFTEKN-LVTLQE 219
>sp|A1RTL7|TRUB_PYRIL Probable tRNA pseudouridine synthase B OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=truB PE=3 SV=1
Length = 328
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
++ V+T T +GK P +RT +EYIR V +DKP PSSHEV AW+K+IL E+ GH
Sbjct: 7 EIFVKTQESTNPEWGKPPSKRTTEEYIRYSLVLIDKPRGPSSHEVAAWVKKILGVERAGH 66
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
+GTLDPK SG L + + T+ + + + K Y+++ K H
Sbjct: 67 AGTLDPKVSGVLPIAVAEGTKALLALSRSDKVYVAVAKFH-------------------- 106
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKS-----------NLISSDVTLSTGIIWLK 172
G +E + L E + +KP S +L ++ +I +
Sbjct: 107 ----GDVDEEKLKAVLNEFQGVIYQKPPLRSSVKRQLRTRHVYSLELLELDGRYAVIKMH 162
Query: 173 CQAGTYVRTYCVHMGLVLGVGAQMIELRR 201
+AGTY R +G VLGVGA M ELRR
Sbjct: 163 VEAGTYARKLIHDIGEVLGVGANMRELRR 191
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 21/202 (10%)
Query: 2 FDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKT 61
F KL TN +GK P R+ +E+IR ++ LDKP P+SHEV AW+K+IL E+
Sbjct: 9 FVKLEEGTNPQ----WGKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERA 64
Query: 62 GHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHS--AVENVAKASKKKMMI 119
GHSGTLDPK SG L V + T+++ + A K YI++ K H VEN +
Sbjct: 65 GHSGTLDPKVSGVLPVAVAEGTKVLMALSRADKVYIAVAKFHGDVDVEN----------L 114
Query: 120 KQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYV 179
++ L + G+ + P A + T +L ++ ++ + +AGTY
Sbjct: 115 RRVLQELQGEIYQKPPLR-----SAVKRQLRTRRVYSLELLELDGRYAVLKMHVEAGTYA 169
Query: 180 RTYCVHMGLVLGVGAQMIELRR 201
R +G +LGVGA M ELRR
Sbjct: 170 RKLIHDLGEILGVGANMRELRR 191
>sp|B1L793|TRUB_KORCO Probable tRNA pseudouridine synthase B OS=Korarchaeum cryptofilum
(strain OPF8) GN=truB PE=3 SV=1
Length = 325
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 102/201 (50%), Gaps = 14/201 (6%)
Query: 12 YTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCE-KTGHSGTLDPK 70
Y P P+G P +R I Y+ G + LDKP PSSHEV +KRIL K GH GTLDPK
Sbjct: 14 YEPGPYGYRPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPK 73
Query: 71 TSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKP 130
SG L + + AT+L K KEY+ LH V + +G LDK P
Sbjct: 74 VSGVLPIVLGNATKLSKFISGYDKEYVGTLYLHGDV---------PIDELKGALDKFTGP 124
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
P A ++ + + Y L+SS+ + ++ ++GTY+R +G L
Sbjct: 125 IFQRPPVKSA-VKRSLRVRRVY-SIELLSSEGRFHK--LRVRVESGTYIRKLFFDIGEFL 180
Query: 191 GVGAQMIELRRNRSGIQSEED 211
GVG M +LRR RSGI +E+D
Sbjct: 181 GVGGSMRDLRRIRSGIFTEKD 201
>sp|B1YA64|TRUB_PYRNV Probable tRNA pseudouridine synthase B OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=truB PE=3 SV=1
Length = 331
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 35/216 (16%)
Query: 7 VRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGT 66
V+ T +GK P +R+ +E+I+ V LDKP PSSHEV AW+K+IL E+ GH+GT
Sbjct: 10 VKIQEATNPEWGKPPSRRSAEEHIKYSLVLLDKPRGPSSHEVAAWVKKILGVERAGHAGT 69
Query: 67 LDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDK 126
LDPK SG L + + T+++ + + K Y+++ K
Sbjct: 70 LDPKVSGVLPIAVAEGTKVLLALSRSDKVYVAVAKF------------------------ 105
Query: 127 HGKPNENTPASYLAELEAAPNKKP---TYMKSNLISSDV--------TLSTGIIWLKCQA 175
HG +E + L E + ++P + +K L + V +I + +A
Sbjct: 106 HGDVDEGKLRAVLGEFQGIIYQRPPLRSAVKRQLRTRQVYSIELLELDGRYAVIKMHVEA 165
Query: 176 GTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211
GTY R +G VLGVGA M ELRR +EE+
Sbjct: 166 GTYARKLIHDIGEVLGVGANMRELRRVAVSCYTEEE 201
>sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=truB PE=3 SV=1
Length = 314
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 14 PLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSG 73
P+ P +R + G VNLDKP PS+H+V AWI+ ++ H GTLDPK +G
Sbjct: 18 PMTLRAPPDERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTG 77
Query: 74 CLIVCIDRATRLVKSQQSAGKEYISIFKLHS-AVENVAKASKKKMMIKQGLLDKHGKPNE 132
CL V + A R+ + +A KEY+++ +LH A ++A ++ + D + KP
Sbjct: 78 CLPVLLGDAARMAQVFDNAVKEYVTVLELHDQAPADIAD------IVAEFETDIYQKP-- 129
Query: 133 NTPASYLAELEAAPNKKPT--YMKSNLISSDVTLSTG----IIWLKCQAGTYVRTYCVHM 186
P K ++S I S L G ++ ++C +GTY+R C +
Sbjct: 130 -------------PRKSAVKRQLRSRRIHSLDILEQGDRRLLLRVRCASGTYIRKLCHDI 176
Query: 187 GLVLGVGAQMIELRRNRSG 205
GL G GA M +LRR +G
Sbjct: 177 GLAAGTGAHMGDLRRTATG 195
>sp|P60346|TRUB_NANEQ Probable tRNA pseudouridine synthase B OS=Nanoarchaeum equitans
(strain Kin4-M) GN=truB PE=3 SV=1
Length = 348
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 23/218 (10%)
Query: 17 FGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLI 76
+G+ P R I+ ++ +NLDKPS P+SH+VVAW++ I+ K GH GTLDPK +G L
Sbjct: 43 WGEDPYNRPIERLLKYSVINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLP 101
Query: 77 VCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPA 136
+ I AT+++++ AGKEY+++ LH V +K +IK ++ K TP
Sbjct: 102 IAIGEATKVLQTLLIAGKEYVALMHLHKEVS-------EKDIIK--VMSKFVGTIIQTPP 152
Query: 137 SYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQM 196
A + KK +K I L + Q G Y+R +G+ LGVGA M
Sbjct: 153 LRSAVKKRPRKKKVYCIKIIEIDGKDVLFR----VSTQGGVYIRKLIHDIGVKLGVGAHM 208
Query: 197 IELRRNRSG---------IQSEEDGLVTFRQEHMFEHI 225
ELRR +SG +Q D L +++E E+I
Sbjct: 209 QELRRIKSGPFHENNSVYLQDIVDSLYFWKEEGNEEYI 246
>sp|Q97BU9|TRUB_THEVO Probable tRNA pseudouridine synthase B OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=truB PE=3 SV=1
Length = 353
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 23/183 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP P+SH+V W+++IL EK GH GTLDP +G L++ I +A RL+
Sbjct: 10 GFIVIDKPQGPTSHQVDYWVRQILGTEKVGHIGTLDPNVTGVLVMAIGKAVRLIDVVHEK 69
Query: 93 GKEYISIFKLHSAV--ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK- 149
KEY+ + + HS + E V + +K T L + +A ++K
Sbjct: 70 PKEYVGVMRFHSDISEEEVREVFRKF----------------TTRIYQLPPVRSAVSRKV 113
Query: 150 --PTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQ 207
T + ++I + + +KC++GTY+RT C +G V G G QM++LRR +G
Sbjct: 114 RIKTIYELDMIEKKDKIV--LFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRISTGPF 171
Query: 208 SEE 210
E+
Sbjct: 172 KED 174
>sp|Q6LWM3|TRUB_METMP Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain S2 / LL) GN=truB PE=3 SV=1
Length = 333
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 13/202 (6%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH E V I+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDDAELVD--------IENIF 113
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYC 183
+ G+ ++ P + K + D+ T KCQ+GTY+R
Sbjct: 114 KEFTGRIHQRPPLKAAVKRSLRIRKIYEIEILEIDGRDILFRT-----KCQSGTYLRKLV 168
Query: 184 VHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 169 DDMGEALGTSAHMQELRRTISG 190
>sp|A6VHV2|TRUB_METM7 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=truB PE=3 SV=1
Length = 333
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P +R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKLEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>sp|A4G0N3|TRUB_METM5 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=truB PE=3 SV=1
Length = 333
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 95/203 (46%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKVEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>sp|A9A8X7|TRUB_METM6 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=truB PE=3 SV=1
Length = 333
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGH 63
+L V+ T +G P +R I+ + G V +DKPS P+SHEV AW++ +L K GH
Sbjct: 2 ELIVKEESKTDYNYGSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGH 61
Query: 64 SGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGL 123
GTLDPK +G L V + T+ V KEY+ + LH AK + + K+
Sbjct: 62 GGTLDPKVTGALPVALGNTTKCVPIWHIPPKEYVCLMHLHDD----AKLEDIENIFKEFT 117
Query: 124 LDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIW-LKCQAGTYVRTY 182
H +P L+AA + K I I++ KCQ+GTY+R
Sbjct: 118 GRIHQRP----------PLKAAVKRSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKL 167
Query: 183 CVHMGLVLGVGAQMIELRRNRSG 205
MG LG A M ELRR SG
Sbjct: 168 VDDMGEALGTSAHMQELRRTISG 190
>sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=truB PE=3 SV=1
Length = 331
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 13 TPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTS 72
T +G P R I E ++ G V +DKPS P+SHEV AW++ IL+ + GH GTLDPK +
Sbjct: 11 TNYEYGCDPYNRPIGELLKNGIVVIDKPSGPTSHEVSAWVRDILKLKLAGHGGTLDPKVT 70
Query: 73 GCLIVCIDRATRLVKSQQSAGKEYISIFKLH--SAVENVAKASKKKMMIKQGLLDKHGKP 130
G L V ++ ++ + KEY+ + LH + E + K KK G+
Sbjct: 71 GVLPVALENTSKCISVWHMIPKEYVCLMHLHRDTEEEELLKIFKKFT----------GRI 120
Query: 131 NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVL 190
+ P A ++ + + Y + L+ D + ++CQ+GTY+RT MG L
Sbjct: 121 FQRPPLK--AAVKRSLRIRKIY-ELELLEKDG--RDVLFRVRCQSGTYIRTLAEDMGEAL 175
Query: 191 GVGAQMIELRRNRSGIQSEED 211
G A M ELRR SG +E+D
Sbjct: 176 GTSAHMQELRRIVSGPFTEKD 196
>sp|Q9HPA4|TRUB_HALSA Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=truB PE=3
SV=1
Length = 301
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R+ + G VNLDKP PS+H+V AWI+ ++ EK H+GTLDPK +GCL V
Sbjct: 7 PGERSPAAVLSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+++ +LH D + + ++
Sbjct: 67 TATRIAPALLEGFKEYVAVLELH---------------------DDPPRILPDVIEAFTG 105
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK + +L DV ++ ++C++GTY+R C +G LG
Sbjct: 106 EIYQKPPKKSAVARRLRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALGTN 165
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
A M LRR+ + + D LVT
Sbjct: 166 AHMGHLRRSATTPFDDTD-LVTL 187
>sp|B0R686|TRUB_HALS3 Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=truB PE=3 SV=1
Length = 301
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 21 PLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80
P +R+ + G VNLDKP PS+H+V AWI+ ++ EK H+GTLDPK +GCL V
Sbjct: 7 PGERSPAAVLSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTG 66
Query: 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA 140
ATR+ + KEY+++ +LH D + + ++
Sbjct: 67 TATRIAPALLEGFKEYVAVLELH---------------------DDPPRILPDVIEAFTG 105
Query: 141 ELEAAPNKKPTYMKS-------NLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVG 193
E+ P KK + +L DV ++ ++C++GTY+R C +G LG
Sbjct: 106 EIYQKPPKKSAVARRLRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALGTN 165
Query: 194 AQMIELRRNRSGIQSEEDGLVTF 216
A M LRR+ + + D LVT
Sbjct: 166 AHMGHLRRSATTPFDDTD-LVTL 187
>sp|Q9HIT4|TRUB_THEAC Probable tRNA pseudouridine synthase B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=truB PE=3 SV=2
Length = 365
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 15/179 (8%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G+V LDKP P+SH+V W++ IL EK H GTLDP +G L + I +A RLV +
Sbjct: 8 GFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHES 67
Query: 93 GKEYISIFKLHSAV-ENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPT 151
KEY+ + + + + E + KK G+ + P + + + K
Sbjct: 68 PKEYVGVMRFYEDITEEEVRYYFKKFT---------GRIYQLPPVR--SAVARSLRIKTV 116
Query: 152 YMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEE 210
Y L D + + +KC++GTY+RT C +G V G G QM++LRR +G SE+
Sbjct: 117 YSLDLLEKKDRLV---LFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSED 172
>sp|Q6L1A0|TRUB_PICTO Probable tRNA pseudouridine synthase B OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=truB PE=3 SV=1
Length = 349
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G++ +DKP P+SH++ +WI+ I + GH GTLDP SG L++ + +AT+L+
Sbjct: 6 GFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDIVHRE 65
Query: 93 GKEYISIFKL-----HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPN 147
KEY+S+ + H ++++V K K+ + P + S + N
Sbjct: 66 SKEYVSVLRTYDKYDHDSIKSVFKEFTGKI---------YQIPPVRSAVSRELRIREIYN 116
Query: 148 KKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+ M + + + C++GTY+RT C +G VLG G QM ELRR R+G
Sbjct: 117 LELLEMDEKFV---------LFKVCCESGTYIRTLCTDIGYVLGSGGQMAELRRTRTG 165
>sp|Q6AJY7|TRUB_DESPS tRNA pseudouridine synthase B OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=truB PE=3 SV=1
Length = 246
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 32/212 (15%)
Query: 32 AGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-ATRLVKSQQ 90
AG +DKP +S VV+ ++RIL +K GH+GTLDP +G L+VC R AT+++ S
Sbjct: 8 AGIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFM 67
Query: 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLA-ELEAAP--- 146
KEYI+ L E + + G L H + E A + +++ P
Sbjct: 68 DGEKEYIATLCLGVETETQDPEGAEIARKQVGFL--HAETIETCLAGFKGTQMQVPPAYS 125
Query: 147 ----NKKPTYM---KSNLISSDV---------TLSTG---------IIWLKCQAGTYVRT 181
KP Y K + D L G +I ++C G+Y+RT
Sbjct: 126 ALKHQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRT 185
Query: 182 YCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL 213
+G VLG GA + +LRR +SG + ED L
Sbjct: 186 LGSDIGKVLGCGAHLTDLRRTKSGFFNVEDAL 217
>sp|Q9Z5I4|TRUB_MYCLE tRNA pseudouridine synthase B OS=Mycobacterium leprae (strain TN)
GN=truB PE=3 SV=1
Length = 320
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 33 GYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSA 92
G V +DKPS +SH+VVA +RI + GH+GTLDP +G L++ +DRAT+++ A
Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
Query: 93 GKEYISIFKL--------------------HSAVENVAKA-SKKKMMIKQ-----GLLDK 126
KEY++ +L H E +A A + + IKQ +
Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
Query: 127 HGKPNEN-TPASYLAELEAAPNK-----------KPTYMKSNLISSDVTLSTGIIWLKCQ 174
G+ ++ EL+A P + P +++I DV ++C
Sbjct: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVE-------VECS 185
Query: 175 AGTYVRTYCVHMGLVLGVGAQMIELRRNRSG 205
+GTY+R +G GVG + LRR R G
Sbjct: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVG 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,579,935
Number of Sequences: 539616
Number of extensions: 3481309
Number of successful extensions: 9494
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8457
Number of HSP's gapped (non-prelim): 946
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)