Query psy1176
Match_columns 232
No_of_seqs 184 out of 1154
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:13:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_A H/ACA ribonucleoprotein 100.0 2.6E-73 9E-78 530.5 22.0 212 1-222 28-239 (400)
2 2apo_A Probable tRNA pseudouri 100.0 2.2E-69 7.4E-74 499.3 21.8 205 4-222 38-242 (357)
3 2aus_C Pseudouridine synthase; 100.0 6E-69 2.1E-73 493.0 22.2 206 4-222 17-223 (334)
4 1r3e_A TRNA pseudouridine synt 100.0 2.9E-68 9.8E-73 483.1 20.9 187 30-221 1-212 (309)
5 1sgv_A TRNA pseudouridine synt 100.0 5.8E-68 2E-72 482.1 21.0 189 31-222 5-221 (316)
6 1k8w_A TRNA pseudouridine synt 100.0 3.3E-67 1.1E-71 479.3 22.4 188 30-222 23-235 (327)
7 2v9k_A Uncharacterized protein 99.4 3.1E-12 1E-16 123.1 11.4 101 91-204 410-520 (530)
8 3dh3_A Ribosomal large subunit 98.7 5.2E-08 1.8E-12 87.4 10.7 154 32-226 67-236 (290)
9 1v9k_A Ribosomal large subunit 97.9 8.5E-06 2.9E-10 69.9 4.3 70 32-101 9-90 (228)
10 2gml_A Ribosomal large subunit 97.9 4.2E-05 1.4E-09 66.8 8.5 146 33-224 15-181 (237)
11 1vio_A Ribosomal small subunit 97.3 3.9E-05 1.3E-09 66.2 0.5 142 32-211 61-214 (243)
12 2i82_A Ribosomal large subunit 97.3 0.00016 5.4E-09 61.5 3.9 70 32-104 19-101 (217)
13 1ksk_A Ribosomal small subunit 97.2 4.6E-05 1.6E-09 65.3 0.1 69 32-101 63-140 (234)
14 1v9f_A Ribosomal large subunit 97.2 0.00033 1.1E-08 63.0 5.0 70 32-101 90-175 (325)
15 2oml_A Ribosomal large subunit 97.1 0.00011 3.8E-09 61.1 0.9 157 32-211 11-178 (189)
16 2olw_A Ribosomal large subunit 96.9 0.00018 6.1E-09 61.4 0.9 70 32-101 39-114 (217)
17 1szw_A TRNA pseudouridine synt 27.6 49 0.0017 30.2 4.0 45 34-79 67-113 (379)
18 3dmb_A Putative general stress 25.2 61 0.0021 24.6 3.6 50 45-94 5-68 (147)
No 1
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=2.6e-73 Score=530.52 Aligned_cols=212 Identities=57% Similarity=0.951 Sum_probs=200.4
Q ss_pred CCcccceeccCCCCCCCCCCCCccchhhhccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEc
Q psy1176 1 NFDKLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCID 80 (232)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG 80 (232)
|||+|++|++++||+++|+.|.+|++.+++.+|||+||||+||||||||+|+|++|+.+|+||+|||||+||||||||+|
T Consensus 28 ~~~~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG 107 (400)
T 3u28_A 28 NFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCID 107 (400)
T ss_dssp TGGGSEESCSCCCCCCCSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEG
T ss_pred chHheeeecccccCCccCCCcCcCCHHHhccCcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCceEEEEEEecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEe
Q psy1176 81 RATRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISS 160 (232)
Q Consensus 81 ~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~ 160 (232)
+|||+++|+++.+|+|+++++||.+++ ++++|++++++|+|.|+|+||+ |||+|++ .|+++||++++++|
T Consensus 108 ~aTKl~~~l~~~~K~Y~a~~~lG~~~~-------~~~~i~~~l~~f~G~i~Q~PP~--ySAvK~~-~R~v~I~~i~ll~~ 177 (400)
T 3u28_A 108 RATRLVKSQQGAGKEYVCIVRLHDALK-------DEKDLGRSLENLTGALFQRPPL--ISAVKRQ-LRVRTIYESNLIEF 177 (400)
T ss_dssp GGGGGHHHHHHSCEEEEEEEEESSCCS-------STTHHHHHHHHTCEEEEECCC-------CCC-CEEEEEEEEEEEEE
T ss_pred hHHhHhHHhcCCCcEEEEEEEeCCCCC-------CHHHHHHHHHhCcCceEEECCc--eecccCC-ceeEEEEEEEEEEE
Confidence 999999999999999999999999874 6788999999999999999999 9999998 89999999999999
Q ss_pred eCCCceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 161 DVTLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 161 ~~~~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
+.+.+.++|+|+||+||||||||+|||++|||+|||++||||++|+|+++|+++||+||.+.
T Consensus 178 ~~~~~~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~ 239 (400)
T 3u28_A 178 DNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDA 239 (400)
T ss_dssp ETTTTEEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHH
T ss_pred cCCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHh
Confidence 87667899999999999999999999999999999999999999999999988999999753
No 2
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=2.2e-69 Score=499.31 Aligned_cols=205 Identities=34% Similarity=0.570 Sum_probs=187.9
Q ss_pred ccceeccCCCCCCCCCCCCccchhhhccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEcccc
Q psy1176 4 KLNVRTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRAT 83 (232)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aT 83 (232)
.|++|+.++||+++|+.|.+||+.+++.||||+||||+||||||||+|+|++++.+|+||+|||||+||||||||+|+||
T Consensus 38 ~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aT 117 (357)
T 2apo_A 38 ELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERAT 117 (357)
T ss_dssp CEEESSCCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred eEEEecccccCcccCCCcccCChhHhccCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCceEEEEEEecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeCC
Q psy1176 84 RLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVT 163 (232)
Q Consensus 84 kl~~~l~~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~ 163 (232)
|+++|+++.+|+|+++++||.. +++++|++++++|+|+|+|+||+ |||+|+. +|+++||++++++|+.
T Consensus 118 k~~~~l~~~~K~Y~~~~~lG~~--------~~~~~i~~~l~~f~G~i~Q~PP~--~SAvK~~-~R~v~I~~~~l~~~~~- 185 (357)
T 2apo_A 118 KTIPMWHIPPKEYVCLMHLHRD--------ASEEDILRVFKEFTGRIYQRPPL--KAAVKRR-LRIRKIHELELLDKDG- 185 (357)
T ss_dssp GGGGGTTSSCEEEEEEEEESSC--------CCHHHHHHHHHHHSEEEECC--------------CEEEEEEEEEEEEET-
T ss_pred hHHHHhccCCcEEEEEEEECCC--------CCHHHHHHHHHhCcccEEEeCCc--hhhcccc-ccceeEEEEEEEEeeC-
Confidence 9999999999999999999963 47899999999999999999999 9999987 8999999999999976
Q ss_pred CceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 164 LSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 164 ~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
|.+.|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| +||+||.+.
T Consensus 186 -~~~~~~v~cs~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a-~tl~~l~~~ 242 (357)
T 2apo_A 186 -KDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDA-VYLQDLLDA 242 (357)
T ss_dssp -TEEEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGC-BCHHHHHHH
T ss_pred -CEEEEEEEECCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHc-cCHHHHHhh
Confidence 799999999999999999999999999999999999999999999997 999999754
No 3
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=6e-69 Score=492.99 Aligned_cols=206 Identities=39% Similarity=0.607 Sum_probs=186.9
Q ss_pred ccce-eccCCCCCCCCCCCCccchhhhccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccc
Q psy1176 4 KLNV-RTNHYTPLPFGKSPLQRTIQEYIRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA 82 (232)
Q Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~a 82 (232)
.|++ ++.++||+..|+.|.+||+.+++.||||+||||+||||||||+++|++++.+|+||+|||||+||||||+|+|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~a 96 (334)
T 2aus_C 17 EVIVKDDKAETNPKWGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERA 96 (334)
T ss_dssp CEEESCTTCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG
T ss_pred eEEEecccccCCcccCCCcccCChhHhccCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChh
Confidence 4778 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCceEEEEEEecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeC
Q psy1176 83 TRLVKSQQSAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDV 162 (232)
Q Consensus 83 Tkl~~~l~~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~ 162 (232)
||+++|+++.+|+|+++++||.. +++++|++++++|+|+|+|+||+ |||+|+. +|+++||++++++|+.
T Consensus 97 Tk~~~~l~~~~K~Y~~~~~lg~~--------~~~~~i~~~l~~f~G~i~Q~pP~--~SA~k~~-~R~v~I~~~~~~~~~~ 165 (334)
T 2aus_C 97 TRVVQALLPAGKEYVALMHLHGD--------VPEDKIRAVMKEFEGEIIQRPPL--RSAVKRR-LRTRKVYYIEILEIDG 165 (334)
T ss_dssp GGGGGGGTTCCEEEEEEEEESSC--------CCHHHHHHHHHHTSEEEECC---------------EEEEEEEEEEEEET
T ss_pred hhhHHHhcccCcEEEEEEEECCC--------CCHHHHHHHHHhCcCeEEEeCCc--cccCcCC-cCCEEEEEEEEEEeeC
Confidence 99999999999999999999963 57899999999999999999999 9999987 8999999999999976
Q ss_pred CCceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 163 TLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 163 ~~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
|.+.|+|+||+||||||||||||++|||+|||++||||++|+|+++|+++||+||.+.
T Consensus 166 --~~~~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~~~~~l~~l~~~ 223 (334)
T 2aus_C 166 --RDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDY 223 (334)
T ss_dssp --TEEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESSTTEECHHHHHHH
T ss_pred --CeEEEEEEECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhhcccCHHHHHhh
Confidence 7999999999999999999999999999999999999999999999966999999754
No 4
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=2.9e-68 Score=483.09 Aligned_cols=187 Identities=25% Similarity=0.421 Sum_probs=177.9
Q ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceeccc
Q psy1176 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109 (232)
Q Consensus 30 ~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~ 109 (232)
|.||||+||||+||||||||+|+|++++.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus 1 ~~~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (309)
T 1r3e_A 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (309)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc---------ccCcHHHHHHHHhcCccCceecCCccCccceeeCC----------------CCccEEEEEEeeEeeCCC
Q psy1176 110 AK---------ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----------------NKKPTYMKSNLISSDVTL 164 (232)
Q Consensus 110 ~~---------v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G----------------~R~v~Iy~i~l~~~~~~~ 164 (232)
|. +.+++++|++++++|+|+|+|+||+ |||+|++| +|+++||++++++|+.
T Consensus 81 D~eG~v~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~--~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~-- 156 (309)
T 1r3e_A 81 DITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPA--YSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEG-- 156 (309)
T ss_dssp BTTSCEEEECCCCCCHHHHHHHHHSSSEEEEECCCS--SSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHhccceEEEeCCh--HHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeC--
Confidence 52 2379999999999999999999999 99999998 3679999999999986
Q ss_pred ceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHh
Q psy1176 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHM 221 (232)
Q Consensus 165 ~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~ 221 (232)
|.++|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| ++++++.+
T Consensus 157 p~~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a-~~l~~l~~ 212 (309)
T 1r3e_A 157 RDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEES-LNVFEAAP 212 (309)
T ss_dssp TEEEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGC-BCTTTSCH
T ss_pred CEEEEEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHHc-cCHHHHhh
Confidence 799999999999999999999999999999999999999999999996 89999865
No 5
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=5.8e-68 Score=482.09 Aligned_cols=189 Identities=25% Similarity=0.415 Sum_probs=164.7
Q ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceecccc
Q psy1176 31 RAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENVA 110 (232)
Q Consensus 31 ~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~~ 110 (232)
.+|||+||||+||||||||+|+|++++.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|
T Consensus 5 ~~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 84 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 84 (316)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c---c-------cCcHHHHHHHHhcCccCceecCCccCccceeeCC----------------CCccEEEEEEeeEeeC--
Q psy1176 111 K---A-------SKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----------------NKKPTYMKSNLISSDV-- 162 (232)
Q Consensus 111 ~---v-------~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G----------------~R~v~Iy~i~l~~~~~-- 162 (232)
. + ++++++|++++++|+|+|+|+||+ |||+|++| +|+++||++++++|+.
T Consensus 85 ~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~--ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~ 162 (316)
T 1sgv_A 85 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS--VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD 162 (316)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC------------------------------CCCCCCEEEEEEEEEEEEET
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCH--HHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccC
Confidence 2 1 379999999999999999999999 99999987 3689999999999863
Q ss_pred CCceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 163 TLSTGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 163 ~~~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
+.|.++|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| ++|++|.+.
T Consensus 163 ~~p~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a-~tl~~l~~~ 221 (316)
T 1sgv_A 163 QLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQA-RSLDDLAER 221 (316)
T ss_dssp TEEEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGC-BCHHHHHHS
T ss_pred CCceEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHHc-cCHHHHhhc
Confidence 23789999999999999999999999999999999999999999999996 899999763
No 6
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=3.3e-67 Score=479.25 Aligned_cols=188 Identities=26% Similarity=0.355 Sum_probs=179.0
Q ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHhccccccCCCCCCCCceEEEEEEEccccccchhhhcCCceEEEEEEecceeccc
Q psy1176 30 IRAGYVNLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRATRLVKSQQSAGKEYISIFKLHSAVENV 109 (232)
Q Consensus 30 ~~~Gil~v~KP~G~tS~~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~aTkl~~~l~~~~K~Y~a~~~lG~~tdt~ 109 (232)
.+||||+||||+||||||||+++|++++.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus 23 ~~~Gil~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 102 (327)
T 1k8w_A 23 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS 102 (327)
T ss_dssp CCCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEEEEECCcccCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc---------ccCcHHHHHHHHhcCccCceecCCccCccceeeCC----------------CCccEEEEEEeeEeeCCC
Q psy1176 110 AK---------ASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAP----------------NKKPTYMKSNLISSDVTL 164 (232)
Q Consensus 110 ~~---------v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G----------------~R~v~Iy~i~l~~~~~~~ 164 (232)
|. +.+++++|++++++|+|+|+|+||+ |||+|++| +|+++||++++++|+.
T Consensus 103 D~eG~v~~~~~~~~t~e~i~~~l~~f~G~i~Q~PP~--~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~-- 178 (327)
T 1k8w_A 103 DADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM--YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-- 178 (327)
T ss_dssp BTTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCS--SSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhccceEEEeCCh--hheeccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeC--
Confidence 52 2479999999999999999999999 99999997 3679999999999976
Q ss_pred ceEEEEEEeeCCcchHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccccChHHHHhc
Q psy1176 165 STGIIWLKCQAGTYVRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGLVTFRQEHMF 222 (232)
Q Consensus 165 ~~~~~~v~cs~GTYIRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~~~l~~l~~~ 222 (232)
|.++|+|+||+||||||||+|||++|||+|||++||||++|+|+++|| ++|++|.++
T Consensus 179 ~~~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a-~~l~~l~~~ 235 (327)
T 1k8w_A 179 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-VTLEHLREL 235 (327)
T ss_dssp TEEEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGC-EEHHHHHHH
T ss_pred CEEEEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCccccc-cCHHHHHHH
Confidence 799999999999999999999999999999999999999999999996 899999764
No 7
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=123.06 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=87.7
Q ss_pred cCCceEEEEEEecceecccccccCcHHHHHHHHhcCcc-CceecCCccCccceeeCC-CCccEEEEEEeeEeeCCCceEE
Q psy1176 91 SAGKEYISIFKLHSAVENVAKASKKKMMIKQGLLDKHG-KPNENTPASYLAELEAAP-NKKPTYMKSNLISSDVTLSTGI 168 (232)
Q Consensus 91 ~~~K~Y~a~~~lG~~tdt~~~v~~t~e~l~~~l~~f~G-~i~Q~PP~~~ySAvK~~G-~R~v~Iy~i~l~~~~~~~~~~~ 168 (232)
+..|+|+|.+.+.... +.|+|+++.. |.| .|.|.||. -++.+..- .|.++||++++.+.++ ..|.
T Consensus 410 ~~~K~Y~alv~~~~~v--------~~e~l~~~~~-l~~l~I~QrtP~--RV~hRR~~~~R~R~I~~i~~~~~~~--~~~~ 476 (530)
T 2v9k_A 410 EKTKTYSALIWTNKAI--------QKKDIEFLND-IKDLKIDQKTPL--RVLHRRPLAVRARVIHFMETQYVDE--HHFR 476 (530)
T ss_dssp HCCEEEEEEEEESSCC--------CHHHHGGGGG-CCSEEEEEECCG--GGTTTSCCCEEEEEEEEEEEEEEET--TEEE
T ss_pred cCCeEEEEEEEEcCCC--------CHHHHHHHHh-cCCceeeccCCe--EEEEecCCCccceEEEEEEEEEecC--CEEE
Confidence 3689999999987665 5677877766 999 89999999 56665552 5899999999999986 6999
Q ss_pred EEEEeeCCcchHHHHH-H-------HHhhcCCcEEEeeEEEEEE
Q psy1176 169 IWLKCQAGTYVRTYCV-H-------MGLVLGVGAQMIELRRNRS 204 (232)
Q Consensus 169 ~~v~cs~GTYIRsL~~-D-------iG~~Lg~~A~l~~LrRt~~ 204 (232)
++|.|.+|||||.|+| | ||..||+.|+|.+|.-+.+
T Consensus 477 l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eLDV~~V 520 (530)
T 2v9k_A 477 LHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESV 520 (530)
T ss_dssp EEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEEEEEEE
T ss_pred EEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEeEEeEE
Confidence 9999999999999999 7 9999999999999998776
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.73 E-value=5.2e-08 Score=87.38 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=99.4
Q ss_pred ceEEEEeCCCCCCHH-------HHHHHHHHHhccccccCCCCCCCCceEEEEEEEcc--ccccchhhhcCCceEEEEEEe
Q psy1176 32 AGYVNLDKPSNPSSH-------EVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR--ATRLVKSQQSAGKEYISIFKL 102 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~-------~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~--aTkl~~~l~~~~K~Y~a~~~l 102 (232)
.-+++||||+|+.|+ .+++.+.. ..++.+.|.||..+||||+++-+. +.++..--..-.|+|.|.+.
T Consensus 67 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~- 142 (290)
T 3dh3_A 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD- 142 (290)
T ss_dssp CCEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES-
T ss_pred ceEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC-
Confidence 469999999999887 46666543 457899999999999999999865 34444433446899999764
Q ss_pred cceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeCCCceEEEEEEeeCCcchHHH
Q psy1176 103 HSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGTYVRTY 182 (232)
Q Consensus 103 G~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~~~~~~~v~cs~GTYIRsL 182 (232)
|.- +++.++... .|....-.+ .++..+ +.. + ...+.+.++.++---||-.
T Consensus 143 G~~---------~~~~i~~l~---~Gv~l~~~~-----------~~~~~v---~~~--~--~~~l~l~l~tGR~HQIR~~ 192 (290)
T 3dh3_A 143 KPI---------TEEFIRGMS---AGVPILGTV-----------TKKCKV---KKE--A--PFVFRITLVQGLNRQIRRM 192 (290)
T ss_dssp SCC---------CHHHHHHHH---TCCBCSSSB-----------CCCCEE---EEC--S--SSEEEEEESCCCTTHHHHH
T ss_pred CCC---------CHHHHHHHh---cCcccCCcc-----------cceEEE---EEc--C--CeEEEEEEeCCCChHHHHH
Confidence 322 334443321 121110000 011111 111 1 1356666666777889988
Q ss_pred HHHHHhhcCCcEEEeeEEEEEEeCccCcccc-------cChHHHHhchhhh
Q psy1176 183 CVHMGLVLGVGAQMIELRRNRSGIQSEEDGL-------VTFRQEHMFEHIV 226 (232)
Q Consensus 183 ~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~-------~~l~~l~~~~~~v 226 (232)
+..+|.. +..|.|+++|++++++ + +|-+|+..+...+
T Consensus 193 ~~~lG~p------V~~L~R~~iG~l~L~~-L~~G~~R~Lt~~Ei~~l~~~~ 236 (290)
T 3dh3_A 193 CEHFGYE------VKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLI 236 (290)
T ss_dssp HHHTTCC------EEEEEEEEETTEECTT-CCTTCEEECCHHHHHHHHHTC
T ss_pred HHHcCCe------EEEeEEEEECCEecCC-CCCCCcEECCHHHHHHHHHHh
Confidence 8766543 8999999999999975 5 5777777665443
No 9
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=97.88 E-value=8.5e-06 Score=69.91 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=55.8
Q ss_pred ceEEEEeCCCCCCHH-------HHHHHHHHHhc-cccccCCCCCCCCceEEEEEEEcccc--ccchhhhc--CCceEEEE
Q psy1176 32 AGYVNLDKPSNPSSH-------EVVAWIKRILR-CEKTGHSGTLDPKTSGCLIVCIDRAT--RLVKSQQS--AGKEYISI 99 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~-------~vv~~ik~~l~-~~KvGH~GTLDP~AtGvLvv~iG~aT--kl~~~l~~--~~K~Y~a~ 99 (232)
+.+++||||+|+.++ .+++.++..++ ..+.+..|.||..+||||+++-+... ++...+.+ -.|+|.|.
T Consensus 9 ~~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~ 88 (228)
T 1v9k_A 9 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 88 (228)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEE
Confidence 469999999999887 47888877665 34688999999999999999997753 35555544 47999997
Q ss_pred EE
Q psy1176 100 FK 101 (232)
Q Consensus 100 ~~ 101 (232)
+.
T Consensus 89 v~ 90 (228)
T 1v9k_A 89 VR 90 (228)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 10
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=97.86 E-value=4.2e-05 Score=66.79 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=85.6
Q ss_pred eEEEEeCCCCCCHHH-------HHHHHHHHhccccccCCCCCCCCceEEEEEEEccc--cccchhhhcCCceEEEEEEec
Q psy1176 33 GYVNLDKPSNPSSHE-------VVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA--TRLVKSQQSAGKEYISIFKLH 103 (232)
Q Consensus 33 Gil~v~KP~G~tS~~-------vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~a--Tkl~~~l~~~~K~Y~a~~~lG 103 (232)
=+|++|||+|+.|+. |++.+.. ..++...|-||-.+||||+++-... -+|..--..-.|+|.|.+. |
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~-G 90 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD-K 90 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES-S
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc-c
Confidence 489999999996652 3333321 2468889999999999999886432 2333322236899999764 2
Q ss_pred ceecccccccCcHHHHHHHHhcCccCc---eecCCccCccceeeCCCCccEEEEEEeeEeeCCCceEEEEEEeeCC--cc
Q psy1176 104 SAVENVAKASKKKMMIKQGLLDKHGKP---NENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAG--TY 178 (232)
Q Consensus 104 ~~tdt~~~v~~t~e~l~~~l~~f~G~i---~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~~~~~~~v~cs~G--TY 178 (232)
.- +++.++.. . .|.. .+..|. .+ +.++ . .. ++|..-.| --
T Consensus 91 ~~---------~~~~i~~l-~--~Gv~l~~~~~~~a--------------~~---~~l~--~--s~--l~i~L~tGR~HQ 135 (237)
T 2gml_A 91 PI---------TEEFIRGM-S--AGVPILGTVTKKC--------------KV---KKEA--P--FV--FRITLVQGLNRQ 135 (237)
T ss_dssp CC---------CHHHHHHH-S--SCCEETTEECCCC--------------EE---EEEE--T--TE--EEEEECCCSTTH
T ss_pred cC---------CHHHHHHH-H--cCeEeCCcccccE--------------EE---EEeC--C--EE--EEEEEecCCcHH
Confidence 22 33344332 1 1211 011111 11 2221 1 23 45555555 44
Q ss_pred hHHHHHHHHhhcCCcEEEeeEEEEEEeCccCcccc-------cChHHHHhchh
Q psy1176 179 VRTYCVHMGLVLGVGAQMIELRRNRSGIQSEEDGL-------VTFRQEHMFEH 224 (232)
Q Consensus 179 IRsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~da~-------~~l~~l~~~~~ 224 (232)
||-.+.. +|.. +..|.|+++|++.+++ + ++-+|+..+..
T Consensus 136 IRr~~a~----lG~p--V~~L~R~~iG~l~L~~-L~~G~~R~Lt~~E~~~l~~ 181 (237)
T 2gml_A 136 IRRMCEH----FGYE--VKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 181 (237)
T ss_dssp HHHHHHH----TTCC--EEEEEEEEETTEECTT-CCTTCEEECCHHHHHHHHT
T ss_pred HHHHHHH----cCCC--EeeeEEEEECCEecCC-CCCCCEEECCHHHHHHHHH
Confidence 6666554 4444 7899999999999864 4 46666666544
No 11
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=97.32 E-value=3.9e-05 Score=66.25 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=81.9
Q ss_pred ce-EEEEeCCCCCCHH-------HHHHHHHHHhccccccCCCCCCCCceEEEEEEEcc--ccccchhhhcCCceEEEEEE
Q psy1176 32 AG-YVNLDKPSNPSSH-------EVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR--ATRLVKSQQSAGKEYISIFK 101 (232)
Q Consensus 32 ~G-il~v~KP~G~tS~-------~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~--aTkl~~~l~~~~K~Y~a~~~ 101 (232)
+- +++||||+|+.++ .+++.++..+. .+++..|-||-.+||||+++-+. +.+++.--..-.|+|.|.+.
T Consensus 61 ~~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 61 EGQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp CCCEEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CCEEEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 46 8999999999887 23333333222 36888999999999999999875 34444322235899999764
Q ss_pred ecceecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCccEEEEEEeeEeeCCCceEEEEEEeeCCc--ch
Q psy1176 102 LHSAVENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKKPTYMKSNLISSDVTLSTGIIWLKCQAGT--YV 179 (232)
Q Consensus 102 lG~~tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~v~Iy~i~l~~~~~~~~~~~~~v~cs~GT--YI 179 (232)
|.-++ +.++.... |.. +.+. . .. .++.. + +.++ .-.+++....|. =|
T Consensus 140 -g~~~~---------~~i~~~~~---g~~--~~~~---~---~~-~~~a~-~--~~l~------~sl~~~~l~tGR~HQI 188 (243)
T 1vio_A 140 -DPVEE---------NYSAACAE---GIL--LRGE---K---EP-TKPAK-L--EILD------DYNVNLTISEGRYHQV 188 (243)
T ss_dssp -SCCCT---------THHHHHHH---CCC--CTTC---S---SC-CCCCE-E--EECS------SSEEEEEESCCCTTHH
T ss_pred -CCCCH---------HHHHHHhC---CeE--ECCC---C---cc-ceeEE-E--EEeC------CEEEEEEEccCCcHHH
Confidence 33221 12333222 210 0000 0 00 11111 1 2222 123455555564 35
Q ss_pred HHHHHHHHhhcCCcEEEeeEEEEEEeCccCcc
Q psy1176 180 RTYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211 (232)
Q Consensus 180 RsL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~d 211 (232)
|-... .+|.. +..+.|.++|++.+++
T Consensus 189 R~hl~----~lG~p--I~gd~r~~~G~~~l~~ 214 (243)
T 1vio_A 189 KRMFA----ALGNK--VVGLHRWKIGDVVLDE 214 (243)
T ss_dssp HHHHH----HTTCC--EEEEEEEEETTEECCT
T ss_pred HHHHH----HCCCe--EcccEEEEECCEEcCC
Confidence 55444 36666 8999999999999873
No 12
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=97.28 E-value=0.00016 Score=61.49 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=53.2
Q ss_pred ceEEEEeCCCCCCHH---------HHHHHHHHHhccccccCCCCCCCCceEEEEEEEccc--cccchhhhc--CCceEEE
Q psy1176 32 AGYVNLDKPSNPSSH---------EVVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA--TRLVKSQQS--AGKEYIS 98 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~---------~vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~a--Tkl~~~l~~--~~K~Y~a 98 (232)
+.+++||||+|+.++ .+++.++..+ .+++..|-||-.+||+|+++-+.. .++...+.+ -.|+|.|
T Consensus 19 ~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a 96 (217)
T 2i82_A 19 DHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA 96 (217)
T ss_dssp SSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEE
Confidence 579999999999765 2666676655 357889999999999999998664 335554544 4799999
Q ss_pred EEEecc
Q psy1176 99 IFKLHS 104 (232)
Q Consensus 99 ~~~lG~ 104 (232)
.+. |.
T Consensus 97 ~v~-G~ 101 (217)
T 2i82_A 97 RVW-GH 101 (217)
T ss_dssp EEE-SC
T ss_pred EEe-cc
Confidence 765 44
No 13
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=97.24 E-value=4.6e-05 Score=65.31 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=49.2
Q ss_pred ceEEEEeCCCCCCHHH-------HHHHHHHHhccccccCCCCCCCCceEEEEEEEcc-c-cccchhhhcCCceEEEEEE
Q psy1176 32 AGYVNLDKPSNPSSHE-------VVAWIKRILRCEKTGHSGTLDPKTSGCLIVCIDR-A-TRLVKSQQSAGKEYISIFK 101 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~~-------vv~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~-a-Tkl~~~l~~~~K~Y~a~~~ 101 (232)
+-+++||||+|+.+|. +++.++..++ .+.+..|-||-.+||+|+++-+. + .++..--..-.|+|.|.+.
T Consensus 63 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 63 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CEEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 4699999999998763 3333333222 36788999999999999999875 3 3444322235899999764
No 14
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=97.17 E-value=0.00033 Score=62.99 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=52.8
Q ss_pred ceEEEEeCCCCCCHH--------HHHHHHHHHhc----cccccCCCCCCCCceEEEEEEEccc--cccchhhhc--CCce
Q psy1176 32 AGYVNLDKPSNPSSH--------EVVAWIKRILR----CEKTGHSGTLDPKTSGCLIVCIDRA--TRLVKSQQS--AGKE 95 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~--------~vv~~ik~~l~----~~KvGH~GTLDP~AtGvLvv~iG~a--Tkl~~~l~~--~~K~ 95 (232)
+-+++||||+|+.+| .+++.+...+. ..+.+..|-||-.+||||+++-+.. .++...+.+ -.|+
T Consensus 90 ~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~ 169 (325)
T 1v9f_A 90 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 169 (325)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEE
Confidence 469999999999765 36777765542 3478899999999999999998764 234444444 4799
Q ss_pred EEEEEE
Q psy1176 96 YISIFK 101 (232)
Q Consensus 96 Y~a~~~ 101 (232)
|.|.+.
T Consensus 170 Y~a~v~ 175 (325)
T 1v9f_A 170 YEAVAI 175 (325)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999765
No 15
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=97.08 E-value=0.00011 Score=61.06 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred ceEEEEeCCCCCCHHHHHH----HHHHHhccccccCCCCCCCCceEEEEEEEccc-c-ccchhhhcCCceEEEEEEecce
Q psy1176 32 AGYVNLDKPSNPSSHEVVA----WIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA-T-RLVKSQQSAGKEYISIFKLHSA 105 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~~vv~----~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~a-T-kl~~~l~~~~K~Y~a~~~lG~~ 105 (232)
+-+++||||+|+.++---. .+...+...+....|-||-.+||+|+++-+.. . ++...-..-.|+|.|.+. |.-
T Consensus 11 ~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~-G~~ 89 (189)
T 2oml_A 11 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE-GIP 89 (189)
T ss_dssp CCEEEEEECTTBCSCSSCCTTCBCGGGTCCCSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEEEE-SCC
T ss_pred CeEEEEECCCCCEecCCCCCCCCCHHHHcCCCCceECCCCCCCCeeEEEEEcCHHHHHHHhCccCCCcEEEEEEEc-CCC
Confidence 4699999999997762110 11112223467889999999999999998653 2 233332345899999775 332
Q ss_pred ecccccccCcHHHHHHHHhcCccCceecCCccCccceeeCCCCc---cEEEEEEeeEeeCCCceEEEEEEeeCCcc--hH
Q psy1176 106 VENVAKASKKKMMIKQGLLDKHGKPNENTPASYLAELEAAPNKK---PTYMKSNLISSDVTLSTGIIWLKCQAGTY--VR 180 (232)
Q Consensus 106 tdt~~~v~~t~e~l~~~l~~f~G~i~Q~PP~~~ySAvK~~G~R~---v~Iy~i~l~~~~~~~~~~~~~v~cs~GTY--IR 180 (232)
. .+++...-..+.-.-.+..|. .+...+... .+.| ++++.. ..+.-.+++..-.|.. ||
T Consensus 90 ~---------~~~~~~i~~~i~~~~~~~~~~----~~~~~~~~~~~~~t~~--~v~~~~-~~~~slv~~~l~TGR~HQIR 153 (189)
T 2oml_A 90 T---------QDALEALRNGVTLNDGPTLPA----GAELVDEPAWLWPRNP--PIRERK-SIPTSWLKITLYEGRNRQVR 153 (189)
T ss_dssp C---------HHHHHHHHHCCEETTEECCCC----EEEEECCCTTCCCCSS--CCC-CT-TSCEEEEEEEESCCCTTHHH
T ss_pred C---------HHHHHHHHcCceeCCceeeee----EEEEeccccccccccc--cccccc-CCCcEEEEEEEeeCCCHHHH
Confidence 2 222221111111000112222 111111111 1111 111111 0134446666667744 45
Q ss_pred HHHHHHHhhcCCcEEEeeEEEEEEeCccCcc
Q psy1176 181 TYCVHMGLVLGVGAQMIELRRNRSGIQSEED 211 (232)
Q Consensus 181 sL~~DiG~~Lg~~A~l~~LrRt~~G~f~l~d 211 (232)
-... .+|.. +..+.|..+|++.+++
T Consensus 154 vhla----~lG~P--I~gD~~Y~~g~~~l~~ 178 (189)
T 2oml_A 154 RMTA----HVGFP--TLRLIRYAMGDYSLDN 178 (189)
T ss_dssp HHHH----HTTCC--EEEEEEEEETTEECTT
T ss_pred HHHH----HcCCc--CcceEEEEECCEEcCC
Confidence 4443 36666 8899999999998864
No 16
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=96.94 E-value=0.00018 Score=61.44 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCCHHHHH----HHHHHHhccccccCCCCCCCCceEEEEEEEccc-cc-cchhhhcCCceEEEEEE
Q psy1176 32 AGYVNLDKPSNPSSHEVV----AWIKRILRCEKTGHSGTLDPKTSGCLIVCIDRA-TR-LVKSQQSAGKEYISIFK 101 (232)
Q Consensus 32 ~Gil~v~KP~G~tS~~vv----~~ik~~l~~~KvGH~GTLDP~AtGvLvv~iG~a-Tk-l~~~l~~~~K~Y~a~~~ 101 (232)
+-+++||||+|+.|+.-- ..+-..+...+....|-||-.+||||+++-+.. .+ +..-...-.|+|.|.+.
T Consensus 39 ~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~~~~v~K~Y~A~V~ 114 (217)
T 2olw_A 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 (217)
T ss_dssp CCEEEEEECTTBCSCSSCCTTSBCGGGTCCCCSCEESSCCCTTCEEEEEEESCHHHHHHHHCTTCCCCEEEEEEEE
T ss_pred CcEEEEECCCCCEeccCCCCCCccHHHHhCcCCceECCCCCCCCeeEEEEEcCHHHHHHHHcccccCCEEEEEEEc
Confidence 579999999999877311 011122223467889999999999999998653 22 33333346899999775
No 17
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=27.63 E-value=49 Score=30.19 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=39.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc--ccccCCCCCCCCceEEEEEEE
Q psy1176 34 YVNLDKPSNPSSHEVVAWIKRILRC--EKTGHSGTLDPKTSGCLIVCI 79 (232)
Q Consensus 34 il~v~KP~G~tS~~vv~~ik~~l~~--~KvGH~GTLDP~AtGvLvv~i 79 (232)
++.|+| .|++-.++++.|.+.++. +.+|.+|+=|-.|-=.=-+++
T Consensus 67 ~~~l~K-~n~~T~~a~~~Lak~lgi~~~~i~yAGlKDk~AvT~Q~~sv 113 (379)
T 1szw_A 67 LVRILK-NGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCA 113 (379)
T ss_dssp EEEEEE-SSSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEE
T ss_pred EEEEEE-cCCCHHHHHHHHHHHhCcCHHhEeECccccCCEEEEEEEEE
Confidence 677777 699999999999999985 799999999999977766775
No 18
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}
Probab=25.21 E-value=61 Score=24.63 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCC--------------ceEEEEEEEccccccchhhhcCCc
Q psy1176 45 SHEVVAWIKRILRCEKTGHSGTLDPK--------------TSGCLIVCIDRATRLVKSQQSAGK 94 (232)
Q Consensus 45 S~~vv~~ik~~l~~~KvGH~GTLDP~--------------AtGvLvv~iG~aTkl~~~l~~~~K 94 (232)
+.++.+.+...+...++|.-.|.|+- ..|.|.+.++........|...++
T Consensus 5 ~~~l~~~~~~~l~~~~~~~LaT~~~d~~~~~pm~~~~~~d~~g~l~F~T~~~s~K~~~l~~np~ 68 (147)
T 3dmb_A 5 PKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRR 68 (147)
T ss_dssp HHHHHHHHHHHHHHHCEEEEEETTSSSCCCEEEEEECSSSSCCCEEEEECTTCTTHHHHTTCEE
T ss_pred hHHHHHHHHHHHhcCCEEEEEEEcCCCCceEeCccccccCCCceEEEEecCCcHHHHHHhhCCe
Confidence 45888999999988888888887751 137788888888888888876665
Done!